Query gi|254781038|ref|YP_003065451.1| putative DNA-binding/iron metalloprotein/AP endonuclease [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 363
No_of_seqs 183 out of 2943
Neff 6.1
Searched_HMMs 39220
Date Mon May 30 04:39:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781038.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09604 putative DNA-binding/ 100.0 0 0 872.4 35.6 334 6-350 1-334 (335)
2 COG0533 QRI7 Metal-dependent p 100.0 0 0 850.7 33.3 339 6-354 1-342 (342)
3 PTZ00340 O-sialoglycoprotein e 100.0 0 0 819.4 34.5 334 4-354 6-348 (348)
4 PRK09605 O-sialoglycoprotein e 100.0 0 0 798.0 33.9 329 5-356 1-329 (536)
5 TIGR00329 gcp metalloendopepti 100.0 0 0 793.0 23.1 311 9-320 1-337 (337)
6 KOG2707 consensus 100.0 0 0 706.1 28.4 339 7-349 33-385 (405)
7 KOG2708 consensus 100.0 0 0 489.0 27.0 331 6-354 2-335 (336)
8 pfam00814 Peptidase_M22 Glycop 100.0 0 0 483.2 20.2 225 31-321 1-225 (225)
9 COG1214 Inactive homolog of me 99.8 2E-19 5.1E-24 154.1 8.3 104 6-126 1-104 (220)
10 COG2192 Predicted carbamoyl tr 99.6 9.5E-13 2.4E-17 108.1 18.2 289 6-327 1-337 (555)
11 COG0068 HypF Hydrogenase matur 99.4 7.3E-11 1.9E-15 95.0 18.2 228 67-320 440-740 (750)
12 TIGR00143 hypF [NiFe] hydrogen 99.3 5.3E-09 1.3E-13 82.2 22.5 229 76-320 455-793 (799)
13 PRK13317 pantothenate kinase; 99.0 3.2E-07 8.3E-12 69.9 19.7 247 4-312 1-262 (273)
14 TIGR03192 benz_CoA_bzdQ benzoy 98.9 4.6E-06 1.2E-10 61.9 21.7 261 2-329 28-292 (293)
15 TIGR03286 methan_mark_15 putat 98.8 1.3E-06 3.2E-11 65.8 17.2 243 5-309 143-388 (404)
16 COG1924 Activator of 2-hydroxy 98.8 9.1E-06 2.3E-10 59.9 20.5 239 4-309 133-375 (396)
17 PRK09585 anmK anhydro-N-acetyl 98.7 1.2E-05 3.1E-10 59.0 20.3 300 4-329 2-343 (366)
18 pfam01869 BcrAD_BadFG BadF/Bad 98.7 3.1E-05 8E-10 56.2 20.9 275 9-321 1-285 (288)
19 pfam03702 UPF0075 Uncharacteri 98.7 6.4E-06 1.6E-10 60.9 16.8 296 6-329 1-340 (363)
20 pfam02543 CmcH_NodU Carbamoylt 98.4 3.8E-05 9.6E-10 55.6 14.8 194 126-330 2-216 (360)
21 PRK09698 D-allose kinase; Prov 98.1 0.0016 4.2E-08 44.3 19.7 133 3-153 1-148 (302)
22 PRK03011 butyrate kinase; Prov 97.3 0.02 5E-07 36.9 16.2 290 4-331 1-349 (356)
23 PRK13310 N-acetyl-D-glucosamin 97.2 0.025 6.3E-07 36.2 18.8 274 8-325 2-300 (302)
24 PRK09557 fructokinase; Reviewe 97.2 0.026 6.6E-07 36.1 17.3 261 8-324 2-298 (301)
25 PRK05082 N-acetylmannosamine k 97.0 0.037 9.4E-07 35.0 20.4 261 6-327 1-288 (291)
26 pfam03630 Fumble Fumble. Fumbl 97.0 0.042 1.1E-06 34.6 17.9 210 79-308 70-314 (329)
27 PTZ00294 glycerol kinase; Prov 96.9 0.046 1.2E-06 34.4 16.1 82 239-327 383-465 (510)
28 COG1940 NagC Transcriptional r 96.8 0.059 1.5E-06 33.6 21.2 278 1-326 1-306 (314)
29 PRK00047 glpK glycerol kinase; 96.2 0.035 8.8E-07 35.2 7.6 80 4-88 3-82 (498)
30 COG2377 Predicted molecular ch 95.7 0.2 5E-06 30.0 18.8 246 63-333 75-350 (371)
31 PRK10640 rhaB rhamnulokinase; 95.6 0.14 3.5E-06 31.0 8.7 194 109-324 207-423 (471)
32 KOG2517 consensus 95.4 0.091 2.3E-06 32.3 7.3 74 239-319 384-457 (516)
33 KOG2201 consensus 95.2 0.29 7.5E-06 28.8 9.9 135 134-286 173-317 (371)
34 PRK08674 bifunctional phosphog 94.9 0.34 8.6E-06 28.4 8.9 143 57-231 2-154 (328)
35 PRK04123 ribulokinase; Provisi 94.8 0.19 5E-06 30.0 7.4 81 4-88 1-87 (542)
36 COG1070 XylB Sugar (pentulose 94.6 0.3 7.7E-06 28.7 8.1 76 246-324 374-451 (502)
37 pfam02782 FGGY_C FGGY family o 94.5 0.29 7.5E-06 28.8 7.8 78 237-322 113-191 (193)
38 TIGR00555 panK_eukar pantothen 94.4 0.48 1.2E-05 27.3 13.4 205 78-306 100-372 (387)
39 pfam00370 FGGY_N FGGY family o 94.4 0.28 7E-06 29.0 7.4 77 7-88 1-77 (245)
40 PRK00047 glpK glycerol kinase; 94.0 0.57 1.5E-05 26.8 8.4 136 169-327 310-455 (498)
41 PRK10331 L-fuculokinase; Provi 93.8 0.61 1.6E-05 26.6 8.5 81 239-326 359-440 (470)
42 TIGR00241 CoA_E_activ CoA-subs 93.0 0.81 2.1E-05 25.7 14.9 245 7-309 1-247 (259)
43 PRK10939 autoinducer-2 (AI-2) 92.2 0.87 2.2E-05 25.5 7.1 79 6-89 3-83 (521)
44 COG0554 GlpK Glycerol kinase [ 91.0 1.4 3.5E-05 24.2 8.3 102 239-353 372-473 (499)
45 COG1069 AraB Ribulose kinase [ 90.7 1.4 3.7E-05 24.0 11.3 87 241-337 401-487 (544)
46 PRK08313 acetyl-CoA acetyltran 90.6 0.43 1.1E-05 27.6 4.2 60 59-119 25-85 (391)
47 cd00529 RuvC_resolvase Hollida 89.0 2 5E-05 23.1 9.1 98 8-118 2-102 (154)
48 PRK10719 eutA reactivating fac 88.8 0.37 9.4E-06 28.1 2.7 122 59-185 64-209 (471)
49 PRK00039 ruvC Holliday junctio 86.2 2.8 7.2E-05 22.0 8.7 30 6-35 2-31 (169)
50 COG2971 Predicted N-acetylgluc 86.0 2.9 7.3E-05 21.9 19.0 141 3-162 2-142 (301)
51 TIGR02628 fuculo_kin_coli L-fu 85.2 2.2 5.6E-05 22.7 5.1 78 249-328 377-454 (473)
52 cd05017 SIS_PGI_PMI_1 The memb 84.7 0.92 2.4E-05 25.3 2.9 112 91-230 6-118 (119)
53 COG3426 Butyrate kinase [Energ 84.1 3.5 8.9E-05 21.4 15.5 278 7-331 4-349 (358)
54 COG1712 Predicted dinucleotide 84.0 3.5 9E-05 21.3 5.7 67 246-330 68-134 (255)
55 TIGR01312 XylB xylulokinase; I 83.8 3.6 9.2E-05 21.3 12.2 89 216-324 357-448 (494)
56 TIGR02845 spore_V_AD stage V s 83.8 3.4 8.6E-05 21.5 5.5 110 57-174 48-197 (331)
57 PRK07937 lipid-transfer protei 83.5 1.7 4.4E-05 23.4 3.9 66 60-128 25-90 (352)
58 PRK06065 acetyl-CoA acetyltran 82.7 2.1 5.4E-05 22.9 4.1 58 60-118 31-89 (393)
59 cd00826 nondecarbox_cond_enzym 81.7 1.3 3.3E-05 24.3 2.7 63 61-127 25-91 (393)
60 TIGR02627 rhamnulo_kin rhamnul 81.3 4.4 0.00011 20.6 7.7 86 237-330 357-442 (460)
61 pfam02075 RuvC Crossover junct 80.7 4.6 0.00012 20.5 8.0 102 8-121 1-103 (148)
62 PRK09953 wcaD putative colanic 80.4 2.3 5.9E-05 22.6 3.6 72 214-307 211-285 (405)
63 pfam00012 HSP70 Hsp70 protein. 80.3 4.8 0.00012 20.4 16.0 162 136-323 187-369 (598)
64 TIGR01141 hisC histidinol-phos 79.4 5.1 0.00013 20.2 7.3 106 182-312 8-121 (377)
65 PRK13930 rod shape-determining 78.9 5.3 0.00013 20.1 13.3 238 63-329 86-335 (336)
66 PRK06157 acetyl-CoA acetyltran 78.3 3.7 9.5E-05 21.2 4.2 60 60-123 28-87 (400)
67 PRK07124 consensus 78.0 3.4 8.8E-05 21.4 3.9 80 45-127 15-94 (402)
68 TIGR01368 CPSaseIIsmall carbam 77.7 3.2 8.2E-05 21.6 3.7 46 80-128 237-283 (383)
69 PRK06059 lipid-transfer protei 77.6 2.9 7.3E-05 21.9 3.4 59 59-118 23-82 (399)
70 PRK00180 acetate kinase; Revie 76.8 6 0.00015 19.7 6.2 79 216-304 274-353 (399)
71 cd00318 Phosphoglycerate_kinas 76.5 4.5 0.00011 20.6 4.1 41 274-315 214-273 (397)
72 PRK06289 acetyl-CoA acetyltran 75.9 5 0.00013 20.3 4.3 64 60-123 27-92 (408)
73 TIGR01315 5C_CHO_kinase FGGY-f 75.9 6.3 0.00016 19.6 5.4 66 255-323 450-517 (574)
74 pfam00871 Acetate_kinase Aceto 75.5 6.5 0.00017 19.5 6.4 79 216-304 272-351 (387)
75 PRK00073 pgk phosphoglycerate 75.5 5.1 0.00013 20.2 4.2 41 274-315 211-270 (391)
76 PRK12440 acetate kinase; Revie 75.3 6.5 0.00017 19.5 6.5 52 251-303 299-351 (397)
77 KOG4417 consensus 74.8 5.2 0.00013 20.1 4.1 112 6-126 42-162 (261)
78 PRK05560 DNA gyrase subunit A; 74.1 1.8 4.7E-05 23.3 1.7 95 12-116 83-187 (822)
79 cd00831 CHS_like Chalcone and 73.4 7.3 0.00019 19.2 6.3 85 61-149 87-179 (361)
80 PRK06365 acetyl-CoA acetyltran 73.1 5.7 0.00014 19.9 4.0 58 59-117 23-81 (415)
81 PRK08235 acetyl-CoA acetyltran 72.5 5 0.00013 20.3 3.5 72 45-123 15-90 (393)
82 pfam02593 DUF166 Uncharacteriz 71.6 7.1 0.00018 19.2 4.2 21 288-308 87-107 (215)
83 COG0282 ackA Acetate kinase [E 69.6 8.8 0.00022 18.6 6.7 65 239-304 281-351 (396)
84 TIGR00016 ackA acetate kinase; 68.8 9.1 0.00023 18.5 7.9 87 208-304 282-370 (416)
85 PTZ00005 phosphoglycerate kina 68.8 6.7 0.00017 19.4 3.6 41 274-315 233-293 (419)
86 PRK12578 acetyl-CoA acetyltran 68.3 7.4 0.00019 19.1 3.7 62 60-122 22-83 (385)
87 TIGR02707 butyr_kinase butyrat 68.1 9.4 0.00024 18.4 6.8 226 18-298 12-320 (353)
88 PRK13301 putative L-aspartate 67.2 9.8 0.00025 18.3 6.2 39 272-310 85-123 (267)
89 cd00751 thiolase Thiolase are 66.8 9.3 0.00024 18.4 4.0 60 60-123 23-86 (386)
90 TIGR01265 tyr_nico_aTase tyros 66.5 6.8 0.00017 19.4 3.2 29 285-313 118-146 (424)
91 PRK00561 ppnK inorganic polyph 66.3 10 0.00026 18.1 4.8 58 58-124 11-68 (259)
92 cd00832 CLF Chain-length facto 66.3 10 0.00026 18.1 5.3 23 60-82 72-94 (399)
93 PRK06845 consensus 66.1 10 0.00025 18.2 4.0 77 43-127 13-95 (392)
94 cd00829 SCP-x_thiolase Thiolas 65.5 9.3 0.00024 18.4 3.7 58 59-120 16-76 (375)
95 CHL00197 carA carbamoyl-phosph 65.3 9.7 0.00025 18.3 3.8 42 81-124 236-277 (383)
96 pfam00162 PGK Phosphoglycerate 65.1 6.6 0.00017 19.4 2.9 41 274-315 213-272 (383)
97 PRK08304 stage V sporulation p 65.0 11 0.00027 18.0 5.2 115 58-180 55-207 (336)
98 PRK13303 L-aspartate dehydroge 64.7 11 0.00028 17.9 6.1 40 272-311 84-123 (265)
99 PRK13929 rod-share determining 64.6 11 0.00028 17.9 16.4 253 50-329 71-332 (335)
100 PRK07516 acetyl-CoA acetyltran 64.5 10 0.00026 18.1 3.8 63 61-123 24-87 (389)
101 PRK00290 dnaK molecular chaper 64.5 11 0.00028 17.9 9.4 170 136-331 188-380 (631)
102 cd05566 PTS_IIB_galactitol PTS 63.7 10 0.00026 18.1 3.7 31 277-307 5-35 (89)
103 PRK06064 acetyl-CoA acetyltran 63.6 11 0.00028 17.9 3.8 58 61-121 24-85 (389)
104 PRK06158 thiolase; Provisional 63.5 11 0.00029 17.8 3.9 47 57-107 26-72 (384)
105 PRK05790 acetyl-CoA acetyltran 63.3 10 0.00026 18.1 3.7 75 45-127 15-94 (393)
106 PRK12838 carbamoyl phosphate s 62.7 10 0.00026 18.1 3.5 44 80-127 208-251 (356)
107 PRK13304 L-aspartate dehydroge 60.8 13 0.00033 17.5 6.2 39 272-310 84-122 (265)
108 PRK00714 dinucleoside polyphos 60.2 13 0.00033 17.4 5.2 111 12-151 3-113 (156)
109 PRK08142 acetyl-CoA acetyltran 59.8 13 0.00034 17.4 4.2 57 58-123 24-81 (388)
110 TIGR01815 TrpE-clade3 anthrani 59.0 7.1 0.00018 19.2 2.2 49 76-126 563-612 (726)
111 cd01703 Pol_iota Pol iota is m 58.3 9.1 0.00023 18.5 2.6 35 187-222 255-289 (394)
112 PRK07800 consensus 58.3 14 0.00036 17.2 3.8 64 60-127 27-94 (393)
113 pfam06723 MreB_Mbl MreB/Mbl pr 56.8 15 0.00038 17.0 12.8 50 276-328 276-326 (327)
114 PRK12564 carbamoyl phosphate s 56.5 15 0.00038 17.0 3.5 36 81-117 213-248 (355)
115 COG0422 ThiC Thiamine biosynth 56.2 15 0.00039 17.0 5.7 136 172-327 171-323 (432)
116 cd01976 Nitrogenase_MoFe_alpha 56.2 15 0.00039 17.0 16.9 212 60-314 83-336 (421)
117 PRK12379 propionate/acetate ki 56.1 15 0.00039 16.9 7.4 53 251-304 300-353 (400)
118 PRK10310 galactitol-specific P 55.7 15 0.00039 16.9 3.5 32 276-307 6-37 (94)
119 KOG1250 consensus 55.6 15 0.00039 16.9 3.6 43 82-129 217-260 (457)
120 pfam07451 SpoVAD Stage V sporu 54.2 16 0.00042 16.7 5.1 114 58-179 50-201 (329)
121 PRK06333 3-oxoacyl-(acyl carri 53.5 17 0.00042 16.7 5.1 30 60-89 83-115 (424)
122 PRK06445 acetyl-CoA acetyltran 53.5 14 0.00036 17.2 3.0 63 61-127 34-101 (394)
123 PRK06366 acetyl-CoA acetyltran 53.4 11 0.00028 18.0 2.4 77 43-126 13-93 (388)
124 PRK03348 DNA polymerase IV; Pr 53.2 16 0.0004 16.9 3.2 51 281-331 255-328 (456)
125 TIGR01063 gyrA DNA gyrase, A s 53.0 15 0.00038 17.0 3.0 97 34-136 89-211 (864)
126 PRK13410 molecular chaperone D 52.9 17 0.00043 16.6 15.4 169 136-330 188-379 (719)
127 PRK11133 serB phosphoserine ph 52.6 17 0.00044 16.6 3.8 14 170-183 124-137 (322)
128 PRK05952 3-oxoacyl-(acyl carri 52.6 17 0.00044 16.6 5.0 31 61-91 58-89 (379)
129 COG3414 SgaB Phosphotransferas 52.5 13 0.00034 17.3 2.7 43 277-320 6-48 (93)
130 COG1448 TyrB Aspartate/tyrosin 52.2 17 0.00044 16.5 3.8 40 68-107 79-118 (396)
131 PRK11617 endonuclease V; Provi 51.6 18 0.00045 16.5 4.9 101 5-119 28-132 (223)
132 TIGR00289 TIGR00289 conserved 51.5 7.3 0.00019 19.1 1.2 52 235-307 70-121 (227)
133 PRK09864 putative fructose-spe 50.8 18 0.00047 16.4 3.4 46 273-318 250-296 (356)
134 PRK12404 stage V sporulation p 50.6 18 0.00047 16.4 5.1 114 58-179 53-204 (334)
135 PRK09258 3-oxoacyl-(acyl carri 50.2 19 0.00048 16.3 4.0 57 62-119 59-116 (339)
136 PHA02517 putative transposase 49.9 19 0.00048 16.3 4.0 41 287-327 177-217 (273)
137 pfam10079 DUF2317 Uncharacteri 49.8 18 0.00046 16.4 3.1 39 79-117 81-128 (541)
138 PRK07157 acetate kinase; Provi 49.7 19 0.00049 16.3 20.0 80 216-304 271-351 (398)
139 PRK09409 insertion element IS2 49.5 19 0.00049 16.3 4.1 25 143-167 140-164 (301)
140 pfam11543 UN_NPL4 Nuclear pore 49.2 19 0.00049 16.2 3.6 39 147-185 4-42 (80)
141 PRK05561 DNA topoisomerase IV 48.6 6.1 0.00016 19.7 0.5 94 12-115 85-188 (745)
142 TIGR01110 mdcA malonate decarb 48.5 12 0.0003 17.7 1.9 19 212-230 94-113 (551)
143 PRK12397 propionate kinase; Re 48.1 20 0.00051 16.1 6.8 78 216-303 274-352 (404)
144 PRK06364 consensus 47.7 20 0.00052 16.1 4.0 63 60-122 26-91 (389)
145 PRK11678 putative chaperone; P 47.6 20 0.00052 16.1 10.1 50 249-298 375-424 (450)
146 KOG1395 consensus 47.6 8.2 0.00021 18.8 1.0 49 148-196 162-213 (477)
147 TIGR01311 glycerol_kin glycero 47.3 21 0.00053 16.0 7.0 297 6-327 1-474 (518)
148 cd01743 GATase1_Anthranilate_S 47.2 13 0.00034 17.3 2.0 39 78-118 40-78 (184)
149 CHL00094 dnaK heat shock prote 47.1 21 0.00053 16.0 14.5 169 136-330 188-379 (622)
150 pfam07114 DUF1370 Protein of u 47.0 21 0.00053 16.0 4.4 44 59-106 5-54 (187)
151 COG4020 Uncharacterized protei 46.8 21 0.00054 16.0 6.9 66 4-91 1-68 (332)
152 pfam03214 RGP Reversibly glyco 46.8 16 0.0004 16.9 2.3 58 55-115 116-173 (349)
153 PRK13979 DNA topoisomerase IV 46.7 15 0.00038 17.0 2.2 94 12-115 88-191 (959)
154 PRK12310 hydroxylamine reducta 46.6 12 0.00031 17.7 1.7 112 231-351 238-375 (429)
155 COG0512 PabA Anthranilate/para 46.3 19 0.00048 16.3 2.7 49 79-129 44-95 (191)
156 PRK07204 3-oxoacyl-(acyl carri 46.0 22 0.00055 15.9 9.3 58 60-119 53-113 (329)
157 TIGR03233 DNA_S_dndB DNA sulfu 45.7 13 0.00034 17.4 1.8 79 214-292 205-288 (355)
158 smart00268 ACTIN Actin. ACTIN 43.2 24 0.00061 15.6 2.8 87 61-154 75-162 (373)
159 PRK12880 3-oxoacyl-(acyl carri 43.0 24 0.00061 15.6 4.0 57 61-119 62-120 (353)
160 pfam01902 ATP_bind_4 ATP-bindi 43.0 24 0.00061 15.6 5.3 36 273-310 85-120 (219)
161 TIGR00884 guaA_Cterm GMP synth 42.6 11 0.00028 17.9 1.0 58 46-122 23-82 (319)
162 PRK08256 lipid-transfer protei 42.5 24 0.00062 15.5 4.4 60 60-123 23-82 (391)
163 pfam05385 Adeno_E4 Mastadenovi 42.1 15 0.00037 17.1 1.6 20 306-325 6-25 (109)
164 KOG1794 consensus 42.0 25 0.00063 15.5 7.9 289 4-323 1-314 (336)
165 cd00825 decarbox_cond_enzymes 41.7 25 0.00064 15.5 5.0 19 64-82 16-34 (332)
166 PRK06501 3-oxoacyl-(acyl carri 41.7 25 0.00064 15.5 5.0 22 61-82 77-98 (425)
167 TIGR02418 acolac_catab acetola 41.4 21 0.00055 15.9 2.3 52 48-104 38-89 (553)
168 COG0188 GyrA Type IIA topoisom 41.3 4.3 0.00011 20.7 -1.2 116 12-142 82-224 (804)
169 PRK07491 consensus 41.2 25 0.00065 15.4 3.8 77 43-126 14-94 (392)
170 TIGR00747 fabH 3-oxoacyl-(acyl 41.2 19 0.00048 16.3 2.0 239 42-331 31-304 (329)
171 TIGR00382 clpX ATP-dependent C 41.1 18 0.00046 16.5 1.9 80 5-114 100-180 (452)
172 cd01744 GATase1_CPSase Small c 40.9 26 0.00066 15.4 3.0 49 80-129 39-90 (178)
173 PRK07058 acetate kinase; Provi 40.9 26 0.00066 15.4 6.5 53 251-304 297-350 (393)
174 pfam08751 TrwC TrwC relaxase. 40.8 26 0.00066 15.4 6.1 87 166-261 23-119 (288)
175 cd01994 Alpha_ANH_like_IV This 40.7 26 0.00066 15.3 5.8 37 273-311 88-124 (194)
176 pfam00195 Chal_sti_synt_N Chal 40.5 26 0.00066 15.3 4.9 56 64-121 107-163 (228)
177 TIGR02712 urea_carbox urea car 40.4 26 0.00067 15.3 4.6 84 100-195 115-202 (1226)
178 COG2102 Predicted ATPases of P 40.2 26 0.00067 15.3 3.8 31 277-308 89-119 (223)
179 PRK07910 3-oxoacyl-(acyl carri 39.4 27 0.00069 15.2 5.2 40 51-91 76-115 (418)
180 PRK09630 DNA topoisomerase IV 39.3 27 0.00069 15.2 2.9 100 37-136 82-192 (479)
181 COG4953 PbpC Membrane carboxyp 39.1 11 0.00027 18.0 0.5 150 18-167 294-465 (733)
182 COG3457 Predicted amino acid r 39.1 20 0.0005 16.2 1.9 91 78-181 26-116 (353)
183 PRK09268 acetyl-CoA acetyltran 38.9 28 0.0007 15.2 4.5 77 43-126 18-98 (428)
184 pfam02803 Thiolase_C Thiolase, 38.9 25 0.00064 15.4 2.4 26 62-87 23-48 (123)
185 pfam02801 Ketoacyl-synt_C Beta 38.7 28 0.00071 15.1 2.6 65 62-127 26-92 (117)
186 PRK06840 hypothetical protein; 38.7 28 0.00071 15.1 9.3 56 62-119 56-113 (337)
187 PRK05656 acetyl-CoA acetyltran 38.7 28 0.00071 15.1 4.1 140 43-195 13-180 (392)
188 pfam04312 DUF460 Protein of un 38.2 28 0.00072 15.1 3.4 28 4-35 30-57 (138)
189 PRK06363 consensus 38.0 28 0.00073 15.1 4.3 63 60-122 23-88 (387)
190 COG5146 PanK Pantothenate kina 37.6 29 0.00073 15.0 10.0 211 58-297 54-301 (342)
191 cd03586 Pol_IV_kappa Pol_IV_ka 35.9 31 0.00078 14.9 3.6 21 311-331 301-321 (337)
192 COG1880 CdhB CO dehydrogenase/ 35.2 31 0.0008 14.8 4.0 46 275-320 37-82 (170)
193 TIGR00430 Q_tRNA_tgt queuine t 35.1 30 0.00077 14.9 2.3 17 209-225 89-107 (415)
194 TIGR01090 apt adenine phosphor 34.9 24 0.0006 15.6 1.7 56 59-136 31-88 (175)
195 cd00830 KAS_III Ketoacyl-acyl 34.7 32 0.00081 14.7 9.6 55 62-119 53-109 (320)
196 PRK07801 acetyl-CoA acetyltran 34.1 33 0.00083 14.7 3.6 75 44-126 14-94 (382)
197 pfam00117 GATase Glutamine ami 34.0 33 0.00083 14.7 2.9 39 78-117 39-77 (187)
198 PRK08041 consensus 34.0 33 0.00084 14.6 4.2 140 43-195 13-180 (391)
199 cd00327 cond_enzymes Condensin 33.9 33 0.00084 14.6 4.7 54 63-121 11-68 (254)
200 cd00133 PTS_IIB PTS_IIB: subun 33.8 33 0.00084 14.6 3.9 36 276-311 3-38 (84)
201 PRK01216 DNA polymerase IV; Va 33.7 33 0.00085 14.6 3.2 19 6-24 1-19 (351)
202 KOG1224 consensus 33.1 34 0.00086 14.5 3.1 39 79-118 63-102 (767)
203 TIGR01127 ilvA_1Cterm threonin 33.0 19 0.00047 16.4 0.9 36 274-309 277-316 (381)
204 PRK07025 consensus 32.9 34 0.00087 14.5 4.1 76 43-125 13-92 (393)
205 TIGR00263 trpB tryptophan synt 32.9 19 0.00049 16.2 1.0 143 84-260 49-217 (412)
206 PRK13927 rod shape-determining 32.7 34 0.00088 14.5 15.2 85 240-328 249-336 (338)
207 TIGR02814 pfaD_fam PfaD family 32.3 13 0.00034 17.3 0.1 27 51-77 144-170 (449)
208 TIGR00566 trpG_papA glutamine 32.3 35 0.00089 14.5 2.5 102 49-157 28-162 (212)
209 COG0505 CarA Carbamoylphosphat 31.7 36 0.00091 14.4 3.6 36 81-117 221-256 (368)
210 pfam08392 FAE1_CUT1_RppA FAE1/ 31.7 36 0.00091 14.4 4.6 36 55-90 79-114 (290)
