RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781037|ref|YP_003065450.1| porphobilinogen deaminase [Candidatus Liberibacter asiaticus str. psy62] (307 letters) >1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} (A:1-103,A:194-219) Length = 129 Score = 132 bits (335), Expect = 4e-32 Identities = 43/105 (40%), Positives = 59/105 (56%), Gaps = 2/105 (1%) Query: 1 MEKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGG 60 M RI TR SPLAL A + LM H P + ++P+ T+GD I + L ++GG Sbjct: 1 MLDNVLRIATRQSPLALWQAHYVKDKLMASH--PGLVVELVPMVTRGDVILDTPLAKVGG 58 Query: 61 KGLFTEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPRED 105 KGLF +E+E L+ D AVHS KD+P + +GL + RED Sbjct: 59 KGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICERED 103 >3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A* (A:1-120,A:217-241) Length = 145 Score = 123 bits (311), Expect = 2e-29 Identities = 41/104 (39%), Positives = 56/104 (53%), Gaps = 2/104 (1%) Query: 3 KKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKG 62 + R+GTR S LA ++L + P II +ST GD+I + L++IG K Sbjct: 21 MRVIRVGTRKSQLARIQTDSVVATLKASY--PGLQFEIIAMSTTGDKILDTALSKIGEKS 78 Query: 63 LFTEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDI 106 LFT+E+E L E+D VHS KD+PT L G I A RE + Sbjct: 79 LFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKREAV 122 >1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} (A:104-193) Length = 90 Score = 104 bits (262), Expect = 1e-23 Identities = 39/88 (44%), Positives = 53/88 (60%) Query: 107 RDVFISHTAQSLKDLALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKA 166 RD F+S+ SL L S++GTSSLRR+ L R D+ + RG + TRL+KL+N + Sbjct: 2 RDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEY 61 Query: 167 HAILLAYAGIKRLKKEKVIKEILNIEDF 194 AI+LA AG+KRL E I+ L E Sbjct: 62 DAIILAVAGLKRLGLESRIRAALPPEIS 89 >3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A* (A:121-216) Length = 96 Score = 98.3 bits (245), Expect = 1e-21 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 4/94 (4%) Query: 105 DIRDVFISH---TAQSLKDLALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKL 161 + D + H ++L+ L SV+GTSSLRR A L R + RG + TRL KL Sbjct: 1 NPHDAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKL 60 Query: 162 N-NNKAHAILLAYAGIKRLKKEKVIKEILNIEDF 194 + + AI+LA AG++R+ + +IL+ E+ Sbjct: 61 DEQQEFSAIILATAGLQRMGWHNRVGQILHPEEC 94 >1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} (A:220-313) Length = 94 Score = 82.1 bits (203), Expect = 8e-17 Identities = 22/76 (28%), Positives = 32/76 (42%) Query: 222 NHEDTWDSVNCERAFLAELDGSCKSAIAGFAYCKGSTLYFYGIVLASDGKIFHEVSRNGN 281 NH +T V ERA L+G C+ I +A ++ +V A DG R G Sbjct: 1 NHHETALRVTAERAMNTRLEGGCQVPIGSYAELIDGEIWLRALVGAPDGSQIIRGERRGA 60 Query: 282 RCDAINIGRDAAQYIR 297 DA +G A+ + Sbjct: 61 PQDAEQMGISLAEELL 76 >3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A* (A:242-364) Length = 123 Score = 78.8 bits (194), Expect = 9e-16 Identities = 17/76 (22%), Positives = 25/76 (32%) Query: 222 NHEDTWDSVNCERAFLAELDGSCKSAIAGFAYCKGSTLYFYGIVLASDGKIFHEVSRNGN 281 + +T ERAFL L+G C +A K LY G V + DG + + Sbjct: 1 HDPETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQAT 60 Query: 282 RCDAINIGRDAAQYIR 297 + Sbjct: 61 IHVPAQHEDGPEDDPQ 76 >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} (A:1-206) Length = 206 Score = 28.8 bits (63), Expect = 0.94 Identities = 8/49 (16%), Positives = 15/49 (30%) Query: 34 PPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVH 82 PPH ++ I + + + G L + L +G Sbjct: 1 PPHLAALVLARGGSKGIPLKNIKRLAGVPLIGWVLRAALDAGVFQSVWV 49 >2p5x_A ASMTL, N-acetylserotonin O-methyltransferase-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 2.00A {Homo sapiens} (A:) Length = 230 Score = 27.3 bits (60), Expect = 3.0 Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 18/134 (13%) Query: 126 VIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVI 185 V+ ++S RR+ +L V+ + K + +A+ A K +V Sbjct: 7 VLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAMETAKQ-----KALEVA 61 Query: 186 KEILNIEDFPPSPGQGA-ICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAELDGSC 244 + + P GA + L K ++ +D L+ L G Sbjct: 62 NRLYQKDLRAPDVVIGADTIVTVG-----GLILEKPVDKQDA-------YRMLSRLSGRE 109 Query: 245 KSAIAGFAYCKGST 258 S G A S+ Sbjct: 110 HSVFTGVAIVHCSS 123 >2gno_A DNA polymerase III, gamma subunit-related protein; TM0771, structural genomics, PSI, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} (A:141-305) Length = 165 Score = 26.9 bits (59), Expect = 3.1 Identities = 9/21 (42%), Positives = 16/21 (76%) Query: 215 QELVKVINHEDTWDSVNCERA 235 Q L ++I HE+TW+SV +++ Sbjct: 106 QRLTRIILHENTWESVEDQKS 126 >2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} (A:) Length = 129 Score = 26.7 bits (59), Expect = 4.2 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 64 FTEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLAL 123 F E+ + I ++ SA M LLK L S+ + + ++ + + D+ L Sbjct: 38 FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER-IYNEIPDINL 96 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0641 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,326,204 Number of extensions: 104573 Number of successful extensions: 289 Number of sequences better than 10.0: 1 Number of HSP's gapped: 285 Number of HSP's successfully gapped: 16 Length of query: 307 Length of database: 4,956,049 Length adjustment: 88 Effective length of query: 219 Effective length of database: 1,981,209 Effective search space: 433884771 Effective search space used: 433884771 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (24.8 bits)