HHsearch alignment for GI: 254781038 and conserved domain: COG0068
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].
Probab=99.42 E-value=7.3e-11 Score=95.05 Aligned_cols=228 Identities=18% Similarity=0.303 Sum_probs=152.6
Q ss_pred HHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCC--CCEEEEEEC
Q ss_conf 999999838982245368740664301256779999999887514864333036776530132256799--843999706
Q gi|254781038|r 67 IKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAF--PYLVLLVSG 144 (363)
Q Consensus 67 i~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~--PfL~LlvSG 144 (363)
T Consensus 440 ~~~~~~~~~~~p---d~i~cDlHP~y~tt-----~~A~e----~~~~~~~VqHH~AH~~a~mae~~~~~~~~vi~ia~DG 507 (750)
T COG0068 440 LRHFLKIYDFEP---DYIVCDLHPNYNTT-----KYAEE----FALPLLQVQHHHAHALAVMAEHGLPLDEKVIGIALDG 507 (750)
T ss_pred HHHHHHHHCCCC---CEEEEECCCCCCHH-----HHHHH----HCCCCEEEEHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf 999998716897---64887257652114-----67776----1564013105678889886056788777569999658
Q ss_pred -----------CCEEEEEECCCC-------------------------------------CC----------------E-
Q ss_conf -----------874799983756-------------------------------------43----------------0-
Q gi|254781038|r 145 -----------GHTQILLVRDVA-------------------------------------HY----------------D- 159 (363)
Q Consensus 145 -----------GhT~l~~~~~~~-------------------------------------~~----------------~- 159 (363)
T Consensus 508 ~GyG~dGk~WGGE~l~~d~~~~erlahl~~~~L~GGd~Aik~P~R~~ls~l~~~~~~~~k~~~~~~~e~~~~~l~~~~e~ 587 (750)
T COG0068 508 VGYGEDGKVWGGEFLVIDYKEYERLAHLEYVDLPGGDLAIKYPLRMALSILLRFFLKLIKNYNEKYGELELKVLAQALEK 587 (750)
T ss_pred CCCCCCCCEECCEEEEECCHHHHHHCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 53255676315158963127664303676210689852343458899999987316889851634333457889999871
Q ss_pred ECCCCCCCCHHHHHHHHHHHCCC----CCCH--HHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 00223363002388889885288----7610--35566655405733345861110688754221024589999998511
Q gi|254781038|r 160 RLGTTIDDALGECFDKIAKSLGL----PYPG--GVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFD 233 (363)
Q Consensus 160 ilg~T~Dda~Ge~~DK~ar~Lgl----~yPg--Gp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~ 233 (363)
T Consensus 588 gin~p~tSS~GRlfDAvaalLgi~~~~tYEGE~A~~LEa~a~~~~~~~~~~~~~~~~~~vld-----~~~~~~~~l~~~- 661 (750)
T COG0068 588 GINAPLTSSIGRVFDAVAALLGICETRTYEGEAAMALEALADQSDGVDYPYEIKNEDNQVLD-----LKELILGVLEDL- 661 (750)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHCCCCCCCCEECCCCCCEEE-----HHHHHHHHHHHH-
T ss_conf 46873101422889999998744110444240466579766210367666201157761766-----999999999986-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCC
Q ss_conf 20121068899999999999999999999999876214455236541334587999999999998689889962878877
Q gi|254781038|r 234 VLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCT 313 (363)
Q Consensus 234 ~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ct 313 (363)
T Consensus 662 --~~~~~~~iA~~fh~~la~~~~e~~~~~a~------~~gi~~V~lsGGVf~N~~l~~~~~~~lk~~~f~~~~~~~~P~~ 733 (750)
T COG0068 662 --LKDEPEKIATKFHNALAEGFAELAVELAK------KYGINKVVLSGGVFQNRLLLERLAKYLKKEGFRFLFHQEVPAG 733 (750)
T ss_pred --HCCCHHHHHHHHHHHHHHHHHHHHHHHHH------HCCCCEEEEECCEEECHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf --03778899999999999999999999998------6594279972776414999999999997539267650466999
Q ss_pred CHHHHHH
Q ss_conf 2589999
Q gi|254781038|r 314 DNAVMIA 320 (363)
Q Consensus 314 DNAaMIA 320 (363)
T Consensus 734 DggIslG 740 (750)
T COG0068 734 DGGISLG 740 (750)
T ss_pred CCCEEHH
T ss_conf 9844488