211 TIGR01701 Fdhalpha-like oxidor 31.6 24 0.00062 15.5 1.4 89 80-185 46-151 (824)
212 PRK09185 3-oxoacyl-(acyl carri 31.5 36 0.00092 14.4 4.8 35 315-349 325-363 (395)
213 PRK07898 consensus 31.4 36 0.00092 14.4 9.7 126 90-230 92-220 (902)
214 PRK07456 consensus 31.4 36 0.00092 14.4 5.4 113 89-201 87-205 (975)
215 pfam01890 CbiG_C Cobalamin syn 31.3 36 0.00092 14.4 4.1 48 61-119 15-66 (121)
216 PRK05963 3-oxoacyl-(acyl carri 31.0 37 0.00093 14.3 6.2 57 62-121 56-114 (327)
217 KOG1785 consensus 31.0 29 0.00074 15.0 1.7 12 116-127 148-159 (563)
218 PRK04175 rpl7ae 50S ribosomal 30.9 37 0.00093 14.3 5.1 37 273-310 47-83 (123)
219 PRK04262 hypothetical protein; 30.9 37 0.00093 14.3 2.8 55 64-120 56-112 (346)
220 PRK03858 DNA polymerase IV; Va 30.9 37 0.00093 14.3 3.3 20 311-330 304-323 (398)
221 cd06259 YdcF-like YdcF-like. Y 30.5 37 0.00095 14.3 3.8 18 284-302 102-119 (150)
222 PRK13962 bifunctional phosphog 30.1 38 0.00096 14.2 4.0 21 101-121 76-96 (653)
223 PRK03352 DNA polymerase IV; Va 29.9 38 0.00097 14.2 4.3 24 2-25 1-24 (345)
224 TIGR02372 4_coum_CoA_lig 4-cou 29.6 28 0.00072 15.1 1.4 46 85-130 125-180 (416)
225 TIGR01369 CPSaseII_lrg carbamo 29.5 18 0.00045 16.5 0.4 35 273-308 961-995 (1089)
226 PRK08007 para-aminobenzoate sy 29.3 39 0.00099 14.1 2.1 47 80-128 43-92 (187)
227 PRK12879 3-oxoacyl-(acyl carri 29.1 39 0.001 14.1 7.7 55 62-119 56-112 (326)
228 PRK02406 DNA polymerase IV; Va 29.1 39 0.001 14.1 3.4 25 1-25 1-25 (355)
229 PRK07515 3-oxoacyl-(acyl carri 29.0 39 0.001 14.1 4.0 33 63-95 99-133 (372)
230 TIGR01373 soxB sarcosine oxida 28.8 38 0.00098 14.2 2.0 92 72-168 205-300 (407)
231 cd02071 MM_CoA_mut_B12_BD meth 28.8 16 0.0004 16.8 -0.0 85 213-310 27-111 (122)
232 KOG2926 consensus 28.7 40 0.001 14.1 3.6 28 273-300 231-258 (386)
233 pfam03988 DUF347 Repeat of Unk 28.5 19 0.00048 16.3 0.4 30 159-191 7-36 (55)
234 PRK03922 hypothetical protein; 28.2 26 0.00066 15.4 1.0 20 162-181 17-36 (113)
235 KOG1391 consensus 28.1 41 0.001 14.0 2.6 76 43-125 15-95 (396)
236 KOG1394 consensus 28.1 41 0.001 14.0 4.2 64 62-126 97-172 (440)
237 PRK09352 3-oxoacyl-(acyl carri 27.8 41 0.0011 14.0 5.8 55 62-119 55-111 (319)
238 pfam04475 DUF555 Protein of un 27.6 27 0.00069 15.2 1.0 20 162-181 16-35 (102)
239 COG0332 FabH 3-oxoacyl-[acyl-c 27.4 42 0.0011 13.9 3.3 47 45-91 35-85 (323)
240 PRK05637 anthranilate synthase 27.4 42 0.0011 13.9 2.4 48 80-129 44-94 (208)
241 COG0616 SppA Periplasmic serin 27.4 42 0.0011 13.9 2.8 11 289-299 262-272 (317)
242 cd01701 Pol_zeta Pol_zeta, a m 27.3 42 0.0011 13.9 2.7 23 308-330 366-388 (405)
243 CHL00203 fabH 3-oxoacyl-acyl-c 27.3 42 0.0011 13.9 6.4 34 62-95 52-86 (327)
244 PRK09209 ribonucleotide-diphos 27.2 41 0.0011 14.0 1.9 11 44-54 306-316 (785)
245 PRK09050 beta-ketoadipyl CoA t 27.0 43 0.0011 13.9 2.5 73 43-123 13-92 (401)
246 TIGR02939 RpoE_Sigma70 RNA pol 27.0 34 0.00086 14.6 1.4 35 83-130 62-98 (192)
247 PRK05562 precorrin-2 dehydroge 26.5 19 0.0005 16.2 0.1 66 157-230 85-152 (222)
248 PRK08131 acetyl-CoA acetyltran 26.5 43 0.0011 13.8 5.4 125 60-195 27-185 (401)
249 TIGR00169 leuB 3-isopropylmala 26.3 42 0.0011 13.9 1.8 58 256-319 171-233 (370)
250 PRK06504 acetyl-CoA acetyltran 26.3 44 0.0011 13.8 3.7 78 43-127 13-95 (390)
251 TIGR00232 tktlase_bact transke 26.1 44 0.0011 13.8 3.1 37 81-117 102-140 (675)
252 PRK06205 acetyl-CoA acetyltran 26.0 44 0.0011 13.7 3.7 72 43-123 13-90 (404)
253 PRK13359 beta-ketoadipyl CoA t 25.9 44 0.0011 13.7 2.7 75 44-126 14-95 (400)
254 cd05565 PTS_IIB_lactose PTS_II 25.7 45 0.0011 13.7 3.6 33 275-310 49-81 (99)
255 cd01914 HCP Hybrid cluster pro 25.7 35 0.00089 14.5 1.3 98 239-344 242-365 (423)
256 PRK06690 acetyl-CoA acetyltran 25.6 45 0.0011 13.7 2.5 106 78-195 41-156 (361)
257 cd07018 S49_SppA_67K_type Sign 25.6 45 0.0012 13.7 6.5 50 61-117 32-84 (222)
258 PRK07027 cobalamin biosynthesi 25.5 45 0.0012 13.7 4.7 50 61-121 17-70 (126)
259 PRK09954 hypothetical protein; 25.4 45 0.0012 13.7 2.1 31 84-115 79-111 (362)
260 KOG3339 consensus 25.2 31 0.00078 14.9 0.9 15 134-148 38-52 (211)
261 cd00424 Pol_Y Y-family of DNA 25.1 46 0.0012 13.6 3.2 23 309-331 303-325 (341)
262 PRK08242 acetyl-CoA acetyltran 25.1 46 0.0012 13.6 2.7 59 60-123 29-93 (402)
263 PTZ00050 3-oxoacyl-acyl carrie 24.9 46 0.0012 13.6 5.0 31 62-92 137-169 (477)
264 PRK06774 para-aminobenzoate sy 24.8 47 0.0012 13.6 5.6 48 80-129 43-93 (191)
265 PRK07300 consensus 24.6 47 0.0012 13.6 10.6 129 90-233 84-217 (880)
266 PRK06631 consensus 24.5 47 0.0012 13.6 4.3 41 1-43 1-48 (229)
267 cd00834 KAS_I_II Beta-ketoacyl 24.3 47 0.0012 13.5 4.6 23 60-82 72-94 (406)
268 PRK05755 DNA polymerase I; Pro 24.3 48 0.0012 13.5 7.6 135 52-201 33-186 (889)
269 pfam00205 TPP_enzyme_M Thiamin 24.3 48 0.0012 13.5 4.0 35 276-310 14-48 (138)
270 COG0146 HyuB N-methylhydantoin 24.2 32 0.00083 14.7 0.9 17 17-36 39-55 (563)
271 KOG3147 consensus 24.1 48 0.0012 13.5 4.9 13 168-180 119-131 (252)
272 PRK06633 acetyl-CoA acetyltran 24.0 48 0.0012 13.5 3.8 74 43-123 14-91 (392)
273 COG0058 GlgP Glucan phosphoryl 24.0 48 0.0012 13.5 2.6 52 66-120 89-141 (750)
274 cd03147 GATase1_Ydr533c_like T 23.9 48 0.0012 13.5 1.7 60 68-127 82-143 (231)
275 PRK07765 para-aminobenzoate sy 23.6 49 0.0012 13.4 2.2 50 79-129 45-97 (221)
276 pfam00108 Thiolase_N Thiolase, 23.6 49 0.0012 13.4 4.2 62 60-125 27-92 (264)
277 PRK10886 DnaA initiator-associ 23.5 49 0.0013 13.4 5.6 24 118-141 57-80 (196)
278 PRK07851 acetyl-CoA acetyltran 23.4 49 0.0013 13.4 2.6 59 61-123 29-92 (405)
279 CHL00101 trpG anthranilate syn 23.4 49 0.0013 13.4 5.8 85 80-166 43-149 (190)
280 pfam09839 DUF2066 Uncharacteri 23.1 50 0.0013 13.4 2.3 32 153-184 110-141 (234)
281 PRK01022 hypothetical protein; 23.0 19 0.00048 16.3 -0.5 10 281-290 72-81 (168)
282 cd01702 Pol_eta Pol eta is mem 23.0 50 0.0013 13.4 2.0 17 314-330 321-337 (358)
283 PRK07625 consensus 22.9 51 0.0013 13.3 8.3 125 90-231 81-206 (922)
284 COG0830 UreF Urease accessory 22.8 41 0.001 14.0 1.2 19 239-257 148-166 (229)
285 pfam02698 DUF218 DUF218 domain 22.6 51 0.0013 13.3 3.1 37 273-313 90-126 (148)
286 TIGR00338 serB phosphoserine p 22.6 51 0.0013 13.3 3.0 24 271-294 100-124 (223)
287 PTZ00004 actin; Provisional 22.4 52 0.0013 13.3 4.5 50 274-329 294-348 (375)
288 pfam00022 Actin Actin. 22.4 52 0.0013 13.3 3.3 51 274-329 287-342 (369)
289 PRK08857 para-aminobenzoate sy 22.3 52 0.0013 13.3 2.0 48 80-129 43-93 (192)
290 COG5153 CVT17 Putative lipase 22.1 39 0.001 14.1 1.0 17 73-89 74-90 (425)
291 KOG4540 consensus 22.1 39 0.001 14.1 1.0 17 73-89 74-90 (425)
292 TIGR01715 phage_lam_T phage ta 22.0 33 0.00085 14.6 0.6 21 213-233 45-65 (111)
293 COG1363 FrvX Cellulase M and r 22.0 53 0.0013 13.2 2.7 38 280-318 263-301 (355)
294 TIGR03279 cyano_FeS_chp putati 21.9 22 0.00056 15.8 -0.3 42 274-315 319-362 (433)
295 cd07023 S49_Sppa_N_C Signal pe 21.5 54 0.0014 13.2 6.0 51 60-117 19-72 (208)
296 pfam04493 Endonuclease_5 Endon 21.4 54 0.0014 13.1 3.8 99 5-117 21-122 (205)
297 PTZ00009 heat shock 70 kDa pro 21.3 54 0.0014 13.1 13.8 168 137-330 196-384 (657)
298 PRK08768 consensus 21.2 55 0.0014 13.1 5.0 22 61-82 75-96 (411)
299 pfam02741 FTR_C FTR, proximal 21.1 49 0.0013 13.4 1.3 54 156-212 19-77 (150)
300 cd02072 Glm_B12_BD B12 binding 21.0 27 0.0007 15.2 -0.0 90 212-310 26-117 (128)
301 PRK13566 anthranilate synthase 20.9 55 0.0014 13.1 2.3 16 165-180 236-251 (724)
302 PRK08170 acetyl-CoA acetyltran 20.7 56 0.0014 13.1 5.3 62 60-126 28-94 (426)
303 COG4972 PilM Tfp pilus assembl 20.7 56 0.0014 13.1 5.8 66 249-317 262-329 (354)
304 PRK09961 exoaminopeptidase; Pr 20.4 57 0.0014 13.0 3.2 41 279-319 248-289 (345)
305 PRK08963 fadI 3-ketoacyl-CoA t 20.4 57 0.0014 13.0 6.1 74 43-123 24-101 (436)
306 TIGR01198 pgl 6-phosphoglucono 20.3 57 0.0014 13.0 5.6 77 248-330 9-90 (251)
307 PRK09116 3-oxoacyl-(acyl carri 20.2 57 0.0015 13.0 5.0 30 63-92 8-40 (336)
308 PRK05183 hscA chaperone protei 20.1 57 0.0015 13.0 20.0 166 136-330 203-384 (621)
309 PRK05920 aromatic acid decarbo 20.0 58 0.0015 13.0 1.6 11 1-11 1-11 (205)
No 1
>PRK09604 putative DNA-binding/iron metalloprotein/AP endonuclease; Reviewed
Probab=100.00 E-value=0 Score=872.41 Aligned_cols=334 Identities=49% Similarity=0.813 Sum_probs=322.5
Q ss_pred CEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 46887502602207788733888841898873113346212187145599999999699999999998389822453687
Q gi|254781038|r 6 KTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIA 85 (363)
Q Consensus 6 ~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Ia 85 (363)
|+||||||||||||+||++ .+++|++|.+.||.+.|.+||||+||+|+|+|.++|+++++++|++++++++|||+||
T Consensus 1 m~iLgIETSCDdTsvaiv~---~~~~il~~~~~sq~~~h~~~GGvvPe~Asr~H~~~i~~lv~~al~~a~i~~~~id~IA 77 (335)
T PRK09604 1 MLILGIESSCDETGVAIVD---NGRKILANVVASQIEEHARYGGVVPELASRHHVEALPPLLEEALKEAGLSLEDIDAIA 77 (335)
T ss_pred CEEEEEECCCCCEEEEEEE---CCCCEEEEEEEECHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEE
T ss_conf 9499998772001799997---9891889877601332268799990999999999999999999986599987897899
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEECCCCC
Q ss_conf 40664301256779999999887514864333036776530132256799843999706874799983756430002233
Q gi|254781038|r 86 VTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTI 165 (363)
Q Consensus 86 vt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~ 165 (363)
||.||||++||+||+++||+||++|++|++||||||||++++++.++++||||+|+||||||+|+++++..+|++||+|+
T Consensus 78 vT~gPGL~g~L~VG~~~Ak~La~~~~~Pli~VnH~~gHi~~~~l~~~~~~Pfl~LlvSGGhT~l~~~~~~~~~~ilG~T~ 157 (335)
T PRK09604 78 VTAGPGLVGALLVGATAAKALALALNKPLIGVNHLEGHLLAARLEKPLEFPFLALLVSGGHTQLVAVKGVGDYEILGETL 157 (335)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEC
T ss_conf 94799961139999999999999809982411257777766540468999858999806846999984797479987761
Q ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 63002388889885288761035566655405733345861110688754221024589999998511201210688999
Q gi|254781038|r 166 DDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADICA 245 (363)
Q Consensus 166 Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaa 245 (363)
|||+||+|||+||+|||||||||+||++|++|+++.|+||+|+.+.++||||||||||+++|++++.+. +++++.|||+
T Consensus 158 Dda~GeafDKvar~LGL~yPgGp~ie~lA~~g~~~~~~~P~~~~~~~~~dfSFSGlkTav~~~i~~~~~-~~~~~~diaa 236 (335)
T PRK09604 158 DDAAGEAFDKVARLLGLGYPGGPKIDKLAEKGDPEAFDFPRPMKGRPGLDFSFSGLKTAVLNLIEKNKQ-KEQTKADIAA 236 (335)
T ss_pred CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC-CCCCHHHHHH
T ss_conf 551177899999872999998669999998289231277842038998756141099999999985444-5566999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHHH
Q ss_conf 99999999999999999999876214455236541334587999999999998689889962878877258999999999
Q gi|254781038|r 246 SFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAWAALE 325 (363)
Q Consensus 246 sfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ag~~ 325 (363)
|||++++++|++|+++|++.+ ++++++++||||||++||++|+++++++++++++||++|||||||||||+|++
T Consensus 237 sfQ~~i~~~L~~k~~~A~~~~------~~k~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ag~~ 310 (335)
T PRK09604 237 SFQEAVVDVLVEKTKRALKKT------GVKTLVVAGGVAANSYLREKLAELCKKRGIEVYIPPLELCTDNGAMIAYAGAE 310 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------CCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCHHHHHHHHHHHH
T ss_conf 999999999999999999997------99879994647777999999999999749989808979751479999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9984999887620023578787577
Q gi|254781038|r 326 RMEAGLPADDLSISPRSRWPLDEKA 350 (363)
Q Consensus 326 ~~~~g~~~~~~~~~~~~rw~ld~~a 350 (363)
+|++|. .+++++.++||||||+..
T Consensus 311 ~~~~g~-~~~l~~~~~prw~ld~~~ 334 (335)
T PRK09604 311 RYKKGP-FSPLDLNVRPRWPLDEVP 334 (335)
T ss_pred HHHCCC-CCCCCCCCCCCCCCCCCC
T ss_conf 997599-999976223799721288
No 2
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=0 Score=850.75 Aligned_cols=339 Identities=49% Similarity=0.778 Sum_probs=324.1
Q ss_pred CEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 46887502602207788733888841898873113346212187145599999999699999999998389822453687
Q gi|254781038|r 6 KTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIA 85 (363)
Q Consensus 6 ~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Ia 85 (363)
|+|||||||||||||||+++++ |++|.+.||++.|.+|||||||+|+|+|.++|+++++++|.++++++.|||+||
T Consensus 1 m~iLGIEtScDeT~vaIv~~~~----ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA 76 (342)
T COG0533 1 MIILGIETSCDETGVAIVDEEK----ILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIA 76 (342)
T ss_pred CEEEEEECCCCCCEEEEEECCC----HHHEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCCEEE
T ss_conf 9689987465652368984467----412002420002678899083088999999899999999998499830188899
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEECCCCC
Q ss_conf 40664301256779999999887514864333036776530132256799843999706874799983756430002233
Q gi|254781038|r 86 VTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTI 165 (363)
Q Consensus 86 vt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~ 165 (363)
||.||||.++|+||+++||+||++|++|+||||||+||++++++.++..|||++|+||||||||+++++.++|+++|+|+
T Consensus 77 ~T~gPGL~gaL~VG~~~Ak~LA~a~~kPli~VnH~~gHi~a~~l~~~~~~p~v~LlVSGGHTqli~~~~~g~y~ilGeTl 156 (342)
T COG0533 77 VTAGPGLGGALLVGATAAKALALALNKPLIPVNHLEGHIEAARLETGLAFPPVALLVSGGHTQLIAVRGIGRYEVLGETL 156 (342)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEC
T ss_conf 81699944778999999999999829997231227988878875247889817999955854999984899589873002
Q ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCC---CCCCCHHH
Q ss_conf 630023888898852887610355666554057333458611106887542210245899999985112---01210688
Q gi|254781038|r 166 DDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDV---LEKQDIAD 242 (363)
Q Consensus 166 Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~---~~~~~~~d 242 (363)
|||+||+|||+||+|||||||||.||++|++|+++.|.||+|++++.++|||||||||++++++++.+. ..+++++|
T Consensus 157 DdA~Gea~DKvAR~lGL~yPGGp~Ie~lA~~G~~~~~~fP~~~~~~~~~DfSFSGLkTa~~~~~~~~~~~~~~~~~d~~d 236 (342)
T COG0533 157 DDAAGEAFDKVARLLGLGYPGGPAIEKLAKKGDPDAFEFPRPMVKGKNLDFSFSGLKTAVLRLLKKLKQKEELNEEDKED 236 (342)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 55413788999998089999947999998549987214885556899853541859999999998503344654103999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHH
Q ss_conf 99999999999999999999999876214455236541334587999999999998689889962878877258999999
Q gi|254781038|r 243 ICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAWA 322 (363)
Q Consensus 243 iaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~a 322 (363)
||+|||++++++|++|++||+..+ +.++++++||||||++||++++++|+.+|+++++||++|||||||||||+
T Consensus 237 ia~sfQ~av~~~L~~kt~rAl~~~------~~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~~~lCtDNaaMIA~a 310 (342)
T COG0533 237 IAASFQEAVFDMLVEKTERALKHT------GKKELVIAGGVAANSRLREMLEEMCKERGAEVYIPPLELCTDNAAMIAYA 310 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------CCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCCHHHCCCHHHHHHHH
T ss_conf 999999999999999999999980------99989993558775999999999887469889818847436519999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999849998876200235787875775345
Q gi|254781038|r 323 ALERMEAGLPADDLSISPRSRWPLDEKAPSKI 354 (363)
Q Consensus 323 g~~~~~~g~~~~~~~~~~~~rw~ld~~a~~~~ 354 (363)
|+++|++|...+++++.++||||+|+....|.
T Consensus 311 g~~~~~~g~~~~~~~~~~~~r~~~~~~~~~~~ 342 (342)
T COG0533 311 GLLRYKAGRFISPLDVNVRPRWRLDEVDAPWR 342 (342)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCC
T ss_conf 99999807999974434677985132133559
No 3
>PTZ00340 O-sialoglycoprotein endopeptidase; Provisional
Probab=100.00 E-value=0 Score=819.41 Aligned_cols=334 Identities=29% Similarity=0.417 Sum_probs=308.1
Q ss_pred CCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 88468875026022077887338888418988731133462121871455999999996999999999983898224536
Q gi|254781038|r 4 IKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDS 83 (363)
Q Consensus 4 ~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~ 83 (363)
++|+||||||||||||+||++ ++++|++|.+.+|+ |.++||||||+|+|+|.++|+++++++|++++++++|||+
T Consensus 6 k~mliLgIETSCDdTsvAiv~---~~~~il~~~~~s~~--~~~~gGVvPe~Asr~H~~~i~~lv~~aL~~a~i~~~did~ 80 (348)
T PTZ00340 6 KRFLALGIEGSANKIGVGIVD---GDGEVLSNVRETYI--TPPGEGFLPRETAQHHRQHILSLVQEALEEAGITLSDISL 80 (348)
T ss_pred CCCEEEEEECCCCCCEEEEEE---CCCEEEEEEEEECC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCE
T ss_conf 137799998555010689997---98918886521056--6888985829999999999999999999985998411857
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEECCC
Q ss_conf 87406643012567799999998875148643330367765301322567998439997068747999837564300022
Q gi|254781038|r 84 IAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGT 163 (363)
Q Consensus 84 Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~ 163 (363)
||||+||||.+||+||+++||+||++|++|++||||||||++++++.++.+||+ .|+||||||||+ +.+..+|++||+
T Consensus 81 IAvT~gPGL~g~L~VG~~~AK~La~~~~~Pli~VnHlegHi~~~~l~~~~~~P~-~LlVSGGHT~ll-~~~~~~~~ilG~ 158 (348)
T PTZ00340 81 ICYTKGPGMGAPLAVGATVAKTLSLLWGKPLVGVNHCVAHIEMGRLVTGSENPV-VLYVSGGNTQVI-AYSEKRYRVFGE 158 (348)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCCCCE-EEEECCCCEEEE-EECCCEEEEEEE
T ss_conf 997279985165899999999999980998352130243342121037987856-999868976999-986861789766
Q ss_pred CCCCCHHHHHHHHHHHCCCC-CCH-HHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC-----
Q ss_conf 33630023888898852887-610-35566655405733345861110688754221024589999998511201-----
Q gi|254781038|r 164 TIDDALGECFDKIAKSLGLP-YPG-GVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLE----- 236 (363)
Q Consensus 164 T~Dda~Ge~~DK~ar~Lgl~-yPg-Gp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~----- 236 (363)
|+|||+||||||+||+|||| ||| ||.||++|+++++ .|+||+|+ +++|||||||||+++|++++.....
T Consensus 159 T~DdA~GEafDKvAr~LgLp~~pgpG~~ie~lA~~g~~-~~~~P~~~---k~~dfSFSGLKTav~~~i~~~~~~~~~~~~ 234 (348)
T PTZ00340 159 TIDIAVGNCLDRFARLLNISNDPAPGYNIEQLAKKGKN-LIELPYVV---KGMDMSFSGILTYIEQLVEAKLLSSENSPP 234 (348)
T ss_pred ECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC-CCCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 52653057999999980898789858999998645984-57699789---998163754899999999986640344433
Q ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCC
Q ss_conf --210688999999999999999999999998762144552365413345879999999999986898899628788772
Q gi|254781038|r 237 --KQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTD 314 (363)
Q Consensus 237 --~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctD 314 (363)
+.++.|+|+|||++++++|++|+++|+.++ +.++|+++||||||++||++|+++++++++++++||++||||
T Consensus 235 ~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~------~~~~lvv~GGVAaN~~LR~~l~~~~~~~~~~~~~P~~~~CTD 308 (348)
T PTZ00340 235 KEQLFTDDLCFSLQETLFAMLVEVTERAMSHC------GSNEVLIVGGVGCNLRLQEMMQQMAKERGGRLFAMDERYCID 308 (348)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHH
T ss_conf 00136999999999999999999999999987------889599956577769999999999998699897898788116
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5899999999999849998876200235787875775345
Q gi|254781038|r 315 NAVMIAWAALERMEAGLPADDLSISPRSRWPLDEKAPSKI 354 (363)
Q Consensus 315 NAaMIA~ag~~~~~~g~~~~~~~~~~~~rw~ld~~a~~~~ 354 (363)
|||||||+|+++|++|+..+..+..++||||+|+...+|.
T Consensus 309 NaaMIA~aG~~~~~~g~~~~l~~~~~~~r~~~d~v~~~~~ 348 (348)
T PTZ00340 309 NGAMIAYAGLLEYLSGGFTPLKEATVTQRFRTDQVDVTWR 348 (348)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCC
T ss_conf 8999999999999839999888786447897236788899
No 4
>PRK09605 O-sialoglycoprotein endopeptidase/protein kinase; Reviewed
Probab=100.00 E-value=0 Score=797.98 Aligned_cols=329 Identities=33% Similarity=0.500 Sum_probs=308.6
Q ss_pred CCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 84688750260220778873388884189887311334621218714559999999969999999999838982245368
Q gi|254781038|r 5 KKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSI 84 (363)
Q Consensus 5 ~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~I 84 (363)
.|+|||||||||+||+||| |++++||+|.+.++. .++|||+||+|+|+|.++++++++++|++++++++|||+|
T Consensus 1 ~m~vLGIE~Sa~~~gv~iv---d~~g~il~n~~~~~~---p~~GGvvPe~Aar~H~~~i~~vv~~aL~~A~i~~~dIdaI 74 (536)
T PRK09605 1 DMIVLGIEGTAWKTSAGIV---DEDGEILANVSDPYK---PEVGGIHPREAAEHHAEAIPKVIKEALEEAGIKKGDIDLV 74 (536)
T ss_pred CCEEEEEECCCCCCEEEEE---CCCCCEEEEEEEEEE---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEE
T ss_conf 9389999867566179999---289988564213115---9999999089999999999999999999849998889899
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEECCCC
Q ss_conf 74066430125677999999988751486433303677653013225679984399970687479998375643000223
Q gi|254781038|r 85 AVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTT 164 (363)
Q Consensus 85 avt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T 164 (363)
|||.||||.+||+||+++||+||++|++|++|||||+||++++++.++..+| |+|+||||||||+.+.+ ++|+++|+|
T Consensus 75 A~T~GPGL~g~L~VG~~~Ak~La~~~~~PligVnH~~gHi~~~rl~~~~~~P-l~L~VSGGhTqii~~~~-g~y~ilGeT 152 (536)
T PRK09605 75 AFSQGPGLGPCLRVVATAARALALSLDVPLIGVNHCIAHVEIGRLTTGARDP-VTLYVSGGNTQVLAYLN-GRYRVFGET 152 (536)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHCCCCCCC-CEEEEECCCEEEEEECC-CEEEEECCC
T ss_conf 9906998178689999999999998499850034089887442310698788-56999768648999848-737983331
Q ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 36300238888988528876103556665540573334586111068875422102458999999851120121068899
Q gi|254781038|r 165 IDDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADIC 244 (363)
Q Consensus 165 ~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~dia 244 (363)
+|||+||||||+||+|||||||||.||++|+.|+ +.++||+++ ++||||||||||++.+.+++ .++++|+|
T Consensus 153 lDdA~GeafDK~AR~lgL~~PGGp~Ie~lA~~G~-~~~~lP~~~---kg~DfSFSGLkTa~~~~~~~-----~~~~~Dic 223 (536)
T PRK09605 153 LDIGIGNALDKFARHAGLPHPGGPKIEKLAKDGS-KYIELPYVV---KGMDLSFSGLLTAAKEAYDK-----GEPLEDVC 223 (536)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC-CCCCCCCCC---CCCCCCHHHHHHHHHHHHHC-----CCCHHHHH
T ss_conf 4367789899999981999999789999997188-668588757---89756617788999999985-----99889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHH
Q ss_conf 99999999999999999999987621445523654133458799999999999868988996287887725899999999
Q gi|254781038|r 245 ASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAWAAL 324 (363)
Q Consensus 245 asfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ag~ 324 (363)
+|||++++++|++|++||+..+ +.++|+++||||||++||++|+.+|+++|+++++||++|||||||||||+|+
T Consensus 224 aSfQe~i~~~L~e~t~rAl~~~------~~~~lvv~GGVaaN~~LR~~l~~~~~~~g~~~~~p~~~~CtDNgaMIA~aG~ 297 (536)
T PRK09605 224 YSLQETAFAMLVEVTERALAHT------GKDEVLLVGGVAANNRLREMLNVMCEERGAKFYVPEKRFCGDNGAMIAWLGL 297 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------CCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCCHHHCCHHHHHHHHHHH
T ss_conf 9999999999999999999974------9397999757887399999999999987999987987981238999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99984999887620023578787577534579
Q gi|254781038|r 325 ERMEAGLPADDLSISPRSRWPLDEKAPSKIGS 356 (363)
Q Consensus 325 ~~~~~g~~~~~~~~~~~~rw~ld~~a~~~~g~ 356 (363)
++|++|...+-.+....|||+.|+...+|..-
T Consensus 298 l~y~~G~~~~~~~~~~~~~~r~d~v~v~w~~~ 329 (536)
T PRK09605 298 LMYKSGKRMDIEDSRINPRFRTDEVEVTWIKE 329 (536)
T ss_pred HHHHCCCCCCHHHCCCCCCCCCCCEEEEECCC
T ss_conf 99977996678876444676356435650368
No 5
>TIGR00329 gcp metalloendopeptidase, putative, glycoprotease family; InterPro: IPR000905 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues . Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 , . Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion , . Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis . The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region .; GO: 0008450 O-sialoglycoprotein endopeptidase activity, 0006508 proteolysis.
Probab=100.00 E-value=0 Score=793.02 Aligned_cols=311 Identities=45% Similarity=0.738 Sum_probs=292.6
Q ss_pred EEEECCCHHHEEEEEECCC--CCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 8750260220778873388--88418988731133462121871455999999996999999999983898224536874
Q gi|254781038|r 9 IGIETSCDETAVAVVRRKD--SHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAV 86 (363)
Q Consensus 9 LgIETScd~tsvaiv~~~~--~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iav 86 (363)
|||||||||||||||++++ ...+|++|...+|...|.+|||||||+|+|+|.++|+++++++|++++++.++||+|||
T Consensus 1 LgIEtsCDdt~vaiv~~~~ksaa~~v~an~~~~~~~~H~~~GGvvPe~Asr~H~~~~~~L~~~Al~~~~~~~~~I~~IA~ 80 (337)
T TIGR00329 1 LGIETSCDDTGVAIVDEEDKSAAGNVLANIKISQIKLHAKYGGVVPELASRHHAENIPPLLERALKESNVDISEIDLIAV 80 (337)
T ss_pred CCCCCCHHHCEEEEEECCHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 98650142512423323303345556652135512410002893605899889998899999999982887010257898
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC---CCCCCEEEEEECCCEEEEEECCCCCCEECCC
Q ss_conf 0664301256779999999887514864333036776530132256---7998439997068747999837564300022
Q gi|254781038|r 87 TAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDD---IAFPYLVLLVSGGHTQILLVRDVAHYDRLGT 163 (363)
Q Consensus 87 t~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~---~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~ 163 (363)
|.||||.+||+||+++||+||++|++|+||||||+||+++++|.++ +++||++||||||||+|+.+++..+||+||+
T Consensus 81 t~~PGL~g~L~vGat~Ar~La~~l~kPligv~H~~GH~~~~~l~~~~~~~~~P~~~LlVSGGHT~~~~~~~~~~~e~~ge 160 (337)
T TIGR00329 81 TSGPGLGGALIVGATFARSLALSLDKPLIGVNHLLGHIYAPLLDTNLNQLQFPFVSLLVSGGHTQIIAVKGIGDYEILGE 160 (337)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEEEEEECCCCEEEEEE
T ss_conf 55879851468999999999898728955145789999887414777453667316777540115322304675789852
Q ss_pred CCCCCHHHHHHHHHHHCCCC-----CCHHHHH-HHHHHHCCCCCCCCCCHHCCCCC----CCCCCCHHHHHHHHHHHHHC
Q ss_conf 33630023888898852887-----6103556-66554057333458611106887----54221024589999998511
Q gi|254781038|r 164 TIDDALGECFDKIAKSLGLP-----YPGGVEI-EKAALMGDGKRFKFPCPLVQGTL----CDFSFSGLKTSVQKTICAFD 233 (363)
Q Consensus 164 T~Dda~Ge~~DK~ar~Lgl~-----yPgGp~i-e~~A~~g~~~~~~~P~p~~~~~~----~dFSFSGLkTav~~~i~~~~ 233 (363)
|+|||+||+|||+||+|||+ |||||.| |+++++++.++|.||.|+.+... +|||||||||++++.+++..
T Consensus 161 T~DdA~Ge~fDK~ar~~gl~Gt~iayPGGp~i~~~l~~~g~~~~f~~p~P~~~~~~~~~~lDfSFSGLkTa~~~~~~~~~ 240 (337)
T TIGR00329 161 TLDDAVGEAFDKVARLLGLGGTMIAYPGGPAIEEELAKKGDEKTFYFPLPLTKKPMKRNMLDFSFSGLKTAALRKLEKLK 240 (337)
T ss_pred EHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 02245424467777761889626506897426899854788775542666213688763403337899999999998743
Q ss_pred -------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCC----C
Q ss_conf -------20121068899999999999999999999999876214455236541334587999999999998689----8
Q gi|254781038|r 234 -------VLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHG----F 302 (363)
Q Consensus 234 -------~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~----~ 302 (363)
..++.++.|||++||++|+++|+++++||+..--.. -.+++.|+++||||||++||++|++++++++ +
T Consensus 241 ~rkt~~~~~~~~~~~diA~~fQ~~~~~~Li~~~kral~~qPek-f~~~~~~~~~GGVsaN~~LR~~l~~~~~~~~stsf~ 319 (337)
T TIGR00329 241 ERKTESSNLNEATKEDIAYSFQETAFDHLIEKTKRALKDQPEK-FTGPKELVLVGGVSANKRLREKLETLCQELNSTSFV 319 (337)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-HCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 3321035775101899999999999998899999998515054-317766999431888889999999999741783067
Q ss_pred EEEECCHHHCCCHHHHHH
Q ss_conf 899628788772589999
Q gi|254781038|r 303 RFVAPPARLCTDNAVMIA 320 (363)
Q Consensus 303 ~~~~P~~~~ctDNAaMIA 320 (363)
++|+||++||||||||||
T Consensus 320 ~~~~pp~~fC~DNgAMIa 337 (337)
T TIGR00329 320 EFYYPPLEFCSDNGAMIA 337 (337)
T ss_pred EEECCCCCCCCCCHHHCC
T ss_conf 751278333576122149
No 6
>KOG2707 consensus
Probab=100.00 E-value=0 Score=706.12 Aligned_cols=339 Identities=42% Similarity=0.653 Sum_probs=315.1
Q ss_pred EEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 68875026022077887338888418988731133462121871455999999996999999999983898224536874
Q gi|254781038|r 7 TVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAV 86 (363)
Q Consensus 7 ~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iav 86 (363)
.|||||||||||+|||| |+.++++++.+.+|...|.+||||+|..|..+|++||+++++++|.+|+.+..|+|+|||
T Consensus 33 ~VLgIETSCDDTavaVV---d~~~~~~~~~i~~~t~~~~~yGGI~P~~a~~~Hr~ni~~~iqral~aa~~~p~dldaIAV 109 (405)
T KOG2707 33 KVLGIETSCDDTAVAVV---DEFSHVLSSEIYSRTEIHRQYGGIIPTVAQLLHRENIPRLIQRALDAAGLSPKDLDAIAV 109 (405)
T ss_pred EEEEEECCCCCCEEEEE---CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 24567645476334444---461211320344566788861797974899999987889999999970899455116999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC-CCCCCCEEEEEECCCEEEEEECCCCCCEECCCCC
Q ss_conf 066430125677999999988751486433303677653013225-6799843999706874799983756430002233
Q gi|254781038|r 87 TAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTD-DIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTI 165 (363)
Q Consensus 87 t~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~-~~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~ 165 (363)
|+||||..+|+||+++||+||..|++|++||||||||+|+++|++ .+.|||++||||||||+|+++++..+|++||+|+
T Consensus 110 T~gPGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl~~~~v~FPFl~lLvSGGH~llvla~~~~~~~llg~Tv 189 (405)
T KOG2707 110 TRGPGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRLVDDSVRFPFLALLVSGGHTLLVLANGVGDHELLGQTV 189 (405)
T ss_pred ECCCCCEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEECCCCCEEEEECCC
T ss_conf 63899643156548999999986358864055777767888751687688345676407806999832665303550003
Q ss_pred CCCHHHHHHHHHHHCCCCC------CHHHHHHHHHHHCCC-CCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-
Q ss_conf 6300238888988528876------103556665540573-33458611106887542210245899999985112012-
Q gi|254781038|r 166 DDALGECFDKIAKSLGLPY------PGGVEIEKAALMGDG-KRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEK- 237 (363)
Q Consensus 166 Dda~Ge~~DK~ar~Lgl~y------PgGp~ie~~A~~g~~-~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~- 237 (363)
|||+||+||||||.||++. .||+.||.+|..++. ..++||.|+.+.++||||||||||++++.+++.+..++
T Consensus 190 DiApGe~lDK~ar~Lgl~~~~e~~~~~g~aie~la~~~s~~~~l~~piPL~~~~~~nFSFsglk~~~~~~i~k~~k~e~~ 269 (405)
T KOG2707 190 DIAPGEALDKCARRLGLLGHPEDARSGGKAIEHLANRASADLHLKFPIPLKNVKKCNFSFSGLKTSYRRIIEKLEKNEET 269 (405)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 66617789999998467778400222056777988546744443689886655567733788888999999973113222
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHH
Q ss_conf -1068899999999999999999999999876214455236541334587999999999998689889962878877258
Q gi|254781038|r 238 -QDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNA 316 (363)
Q Consensus 238 -~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNA 316 (363)
.+.+||||++|+++++||.+|+++|++.+. ....+++.+|++||||+|+|||.+|+.+...++.+.++|||+||||||
T Consensus 270 ~s~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~-l~~~~~~~lV~SGGVAsN~yir~~le~l~~~~n~t~i~Pp~~lCsDNg 348 (405)
T KOG2707 270 LSEIADFAASLQRTVFRHISSKTHRAIKSLL-LQPKNVKQLVISGGVASNQYIRGALEKLSAAHNCTSIKPPPSLCSDNG 348 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCC
T ss_conf 0017889999999999999999999999745-313677569971773201999999999887518741058866407751
Q ss_pred HHHHHHHHHHHHCCC-CCCCCCCCCC---CCCCCCCC
Q ss_conf 999999999998499-9887620023---57878757
Q gi|254781038|r 317 VMIAWAALERMEAGL-PADDLSISPR---SRWPLDEK 349 (363)
Q Consensus 317 aMIA~ag~~~~~~g~-~~~~~~~~~~---~rw~ld~~ 349 (363)
+||||+|+|+|+.|. ..++.|+.|. |+|++++.
T Consensus 349 iMIaw~Gie~l~~~r~~~~~~D~~~ir~~p~~~l~~~ 385 (405)
T KOG2707 349 IMIAWTGIEMLRNGRELTSIPDIEPIRARPDNGLLEV 385 (405)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCH
T ss_conf 1113678999964666787545321320677884204
No 7
>KOG2708 consensus
Probab=100.00 E-value=0 Score=489.00 Aligned_cols=331 Identities=31% Similarity=0.457 Sum_probs=302.8
Q ss_pred CEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 46887502602207788733888841898873113346212187145599999999699999999998389822453687
Q gi|254781038|r 6 KTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIA 85 (363)
Q Consensus 6 ~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Ia 85 (363)
++.||+|.|.+..+|.|++ +++||+|.+++++...++ |..|...++||...+.++++++|++++++.+|||.||
T Consensus 2 ~ialG~EGSANKlGvGiv~----~~~iLaN~R~TYitPPG~--GFlP~~TA~HHr~~il~Lv~~al~ea~v~~~diD~ic 75 (336)
T KOG2708 2 MIALGLEGSANKLGVGIVR----DGKILANPRHTYITPPGE--GFLPRDTARHHRAWILGLVKQALEEAGVTSDDIDCIC 75 (336)
T ss_pred CEEEECCCCCCCCEEEEEE----CCEEECCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEE
T ss_conf 2378214545533056876----363313744320289988--8786236788899999999999987399752287899
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEECCCCC
Q ss_conf 40664301256779999999887514864333036776530132256799843999706874799983756430002233
Q gi|254781038|r 86 VTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTI 165 (363)
Q Consensus 86 vt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~ 165 (363)
+|.|||+...|.+....|+.|++.|++|+++|||+.||++++++.+..+-| .+|+||||+||++.+.+ .+|+|.|+|+
T Consensus 76 yTKGPGmgaPL~~vaivaRtlsllw~kPlv~VNHCigHIEMGR~iTgA~nP-vvLYvSGGNTQvIAYse-~rYrIFGETl 153 (336)
T KOG2708 76 YTKGPGMGAPLSVVAIVARTLSLLWNKPLVGVNHCIGHIEMGREITGAQNP-VVLYVSGGNTQVIAYSE-KRYRIFGETL 153 (336)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEECCCCCC-EEEEEECCCEEEEEECC-CEEEEECCEE
T ss_conf 727898787626689999999998279832301211113221022168897-79999079669999715-4145403200
Q ss_pred CCCHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCC-CCCCCHHH
Q ss_conf 6300238888988528876-1-0355666554057333458611106887542210245899999985112-01210688
Q gi|254781038|r 166 DDALGECFDKIAKSLGLPY-P-GGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDV-LEKQDIAD 242 (363)
Q Consensus 166 Dda~Ge~~DK~ar~Lgl~y-P-gGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~-~~~~~~~d 242 (363)
|+|+|+|+||.||.|+|+- | .|..||++|+.|. +.+.+|+.. +++|.||||+.+.+....+...+ ..+-.+.|
T Consensus 154 DIAvGNClDRFAR~lklsN~PsPGynieq~AK~gk-~~ieLPY~V---KGMDvSfSGiLs~ie~~a~~~~~~~~~~t~~D 229 (336)
T KOG2708 154 DIAVGNCLDRFARVLKLSNDPSPGYNIEQLAKKGK-NYIELPYTV---KGMDVSFSGILSYIEDLAEELLKPSSEVTKED 229 (336)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC-CEEECCEEE---ECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 33552569999998558899899858999987325-546653355---33411028788879998765304444366888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHH
Q ss_conf 99999999999999999999999876214455236541334587999999999998689889962878877258999999
Q gi|254781038|r 243 ICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAWA 322 (363)
Q Consensus 243 iaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~a 322 (363)
+|+|+|+++|.+|++.++||+.++ +.+.++++|||.||.+|++++..||++++-+++..+-+||.||++|||.+
T Consensus 230 LCySLQEtvFamLVEiTERAMAh~------~s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~faTDeRfCIDNG~MIA~a 303 (336)
T KOG2708 230 LCYSLQETVFAMLVEITERAMAHC------GSKEVLIVGGVGCNERLQEMMAIMCSERGGKLFATDERFCIDNGVMIAQA 303 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC------CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCEEEECCHHHHHH
T ss_conf 778899999999999999998635------88717998055600999999999987508825732651365072578876
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999849998876200235787875775345
Q gi|254781038|r 323 ALERMEAGLPADDLSISPRSRWPLDEKAPSKI 354 (363)
Q Consensus 323 g~~~~~~g~~~~~~~~~~~~rw~ld~~a~~~~ 354 (363)
|+++|+.|....--+....+|++.|+.-..|.
T Consensus 304 G~l~~~~G~~~~~~es~vTQr~RTDeV~v~WR 335 (336)
T KOG2708 304 GLLMFRSGARTPLSESTVTQRYRTDEVEVTWR 335 (336)
T ss_pred HHHHHHCCCCCCCCCCEEEEEEECCCEEEEEC
T ss_conf 79998637852012130455664252688604
No 8
>pfam00814 Peptidase_M22 Glycoprotease family. The Peptidase M22 proteins are part of the HSP70-actin superfamily. The region represented here is an insert into the fold and is not found in the rest of the family (beyond the Peptidase M22 family). Included in this family are the Rhizobial NodU proteins and the HypF regulator. This region also contains the histidine dyad believed to coordinate the metal ion and hence provide catalytic activity. Interestingly the histidines are not well conserved, and there is a lack of experimental evidence to support peptidase activity as a general property of this family. There also appear to be instances of this domain outside of the HSP70-actin superfamily.
Probab=100.00 E-value=0 Score=483.21 Aligned_cols=225 Identities=47% Similarity=0.726 Sum_probs=208.3
Q ss_pred EEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 18988731133462121871455999999996999999999983898224536874066430125677999999988751
Q gi|254781038|r 31 EILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVS 110 (363)
Q Consensus 31 ~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~ 110 (363)
+|++|.+.+|.+.|.+| ||+||+|+|+|.++|+++++++|++++++++|||+||||+|||+++|||||+++||+||+++
T Consensus 1 ~il~~~~~sq~~~h~~~-GvvP~~a~r~H~~~i~~~i~~~l~~a~i~~~did~IAvt~GPGl~~~L~vG~~~Ak~La~~l 79 (225)
T pfam00814 1 EILANVILSQKDLHAPY-GVVPELASRHHSERLLPLIEEALAEAGLSLEDLDAIAVTAGPGLFTGLRVGATFAKGLALAL 79 (225)
T ss_pred CEEHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 91023577089998547-95819999999999999999999984999656899998059981886999999999999995
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 48643330367765301322567998439997068747999837564300022336300238888988528876103556
Q gi|254781038|r 111 HKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAKSLGLPYPGGVEI 190 (363)
Q Consensus 111 ~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~yPgGp~i 190 (363)
++|++||||||||++++++. .|+|+|+||||||+++.+++ .+|+++|+|+||++||+|||+||
T Consensus 80 ~~Pli~VnHleaH~~~~~~~----~~~l~llvSGght~l~~~~~-~~~~~~g~t~D~a~Ge~~Dk~ar------------ 142 (225)
T pfam00814 80 DKPLVGVNHLEAHALAARLT----EGPVVLLVSGGHTQVYAAKD-GRYEILGETLDDAAGEAFDKVAR------------ 142 (225)
T ss_pred CCCCCCCCCHHHHHHHHHCC----CCCEEEEEECCCCEEEEECC-CCEEEEEEECCCCCCHHHHHHHH------------
T ss_conf 69840246689999887605----78359998478617999759-94899986634213166589999------------
Q ss_pred HHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 66554057333458611106887542210245899999985112012106889999999999999999999999987621
Q gi|254781038|r 191 EKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAF 270 (363)
Q Consensus 191 e~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~ 270 (363)
++.+.+++. +...|+|+|||++++++|.+|+++++..+
T Consensus 143 ---------------------------------~~~~~~~~~-----~~~~dia~sfq~~v~~~l~~~~~~a~~~~---- 180 (225)
T pfam00814 143 ---------------------------------AVLRLLEKL-----KKKEDIAASFQEAVFDHLAEKTERALKHT---- 180 (225)
T ss_pred ---------------------------------HHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_conf ---------------------------------999887638-----94789999999999999999999999986----
Q ss_pred CCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHH
Q ss_conf 445523654133458799999999999868988996287887725899999
Q gi|254781038|r 271 PHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAW 321 (363)
Q Consensus 271 ~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ 321 (363)
+.++++++||||||++||+++.+.+. .+++|+++|||||||||||
T Consensus 181 --~~k~lvv~GGVaaN~~Lr~~~~~~~~----~~~~P~~~y~tDNaAMIa~ 225 (225)
T pfam00814 181 --GAKELVILGGVAANKRLREALTEMAV----ERFAPPLEYCTDNGAMIAW 225 (225)
T ss_pred --CCCEEEEECCHHHHHHHHHHHHHHCH----HHCCCCHHHCCCCHHHHCC
T ss_conf --94989998949999999999997253----5346987864305998579
No 9
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2e-19 Score=154.14 Aligned_cols=104 Identities=30% Similarity=0.472 Sum_probs=92.3
Q ss_pred CEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 46887502602207788733888841898873113346212187145599999999699999999998389822453687
Q gi|254781038|r 6 KTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIA 85 (363)
Q Consensus 6 ~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Ia 85 (363)
|.||+||||...+++||+.. .+++++.+.... ..|.|.+.|+++++++|.+++++++|+|+|+
T Consensus 1 m~iLaiDTs~~~~s~ai~~~--~~~~vl~~~~~~---------------~~r~hse~l~~~i~~ll~~~~~~~~dld~Ia 63 (220)
T COG1214 1 MKILAIDTSTSALSVALYLA--DDGKVLAEHTEK---------------LKRNHAERLMPMIDELLKEAGLSLQDLDAIA 63 (220)
T ss_pred CCEEEEECCCHHHHHHHEEC--CCCCEEEEEEEE---------------CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEE
T ss_conf 91899986734531661424--789588999971---------------5832889999999999987599977848899
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC
Q ss_conf 40664301256779999999887514864333036776530
Q gi|254781038|r 86 VTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILT 126 (363)
Q Consensus 86 vt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~ 126 (363)
|++|||+|||+|||+++||+||+++++|+++|+-+++-+..
T Consensus 64 v~~GPGSFTGlRIG~~~AkgLA~~l~iplvgvssL~~~A~~ 104 (220)
T COG1214 64 VAKGPGSFTGLRIGVAFAKGLALALNIPLVGVSSLEALAQG 104 (220)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHH
T ss_conf 93089742238899999999987529868995769999863
No 10
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=9.5e-13 Score=108.06 Aligned_cols=289 Identities=22% Similarity=0.259 Sum_probs=178.0
Q ss_pred CEEEEEECCCHHHEEEEEECCCCCCEEEE---EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 46887502602207788733888841898---873113346212187145599999999699999999998389822453
Q gi|254781038|r 6 KTVIGIETSCDETAVAVVRRKDSHGEILA---EAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMD 82 (363)
Q Consensus 6 ~~ILgIETScd~tsvaiv~~~~~~~~il~---~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id 82 (363)
|+||||--.-+|.++|+++ |++|++ +++.+..+.+. ..| ...++-+|+++++.+.|+|
T Consensus 1 m~ILGis~~~HD~aaaLv~----Dg~iVaAv~EERftR~K~~~----~fP-----------~~sv~~~L~~~~~~~~dVD 61 (555)
T COG2192 1 MYILGISDGYHDAAAALVR----DGEIVAAVEEERFTRKKHDA----GFP-----------EQSVDYCLRLAGIELTDVD 61 (555)
T ss_pred CEEEEECCCCCCCCEEEEE----CCEEEEEEHHHHHCHHCCCC----CCC-----------HHHHHHHHHHCCCCCCCCC
T ss_conf 9799843677775017885----78289870133422110024----794-----------6778998740368855466
Q ss_pred EEEECCCCC----------------HHHHHHHHHHHHHHHH-------HHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEE
Q ss_conf 687406643----------------0125677999999988-------75148643330367765301322567998439
Q gi|254781038|r 83 SIAVTAGPG----------------LMGGLIVGLMTAKAIS-------YVSHKPFYAINHLEGHILTARLTDDIAFPYLV 139 (363)
Q Consensus 83 ~Iavt~gPG----------------~~~~L~vG~~~Ak~la-------~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~ 139 (363)
+|++---|+ ++.-+..+....+-++ ..+.+++.-+.|-++|+.+++..++.+. .++
T Consensus 62 ~va~~~~~~~~~~r~~~~yl~~~~~~~~~~~~k~~l~~~~~~l~~~~~~~~~~kv~~~eHH~aHAasAf~~SpF~~-a~v 140 (555)
T COG2192 62 AVAVAGKPSAKFRRILAGYLKRKPELFGKLLLKKLLKRLLAELDQFFGKGLPVKVLFVEHHLAHAASAFFTSPFEE-ALV 140 (555)
T ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHCCCCCCC-CEE
T ss_conf 8997577077777889887642200000115678999999876411224676221000488887898723887201-149
Q ss_pred EEEECC----CEEEEEECCCCCCEECC-CCCCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHCCCCCCCCC-CHHCC--
Q ss_conf 997068----74799983756430002-233630023888898852887-6103556665540573334586-11106--
Q gi|254781038|r 140 LLVSGG----HTQILLVRDVAHYDRLG-TTIDDALGECFDKIAKSLGLP-YPGGVEIEKAALMGDGKRFKFP-CPLVQ-- 210 (363)
Q Consensus 140 LlvSGG----hT~l~~~~~~~~~~ilg-~T~Dda~Ge~~DK~ar~Lgl~-yPgGp~ie~~A~~g~~~~~~~P-~p~~~-- 210 (363)
|.+-|. +|++-+.++ .+..++- .+-.|+.|-.+..+...||+. -++--.+.-+|--|++. |.+. .....
T Consensus 141 l~iDg~Gd~~s~~~~~~~~-~~~~~i~~~~~~~SLG~fY~~~T~~lGf~~n~~EgKvMgLAaYG~p~-y~~~~~d~l~~~ 218 (555)
T COG2192 141 LTIDGAGDGLSTSVWHGRN-GQLTPIAQSRGIDSLGLFYAAFTELLGFKPNSDEGKVMGLAAYGDPN-YDLSLLDLLREK 218 (555)
T ss_pred EEEECCCCCEEEEEEECCC-CEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCC-CCHHHHHHHHHC
T ss_conf 9996467854788886058-80689875058642889999999982878778885478760368865-236789998631
Q ss_pred -------------CCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf -------------8875422102458999999851120121068899999999999999999999999876214455236
Q gi|254781038|r 211 -------------GTLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVL 277 (363)
Q Consensus 211 -------------~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~l 277 (363)
...--+.|| +.-...|.. ......+...|+|+|.|...-+.+.+-..-.-+. .+...|
T Consensus 219 ~~~~~~i~~~~~~~~~~l~~~~-~~~~~~r~~--~~~~~~~~~~diAasaQ~~lE~l~l~~~~~~~~~------~g~~~L 289 (555)
T COG2192 219 EDGLFVINGELLKRLARLGTFS-LLGALKRRL--PESPSTERAADIAASAQAYLEELVLEMLRYLREE------TGEDNL 289 (555)
T ss_pred CCCCEECCHHHHHHCCCCCEEC-CCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HCCCCE
T ss_conf 3420220589997424432000-022343225--4464323178899999999999999999999987------186644
Q ss_pred EEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHHHHH
Q ss_conf 54133458799999999999868988996287887725899999999999
Q gi|254781038|r 278 VVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAWAALERM 327 (363)
Q Consensus 278 vv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ag~~~~ 327 (363)
+++||||.|-..-.++.. +.....++.+|.-==.-||+.-|.++...+
T Consensus 290 ~~AGGVAlNv~~N~~~l~--~~~f~dlfV~Pa~gD~G~AvGAAl~~~~~~ 337 (555)
T COG2192 290 ALAGGVALNVKANGKLLR--RGLFEDLFVQPAMGDAGLAVGAALAVKREL 337 (555)
T ss_pred EECCCEEEEEEEHHHHHH--CCCCCEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 871521354311276760--566761576578898401899999999985
No 11
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=7.3e-11 Score=95.05 Aligned_cols=228 Identities=18% Similarity=0.303 Sum_probs=152.6
Q ss_pred HHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCC--CCEEEEEEC
Q ss_conf 999999838982245368740664301256779999999887514864333036776530132256799--843999706
Q gi|254781038|r 67 IKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAF--PYLVLLVSG 144 (363)
Q Consensus 67 i~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~--PfL~LlvSG 144 (363)
++..++--+++. |+|++---|.+.+. .+|+. ++.|++-|-|-.||+++...+..++. |++++-.-|
T Consensus 440 ~~~~~~~~~~~p---d~i~cDlHP~y~tt-----~~A~e----~~~~~~~VqHH~AH~~a~mae~~~~~~~~vi~ia~DG 507 (750)
T COG0068 440 LRHFLKIYDFEP---DYIVCDLHPNYNTT-----KYAEE----FALPLLQVQHHHAHALAVMAEHGLPLDEKVIGIALDG 507 (750)
T ss_pred HHHHHHHHCCCC---CEEEEECCCCCCHH-----HHHHH----HCCCCEEEEHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf 999998716897---64887257652114-----67776----1564013105678889886056788777569999658
Q ss_pred -----------CCEEEEEECCCC-------------------------------------CC----------------E-
Q ss_conf -----------874799983756-------------------------------------43----------------0-
Q gi|254781038|r 145 -----------GHTQILLVRDVA-------------------------------------HY----------------D- 159 (363)
Q Consensus 145 -----------GhT~l~~~~~~~-------------------------------------~~----------------~- 159 (363)
|-..+.-.+.+. +| +
T Consensus 508 ~GyG~dGk~WGGE~l~~d~~~~erlahl~~~~L~GGd~Aik~P~R~~ls~l~~~~~~~~k~~~~~~~e~~~~~l~~~~e~ 587 (750)
T COG0068 508 VGYGEDGKVWGGEFLVIDYKEYERLAHLEYVDLPGGDLAIKYPLRMALSILLRFFLKLIKNYNEKYGELELKVLAQALEK 587 (750)
T ss_pred CCCCCCCCEECCEEEEECCHHHHHHCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 53255676315158963127664303676210689852343458899999987316889851634333457889999871
Q ss_pred ECCCCCCCCHHHHHHHHHHHCCC----CCCH--HHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 00223363002388889885288----7610--35566655405733345861110688754221024589999998511
Q gi|254781038|r 160 RLGTTIDDALGECFDKIAKSLGL----PYPG--GVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFD 233 (363)
Q Consensus 160 ilg~T~Dda~Ge~~DK~ar~Lgl----~yPg--Gp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~ 233 (363)
-+-..+-.+.|..||-+|-+||+ .|.| +..+|.+|...+...|++..+..++.-.| ++.-.+..++..
T Consensus 588 gin~p~tSS~GRlfDAvaalLgi~~~~tYEGE~A~~LEa~a~~~~~~~~~~~~~~~~~~vld-----~~~~~~~~l~~~- 661 (750)
T COG0068 588 GINAPLTSSIGRVFDAVAALLGICETRTYEGEAAMALEALADQSDGVDYPYEIKNEDNQVLD-----LKELILGVLEDL- 661 (750)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHCCCCCCCCEECCCCCCEEE-----HHHHHHHHHHHH-
T ss_conf 46873101422889999998744110444240466579766210367666201157761766-----999999999986-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCC
Q ss_conf 20121068899999999999999999999999876214455236541334587999999999998689889962878877
Q gi|254781038|r 234 VLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCT 313 (363)
Q Consensus 234 ~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ct 313 (363)
...++.++|..|++++++.+.+.....-. ..++++++++|||..|++|.+.+.+.+++.|+++++|..-.|.
T Consensus 662 --~~~~~~~iA~~fh~~la~~~~e~~~~~a~------~~gi~~V~lsGGVf~N~~l~~~~~~~lk~~~f~~~~~~~~P~~ 733 (750)
T COG0068 662 --LKDEPEKIATKFHNALAEGFAELAVELAK------KYGINKVVLSGGVFQNRLLLERLAKYLKKEGFRFLFHQEVPAG 733 (750)
T ss_pred --HCCCHHHHHHHHHHHHHHHHHHHHHHHHH------HCCCCEEEEECCEEECHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf --03778899999999999999999999998------6594279972776414999999999997539267650466999
Q ss_pred CHHHHHH
Q ss_conf 2589999
Q gi|254781038|r 314 DNAVMIA 320 (363)
Q Consensus 314 DNAaMIA 320 (363)
|++.-.+
T Consensus 734 DggIslG 740 (750)
T COG0068 734 DGGISLG 740 (750)
T ss_pred CCCEEHH
T ss_conf 9844488
No 12
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF; InterPro: IPR004421 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesized as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins , , . Members of the HypF family are accessory proteins involved in hydrogenase maturation. They contain the following domains: acylphosphatase, zinc fingers (2 repeats), a YrdC-like domain, and a C-terminal domain with a putative O-carbamoyltransferase motif. The presence of CO and CN- ligands of the active site iron atoms is essential for [NiFe]-hydrogenase enzyme activity . Both ligands have been suggested to originate from carbamoylphosphate , which is required for maturation of [NiFe]-hydrogenases . Escherichia coli HypF interacts with carbamoylphosphate as a substrate and releases inorganic phosphate . In addition, HypF also cleaves ATP into AMP and pyrophosphate in the presence of carbamoylphosphate. This, and the fact that HypF catalyzes a carbamoylphosphate-dependent pyrophosphate ATP exchange reaction, suggest that the protein catalyzes the activation of carbamoylphosphate . The mechanism of action of HypF, as well as of its individual domains, is not yet clear. Mutations in any of the three major signature motifs, the acylphosphatase, the zinc fingers, and the O-carbamoyltransferase motif, can block carbamoylphosphate phosphatase activity. This indicates an integrated cooperativity between these domains in the cleavage reaction . The N-terminal acylphosphatase (ACP) domain is thought to support the conversion of carbamoylphosphate into CO and CN- , . Biochemical results demonstrating its ACP activity are not available , . ACPs are small enzymes that specifically catalyze the hydrolysis of carboxylphosphate bonds in acylphosphates, including carbamoylphosphate . Zinc fingers have been implicated in bivalent cation binding or as part of a chaperone domain interacting with the large subunit precursor, but experimental studies on such a function are lacking thus far. The YrdC-like domain is present in protein families with regulatory functions (IPR012200 from INTERPRO, IPR010923 from INTERPRO) and has been implicated in RNA binding . It is not clear what function it may have in members of the HypF family. A C-terminal domain is distantly related to peptidase M22, but contains a conserved O-carbamoyltransferase motif required for the carbamoylphosphate phosphatase activity . The function of this domain is not clear. Nomenclature note: the following names are used as synonyms of HypF: HupY in Azotobacter chroococcum, HupN in Rhizobium leguminosarum, HydA in Escherichia coli. In other organisms, these names are used to designate various "hydrogenase cluster" proteins unrelated to the members of this family. ; GO: 0030528 transcription regulator activity.
Probab=99.31 E-value=5.3e-09 Score=82.22 Aligned_cols=229 Identities=19% Similarity=0.266 Sum_probs=165.9
Q ss_pred CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC-----CCCCCEEEEEE-------
Q ss_conf 982245368740664301256779999999887514864333036776530132256-----79984399970-------
Q gi|254781038|r 76 MQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDD-----IAFPYLVLLVS------- 143 (363)
Q Consensus 76 ~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~-----~~~PfL~LlvS------- 143 (363)
.+++++|.|+.-.=|.+.| ..+|.-|+..++.|++-|=|-.||++|...... ++-+++++-+=
T Consensus 455 ~d~~~~~~iv~D~HP~y~s-----t~~Ae~l~~~fs~~~~~VQHHhAHalA~~ae~~~~~Ph~~~~v~gi~~DG~GyG~d 529 (799)
T TIGR00143 455 YDFEPIDVIVCDLHPQYNS-----TQYAEELAKKFSLPVLRVQHHHAHALAVMAEAGLQDPHLEEAVIGIALDGVGYGED 529 (799)
T ss_pred HCCCCEEEEEECCCCCCCC-----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEECCC
T ss_conf 1898504888648888310-----78999999871875010014789999999861788888888668998325414688
Q ss_pred ----CCCEEEEEE--CCCCCC-----------------------------------------------------------
Q ss_conf ----687479998--375643-----------------------------------------------------------
Q gi|254781038|r 144 ----GGHTQILLV--RDVAHY----------------------------------------------------------- 158 (363)
Q Consensus 144 ----GGhT~l~~~--~~~~~~----------------------------------------------------------- 158 (363)
||-...+.. .++-+.
T Consensus 530 G~iWGGE~L~~~~ek~~~Er~g~L~~~~LlGGd~A~k~P~R~~L~~l~~~~~~~~~~~~~~~y~~y~~~~sv~e~~~~~l 609 (799)
T TIGR00143 530 GKIWGGEVLLIDLEKGRIERLGRLEEFALLGGDLATKYPLRILLSLLLPKFEGDLSADFLKRYQKYSETFSVKEKELSVL 609 (799)
T ss_pred CCEECEEEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 85522088987646200001047450025775277742799999985144014788887777621047620257689999
Q ss_pred -------------EECCCCCCCCHHHHHHHHHHHCCCC-----CCH--HHHHHHHHHH------------CCCCCCCCCC
Q ss_conf -------------0002233630023888898852887-----610--3556665540------------5733345861
Q gi|254781038|r 159 -------------DRLGTTIDDALGECFDKIAKSLGLP-----YPG--GVEIEKAALM------------GDGKRFKFPC 206 (363)
Q Consensus 159 -------------~ilg~T~Dda~Ge~~DK~ar~Lgl~-----yPg--Gp~ie~~A~~------------g~~~~~~~P~ 206 (363)
+.+-.-+=-+.|..||=||-+||+- |.| +..+|..|.. .+...+..|.
T Consensus 610 ~~~~~~knlrqlWqr~n~p~t~S~GR~lDavaa~L~~~P~~~tyEGE~a~~LEa~A~phevevkPeierrR~~~~~~~P~ 689 (799)
T TIGR00143 610 KQALEKKNLRQLWQRINAPLTTSTGRLLDAVAALLGLCPGERTYEGEAAIKLEALALPHEVEVKPEIERRRSKGEVNYPF 689 (799)
T ss_pred HHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHCCCCEECCCCCCCHHCCCCEECCC
T ss_conf 99852360678987631321112337999999985011551100432457878851886231156400000136211561
Q ss_pred HHCCCCC-CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHH
Q ss_conf 1106887-542210245899999985112012106889999999999999999999999987621445523654133458
Q gi|254781038|r 207 PLVQGTL-CDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVAS 285 (363)
Q Consensus 207 p~~~~~~-~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaa 285 (363)
-+.+..+ +-.. +++-..+.++.. ...+++..||..+++.+.+=|++-...+... .++++|+++|||..
T Consensus 690 ~~~~~~g~~~l~---~~~~~~~~~~~~--~~~E~r~kiA~~A~~~~a~GL~ei~~~~a~~------~Gi~~i~~sGGV~~ 758 (799)
T TIGR00143 690 EIKNKDGIKVLD---LKEFLQRVLEKL--LEGEDRSKIAHIAHKFVASGLVEIALEIAQK------FGIEKIVISGGVFY 758 (799)
T ss_pred EECCCCCEEEEE---HHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCEEEEECCCHHH
T ss_conf 214788705540---579999999997--3468777899999999987799999999974------79469993384388
Q ss_pred HHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHH
Q ss_conf 79999999999986898899628788772589999
Q gi|254781038|r 286 NHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIA 320 (363)
Q Consensus 286 N~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA 320 (363)
|++|++.+.+.+++.|++++||..-=-.||+.=+|
T Consensus 759 N~~l~~~~~~~~~~~gf~~~~p~~~P~gDggislG 793 (799)
T TIGR00143 759 NRLLLERVAKYLKKAGFEFLFPRELPAGDGGISLG 793 (799)
T ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCHH
T ss_conf 89999999999985797144165577988750178
No 13
>PRK13317 pantothenate kinase; Provisional
Probab=99.01 E-value=3.2e-07 Score=69.89 Aligned_cols=247 Identities=19% Similarity=0.189 Sum_probs=157.7
Q ss_pred CCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 88468875026022077887338888418988731133462121871455999999996999999999983898224536
Q gi|254781038|r 4 IKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDS 83 (363)
Q Consensus 4 ~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~ 83 (363)
|.| .+|||-=--.|=+++++ .++++......+. ++..+++.. .+.+++.-
T Consensus 1 m~m-~iGID~G~T~tKiv~~~---~~~~l~f~~~~s~---------------------~i~~~~~~~-----~~~~~i~~ 50 (273)
T PRK13317 1 MEM-KIGIDAGGTLTKIVYLE---EKNQRTFKTVLST---------------------DIKKVIDWL-----KNQNDIEK 50 (273)
T ss_pred CCC-EEEEEECCCEEEEEEEC---CCCCEEEEECCCC---------------------CHHHHHHHH-----HHCCCCCE
T ss_conf 985-69999877707899988---9997988731347---------------------789999997-----62445228
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-C---CCCCCCEEEEEECCC-EEEEEECCCCCC
Q ss_conf 87406643012567799999998875148643330367765301322-5---679984399970687-479998375643
Q gi|254781038|r 84 IAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLT-D---DIAFPYLVLLVSGGH-TQILLVRDVAHY 158 (363)
Q Consensus 84 Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~-~---~~~~PfL~LlvSGGh-T~l~~~~~~~~~ 158 (363)
|++|-|.++ .+++.+ ..++|+.-|+-+++....+.+. . ...+|| ++||+|. |-++.+++ .++
T Consensus 51 i~vTGggs~--------~l~~~~--~~~~~i~k~~E~~A~~~G~~~l~~~~~~~~~~~--llvniGsGtsi~~v~~-~~~ 117 (273)
T PRK13317 51 ICLTGGKAG--------QLAQLL--NIGYKIVEFVEFEATLQGVRYLLKEEGHDLNDY--ILTNIGTGTSIHYVDG-KQQ 117 (273)
T ss_pred EEEECCCHH--------HHHHHH--HCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCE--EEEECCCCEEEEEECC-CEE
T ss_conf 999777178--------788997--258997465459899999999840037874547--9997168717999758-726
Q ss_pred EECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHC--------CCCCCCCCCCHHHHHHHHHHH
Q ss_conf 000223363002388889885288761035566655405733345861110--------688754221024589999998
Q gi|254781038|r 159 DRLGTTIDDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLV--------QGTLCDFSFSGLKTSVQKTIC 230 (363)
Q Consensus 159 ~ilg~T~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~--------~~~~~dFSFSGLkTav~~~i~ 230 (363)
+.+|.|-=- |=.|.-.+++| ++---=-++.++|+.|+.+..++-..-+ ...-..=||- |+.
T Consensus 118 ~rvgGt~iG--GGt~~GL~~lL-~~~~~~~el~~la~~G~~~~vDl~v~dIy~~~~~~l~~~~~As~Fg--K~~------ 186 (273)
T PRK13317 118 RRVGGTGIG--GGTIQGLGKLL-TNITDYEQLIDLAKHGSRNTIDLKVRDIYKGPLPPIDGDLTASNFG--KVL------ 186 (273)
T ss_pred EEECCCCCC--HHHHHHHHHHH-CCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECC--CCC------
T ss_conf 884574654--18899999983-0899999999998657840266787788537788999872677023--641------
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHH-HHHHHHHHHHHHHHHHHCCCEEEECCH
Q ss_conf 5112012106889999999999999999999999987621445523654133-458799999999999868988996287
Q gi|254781038|r 231 AFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGG-VASNHFIRASLIDLCVLHGFRFVAPPA 309 (363)
Q Consensus 231 ~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GG-VaaN~~LR~~l~~~~~~~~~~~~~P~~ 309 (363)
...++..++|+|+|.+..|.+.+....-.. +..++++.+++.|| +.-|..+|+.+.+..+-.+.+.+||+.
T Consensus 187 --~~~~~~~~eDiaasl~~mV~~~Ig~lA~l~------A~~~~i~~i~f~G~~l~~~~~~~~~~~~~~~~~~~~~~f~~~ 258 (273)
T PRK13317 187 --HHDSNFTSSDILAAVIGLVGEVITTLSIQA------AEEKNTENIVYIGSTLCNNALLQEVIEDYTVLRGCTPIFLEN 258 (273)
T ss_pred --CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH------HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf --135699989999999999999999999999------987498769998986668878999999999866964886163
Q ss_pred H-HC
Q ss_conf 8-87
Q gi|254781038|r 310 R-LC 312 (363)
Q Consensus 310 ~-~c 312 (363)
+ |.
T Consensus 259 ~~y~ 262 (273)
T PRK13317 259 GGFS 262 (273)
T ss_pred HHHH
T ss_conf 7686
No 14
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.88 E-value=4.6e-06 Score=61.95 Aligned_cols=261 Identities=15% Similarity=0.217 Sum_probs=153.6
Q ss_pred CCCCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 88884688750260220778873388884189887311334621218714559999999969999999999838982245
Q gi|254781038|r 2 SKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDM 81 (363)
Q Consensus 2 ~~~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~i 81 (363)
+...|+.+|||.=.-+|=+.|++ +++|++-..... |--|..+++ ..++++|++.+++..++
T Consensus 28 ~~~~mit~GIDiGSTttK~Vll~----d~~ii~~~~~~t--------g~~~~~aa~-------~~l~~~l~~~g~~~~~i 88 (293)
T TIGR03192 28 KDAKIITCGIDVGSVSSQAVLVC----DGELYGYNSMRT--------GNNSPDSAK-------NALQGIMDKIGMKLEDI 88 (293)
T ss_pred CCCCEEEEEEECCCHHEEEEEEE----CCCEEEEEEEEC--------CCCHHHHHH-------HHHHHHHHHCCCCHHHC
T ss_conf 76657999787180266899994----892999998606--------998289999-------99999999859986676
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCE--
Q ss_conf 368740664301256779999999887514864333036776530132256799843999706874799983756430--
Q gi|254781038|r 82 DSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYD-- 159 (363)
Q Consensus 82 d~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~-- 159 (363)
+.|. +.|=|- +.+.+| .. .|+-.-+|...+.+..++.- --.+=+-|=.+-.+.+++.+...
T Consensus 89 ~~iv-~TGYGR-----~~i~~a------~~----~itEIt~Ha~GA~~l~~~~v-rTIiDIGGQDsK~I~ld~~G~V~dF 151 (293)
T TIGR03192 89 NYVV-GTGYGR-----VNVPFA------HK----AITEIACHARGANYMGGNAV-RTILDMGGQDCKAIHCDEKGKVTNF 151 (293)
T ss_pred EEEE-ECCCCH-----HHCCCC------CC----CEEEEHHHHHHHHHHCCCCC-CEEEEECCCCEEEEEECCCCCEEEE
T ss_conf 3898-438642-----212211------35----56770678999997478977-4899936860489998589958778
Q ss_pred ECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 00223363002388889885288761035566655405733345861110688754221024589999998511201210
Q gi|254781038|r 160 RLGTTIDDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQD 239 (363)
Q Consensus 160 ilg~T~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~ 239 (363)
.+.+-.--.-|..++-.|+.||+|.. ++..+|.....+ |.++. ..|- =| .+|-+..++.+ ...
T Consensus 152 ~MNdkCAAGTGrFLE~~A~~L~i~l~---el~~~a~~~~~~----p~~is--S~Ct-VF--aESevis~l~~-----G~~ 214 (293)
T TIGR03192 152 LMNDKCAAGTGRGMEVISDLMQIPIA---DLGPRSFDVETE----PEAVS--SICV-VF--AKSEALGLLKA-----GYT 214 (293)
T ss_pred EECCCCCCCCCHHHHHHHHHCCCCHH---HHHHHHHHCCCC----CCCCC--CEEE-EE--EEHHHHHHHHC-----CCC
T ss_conf 72561134555399999998099999---999998754589----86637--7157-88--61769999986-----998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECC--HHHCCCHHH
Q ss_conf 688999999999999999999999998762144552365413345879999999999986898899628--788772589
Q gi|254781038|r 240 IADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPP--ARLCTDNAV 317 (363)
Q Consensus 240 ~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~--~~~ctDNAa 317 (363)
+.||+++.-+++.+-+...+++. . -.+.+++.||||-|..+.+.|++.+.. +.+.|| |.|. -|.
T Consensus 215 ~edI~aGl~~sia~rv~~l~~r~--------~-~~~~iv~tGGva~N~~vv~ale~~Lg~---~~i~~~~~~q~~--GAl 280 (293)
T TIGR03192 215 KNMVIAAYCQAMAERVVSLLERI--------G-VEEGFFITGGIAKNPGVVKRIERILGI---KAVDTKIDSQIA--GAL 280 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC--------C-CCCCEEEECCCCCCHHHHHHHHHHHCC---CEEECCCCCCHH--HHH
T ss_conf 99999999999999999997633--------8-899889989760548999999998699---657379983276--699
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999999984
Q gi|254781038|r 318 MIAWAALERMEA 329 (363)
Q Consensus 318 MIA~ag~~~~~~ 329 (363)
.-|..|++.+++
T Consensus 281 GAAL~a~~~~~K 292 (293)
T TIGR03192 281 GAALFGYTLMQK 292 (293)
T ss_pred HHHHHHHHHHHC
T ss_conf 999998998716
No 15
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.82 E-value=1.3e-06 Score=65.79 Aligned_cols=243 Identities=20% Similarity=0.299 Sum_probs=150.7
Q ss_pred CCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 84688750260220778873388884189887311334621218714559999999969999999999838982245368
Q gi|254781038|r 5 KKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSI 84 (363)
Q Consensus 5 ~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~I 84 (363)
.-+-||||+-.-+|-+-++++ .+|++. |-+|. ..-.+.-...++++|++++++.+||++|
T Consensus 143 ~g~t~gidsgstttk~v~m~d----neiig~-------------gw~~t---~~v~~sa~~~~~~al~~ag~~~~di~ai 202 (404)
T TIGR03286 143 EGLTLGIDSGSTTTKAVVMED----NEVIGT-------------GWVPT---TKVIESAEEAVERALEEAGVSLEDVEAI 202 (404)
T ss_pred HCEEEEECCCCCEEEEEEEEC----CEEEEC-------------CCCCC---HHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 184465427985145899725----704405-------------76555---4678889999999999739757765321
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCC--CCCEECC
Q ss_conf 74066430125677999999988751486433303677653013225679984399970687479998375--6430002
Q gi|254781038|r 85 AVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDV--AHYDRLG 162 (363)
Q Consensus 85 avt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~--~~~~ilg 162 (363)
.+| |-|- +. +.|.+-.-+...=+.||---|+.++. .-+=|.-.+=+-|=.+-++.+++- .+|. +.
T Consensus 203 gtT-GyGr---~~----ig~~~~adl~~eE~tv~skgA~yla~----~~~g~aTVIDIGGQDsKvI~l~dGiv~dF~-MN 269 (404)
T TIGR03286 203 GTT-GYGR---FT----IGEHFGADLIQEELTVNSKGAVYLAD----KQEGPATVIDIGGMDNKAISVWDGIPDNFT-MG 269 (404)
T ss_pred CCC-CCCH---HH----HHHHCCCCCEEEEEEEECCCCEECCC----CCCCCCEEEEECCCCCEEEEECCCCEEECC-CC
T ss_conf 466-6215---46----65643752004778885041011055----567896699976863169997179454031-17
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 23363002388889885288761035566655405733345861110688754-22102458999999851120121068
Q gi|254781038|r 163 TTIDDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCD-FSFSGLKTSVQKTICAFDVLEKQDIA 241 (363)
Q Consensus 163 ~T~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~d-FSFSGLkTav~~~i~~~~~~~~~~~~ 241 (363)
+-.--.-|..+|-.|+.||++-. ++..+|.++.++.. ++ + ..|- |-=| .+...+.+ ...+.
T Consensus 270 dkCAAGTGRFLE~mA~rLgI~Ie---Elg~LAlks~~~pV----~I-s-S~CTVFAES----EvIslla~-----G~~~E 331 (404)
T TIGR03286 270 GICAGASGRFLEMTAKRLGVDIT---ELGKLALKGMPEKV----RM-N-SYCIVFGIQ----DLVTALAE-----GASPE 331 (404)
T ss_pred CCCCCCCCHHHHHHHHHCCCCHH---HHHHHHHHCCCCCC----CC-C-CEEEEEEEH----HHHHHHHC-----CCCHH
T ss_conf 96666476599999987299899---99999982799877----53-5-764898518----99999977-----99989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCH
Q ss_conf 89999999999999999999999987621445523654133458799999999999868988996287
Q gi|254781038|r 242 DICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPA 309 (363)
Q Consensus 242 diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~ 309 (363)
||++..-+++++-...++.+- ..-...+++.||||.|..+++.|++.+ +.+++.||-
T Consensus 332 DIaAGlc~SVA~rvl~~l~k~--------v~i~~~VvftGGVA~N~GIv~ALEe~L---G~~IiVPp~ 388 (404)
T TIGR03286 332 DVAAAACHSVAEQVYEQQLQE--------IDVREPVILVGGTSLIEGLVKALGDLL---GIEVVVPEY 388 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHCC--------CCCCCCEEEECCCCCCHHHHHHHHHHH---CCCEECCCC
T ss_conf 999999999999999998443--------688999799896205489999999985---993771897
No 16
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.78 E-value=9.1e-06 Score=59.88 Aligned_cols=239 Identities=21% Similarity=0.285 Sum_probs=153.6
Q ss_pred CCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 88468875026022077887338888418988731133462121871455999999996999999999983898224536
Q gi|254781038|r 4 IKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDS 83 (363)
Q Consensus 4 ~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~ 83 (363)
..+..||||.-.-+|-+.++++ +..|+.....+.. ..|. + ...+++++++.+.+..+|+.
T Consensus 133 ~~~~~LGID~GSTtTK~VLm~d---~~~I~~~~~~~t~--------g~p~-~--------~~~l~~~le~l~~~~~~I~~ 192 (396)
T COG1924 133 QGMYTLGIDSGSTTTKAVLMED---GKEILYGFYVSTK--------GRPI-A--------EKALKEALEELGEKLEEILG 192 (396)
T ss_pred CCCEEEEEECCCCCEEEEEEEC---CCEEEEEEEECCC--------CCHH-H--------HHHHHHHHHHCCCCHHEEEE
T ss_conf 2867997623874135999837---9757888997578--------8766-8--------99999999980647121222
Q ss_pred EEECCCCCHHHHHHHHHHHHHHH-HHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECC-CCCCEEC
Q ss_conf 87406643012567799999998-875148643330367765301322567998439997068747999837-5643000
Q gi|254781038|r 84 IAVTAGPGLMGGLIVGLMTAKAI-SYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRD-VAHYDRL 161 (363)
Q Consensus 84 Iavt~gPG~~~~L~vG~~~Ak~l-a~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~-~~~~~il 161 (363)
+.+| || .+.+ ...++.. .+++-.-+|...+....+-.. -.+=+-|=.+-.+.+++ .-+--.+
T Consensus 193 ~~~T---GY----------GR~~v~~~~~aD-~~~~Ei~ah~kgA~~f~p~~d--tIiDIGGQD~K~i~i~dG~v~df~m 256 (396)
T COG1924 193 LGVT---GY----------GRNLVGAALGAD-KVVVEISAHAKGARYFAPDVD--TVIDIGGQDSKVIKLEDGKVDDFTM 256 (396)
T ss_pred EEEE---CC----------CHHHHHHHHCCC-CCEEEEEHHHHHHHHHCCCCC--EEEEECCCCEEEEEEECCEEEEEEE
T ss_conf 4322---12----------087763330577-432543036778987288986--7998568503689971881422576
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 223363002388889885288761035566655405733345861110688754-2210245899999985112012106
Q gi|254781038|r 162 GTTIDDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCD-FSFSGLKTSVQKTICAFDVLEKQDI 240 (363)
Q Consensus 162 g~T~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~d-FSFSGLkTav~~~i~~~~~~~~~~~ 240 (363)
++-.--+-|..++..|+.||++.. ++.++|..+... +..++. |- |.=|-++++.. +..+.
T Consensus 257 N~~CAAGtGrFLE~~A~~Lgv~v~---E~~~~A~~~~~~------v~i~S~-CaVF~eSevi~~~~---------~G~~~ 317 (396)
T COG1924 257 NDKCAAGTGRFLEVIARRLGVDVE---ELGKLALKATPP------VKINSR-CAVFAESEVISALA---------EGASP 317 (396)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCHH---HHHHHHHCCCCC------CCCCCE-EEEEEHHHHHHHHH---------CCCCH
T ss_conf 461024665389999998299789---999898558887------453772-07874178899998---------69988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE-EEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCH
Q ss_conf 889999999999999999999999987621445523-654133458799999999999868988996287
Q gi|254781038|r 241 ADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAV-LVVSGGVASNHFIRASLIDLCVLHGFRFVAPPA 309 (363)
Q Consensus 241 ~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~-lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~ 309 (363)
.||+|..-+++.+-...+..+.. .++. +++.|||+-|.-+-+.|++.. +.+++.||-
T Consensus 318 EdI~AGl~~Sv~~~v~~~~~~~~---------~i~~~iv~~GGva~n~av~~ale~~l---g~~V~vP~~ 375 (396)
T COG1924 318 EDILAGLAYSVAENVAEKVIKRV---------DIEEPIVLQGGVALNKAVVRALEDLL---GRKVIVPPY 375 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC---------CCCCCEEEECCCHHHHHHHHHHHHHH---CCEEECCCC
T ss_conf 99999999999999999985116---------88888799884025799999999985---881534895
No 17
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=98.75 E-value=1.2e-05 Score=58.98 Aligned_cols=300 Identities=23% Similarity=0.259 Sum_probs=173.7
Q ss_pred CCCEEEEE--ECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCC-------CCCCCCHHH---HHHHHHHHHHHHHHHH
Q ss_conf 88468875--02602207788733888841898873113346212-------187145599---9999996999999999
Q gi|254781038|r 4 IKKTVIGI--ETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGH-------YGGVVPEVA---ARAHVDVLDILIKQTL 71 (363)
Q Consensus 4 ~~~~ILgI--ETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~-------~GGv~P~~A---~~~H~~~l~~li~~~l 71 (363)
+.|.++|+ =||+|---+|+++.+...-+++......+.+.-.+ -+..-++.. .+.-.+.....|++.+
T Consensus 2 ~~~~~iGlMSGTSlDGiD~alv~~~g~~~~~i~~~~~~y~~~lr~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~i 81 (366)
T PRK09585 2 KSMRYIGLMSGTSLDGVDAALVEIDGERVELLASATVPYPDALRAELLALCQGGPLELARLAELDRALGRLFAEAVNALL 81 (366)
T ss_pred CCEEEEEEECCCCHHHHEEEEEEECCCEEEEEEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 73389999657773767289999739848998505564899999999998535899999999999999999999999999
Q ss_pred HHCCCCCCCCCEEEECC-----CCCHHHHHHHHHHHHHHHHHHHCCCCCC---CHHHH----HHHHCCCC----CCCCCC
Q ss_conf 98389822453687406-----6430125677999999988751486433---30367----76530132----256799
Q gi|254781038|r 72 LRANMQISDMDSIAVTA-----GPGLMGGLIVGLMTAKAISYVSHKPFYA---INHLE----GHILTARL----TDDIAF 135 (363)
Q Consensus 72 ~~a~~~~~~id~Iavt~-----gPG~~~~L~vG~~~Ak~la~~~~~Pli~---VnH~~----aH~~~~~l----~~~~~~ 135 (363)
++++++.++||+|+.-= .|-....+.+|- +..||...++|+|. .++|. |=-|+|.+ ..+..-
T Consensus 82 ~~~~~~~~~id~Ig~HGQTi~H~P~~~~TlQiG~--~~~ia~~tgi~VV~DFR~~Dia~GGqGAPLvP~fh~~Lf~~~~~ 159 (366)
T PRK09585 82 AEAGLSPEDIDAIGSHGQTVRHRPERGFTLQIGD--GALLAELTGITVVADFRRRDVAAGGQGAPLVPAFHAALFGHPDE 159 (366)
T ss_pred HHCCCCCCCEEEEECCCCCEEECCCCCEEEECCC--HHHHHHHHCCCEEHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 9849980363289758887687158863543398--89999881997607537989867789998467899999617787
Q ss_pred CCEEEEEECCCEEEEEECCCCCCEECCCCCCCCHHHHH-HHHHH-HCCCCCC-------HHHHHHH-HHHHCCCCCCCCC
Q ss_conf 84399970687479998375643000223363002388-88988-5288761-------0355666-5540573334586
Q gi|254781038|r 136 PYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECF-DKIAK-SLGLPYP-------GGVEIEK-AALMGDGKRFKFP 205 (363)
Q Consensus 136 PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda~Ge~~-DK~ar-~Lgl~yP-------gGp~ie~-~A~~g~~~~~~~P 205 (363)
| .+++==||=+.+-+...... ++ --|..+|+++ |...+ ..+.+|- -|...+. +.+.-+...|..|
T Consensus 160 ~-~~~lNIGGIaNiT~l~~~~~--~~--afD~GPgN~liD~~~~~~~~~~yD~~G~~A~~G~v~~~ll~~ll~~~yf~~~ 234 (366)
T PRK09585 160 P-RAVLNIGGIANLTLLPPGGP--VI--GFDTGPGNALIDAWVQRHTGGPYDKDGAWAASGKVDEALLERLLAHPYFALP 234 (366)
T ss_pred C-EEEEEECCEEEEEEECCCCC--EE--EECCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 6-69996144104667448996--57--7568852689999999851999689985782898199999998514751589
Q ss_pred CHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHH
Q ss_conf 11106887542210245899999985112012106889999999999999999999999987621445523654133458
Q gi|254781038|r 206 CPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVAS 285 (363)
Q Consensus 206 ~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaa 285 (363)
.|..-++. +|+..-+... +.+. .+....|+.+.+-+-.++.+.+-+ ..+ ..+++.++++||=+-
T Consensus 235 ~PKS~gre-~F~~~~l~~~----~~~~---~~ls~~D~laTlt~~ta~sI~~~~----~~~----~~~~~~i~v~GGG~~ 298 (366)
T PRK09585 235 PPKSTGRE-LFNLAWLERL----LAAF---PGLSPEDVQATLTELTAASIARAV----LLL----PPGPRELLVCGGGAR 298 (366)
T ss_pred CCCCCCHH-HCCHHHHHHH----HHHH---CCCCHHHHHHHHHHHHHHHHHHHH----HHC----CCCCCEEEEECCCCC
T ss_conf 99887957-6698999988----8764---159877899999999999999999----864----799668999788755
Q ss_pred HHHHHHHHHHHHHHCCCEEEECCHHH--CCC--HHHHHHHHHHHHHHC
Q ss_conf 79999999999986898899628788--772--589999999999984
Q gi|254781038|r 286 NHFIRASLIDLCVLHGFRFVAPPARL--CTD--NAVMIAWAALERMEA 329 (363)
Q Consensus 286 N~~LR~~l~~~~~~~~~~~~~P~~~~--ctD--NAaMIA~ag~~~~~~ 329 (363)
|.+|.++|++.+. +.++. +.-++ -.| .|.+.||.|+++++.
T Consensus 299 N~~L~~~l~~~l~--~~~v~-~~d~~gi~~d~~EA~~FA~La~~~~~~ 343 (366)
T PRK09585 299 NPTLMERLAALLP--GARVA-TTDALGIDPDAVEALAFAWLAVRTLRG 343 (366)
T ss_pred CHHHHHHHHHHCC--CCEEE-CHHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 7999999997689--98784-489809990499999999999999869
No 18
>pfam01869 BcrAD_BadFG BadF/BadG/BcrA/BcrD ATPase family. This family includes the BadF and BadG proteins, which are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase. A member from Aquifex aeolicus contains two copies of this region suggesting that the family may structurally dimerize. This family appears to be related to pfam00370.
Probab=98.69 E-value=3.1e-05 Score=56.17 Aligned_cols=275 Identities=19% Similarity=0.157 Sum_probs=129.6
Q ss_pred EEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC
Q ss_conf 87502602207788733888841898873113346212187145599999999699999999998389822453687406
Q gi|254781038|r 9 IGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTA 88 (363)
Q Consensus 9 LgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~ 88 (363)
||||.=.-.|-+.++ |.+++++...+..-...+ . ++ ...-.+++..++++++++++.+..+++.++++
T Consensus 1 lGID~GgTkt~~vl~---d~~g~il~~~~~~~~n~~----~-~~---~~~~~~~l~~~i~~~l~~~g~~~~~i~~~~~~- 68 (288)
T pfam01869 1 LGIDGGSTSTKAVLM---DDDGEVLGRAKSGSANIE----S-VG---VEAAVRNLKDAISEALKEAGLDPEDIDYIGVT- 68 (288)
T ss_pred CEEEECHHHEEEEEE---ECCCCEEEEEECCCCCCC----C-CC---HHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEE-
T ss_conf 969967234799999---299989999975788866----6-89---99999999999999999749985560389898-
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEE---CCCCC
Q ss_conf 643012567799999998875148643330367765301322567998439997068747999837564300---02233
Q gi|254781038|r 89 GPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDR---LGTTI 165 (363)
Q Consensus 89 gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~i---lg~T~ 165 (363)
|.|..+. ....+..+-.....+++ +++.-...+.+.. ..+ -.+.++|=-+..+..++ ++... -|.-+
T Consensus 69 g~g~~~~---~~~~~~~~~~~~~~~v~-v~~d~~~al~~~~----~~~-giv~IaGTGS~~~~~~~-G~~~~~gg~G~~~ 138 (288)
T pfam01869 69 GYGLAGV---DGEFADKIVREIFEEIT-VHTDGAVALAPAA----RGD-GVIDIGGTGSKVIGIDD-GKVVRFGGNGFCA 138 (288)
T ss_pred EECCCCC---CHHHHHHHHHCCCEEEE-EECCHHHHHCCCC----CCC-EEEEECCCCCEEEEEEC-CEEEEECCCCCCC
T ss_conf 7662224---42658998650350799-9806588823668----897-38998488855999949-9898855788774
Q ss_pred CCCHHHHHHHHHHHCCCCC-------CHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 6300238888988528876-------103556665540573334586111068875422102458999999851120121
Q gi|254781038|r 166 DDALGECFDKIAKSLGLPY-------PGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQ 238 (363)
Q Consensus 166 Dda~Ge~~DK~ar~Lgl~y-------PgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~ 238 (363)
.| -|-.++-..+.|.... |.....+.....-....... .........-+..+--.+.... ...+.
T Consensus 139 gd-~Gsg~~ig~~aL~~~~~~~d~~~~~t~l~~~~~~~~~~~~~~~---~~~~~~~~~~~a~fa~~v~~~a----~~gd~ 210 (288)
T pfam01869 139 GD-EGSFLEIAARALGIVLRELDGLAAKTTLTDVVMKALVDDLIRV---AYRPAAINSDCAVFAEQVVISA----LSGGI 210 (288)
T ss_pred CC-CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHH---HHCCCCCHHHHHHHHHHHHHHH----HCCCC
T ss_conf 88-6759999999998899986397877724688988603214566---6424565136789889999999----83992
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHH
Q ss_conf 06889999999999999999999999987621445523654133458799999999999868988996287887725899
Q gi|254781038|r 239 DIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVM 318 (363)
Q Consensus 239 ~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaM 318 (363)
...+|....-+.+++.+....++ . ......++++|||+.|..+++.+++.++++-...-+..|++...++|.
T Consensus 211 ~a~~Il~~~~~~la~~~~~~~~~-------l-~~~~~~vvl~GGv~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~A~ 282 (288)
T pfam01869 211 KAEDILAGAAESIALRVAALIKR-------L-GPVPDQVVLTGGVAKNEVLVKALRDELSEKILEVKVNVPPDPQYAGAI 282 (288)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-------C-CCCCCCEEEECCHHCCHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHH
T ss_conf 29999999999999999999984-------3-889997999894131599999999999975579947628986636599
Q ss_pred HHH
Q ss_conf 999
Q gi|254781038|r 319 IAW 321 (363)
Q Consensus 319 IA~ 321 (363)
-|.
T Consensus 283 GAa 285 (288)
T pfam01869 283 GAA 285 (288)
T ss_pred HHH
T ss_conf 999
No 19
>pfam03702 UPF0075 Uncharacterized protein family (UPF0075). The proteins is this family are about 370 amino acids long and have no known function.
Probab=98.67 E-value=6.4e-06 Score=60.95 Aligned_cols=296 Identities=22% Similarity=0.228 Sum_probs=167.6
Q ss_pred CEEEEE--ECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCC------CCC-CCCHH---HHHHHHHHHHHHHHHHHHH
Q ss_conf 468875--02602207788733888841898873113346212------187-14559---9999999699999999998
Q gi|254781038|r 6 KTVIGI--ETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGH------YGG-VVPEV---AARAHVDVLDILIKQTLLR 73 (363)
Q Consensus 6 ~~ILgI--ETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~------~GG-v~P~~---A~~~H~~~l~~li~~~l~~ 73 (363)
|.++|+ =||+|---+|+++.+..+-+++......+...-.+ ... .-++. ..+.-.+.....+++.+++
T Consensus 1 m~vIGlMSGTS~DGID~alv~~~~~~~~~i~~~~~~y~~~lr~~i~~~~~~~~~~~~~~~~l~~~~~~~~a~ai~~~i~~ 80 (363)
T pfam03702 1 MRYIGLMSGTSLDGVDAALVDIGLTKIELLASHSSPMPASLRQKLLDLCQGGATTLSRLGELDHQLGLLFADAVNELLQK 80 (363)
T ss_pred CEEEEEECCCCHHHHEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96999954657375716899988982899606032499999999999853698789999999999999999999999998
Q ss_pred CCCCCCCCCEEEE-----CCCC--CHHHHHHHHHHHHHHHHHHHCCCCCC---CHHHH----HHHHCCC----CCCCCCC
Q ss_conf 3898224536874-----0664--30125677999999988751486433---30367----7653013----2256799
Q gi|254781038|r 74 ANMQISDMDSIAV-----TAGP--GLMGGLIVGLMTAKAISYVSHKPFYA---INHLE----GHILTAR----LTDDIAF 135 (363)
Q Consensus 74 a~~~~~~id~Iav-----t~gP--G~~~~L~vG~~~Ak~la~~~~~Pli~---VnH~~----aH~~~~~----l~~~~~~ 135 (363)
++++.+|||+|+. --.| +....+.+|- +..||...++|+|. .+.|. |=-|+|. +..+...
T Consensus 81 ~~~~~~~Id~Ig~HGQTi~H~P~~~~~~TlQiG~--~~~iA~~tgi~VV~DFR~~Dia~GGqGAPLvP~~h~~Lf~~~~~ 158 (363)
T pfam03702 81 QNLKPSQIRAIGCHGQTVRHEPNGRFPFTMQIGD--PNLIAERTGITVVADFRRRDVAAGGQGAPLVPAFHEALFAKANE 158 (363)
T ss_pred CCCCCCCEEEEECCCCEEEECCCCCCCEEEECCC--HHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 3998202248955886057788999964466397--99997886997738766337766898999358999999659887
Q ss_pred CCEEEEEECCCEEEEEECCCCCCEECCCCCCCCHHHHH-HHH-HHHCCCCCC-------HHHHHHH-HHHHCCCCCCCCC
Q ss_conf 84399970687479998375643000223363002388-889-885288761-------0355666-5540573334586
Q gi|254781038|r 136 PYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECF-DKI-AKSLGLPYP-------GGVEIEK-AALMGDGKRFKFP 205 (363)
Q Consensus 136 PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda~Ge~~-DK~-ar~Lgl~yP-------gGp~ie~-~A~~g~~~~~~~P 205 (363)
|..+ +==||-+-+-+..+.. .++ .-|..+|+|+ |.. .+..+.+|- -|...+. +.+.-+...|..|
T Consensus 159 ~~~~-lNIGGIaNiT~l~~~~--~i~--afD~GPgN~liD~~~~~~~~~~yD~~G~~A~~G~v~~~ll~~ll~~~~f~~~ 233 (363)
T pfam03702 159 TRAV-LNIGGIANVSVLKPGA--PVL--GFDTGPGNALMDAWIQKHRGEPFDKNGAWAASGKVNHALLARLLADPYFALP 233 (363)
T ss_pred CEEE-EEECCCCEEEEECCCC--CEE--EECCCCHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 7389-9733700022213778--536--6278824789999999713668286817883898589999999745653268
Q ss_pred CHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHH
Q ss_conf 11106887542210245899999985112012106889999999999999999999999987621445523654133458
Q gi|254781038|r 206 CPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVAS 285 (363)
Q Consensus 206 ~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaa 285 (363)
.|...++. +|+..-+.. .+.+ .....|+.+.+-+-.++.+.+-+ ..+ ..+.+.++++||=+-
T Consensus 234 ~PKS~gre-~F~~~~~~~----~~~~-----~~~~~D~~aTlt~~ta~sIa~~i----~~~----~~~~~~iiv~GGG~~ 295 (363)
T pfam03702 234 APKSTGRE-LFNLPWLEK----KLAK-----FPVPEDVQATLVELTAVTIVDAL----LQA----GPDCERLLVCGGGAR 295 (363)
T ss_pred CCCCCCHH-HCCHHHHHH----HHCC-----CCCHHHHHHHHHHHHHHHHHHHH----HHC----CCCCCEEEEECCCCC
T ss_conf 99877646-459588766----5325-----89877899999999999999999----962----899758999788756
Q ss_pred HHHHHHHHHHHHHHCCCEEEECCHHHC--CC--HHHHHHHHHHHHHHC
Q ss_conf 799999999999868988996287887--72--589999999999984
Q gi|254781038|r 286 NHFIRASLIDLCVLHGFRFVAPPARLC--TD--NAVMIAWAALERMEA 329 (363)
Q Consensus 286 N~~LR~~l~~~~~~~~~~~~~P~~~~c--tD--NAaMIA~ag~~~~~~ 329 (363)
|.+|.++|++.+. +.++ .+.-++- .| .|.+.||.|+++++.
T Consensus 296 N~~L~~~l~~~l~--~~~v-~~~d~~g~~~~~~EA~~FA~La~~~~~~ 340 (363)
T pfam03702 296 NPLLMARLAELLP--NVDV-ASTDELGLDPDYMEAMAFAWLAYRRVNG 340 (363)
T ss_pred CHHHHHHHHHHCC--CCEE-ECHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 8899999997779--9988-4288839982289999999999999869
No 20
>pfam02543 CmcH_NodU Carbamoyltransferase. This family consists of NodU from Rhizobium and CmcH from Nocardia lactamdurans. NodU a Rhizobium nodulation protein involved in the synthesis of nodulation factors has 6-O-carbamoyltransferase-like activity. CmcH is involved in cephamycin (antibiotic) biosynthesis and has 3-hydroxymethylcephem carbamoyltransferase activity, EC:2.1.3.7 catalysing the reaction: Carbamoyl phosphate + 3-hydroxymethylceph-3-EM-4-carboxylate <= phosphate + 3-carbamoyloxymethylcephem.
Probab=98.39 E-value=3.8e-05 Score=55.64 Aligned_cols=194 Identities=23% Similarity=0.234 Sum_probs=107.6
Q ss_pred CCCCCCCCCCCCEEEEEECC----CEEEEEECCCCCCEECCCC----CCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q ss_conf 01322567998439997068----7479998375643000223----3630023888898852887-6103556665540
Q gi|254781038|r 126 TARLTDDIAFPYLVLLVSGG----HTQILLVRDVAHYDRLGTT----IDDALGECFDKIAKSLGLP-YPGGVEIEKAALM 196 (363)
Q Consensus 126 ~~~l~~~~~~PfL~LlvSGG----hT~l~~~~~~~~~~ilg~T----~Dda~Ge~~DK~ar~Lgl~-yPgGp~ie~~A~~ 196 (363)
++++.++.+--.|+|.+=|+ .+.+...++ ++++.+-.+ .+.++|..+-.+...||+. +.+--.+--||--
T Consensus 2 Safy~S~F~~a~liltiDG~Gd~~s~si~~~~~-~~i~~~~~~~~p~~~~SlG~~Y~~~T~~lGf~~~~~EgKvMGLA~Y 80 (360)
T pfam02543 2 SAYYMSPFAEAELVLCIDGGGDILSRLLSIGKG-GARFPVAVSSFPDSGYSLGLFYLSFTERLGFKPMSDEGKVMALAAY 80 (360)
T ss_pred CCCCCCCCCCCEEEEEEECCCCCHHEEEEEEEC-CEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHC
T ss_conf 613579998623899996998783049999709-8489988871798657458999999998399777605889869860
Q ss_pred CCCCCCCCC-CH-HCC-CCCCCCCCCHHH----HHHHHHHH----HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 573334586-11-106-887542210245----89999998----51120121068899999999999999999999999
Q gi|254781038|r 197 GDGKRFKFP-CP-LVQ-GTLCDFSFSGLK----TSVQKTIC----AFDVLEKQDIADICASFQVTVVRILQARLKQGFLL 265 (363)
Q Consensus 197 g~~~~~~~P-~p-~~~-~~~~dFSFSGLk----Tav~~~i~----~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~ 265 (363)
|++.....+ .. +.. ....+.+|.... ....+... ..+....+...|||+++|...-+.+.+.++.+...
T Consensus 81 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diAas~Q~~~E~~~~~~~~~~~~~ 160 (360)
T pfam02543 81 GSVDARIVALIDKLYELKLAGDSAYRAYINNLGPSLLKTHDVFRKSMLSLLKQREEDIAASAQRTLERLVEELLRHVYEE 160 (360)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89807899999998545625772000346754400555411101242110014256899999999999999999999997
Q ss_pred HHHHCCCCC-CEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 876214455-23654133458799999999999868988996287887725899999999999849
Q gi|254781038|r 266 FRKAFPHKQ-AVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAWAALERMEAG 330 (363)
Q Consensus 266 ~~~~~~~~~-~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ag~~~~~~g 330 (363)
+ +. +.|+++||||-|-..-.++.+...-. +++.||. |+|-+.=|+.|-+..++.+
T Consensus 161 ~------~~~~nlclaGGvaLN~~aN~~i~~~~~~~--~ifV~Pa--~~D~G~aiGAA~~~~~~~~ 216 (360)
T pfam02543 161 F------GIDRNLCIAGGVALNVKWNSKLRRRGLFD--DVWVPPA--MNDSGSALGAALLAKVQLG 216 (360)
T ss_pred H------CCCCEEEEECHHHHHHHHHHHHHHCCCCC--CCEECCC--CCCHHHHHHHHHHHHHHHC
T ss_conf 4------88761897070999999999888617776--6031789--8851567999999999854
No 21
>PRK09698 D-allose kinase; Provisional
Probab=98.05 E-value=0.0016 Score=44.32 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=77.8
Q ss_pred CCCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 88846887502602207788733888841898873113346212187145599999999699999999998389822453
Q gi|254781038|r 3 KIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMD 82 (363)
Q Consensus 3 ~~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id 82 (363)
||+++|+|||=--..+.++++ |.+++|+...+...... .. .+-.+.+..++.+.+.+.+ .++.
T Consensus 1 ~~~~~viGIDiGGT~i~~~l~---d~~g~i~~~~~~~t~~~------~~-----~~~~~~i~~~i~e~~~~~~---~~i~ 63 (302)
T PRK09698 1 KQHNVVAGIDMGATHIRFCLV---DAEGEILHCEKRRTAEV------IA-----PDLVSGISEMIDEQLRRFN---ARCH 63 (302)
T ss_pred CCCCEEEEEEECCCEEEEEEE---CCCCCEEEEEEECCCCC------CH-----HHHHHHHHHHHHHHHHHCC---CCCC
T ss_conf 977689999987324999999---69997999999669876------76-----7999999999999976518---8524
Q ss_pred EEEECCCCCHHH----------HHH----HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCC-CEEEEEECCCE
Q ss_conf 687406643012----------567----799999998875148643330367765301322567998-43999706874
Q gi|254781038|r 83 SIAVTAGPGLMG----------GLI----VGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFP-YLVLLVSGGHT 147 (363)
Q Consensus 83 ~Iavt~gPG~~~----------~L~----vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~P-fL~LlvSGGhT 147 (363)
.|+++. ||..- .|. -....++.|...+++|++=-|-.-+-++.-......... ++.+.++-|=-
T Consensus 64 gIgig~-pG~vd~~~g~v~~~~nl~~~~~~~~~l~~~l~~~~~~pv~veNDan~aa~~e~~~~~~~~~~~~~~~lGtGiG 142 (302)
T PRK09698 64 GLVMGF-PALVSKDKRTIISTPNLPLTAADLYDLADKLENTLNCPVFFSRDVNLQLSWDVVENRLTQQLVLGAYLGTGMG 142 (302)
T ss_pred EEEEEE-CCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCCCEEEEEEECCCCC
T ss_conf 699995-8960599998983387666667677469999998799989965376899999982898887499999746322
Q ss_pred EEEEEC
Q ss_conf 799983
Q gi|254781038|r 148 QILLVR 153 (363)
Q Consensus 148 ~l~~~~ 153 (363)
-=+.++
T Consensus 143 ~gii~~ 148 (302)
T PRK09698 143 FAVWMN 148 (302)
T ss_pred CEEEEC
T ss_conf 048974
No 22
>PRK03011 butyrate kinase; Provisional
Probab=97.30 E-value=0.02 Score=36.89 Aligned_cols=290 Identities=16% Similarity=0.183 Sum_probs=125.3
Q ss_pred CCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 88468875026022077887338888418988731133462121871455999999996999999999983898224536
Q gi|254781038|r 4 IKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDS 83 (363)
Q Consensus 4 ~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~ 83 (363)
|.|.||-|-.=.-.+=.++++.+ ..++...+.-..+.-..+ +.+. .+.+.-...+.+.|.+.++.++++++
T Consensus 1 ~mmkILviN~GSSS~K~alf~~~---~~~~~~~i~h~~~~~~~~----~~~~--~q~~~~~~~i~~~L~~~~~~~~~i~a 71 (356)
T PRK03011 1 MMMRILVINPGSTSTKIAVFEDE---KPVFEETLRHSEEELEKF----KTII--DQYEFRKQAILEFLEEHGIDISELDA 71 (356)
T ss_pred CCCEEEEECCCHHHHHHEEEECC---CHHHHHHCCCCHHHHCCC----CCCH--HHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 98649998678065620477088---463432144454553344----5400--03889999999999975998367628
Q ss_pred EEECCC---CCHHHHHH--------------------HHHHHHHHHHHHHCCCCC---CCHHHH----H-----------
Q ss_conf 874066---43012567--------------------799999998875148643---330367----7-----------
Q gi|254781038|r 84 IAVTAG---PGLMGGLI--------------------VGLMTAKAISYVSHKPFY---AINHLE----G----------- 122 (363)
Q Consensus 84 Iavt~g---PG~~~~L~--------------------vG~~~Ak~la~~~~~Pli---~VnH~~----a----------- 122 (363)
|+.--| |=-.+..+ .+.-.|..++..+++|.+ ++.|.+ +
T Consensus 72 v~~rGG~~~~v~gG~~~v~~~vl~~l~~~~~~~hp~nL~~i~a~~~a~~~~ipa~~~D~~~~~~m~~~A~~~glp~i~R~ 151 (356)
T PRK03011 72 VVGRGGLLKPIPGGTYRVNEAMLEDLKNGVYGEHASNLGAIIAYEIAKELGIPAFIVDPVVVDEMEPVARISGLPEIERK 151 (356)
T ss_pred EEEECCCCCCCCCCCEEECHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCHHHCCCHHHHHHCCCCCEEE
T ss_conf 99808977414798878589999999845667884430779998741010799797387225307677897478975167
Q ss_pred ---HHHCCCCC-----CCCC-----CCCEEEEEECCCEEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHCCC---CCCH
Q ss_conf ---65301322-----5679-----984399970687479998375643000223363002388889885288---7610
Q gi|254781038|r 123 ---HILTARLT-----DDIA-----FPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAKSLGL---PYPG 186 (363)
Q Consensus 123 ---H~~~~~l~-----~~~~-----~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl---~yPg 186 (363)
|-++-++. +.+. .-.++.|+=+|-|.-.+-++ .++|-+-| |+=-+-++|- .-|.
T Consensus 152 ~gFHGlS~~~va~~~a~~lg~~~~~~~~Iv~HLGnGaSi~Ai~~G--------ksvDTsmG--~p~eGl~m~tRsGdidp 221 (356)
T PRK03011 152 SIFHALNQKAVARRAAKELGKRYEELNLIVAHLGGGISVGAHRKG--------RVIDVNNA--LDGEGPFSPERAGGLPV 221 (356)
T ss_pred ECCHHHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCEEEEEECC--------EEEECCCC--CCCCCCCCCCCCCCCCH
T ss_conf 150278799999999999599878878999995798142344288--------17870799--89888878987899896
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3556665540573334586111068875422102458999999851-120121068899999999999999999999999
Q gi|254781038|r 187 GVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAF-DVLEKQDIADICASFQVTVVRILQARLKQGFLL 265 (363)
Q Consensus 187 Gp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~-~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~ 265 (363)
|..+. +.+++.-..-.+-.-+.++.++ .+.|| |+=.|-+++. +..+ +.+.+ +++..+.++.+.+-.
T Consensus 222 ~~v~~-l~~~~~~s~~el~~~Lnk~SGL-~g~sG--s~D~R~l~~~~~~gd--~~A~l-------A~d~f~yri~k~IGa 288 (356)
T PRK03011 222 GDLVE-LCFSGKYTKEELKKKLVGKGGL-VAYLG--TNDAREVEKRIEAGD--EKAKL-------VYEAMAYQIAKEIGA 288 (356)
T ss_pred HHHHH-HHHHCCCCHHHHHHHHHHCCCC-CCCCC--CCHHHHHHHHHHCCC--HHHHH-------HHHHHHHHHHHHHHH
T ss_conf 99999-9995699999999999746553-10279--951999999988879--88999-------999999999999999
Q ss_pred HHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHH-HHHHHHHHCCC
Q ss_conf 8762144552365413345879999999999986898899628788772589999-99999998499
Q gi|254781038|r 266 FRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIA-WAALERMEAGL 331 (363)
Q Consensus 266 ~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA-~ag~~~~~~g~ 331 (363)
+-.....++..||+.||++-|..|++++.+.+.--+ |=.-|-.+| -|=| ..|..|...|.
T Consensus 289 ~aa~L~G~vDaiVFTGGIgen~~l~~~i~~~~~~la-----pv~v~pg~~-Em~ala~galrvl~g~ 349 (356)
T PRK03011 289 MAAVLKGKVDAIVLTGGLAYSKRLVDWIKERVSWIA-----PVVVYPGED-EMEALAEGALRVLRGE 349 (356)
T ss_pred HHHHHCCCCCEEEECCCHHCCHHHHHHHHHHHCCEE-----EEEECCCHH-HHHHHHHHHHHHHCCC
T ss_conf 999739967889988851049999999998616020-----079738849-9999998699996398
No 23
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=97.20 E-value=0.025 Score=36.18 Aligned_cols=274 Identities=16% Similarity=0.094 Sum_probs=128.3
Q ss_pred EEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
Q ss_conf 88750260220778873388884189887311334621218714559999999969999999999838982245368740
Q gi|254781038|r 8 VIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVT 87 (363)
Q Consensus 8 ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt 87 (363)
.||||=---..-++++ |.+++++...+... .+. ....-.+.+..++++... +...+..|+++
T Consensus 2 ~lGiDIGGT~i~~~l~---d~~g~i~~~~~~~T--p~~---------~~~~~~~~i~~~i~~~~~----~~~~~~~iGig 63 (302)
T PRK13310 2 YYGFDIGGTKIELGVF---DEKLELQWEKRVPT--PRD---------SYDAFLDAVCELVAEADQ----RFGCKGSVGIG 63 (302)
T ss_pred EEEEEECCHHEEEEEE---ECCCCEEEEEEEEC--CCC---------CHHHHHHHHHHHHHHHHH----HCCCCCEEEEE
T ss_conf 9999917004999999---78997999999879--999---------999999999999999876----55887869999
Q ss_pred CCCCHH------------HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC-CCC-CCCEEEEEECCCEEEEEEC
Q ss_conf 664301------------25677999999988751486433303677653013225-679-9843999706874799983
Q gi|254781038|r 88 AGPGLM------------GGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTD-DIA-FPYLVLLVSGGHTQILLVR 153 (363)
Q Consensus 88 ~gPG~~------------~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~-~~~-~PfL~LlvSGGhT~l~~~~ 153 (363)
. ||.. ++ .-+....+-|...+++|+.=-|...+-++.=.+.- .-. -.++.+.++-|---=+.++
T Consensus 64 ~-pG~vd~~~g~v~~~n~~~-~~~~~l~~~L~~~~g~pV~ieNDanaaalgE~~~G~~~~~~~~~~v~lGTGiGggii~~ 141 (302)
T PRK13310 64 I-PGMPETEDGTLYAANVPA-ASGKPLRADLSARLGRDVRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLVFN 141 (302)
T ss_pred E-ECCCCCCCCEEEECCCCC-CCCCCHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEC
T ss_conf 8-576529998899369864-14897599999997998899516879999988617568998389998337754159989
Q ss_pred CCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCH--HHHHHHHHHHH
Q ss_conf 7564300022336300238888988528876103556665540573334586111068875422102--45899999985
Q gi|254781038|r 154 DVAHYDRLGTTIDDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSG--LKTSVQKTICA 231 (363)
Q Consensus 154 ~~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSG--LkTav~~~i~~ 231 (363)
+. ++ .-..-.+||. +-+. +|+.+...+..-+ . ..++.--+..-++=-.|| +.....++. .
T Consensus 142 G~----l~-~G~~g~AGEi----GHi~-v~~~~~~~~~~~~-----p--~~~c~cG~~GclE~~~Sg~~l~~~~~~~~-~ 203 (302)
T PRK13310 142 GK----PI-SGRSYITGEF----GHMR-LPVDALTLLGLDA-----P--LRRCGCGQKGCIENYLSGRGFEWLYQHYY-G 203 (302)
T ss_pred CE----EC-CCCCCCCCCC----CCEE-CCCCCCCCCCCCC-----C--CCCCCCCCCCCHHHCCCHHHHHHHHHHHH-C
T ss_conf 84----74-6988706676----5314-1677543456666-----6--54124677663342014899999999850-8
Q ss_pred HCCCCCCCHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 11201210688999999------999999999999999998762144552365413345879999999999986898899
Q gi|254781038|r 232 FDVLEKQDIADICASFQ------VTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFV 305 (363)
Q Consensus 232 ~~~~~~~~~~diaasfQ------~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~ 305 (363)
+..+..++...++ ..+++...+.+-+++...-.. .++..+|++|||+....+.+.+++...++-.+..
T Consensus 204 ----~~~~~~~i~~~~~~gd~~A~~~i~~~~~~la~~la~~i~~--ldPe~iviGGGvs~~~~l~~~l~~~~~~~~~~~~ 277 (302)
T PRK13310 204 ----QPLQAPEIIALYYQGDEQAVAHVERFLDLLAICLGNILTI--VDPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVA 277 (302)
T ss_pred ----CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--HCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf ----9999899999998789989999999999999999999998--2988899978625708899999999998726747
Q ss_pred E-CCH--HHCCCHHHHHHHHHHH
Q ss_conf 6-287--8877258999999999
Q gi|254781038|r 306 A-PPA--RLCTDNAVMIAWAALE 325 (363)
Q Consensus 306 ~-P~~--~~ctDNAaMIA~ag~~ 325 (363)
- |+. .--.|.|.||+.+.+.
T Consensus 278 ~~~~I~~a~lG~~AGliGAA~L~ 300 (302)
T PRK13310 278 RVPRIEKARHGDAGGVRGAAFLH 300 (302)
T ss_pred CCCEEEECCCCCHHHHHHHHHHH
T ss_conf 79848976746879999999863
No 24
>PRK09557 fructokinase; Reviewed
Probab=97.19 E-value=0.026 Score=36.08 Aligned_cols=261 Identities=15% Similarity=0.162 Sum_probs=123.4
Q ss_pred EEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
Q ss_conf 88750260220778873388884189887311334621218714559999999969999999999838982245368740
Q gi|254781038|r 8 VIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVT 87 (363)
Q Consensus 8 ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt 87 (363)
.||||=--....++++ |.+++++....... . .....+..+.+..+++++... ..++..|.++
T Consensus 2 ~iGiDIGGT~i~~~lv---d~~G~il~~~~~~t---~--------~~~~~~~~~~i~~li~~~~~~----~~~~~~IGIg 63 (301)
T PRK09557 2 RIGIDLGGTKIEVIAL---DDAGEELFRKRLPT---P--------RDDYQQTIEAIATLVDMAEQA----TGQRGTVGVG 63 (301)
T ss_pred EEEEEECCCEEEEEEE---ECCCCEEEEEEEEC---C--------CCCHHHHHHHHHHHHHHHHHH----HCCCCEEEEE
T ss_conf 8999987320999999---79997999999879---9--------988799999999999998876----3887769999
Q ss_pred CCCCHHHH-----------HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCC--CCCCEEEEEECCCEEEEEECC
Q ss_conf 66430125-----------67799999998875148643330367765301322567--998439997068747999837
Q gi|254781038|r 88 AGPGLMGG-----------LIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDI--AFPYLVLLVSGGHTQILLVRD 154 (363)
Q Consensus 88 ~gPG~~~~-----------L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~--~~PfL~LlvSGGhT~l~~~~~ 154 (363)
. ||..-. ..-+....+-|+..+++|+.=.|...+.++.-.+.-.- .--|+.+.++-|---=+..++
T Consensus 64 ~-PG~vd~~~G~v~~~~~~~~~~~~l~~~l~~~~~~pV~v~NDanaaalgE~~~G~~~g~~~~~~~tlGtGiGggiv~~G 142 (301)
T PRK09557 64 I-PGVISPYTGLVKNANSTWLNGQPLDKDLSARLNREVRLANDANCLAVSEAVDGAAAGKQVVFAVIIGTGCGAGVAING 142 (301)
T ss_pred E-ECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEECC
T ss_conf 2-077719999896688642168547999999879988994619899999998387788873999985255430699878
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHCCCCCC--------HHH--------HHHHHHHHCC-CCCCCCCCHHCCCCCCCCC
Q ss_conf 5643000223363002388889885288761--------035--------5666554057-3334586111068875422
Q gi|254781038|r 155 VAHYDRLGTTIDDALGECFDKIAKSLGLPYP--------GGV--------EIEKAALMGD-GKRFKFPCPLVQGTLCDFS 217 (363)
Q Consensus 155 ~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~yP--------gGp--------~ie~~A~~g~-~~~~~~P~p~~~~~~~dFS 217 (363)
. ++ .-.+-.+||. +- +-+||. .|+ -+|.++...- ...+. .......
T Consensus 143 ~----l~-~G~~g~AGEi----GH-~~l~~~~~~~~~~~~~~~C~CG~~GclE~~~S~~~l~~~~~----~~~~~~~--- 205 (301)
T PRK09557 143 R----VH-IGGNGIAGEW----GH-NPLPWMDEDEFRYRNETPCYCGKQGCIETFISGTGFATDYR----RLSGKAL--- 205 (301)
T ss_pred E----EE-CCCCCCCCCC----CC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHH----HHCCCCC---
T ss_conf 1----72-2788746665----77-75654563212468886435788556888747699999999----8248988---
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHH
Q ss_conf 10245899999985112012106889999999999999999999999987621445523654133458799999999999
Q gi|254781038|r 218 FSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLC 297 (363)
Q Consensus 218 FSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~ 297 (363)
++. .+.+..++.+ .+|.. +++...+.+-+++...-. -.++..+|++|||+....|...+++..
T Consensus 206 -~~~--~i~~~a~~gd--------~~a~~----~~~~~~~~l~~~la~~i~--~ldPe~IVlGGGvs~~~~l~~~l~~~l 268 (301)
T PRK09557 206 -KGS--EIIRLVEEGD--------PVAEL----AFERYEDRLAKSLAHVIN--ILDPDVIVLGGGMSNVDRLYPTLPALL 268 (301)
T ss_pred -CHH--HHHHHHHCCC--------HHHHH----HHHHHHHHHHHHHHHHHH--HCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf -889--9999998789--------99999----999999999999985577--339888999681116788999999999
Q ss_pred HHCCC------EEEECCHHHCCCHHHHHHHHHH
Q ss_conf 86898------8996287887725899999999
Q gi|254781038|r 298 VLHGF------RFVAPPARLCTDNAVMIAWAAL 324 (363)
Q Consensus 298 ~~~~~------~~~~P~~~~ctDNAaMIA~ag~ 324 (363)
+++-+ ++.. .--.|+|.||+.|.+
T Consensus 269 ~~~~~~~~~~~~I~~---a~lg~dAGiiGAA~L 298 (301)
T PRK09557 269 KQYVFGGECETPVRK---ALHGDSSGVRGAAWL 298 (301)
T ss_pred HHHCCCCCCCCEEEE---CCCCCHHHHHHHHHC
T ss_conf 976036778980897---673685866411032
No 25
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=97.02 E-value=0.037 Score=34.98 Aligned_cols=261 Identities=16% Similarity=0.152 Sum_probs=119.9
Q ss_pred CEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 46887502602207788733888841898873113346212187145599999999699999999998389822453687
Q gi|254781038|r 6 KTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIA 85 (363)
Q Consensus 6 ~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Ia 85 (363)
|.+||||=---..-++++ |.+++++........ ... -| ..-.+.+..++++.. .+++.|+
T Consensus 1 M~~lgiDiGGT~ik~~lv---d~~G~i~~~~~~~t~---~~~---~~----~~~~~~i~~~~~~~~-------~~~~~ig 60 (291)
T PRK05082 1 MTTLAIDIGGTKIAAALV---GEDGQISQRRQIPTP---ASQ---TP----EALRDALEALVSPLQ-------AQADRVA 60 (291)
T ss_pred CCEEEEEECCCEEEEEEE---CCCCCEEEEEEEECC---CCC---CH----HHHHHHHHHHHHHHH-------HHCCEEE
T ss_conf 969999957340999999---599959999999799---988---99----999999999999988-------5569688
Q ss_pred ECCCCCH-------------HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCC-CCCEEEEEECCCEEEEE
Q ss_conf 4066430-------------125677999999988751486433303677653013225679-98439997068747999
Q gi|254781038|r 86 VTAGPGL-------------MGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIA-FPYLVLLVSGGHTQILL 151 (363)
Q Consensus 86 vt~gPG~-------------~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~-~PfL~LlvSGGhT~l~~ 151 (363)
++. ||. .++ ..+....+.|...+++|++=-|-..+.++.-.....-. ..|+.+.++-|=--=+.
T Consensus 61 i~~-pG~v~~~~~~~~~~~nl~~-~~~~pl~~~l~~~~~~pv~v~NDan~aalgE~~~~~~~~~~~v~ltlGTGIGggiv 138 (291)
T PRK05082 61 VAS-TGIINDGVLTALNPHNLGG-LLHFPLVQTLEQITDLPTIALNDAQAAAWAEYQALEDDIDNMVFITVSTGVGGGIV 138 (291)
T ss_pred ECC-EEEECCCEEEEECCCCCCC-CCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEE
T ss_conf 742-2205498669966877787-56975699999977989899750678798886534678887899997566453799
Q ss_pred ECCCCCCEECCCCCCCCHHHH----HHHHHHHCCCC-------CCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCH
Q ss_conf 837564300022336300238----88898852887-------6103556665540573334586111068875422102
Q gi|254781038|r 152 VRDVAHYDRLGTTIDDALGEC----FDKIAKSLGLP-------YPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSG 220 (363)
Q Consensus 152 ~~~~~~~~ilg~T~Dda~Ge~----~DK~ar~Lgl~-------yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSG 220 (363)
.++. ++ .--.-.+||. .|.-++..+-+ |-.|..+.+.++.. .. +.++
T Consensus 139 ~~G~----l~-~G~~g~AGEiGH~~v~~~g~~c~cG~~GclE~~~Sg~al~~~~~~~---------------~~--~~~~ 196 (291)
T PRK05082 139 LNGK----LL-TGPGGLAGHIGHTLADPHGPVCGCGRRGCVEAIASGRAIAAAAQGW---------------LA--GCDA 196 (291)
T ss_pred ECCC----CC-CCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC---------------CC--CCCH
T ss_conf 8994----04-7888737744578864899867999956599987499999997522---------------68--9999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHC
Q ss_conf 45899999985112012106889999999999999999999999987621445523654133458799999999999868
Q gi|254781038|r 221 LKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLH 300 (363)
Q Consensus 221 LkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~ 300 (363)
+. +.... ...++ .|...-+...+.|..-+...+.. .++..+|++|||+.+..+-+.+++..+++
T Consensus 197 -~~-i~~~a---~~gd~-----~a~~~~~~~~~~La~~i~nl~~~------ldPe~IviGGGis~~~~~l~~i~~~l~~~ 260 (291)
T PRK05082 197 -KT-VFERA---GQGDE-----QAQALINRSAQAIARLIADLKAT------LDCQCVVLGGSVGLAEGYLELVEAYLAQE 260 (291)
T ss_pred -HH-HHHHH---HCCCH-----HHHHHHHHHHHHHHHHHHHHHHH------HCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf -99-99999---87998-----99999999999999999999984------18798999483104176999999999854
Q ss_pred CCEEEECCHHHC--CCHHHHHHHHHHHHH
Q ss_conf 988996287887--725899999999999
Q gi|254781038|r 301 GFRFVAPPARLC--TDNAVMIAWAALERM 327 (363)
Q Consensus 301 ~~~~~~P~~~~c--tDNAaMIA~ag~~~~ 327 (363)
- ..+.++...| .|+|.+|+.+.+-+-
T Consensus 261 ~-~~~~~~i~~a~lg~dAgliGAA~lA~~ 288 (291)
T PRK05082 261 P-AIYHVPLLAAHYRHDAGLLGAALWAQG 288 (291)
T ss_pred C-CCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 7-777986998673686889969999862
No 26
>pfam03630 Fumble Fumble. Fumble is required for cell division in Drosophila. Mutants lacking fumble exhibit abnormalities in bipolar spindle organisation, chromosome segregation, and contractile ring formation. Analyses have demonstrated that encodes three protein isoforms, all of which contain a domain with high similarity to the pantothenate kinases of A. nidulans and mouse. A role of fumble in membrane synthesis has been proposed.
Probab=96.95 E-value=0.042 Score=34.61 Aligned_cols=210 Identities=17% Similarity=0.142 Sum_probs=117.6
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC-CC-------------------------CCC
Q ss_conf 2453687406643012567799999998875148643330367765301-32-------------------------256
Q gi|254781038|r 79 SDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTA-RL-------------------------TDD 132 (363)
Q Consensus 79 ~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~-~l-------------------------~~~ 132 (363)
.....|++|-|=- .-++.-+.-.+++++.-..-|+.=+.-. ++ ..+
T Consensus 70 ~~~~~i~aTGGGA--------~Kf~~~~~~~l~i~v~k~DEm~~li~G~~fll~~~~~E~f~~~~~~~~~~~~~~~~~~~ 141 (329)
T pfam03630 70 KLTTVLCATGGGA--------YKFEELFRENLNVKLQKEDEMDCLIQGLNFLLKNIPAECFTYSNDTDGEKTEFQQINND 141 (329)
T ss_pred CCCCEEEEECCHH--------HHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 6763899978608--------99999999870996366027888998999998349752689706888421123567777
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCC
Q ss_conf 79984399970687479998375643000223363002388889885288761035566655405733345861110688
Q gi|254781038|r 133 IAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGT 212 (363)
Q Consensus 133 ~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~ 212 (363)
-.||||.+-+==|.+ ++.|.+..+|+.+|.|- . =|=.|==.+++| .+...=-++.++|++||....++-.-=.-+.
T Consensus 142 ~~yPyllVNIGSGvS-i~kV~~~~~~~RVgGts-i-GGGT~~GL~~LL-tg~~~fdEll~lA~~Gd~~~vDllVgDIYg~ 217 (329)
T pfam03630 142 DLYPYLLVNIGSGVS-ILKVDGPDQFERVGGSS-L-GGGTFLGLGSLL-TGCTSFDELLDMAQKGDNSNVDMLVRDIYGG 217 (329)
T ss_pred CCCCEEEEEECCCEE-EEEEECCCCEEEECCCC-C-CCHHHHHHHHHH-CCCCCHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf 777439998168769-99992698448834757-6-651199999996-0999999999998668950011312444188
Q ss_pred CCCCCCCHHHHH-----HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHH-H
Q ss_conf 754221024589-----9999985112012106889999999999999999999999987621445523654133458-7
Q gi|254781038|r 213 LCDFSFSGLKTS-----VQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVAS-N 286 (363)
Q Consensus 213 ~~dFSFSGLkTa-----v~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaa-N 286 (363)
++ +==||++. +-+...+.+..++...+|+|+|....|.+.+..-.-.. +..++++.++++|+--+ |
T Consensus 218 ~y--~~~gL~~~~~ASsFGK~~~~~~~~~~~~~eDia~SLl~mI~~nIg~ia~l~------A~~~~i~~I~F~G~fi~~~ 289 (329)
T pfam03630 218 DY--SKFGLKGDLIASSFGKVFRELKRLEDFSPEDIARSLLRMISNNIGQIAYLC------ALRFNLKRIYFGGSFIRNN 289 (329)
T ss_pred CC--CCCCCCCCEEEECCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH------HHHCCCCEEEEECCCCCCC
T ss_conf 55--567999876431254500003341007878999999999999999999999------9983998899965311588
Q ss_pred HHHHHHHH---HHHHHCCCEEEECC
Q ss_conf 99999999---99986898899628
Q gi|254781038|r 287 HFIRASLI---DLCVLHGFRFVAPP 308 (363)
Q Consensus 287 ~~LR~~l~---~~~~~~~~~~~~P~ 308 (363)
...++.+. ++-.+.+.+.+|=.
T Consensus 290 ~~tm~~ls~ai~~ws~g~~ka~FL~ 314 (329)
T pfam03630 290 PITMKTLSYAINYWSKGELKAYFLR 314 (329)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 8899999999999736870389995
No 27
>PTZ00294 glycerol kinase; Provisional
Probab=96.91 E-value=0.046 Score=34.36 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCH-HHCCCHHH
Q ss_conf 06889999999999999999999999987621445523654133458799999999999868988996287-88772589
Q gi|254781038|r 239 DIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPA-RLCTDNAV 317 (363)
Q Consensus 239 ~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~-~~ctDNAa 317 (363)
++.+|..++ .|-+.=.++..++.+++.....++.|.++||.+.|..+++.+.+.+ |.++..|+. +-..--||
T Consensus 383 ~~~~i~RAv----lEgia~~~r~~~e~l~~~~G~~~~~I~~~GG~a~s~lw~Qi~ADv~---g~pV~~~~~~e~~alGaA 455 (510)
T PTZ00294 383 TRAHIIRAA----LEAIALQLNDVVLAMKRDSGIELNSLRVDGGLTKNKLLMQIQADIL---GVKLEVPEMHETTALGAA 455 (510)
T ss_pred CHHHHHHHH----HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHCHHHHHHHHHHH---CCEEEECCCCCHHHHHHH
T ss_conf 999999999----9989999999999999860999787999778323899999999965---984794688870899999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254781038|r 318 MIAWAALERM 327 (363)
Q Consensus 318 MIA~ag~~~~ 327 (363)
|+|..|.-.|
T Consensus 456 ilAavg~G~~ 465 (510)
T PTZ00294 456 LCAGLAAGVW 465 (510)
T ss_pred HHHHHHHCCC
T ss_conf 9999981989
No 28
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=96.76 E-value=0.059 Score=33.58 Aligned_cols=278 Identities=19% Similarity=0.222 Sum_probs=143.6
Q ss_pred CCCCCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 98888468875026022077887338888418988731133462121871455999999996999999999983898224
Q gi|254781038|r 1 MSKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISD 80 (363)
Q Consensus 1 m~~~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~ 80 (363)
+..+.+.++|||=.-..+.++++ |.+++++............. ..-.+.|..++++.+.+.+ .+
T Consensus 1 ~~~~~~~~lgidIggt~i~~~l~---d~~g~~l~~~~~~~~~~~~~----------~~~~~~i~~~i~~~~~~~~---~~ 64 (314)
T COG1940 1 LNPEAMTVLGIDIGGTKIKVALV---DLDGEILLRERIPTPTPDPE----------EAILEAILALVAELLKQAQ---GR 64 (314)
T ss_pred CCCCCEEEEEEEECCCEEEEEEE---ECCCCEEEEEEEECCCCCCH----------HHHHHHHHHHHHHHHHHCC---CC
T ss_conf 99876299999988978999999---37997898899877888845----------6799999999999987527---67
Q ss_pred CCEEEECC-CCCHHH-----------HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC-CCC-CCEEEEEECCC
Q ss_conf 53687406-643012-----------56779999999887514864333036776530132256-799-84399970687
Q gi|254781038|r 81 MDSIAVTA-GPGLMG-----------GLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDD-IAF-PYLVLLVSGGH 146 (363)
Q Consensus 81 id~Iavt~-gPG~~~-----------~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~-~~~-PfL~LlvSGGh 146 (363)
.+.|+++. +||... ...-+...++.|...+++|+.=-|...+=+++-.+... -.+ -|+.+.++=|-
T Consensus 65 ~~~iGIgi~~pg~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~Pv~veNDan~aAlaE~~~g~~~~~~~~~~i~~gtGI 144 (314)
T COG1940 65 VAIIGIGIPGPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLGLPVFVENDANAAALAEAWFGAGRGIDDVVYITLGTGI 144 (314)
T ss_pred CCEEEEEEEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCCCCEEEEEEECCCE
T ss_conf 75699999764612687367425766544467799999998899879925199999999872877788749999989974
Q ss_pred EEEEEECCCC-------CCEECCCCCCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCC
Q ss_conf 4799983756-------430002233630023888898852887-61035566655405733345861110688754221
Q gi|254781038|r 147 TQILLVRDVA-------HYDRLGTTIDDALGECFDKIAKSLGLP-YPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSF 218 (363)
Q Consensus 147 T~l~~~~~~~-------~~~ilg~T~Dda~Ge~~DK~ar~Lgl~-yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSF 218 (363)
--=+..++.- --| +|.+.=+.-|+ ..|++.=-|. |-.+..+.+.+.+ . ++.+.. . .
T Consensus 145 G~giv~~g~l~~G~~g~aGe-~Gh~~v~~~g~--c~cG~~GclE~~as~~al~~~~~~----~--~~~~~~-----~--~ 208 (314)
T COG1940 145 GGGIIVNGKLLRGANGNAGE-IGHMVVDPDGE--CGCGRRGCLETYASGRAILRRAAE----A--LESEAG-----E--L 208 (314)
T ss_pred EEEEEECCEECCCCCCCCCC-CCCCEECCCCC--CCCCCCCCHHHHCCHHHHHHHHHH----H--CCCCCC-----C--C
T ss_conf 89999899750589986760-58713168886--668887707663077999986432----0--144445-----6--7
Q ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEH-HHHHH-HHHHHHHHHH
Q ss_conf 024589999998511201210688999999999999999999999998762144552365413-34587-9999999999
Q gi|254781038|r 219 SGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSG-GVASN-HFIRASLIDL 296 (363)
Q Consensus 219 SGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~G-GVaaN-~~LR~~l~~~ 296 (363)
+ .....+.....+ ..+..+.+...+.|..-+-..+..+ ++..++++| |++.. ..++..+++.
T Consensus 209 ~-----~~~i~~~a~~gd-----~~a~~~~~~~~~~la~~ianl~~~~------~P~~IvigG~~~~~~~~~~~~~l~~~ 272 (314)
T COG1940 209 T-----AKDIFELAAAGD-----PLAKEVIERAADYLARGLANLINLL------DPEVIVIGGGGVSALGDLLLPRLRKL 272 (314)
T ss_pred C-----HHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHH------CCCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 8-----999999987589-----8899999999999999999999973------99749997964566678899999999
Q ss_pred HHHCCCE-EEECCHH--HC-CCHHHHHHHHHHHH
Q ss_conf 9868988-9962878--87-72589999999999
Q gi|254781038|r 297 CVLHGFR-FVAPPAR--LC-TDNAVMIAWAALER 326 (363)
Q Consensus 297 ~~~~~~~-~~~P~~~--~c-tDNAaMIA~ag~~~ 326 (363)
...+-.. ...++.. -+ .++|.+++.+-+..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~a~~~ga~~~~~ 306 (314)
T COG1940 273 LAKYLFPPVLRPRIVEAALGGNDAGLIGAALLAL 306 (314)
T ss_pred HHHHCCCCCCCCCEEEHHCCCCCHHHHHHHHHHH
T ss_conf 8764032102342010001564332564898875
No 29
>PRK00047 glpK glycerol kinase; Provisional
Probab=96.16 E-value=0.035 Score=35.19 Aligned_cols=80 Identities=16% Similarity=0.229 Sum_probs=55.1
Q ss_pred CCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 88468875026022077887338888418988731133462121871455999999996999999999983898224536
Q gi|254781038|r 4 IKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDS 83 (363)
Q Consensus 4 ~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~ 83 (363)
|+++|||||-..-.+=++|+ |.+|++++.........+.+-|.+-+. ....-+.+...+++++.+++++..+|.+
T Consensus 3 m~~yvlgiD~GTts~Ka~l~---d~~G~~~a~~~~~~~~~~p~~g~~EqD--p~~~W~~~~~~i~~~~~~~~i~~~~I~a 77 (498)
T PRK00047 3 MKKYILALDQGTTSSRAIIF---DHKGNIVSVAQKEFTQIFPQPGWVEHD--PNEIWASQLSVIAEALAKAGISPDQIAA 77 (498)
T ss_pred CCCEEEEEECCCCEEEEEEE---CCCCCEEEEEEECCCCCCCCCCCEEEC--HHHHHHHHHHHHHHHHHHCCCCHHHEEE
T ss_conf 76879999746330356699---699999999985256205999857788--9999999999999999974998667799
Q ss_pred EEECC
Q ss_conf 87406
Q gi|254781038|r 84 IAVTA 88 (363)
Q Consensus 84 Iavt~ 88 (363)
|++|.
T Consensus 78 Igis~ 82 (498)
T PRK00047 78 IGITN 82 (498)
T ss_pred EEEEC
T ss_conf 99947
No 30
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.2 Score=29.96 Aligned_cols=246 Identities=22% Similarity=0.255 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEEC------CCCCHHHHHHHHHHHHHHHHHHHCCCCCC------CHH-HHHHHHCCCC
Q ss_conf 9999999999838982245368740------66430125677999999988751486433------303-6776530132
Q gi|254781038|r 63 LDILIKQTLLRANMQISDMDSIAVT------AGPGLMGGLIVGLMTAKAISYVSHKPFYA------INH-LEGHILTARL 129 (363)
Q Consensus 63 l~~li~~~l~~a~~~~~~id~Iavt------~gPG~~~~L~vG~~~Ak~la~~~~~Pli~------VnH-~~aH~~~~~l 129 (363)
....+.+.+.+.++...||++|.+- ..|+-.+ +.+.+.-+-.|+...+|+.++ +-| =||--++|.+
T Consensus 75 ~a~av~~ll~~~~l~~~~i~~iG~HGQTV~H~p~~~~~-~t~Qlgd~~~iA~~TGi~~v~dfR~~D~a~GGqGAPLvPA~ 153 (371)
T COG2377 75 HAQAVAALLAEQGLLPRDIRAIGCHGQTVLHRPPGHAP-DTVQLGDGPLIAELTGITVVGDFRRRDMAAGGQGAPLVPAF 153 (371)
T ss_pred HHHHHHHHHHHCCCCHHHCCEEECCCCCCCCCCCCCCC-EEEECCCHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 99999999997299977682640478422578998888-02234863777998697647661233445688888650133
Q ss_pred ----CCCCCCCCEEEEEECCCEEEEEECCCCCCEECCCCCCCCHHHH-HHHHHH-HCCCCC--------CHHHHHHHHHH
Q ss_conf ----2567998439997068747999837564300022336300238-888988-528876--------10355666554
Q gi|254781038|r 130 ----TDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGEC-FDKIAK-SLGLPY--------PGGVEIEKAAL 195 (363)
Q Consensus 130 ----~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda~Ge~-~DK~ar-~Lgl~y--------PgGp~ie~~A~ 195 (363)
......+ .+.+==||=.-|.+...-. .++| .|-..|+. +|--.. ..|.+| .|...-..+++
T Consensus 154 H~Al~~~~~~~-r~vlNiGGIaNlt~l~~~~--~v~g--~DtGPgN~llD~wi~~~~g~~yD~~g~~A~~G~v~~~ll~~ 228 (371)
T COG2377 154 HAALARAPRER-RAVLNIGGIANLTYLPPGG--PVLG--FDTGPGNMLLDAWIQAHGGKPYDKDGAWAASGKVDEALLAR 228 (371)
T ss_pred HHHHHCCCCCC-EEEEECCCEEEEEECCCCC--CEEE--EECCCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHH
T ss_conf 26765489987-6999526557777617998--3465--30688604899999983288767674522158968799999
Q ss_pred HCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 05733345861110688754221024589999998511201210688999999999999999999999998762144552
Q gi|254781038|r 196 MGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQA 275 (363)
Q Consensus 196 ~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~ 275 (363)
.-+...|..|.|...++ .+|..-+|.++.... ...+.+|+.+..-+...+.+++... ......+
T Consensus 229 ll~~p~F~~~~PkStgR-e~F~~~wl~~~~~~~-------~~l~a~Dv~aTL~eltA~tIv~s~~--------~~~~~p~ 292 (371)
T COG2377 229 LLAHPYFALPAPKSTGR-ELFNLQWLEQHLDDT-------QLLNAEDVQATLVELTAATIVKSVA--------TLQGDPR 292 (371)
T ss_pred HHHCCCCCCCCCCCCCC-CCCCHHHHHHHHHHC-------CCCCHHHHHHHHHHHHHHHHHHHHH--------HCCCCCC
T ss_conf 85287656889555784-310115689887432-------6889899999999977999999986--------4457886
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHHCCCEEEE-CCHHHCCCH--HHHHHHHHHHHHHCCCCC
Q ss_conf 3654133458799999999999868988996-287887725--899999999999849998
Q gi|254781038|r 276 VLVVSGGVASNHFIRASLIDLCVLHGFRFVA-PPARLCTDN--AVMIAWAALERMEAGLPA 333 (363)
Q Consensus 276 ~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~-P~~~~ctDN--AaMIA~ag~~~~~~g~~~ 333 (363)
.++|+||=+-|..|+.+|...++ +..+.- -+..+..|. |.--||+++.+ ..|.+.
T Consensus 293 ~l~vcGGG~~N~llm~rLa~l~~--g~~V~~t~~~g~~gd~~EA~afA~LA~r~-l~g~P~ 350 (371)
T COG2377 293 RLVVCGGGRRNPLLMARLAALLE--GVEVATTDEAGLDGDAVEAEAFAWLAWRT-LEGLPG 350 (371)
T ss_pred EEEEECCCCCCHHHHHHHHHHCC--CCEEEECCCCCCCCCHHHHHHHHHHHHHH-HHCCCC
T ss_conf 24762487557899999997568--98663112048781034678999999999-808999
No 31
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=95.59 E-value=0.14 Score=31.03 Aligned_cols=194 Identities=14% Similarity=0.156 Sum_probs=98.6
Q ss_pred HHCCCCCCC-HHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCC--------------------CCEECCCCCCC
Q ss_conf 514864333-036776530132256799843999706874799983756--------------------43000223363
Q gi|254781038|r 109 VSHKPFYAI-NHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVA--------------------HYDRLGTTIDD 167 (363)
Q Consensus 109 ~~~~Pli~V-nH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~--------------------~~~ilg~T~Dd 167 (363)
+..+|++++ .|=.+=...+ .+...| =...+|-|+..++.+.... .|..+...
T Consensus 207 ~~~ipVi~~~ghDtasA~~g---~~~~~~-g~a~~s~GTwsl~g~~~~~P~~~~~~~~~~~tnegg~~g~~~~l~ni--- 279 (471)
T PRK10640 207 GNRIPVVAVASHDTASAVIA---SPLNDS-RAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNI--- 279 (471)
T ss_pred CCCCCEEEECCCCHHHHHHC---CCCCCC-CCEEEECCEEEEEECCCCCCCCCHHHHEECCCEECCCCCEEEHHHHH---
T ss_conf 36797899827518878742---666789-85798147447850357987458067412340541776346478779---
Q ss_pred CHH-HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCC-CHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 002-388889885288761035566655405733345861110688754221-024589999998511201210688999
Q gi|254781038|r 168 ALG-ECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSF-SGLKTSVQKTICAFDVLEKQDIADICA 245 (363)
Q Consensus 168 a~G-e~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSF-SGLkTav~~~i~~~~~~~~~~~~diaa 245 (363)
.| -.++++.+...+. .-+.+.+.|.... .+.+ +....+-.|-+ .-....+..+.......-...+.+++.
T Consensus 280 -~glWl~~~~~~e~~~~--d~~~l~~~a~~~p--~~~~---li~p~~~~f~~p~~m~~~i~~~~~~tG~~~~~t~g~l~R 351 (471)
T PRK10640 280 -MGLWLLQRVLQERQIT--DLPALIAQTQALP--ACRF---LINPNDDRFINPDSMCSEIQAACRETAQPVPESDAELAR 351 (471)
T ss_pred -HHHHHHHHHHHHCCCC--CHHHHHHHHHCCC--CCCC---CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf -9999999998851545--0999999864388--7561---106997444483006899999999819988898899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHH
Q ss_conf 9999999999999999999987621445523654133458799999999999868988996287887725899999999
Q gi|254781038|r 246 SFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAWAAL 324 (363)
Q Consensus 246 sfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ag~ 324 (363)
+ |.+.|.-+++..+...++.....++.|.+.||-+.|.++++...+.+ |++++..|.+=+.=-++|.++.+.
T Consensus 352 a----vlEslA~~~r~~l~~le~~tG~~~~~l~vvGGGsrn~ll~Q~~ADi~---g~pVv~g~~EaTalGn~~~q~~a~ 423 (471)
T PRK10640 352 C----IFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQLCADAC---GIRVIAGPVEASTLGNIGIQLMTL 423 (471)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHH---CCCEECCCCHHHHHHHHHHHHHHC
T ss_conf 9----99999999999999999962999676999785766599999989982---996652870587999999999976
No 32
>KOG2517 consensus
Probab=95.43 E-value=0.091 Score=32.30 Aligned_cols=74 Identities=14% Similarity=0.209 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHH
Q ss_conf 06889999999999999999999999987621445523654133458799999999999868988996287887725899
Q gi|254781038|r 239 DIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVM 318 (363)
Q Consensus 239 ~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaM 318 (363)
.+.+||.+ +.+-+.-.++.-++..+....+.+++|-++||.+.|..|.+...+.. |+++..|.--=++==||+
T Consensus 384 s~~hia~A----~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~---g~pv~~p~~~e~~~~GaA 456 (516)
T KOG2517 384 SKEHLARA----ALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL---GLPVVRPQDVEAVALGAA 456 (516)
T ss_pred CHHHHHHH----HHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHH---CCCCCCCCCHHHHHHHHH
T ss_conf 78999999----99999988999999998755778641453464214899999999986---885004653348999999
Q ss_pred H
Q ss_conf 9
Q gi|254781038|r 319 I 319 (363)
Q Consensus 319 I 319 (363)
+
T Consensus 457 ~ 457 (516)
T KOG2517 457 M 457 (516)
T ss_pred H
T ss_conf 9
No 33
>KOG2201 consensus
Probab=95.24 E-value=0.29 Score=28.78 Aligned_cols=135 Identities=24% Similarity=0.258 Sum_probs=77.2
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHCCCCC--CHHH---HHHHHHHHCCCCCCCCCCHH
Q ss_conf 998439997068747999837564300022336300238888988528876--1035---56665540573334586111
Q gi|254781038|r 134 AFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAKSLGLPY--PGGV---EIEKAALMGDGKRFKFPCPL 208 (363)
Q Consensus 134 ~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~y--PgGp---~ie~~A~~g~~~~~~~P~p~ 208 (363)
.||||-+-+--|-+ |+.|.+..+|+.+|.|- +| -+-.+||.- -|-. ++=.+|.+||...+..-.-=
T Consensus 173 ~yPyLLVNIGSGVS-IlkV~~~~~feRvgGsS---lG-----GGTf~GL~~LLTg~~sfdE~LelA~~Gd~~~vD~LV~D 243 (371)
T KOG2201 173 PYPYLLVNIGSGVS-ILKVDGPDNFERVGGSS---LG-----GGTFLGLGSLLTGCKSFDELLELASRGDNRNVDMLVRD 243 (371)
T ss_pred CCCEEEEECCCCEE-EEEEECCCCEEEECCCC---CC-----CCCHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 77659997078728-99983698635703656---67-----71155567671377779999998745897102011001
Q ss_pred CCCCCCCCCCCHHHH-----HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHH
Q ss_conf 068875422102458-----999999851120121068899999999999999999999999876214455236541334
Q gi|254781038|r 209 VQGTLCDFSFSGLKT-----SVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGV 283 (363)
Q Consensus 209 ~~~~~~dFSFSGLkT-----av~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGV 283 (363)
.-+.+ +|==||+. ++-+...+. +..+..+.|+|.|.-.+|.+-+-.-... .+...++++++++|=-
T Consensus 244 IYGg~--y~~fGL~~~~iASSFGk~~~~e-K~~~~s~eDia~SlL~mIsnNIGqiAyl------~A~~~ni~rV~FgG~f 314 (371)
T KOG2201 244 IYGGD--YSRFGLKGDLIASSFGKVIRKE-KELSVSKEDIARSLLRMISNNIGQIAYL------CALNENIKRVYFGGFF 314 (371)
T ss_pred CCCCC--HHHCCCCHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHH------HHHHHCCCEEEEEEEE
T ss_conf 12760--8662997557788777775324-1000385789999999997218999999------9887276379994268
Q ss_pred HHH
Q ss_conf 587
Q gi|254781038|r 284 ASN 286 (363)
Q Consensus 284 aaN 286 (363)
--|
T Consensus 315 iR~ 317 (371)
T KOG2201 315 IRG 317 (371)
T ss_pred EEC
T ss_conf 744
No 34
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=94.91 E-value=0.34 Score=28.35 Aligned_cols=143 Identities=21% Similarity=0.243 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHC---CC-----CCCCCCEEEECCCCCHHHHHHHHHHHHHHHH-HHHCCCCCCCHHHHHHHHCC
Q ss_conf 999996999999999983---89-----8224536874066430125677999999988-75148643330367765301
Q gi|254781038|r 57 RAHVDVLDILIKQTLLRA---NM-----QISDMDSIAVTAGPGLMGGLIVGLMTAKAIS-YVSHKPFYAINHLEGHILTA 127 (363)
Q Consensus 57 ~~H~~~l~~li~~~l~~a---~~-----~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la-~~~~~Pli~VnH~~aH~~~~ 127 (363)
.+|..+++..++++++.+ .+ .+..+|.|-|+ ||.|+=.+|. +.|.+. ...++|++-+. ++-+ |
T Consensus 2 ~~~~~~~~~q~~ea~~~~~~~~~~~~~~~~~~~~~Ivi~---GmGGS~i~Gd-v~~~l~~~~~~iPv~v~~---~y~l-P 73 (328)
T PRK08674 2 LEDYLNWPKQFEEAWEFAYRYVLEGIEVEIEPYDNIVIS---GMGGSGIGGD-LLRSLLLDEWKKPVFVVR---DYFL-P 73 (328)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEE---ECCHHHHHHH-HHHHHHHCCCCCCEEEEC---CCCC-C
T ss_conf 168885799999999778752644311014765729999---5756489999-999998447998679855---8879-9
Q ss_pred CCCCCCCCCCEEEEEE-CCCEEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 3225679984399970-687479998375643000223363002388889885288761035566655405733345861
Q gi|254781038|r 128 RLTDDIAFPYLVLLVS-GGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPC 206 (363)
Q Consensus 128 ~l~~~~~~PfL~LlvS-GGhT~l~~~~~~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~ 206 (363)
.+.++ --|++-+| =|+|+ +|+ .++=+|..|-|+.+++. .||. ++++|++.+...+.+|.
T Consensus 74 ~~v~~---~tLVIavSySGnTe--------------ETL-~a~~~A~~rga~vi~It-sGG~-L~~~a~~~~~~~i~vp~ 133 (328)
T PRK08674 74 AFVDR---KTLVIAVSYSGNTE--------------ETL-SAVEQAKKRGAKIIAIT-SGGK-LAEMAKEKGVPVIKIPG 133 (328)
T ss_pred CCCCC---CCEEEEECCCCCCH--------------HHH-HHHHHHHHCCCCEEEEE-CCCC-HHHHHHHCCCCEEEECC
T ss_conf 86588---85799982899977--------------999-99999997599589994-8970-67899877998894269
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1106887542210245899999985
Q gi|254781038|r 207 PLVQGTLCDFSFSGLKTSVQKTICA 231 (363)
Q Consensus 207 p~~~~~~~dFSFSGLkTav~~~i~~ 231 (363)
.+..+ . +|--+-+.++..+++
T Consensus 134 g~~pR--a--a~~~~~~~ll~~l~~ 154 (328)
T PRK08674 134 GYQPR--A--AFGYLFTPLLNILEK 154 (328)
T ss_pred CCCHH--H--HHHHHHHHHHHHHHH
T ss_conf 86469--9--999999999999998
No 35
>PRK04123 ribulokinase; Provisional
Probab=94.77 E-value=0.19 Score=30.01 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=51.6
Q ss_pred CCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCC------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 88468875026022077887338888418988731133------462121871455999999996999999999983898
Q gi|254781038|r 4 IKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQI------DQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQ 77 (363)
Q Consensus 4 ~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~------~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~ 77 (363)
|.+++||||--.--+=+++++. .+|++++.....+. ..+.+-|.+-+ -....-+.+...+++++++++++
T Consensus 1 Mm~Y~lgID~GTts~Ka~l~D~--~~G~~~a~~~~~yp~~~~~~~~~p~~gw~Eq--dp~~~w~a~~~~i~~~~~~~~~~ 76 (542)
T PRK04123 1 MMAYAIGLDFGTDSVRALLVDC--ATGEEIATSVEEYPRWVKGLYLDLPNNQFLQ--HPLDYIESLEEAVKAVLAESGVD 76 (542)
T ss_pred CCCEEEEEEECCCCEEEEEEEC--CCCCEEEEEEEECCCCCCCCCCCCCCCCEEE--CHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9857999971661127789988--9996999998623554455545799893678--99999999999999999975999
Q ss_pred CCCCCEEEECC
Q ss_conf 22453687406
Q gi|254781038|r 78 ISDMDSIAVTA 88 (363)
Q Consensus 78 ~~~id~Iavt~ 88 (363)
..+|-+|++|.
T Consensus 77 ~~~I~aI~vs~ 87 (542)
T PRK04123 77 PADVVGIGVDF 87 (542)
T ss_pred HHHEEEEEECC
T ss_conf 78968999817
No 36
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.61 E-value=0.3 Score=28.70 Aligned_cols=76 Identities=20% Similarity=0.150 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECC-HHHC-CCHHHHHHHHH
Q ss_conf 999999999999999999998762144552365413345879999999999986898899628-7887-72589999999
Q gi|254781038|r 246 SFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPP-ARLC-TDNAVMIAWAA 323 (363)
Q Consensus 246 sfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~-~~~c-tDNAaMIA~ag 323 (363)
.+..+++|-+.-.+...++.+++......+.+.++||-+-|.+.++.+.+.+ |.++..|+ .+-+ .=+|+|.++++
T Consensus 374 ~l~ravlEgva~~l~~~~~~l~~~~g~~~~~i~~~GGgars~~w~Qi~Ad~~---g~~v~~~~~~e~~a~g~A~~~~~~~ 450 (502)
T COG1070 374 HLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGGARSPLWLQILADAL---GLPVVVPEVEEAGALGGAALAAAAL 450 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH---CCCEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999852999777999776315799999999986---8966724751067999999999970
Q ss_pred H
Q ss_conf 9
Q gi|254781038|r 324 L 324 (363)
Q Consensus 324 ~ 324 (363)
.
T Consensus 451 ~ 451 (502)
T COG1070 451 G 451 (502)
T ss_pred C
T ss_conf 6
No 37
>pfam02782 FGGY_C FGGY family of carbohydrate kinases, C-terminal domain. This domain adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain.
Probab=94.48 E-value=0.29 Score=28.78 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCH-HHCCCH
Q ss_conf 2106889999999999999999999999987621445523654133458799999999999868988996287-887725
Q gi|254781038|r 237 KQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPA-RLCTDN 315 (363)
Q Consensus 237 ~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~-~~ctDN 315 (363)
..++.++..++.+.++-.+..-++ ..+. ....++.+.++||.+.|..+++.+.+.+ |.++..|.. +-+.=-
T Consensus 113 ~~~~~~~~ravlEgia~~~~~~~~----~l~~-~g~~~~~i~~~GG~sks~~~~Qi~Advl---g~~V~~~~~~e~~alG 184 (193)
T pfam02782 113 PTTLANLYRAILEGLALQLRQILE----ALAE-LGAPIDRIIASGGGSRNPLLLQLLADAL---GRPVEVPEPAEATALG 184 (193)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH----HHHH-HCCCCCEEEEECCCCCCHHHHHHHHHHH---CCCEEECCCCCHHHHH
T ss_conf 027999999999999999999999----9997-2898641587576301789999999996---9955817997368999
Q ss_pred HHHHHHH
Q ss_conf 8999999
Q gi|254781038|r 316 AVMIAWA 322 (363)
Q Consensus 316 AaMIA~a 322 (363)
|||+|..
T Consensus 185 aA~lA~~ 191 (193)
T pfam02782 185 AALLAAV 191 (193)
T ss_pred HHHHHHH
T ss_conf 9999973
No 38
>TIGR00555 panK_eukar pantothenate kinase; InterPro: IPR004567 Pantothenate kinase (2.7.1.33 from EC) catalyses the conversion of CAATP and pantothenateto to ADP and D-4'-phosphopantothenate, in the key regulatory step in the biosynthesis of coenzyme A (CoA) . This group describes a eukaryotic form of pantothenate kinase, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from eubacterial PanK and shows little sequence similarity , .; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process.
Probab=94.36 E-value=0.48 Score=27.30 Aligned_cols=205 Identities=20% Similarity=0.180 Sum_probs=129.7
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHCCCC------C--------------------
Q ss_conf 224536874066430125677999999988751-4864333036776530132------2--------------------
Q gi|254781038|r 78 ISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVS-HKPFYAINHLEGHILTARL------T-------------------- 130 (363)
Q Consensus 78 ~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~-~~Pli~VnH~~aH~~~~~l------~-------------------- 130 (363)
-.+++.|+.|=|=- ..++.-+...+ +|++-..+=|+|-+-=..+ .
T Consensus 100 ~~~~~~~~~TGG~A--------~~~~~~~~~~~P~I~l~~~~E~~a~~~G~~~lL~~~~~GkPE~FtY~~~~~~~~~~~~ 171 (387)
T TIGR00555 100 SKRITTICATGGGA--------FKFAELIYESLPGIKLDKLDEFDALIQGLNYLLKEEPKGKPEAFTYEDDAKERVKIKK 171 (387)
T ss_pred CCCCCEEEEECCCH--------HHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEECC
T ss_conf 41114789826845--------8899987540688400176888898874354210477996415631069886333326
Q ss_pred ----CCCCCCCEEEEEECCCEEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHCCCCC---CH--HHHHHHHHHHCCCCC
Q ss_conf ----567998439997068747999837564300022336300238888988528876---10--355666554057333
Q gi|254781038|r 131 ----DDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAKSLGLPY---PG--GVEIEKAALMGDGKR 201 (363)
Q Consensus 131 ----~~~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~y---Pg--Gp~ie~~A~~g~~~~ 201 (363)
....+|||-+=|==|.+. +++.+..+|+++|.|==- -+-.+||.+ +. =-++=.+|+.||...
T Consensus 172 ~~~~~~~~~pylLvNiGtG~Si-~~v~~~~~y~RvgGts~G--------GGt~~GLg~LLT~~~~f~ell~mA~~GD~~~ 242 (387)
T TIGR00555 172 SGIAADDIYPYLLVNIGTGVSI-LYVDGDDNYERVGGTSLG--------GGTFLGLGKLLTKIQSFDELLEMAQHGDRTN 242 (387)
T ss_pred CCCCCCCCCCEEEEEECCCEEE-EEEECCCCEEEEEEEECH--------HHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC
T ss_conf 8850006787089961655378-898289977899864232--------5899999975368878899999986488754
Q ss_pred CCCCCHHCCCCCCCCCCCHHHHHHH-----HHHH------------------HH-----CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 4586111068875422102458999-----9998------------------51-----120121068899999999999
Q gi|254781038|r 202 FKFPCPLVQGTLCDFSFSGLKTSVQ-----KTIC------------------AF-----DVLEKQDIADICASFQVTVVR 253 (363)
Q Consensus 202 ~~~P~p~~~~~~~dFSFSGLkTav~-----~~i~------------------~~-----~~~~~~~~~diaasfQ~~i~~ 253 (363)
+++-.-=.=+ +-|.+=+||+..+. +.++ .. ...+.-..+|+|+|.+..|.+
T Consensus 243 ~D~lV~DIYg-Ggdy~~~gl~~~l~AssFGk~~~nr~tsnkslennenklysshe~~e~~~~~~~~~eD~~~s~l~~ign 321 (387)
T TIGR00555 243 VDLLVGDIYG-GGDYSEIGLKGSLIASSFGKVLSNRMTSNKSLENNENKLYSSHEFIEKELDQSFKPEDIAASLLGLIGN 321 (387)
T ss_pred CCCEECCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 3635412056-688877858611578888999864322100012100011000000014445457818999999888867
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHH-HHHHHHHHHHHHHHCC---CEEEE
Q ss_conf 99999999999987621445523654133458-7999999999998689---88996
Q gi|254781038|r 254 ILQARLKQGFLLFRKAFPHKQAVLVVSGGVAS-NHFIRASLIDLCVLHG---FRFVA 306 (363)
Q Consensus 254 ~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaa-N~~LR~~l~~~~~~~~---~~~~~ 306 (363)
.+..-.... +...+++++|+.|.--. |..+|+.|.....-++ ++.+|
T Consensus 322 nIg~iA~~~------A~~~n~~~I~FiG~~~~~n~~~~~~~~~a~~~~skG~~~A~F 372 (387)
T TIGR00555 322 NIGQIAYLA------ALRYNIKRIVFIGSFLRNNQLLMRVLSYATNFWSKGEKKALF 372 (387)
T ss_pred HHHHHHHHH------HHHCCCCEEEEECCCEECCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 899999998------887398569996230004467899999999743787511467
No 39
>pfam00370 FGGY_N FGGY family of carbohydrate kinases, N-terminal domain. This domain adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain.
Probab=94.36 E-value=0.28 Score=28.97 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=53.9
Q ss_pred EEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 68875026022077887338888418988731133462121871455999999996999999999983898224536874
Q gi|254781038|r 7 TVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAV 86 (363)
Q Consensus 7 ~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iav 86 (363)
++||||-..--+-++++ |.++++++.........+..-|.+... .....+.+...+.++++++++...+|.+|++
T Consensus 1 y~lgIDiGTt~iKa~l~---d~~g~~i~~~~~~~~~~~~~~g~~eqd--p~~~~~~~~~~~~~~~~~~~~~~~~i~aI~i 75 (245)
T pfam00370 1 YVLGIDCGTTSTKAIVF---NKQGKVVASASAPYALISPKPGWAEQD--PEEIWQALAQAIRKILQQSGISPKQIKGIGI 75 (245)
T ss_pred CEEEEEHHHCCEEEEEE---CCCCCEEEEEEEECCCCCCCCCEEEEC--HHHHHHHHHHHHHHHHHHCCCCHHHEEEEEE
T ss_conf 99999803002100078---599999999998577215899907999--9999999999999999873999789469987
Q ss_pred CC
Q ss_conf 06
Q gi|254781038|r 87 TA 88 (363)
Q Consensus 87 t~ 88 (363)
|.
T Consensus 76 s~ 77 (245)
T pfam00370 76 SG 77 (245)
T ss_pred EC
T ss_conf 34
No 40
>PRK00047 glpK glycerol kinase; Provisional
Probab=93.95 E-value=0.57 Score=26.77 Aligned_cols=136 Identities=15% Similarity=0.133 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC--CCCCCCCHHCCCC-------CCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 0238888988528876103556665540573--3345861110688-------754221024589999998511201210
Q gi|254781038|r 169 LGECFDKIAKSLGLPYPGGVEIEKAALMGDG--KRFKFPCPLVQGT-------LCDFSFSGLKTSVQKTICAFDVLEKQD 239 (363)
Q Consensus 169 ~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~--~~~~~P~p~~~~~-------~~dFSFSGLkTav~~~i~~~~~~~~~~ 239 (363)
.|.+++=.-..+++-.. ....|.+++.... .-+-+|. ..+. +..=+|-||. ..-.
T Consensus 310 ~G~~l~W~r~~l~~~~~-~~~~e~~a~~~~~~~gl~~lP~--~~G~~~P~~d~~arG~~~GL~-------------~~~t 373 (498)
T PRK00047 310 AGSAIQWLRDGLKIIKD-ASDSEYLARKVEDNDGVYVVPA--FTGLGAPYWDSYARGAIFGLT-------------RGTT 373 (498)
T ss_pred HHHHHHHHHHHHCCCCC-HHHHHHHHHCCCCCCCCEEECC--CCCCCCCCCCCCHHHHCCCCC-------------CCCC
T ss_conf 54799999988475677-7889999854888788465045--677798666845355113888-------------7679
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCH-HHCCCHHHH
Q ss_conf 6889999999999999999999999987621445523654133458799999999999868988996287-887725899
Q gi|254781038|r 240 IADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPA-RLCTDNAVM 318 (363)
Q Consensus 240 ~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~-~~ctDNAaM 318 (363)
+.++..+..+.+.=. ++..++..++.....++.+.++||.+.|..+.+.+.+++ |.++..|.. +-..--|||
T Consensus 374 ~~~l~RAvlEGiaf~----~r~~~e~l~~~~G~~~~~i~~~GGga~s~lw~Qi~ADvl---g~pV~~~~~~e~~alGaAi 446 (498)
T PRK00047 374 KEHIIRATLESIAYQ----TRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADIL---GVDVERPVVAETTALGAAY 446 (498)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHCCCCCEEEEECCCHHCHHHHHHHHHHH---CCEEEECCCCCCHHHHHHH
T ss_conf 899998999999999----999999999862989677999668034789999999976---9848946888617999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254781038|r 319 IAWAALERM 327 (363)
Q Consensus 319 IA~ag~~~~ 327 (363)
+|..|.-.|
T Consensus 447 lAava~G~~ 455 (498)
T PRK00047 447 LAGLAVGFW 455 (498)
T ss_pred HHHHHCCCC
T ss_conf 999880877
No 41
>PRK10331 L-fuculokinase; Provisional
Probab=93.81 E-value=0.61 Score=26.58 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHH-HCCCHHH
Q ss_conf 068899999999999999999999999876214455236541334587999999999998689889962878-8772589
Q gi|254781038|r 239 DIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPAR-LCTDNAV 317 (363)
Q Consensus 239 ~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~-~ctDNAa 317 (363)
++.++..++.+.+.= .++..++..++......+.++++||-+.|..+.+.+.+.+ |.++..|... -..=-||
T Consensus 359 ~~~~l~rA~lEgia~----~~r~~le~l~~~~~~~~~~i~~~GGgs~s~~w~Qi~ADv~---g~pV~~~~~~e~~alGaA 431 (470)
T PRK10331 359 TRGHFYRAALEGLTA----QLKRNLQVLEKIGHFKATELLLVGGGSRNALWNQIKANML---DIPIKVLDDAETTVAGAA 431 (470)
T ss_pred CHHHHHHHHHHHHHH----HHHHHHHHHHHHCCCCCCEEEEECCHHHCHHHHHHHHHHH---CCEEEECCCCCHHHHHHH
T ss_conf 999999999999999----9999999999843999787999787133799999999986---985894798854899999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254781038|r 318 MIAWAALER 326 (363)
Q Consensus 318 MIA~ag~~~ 326 (363)
|+|+.|.-.
T Consensus 432 ~la~~a~G~ 440 (470)
T PRK10331 432 MFGWYGVGE 440 (470)
T ss_pred HHHHHHCCC
T ss_conf 999998298
No 42
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative; InterPro: IPR008275 This domain is found in a set of closely related proteins including the (R)-2-hydroxyglutaryl-CoA dehydratase activase of Acidaminococcus fermentans, in longer proteins from Methanococcus jannaschii and Methanobacterium thermoautotrophicum that share an additonal N-terminal domain, in a protein described as a subunit of the benzoyl-CoA reductase of Rhodopseudomonas palustris, and in two repeats of an uncharacterised protein of Aquifex aeolicus. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. .
Probab=93.03 E-value=0.81 Score=25.74 Aligned_cols=245 Identities=17% Similarity=0.185 Sum_probs=141.6
Q ss_pred EEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 68875026022077887338888418988731133462121871455999999996999999999983898224536874
Q gi|254781038|r 7 TVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAV 86 (363)
Q Consensus 7 ~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iav 86 (363)
+.+|||...-+|...++. ++++++.......+ +.++ .....+.+.++..+....+++.+..
T Consensus 1 ~~~g~d~g~~~~~~~~~~----d~~~~~~~~~~~~~-------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (259)
T TIGR00241 1 LSLGIDSGSTTTKGVLLE----DGKVIGYGWLPTTP-------VLEE--------TAEKALLEALKEAGIGLEPVDGLGA 61 (259)
T ss_pred CCCCCCCCCCHHEEEEEE----CCCEEEEEEEECCC-------CCHH--------HHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 921234552012011111----46021210010233-------1014--------5789999888864112000131011
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCC--CCCEECCCC
Q ss_conf 066430125677999999988751486433303677653013225679984399970687479998375--643000223
Q gi|254781038|r 87 TAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDV--AHYDRLGTT 164 (363)
Q Consensus 87 t~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~--~~~~ilg~T 164 (363)
|---- .. ..+..-.-..++-+.+|-.-+..+. +..+-....+-+.|-.+.++...+. ..--+++..
T Consensus 62 ~gyg~----~~----~~~~~~~d~~~~~~~~~~~g~~~~~----~~~~~~~~~~d~gg~d~~~~~~~~~g~~~~~~~~~~ 129 (259)
T TIGR00241 62 TGYGR----NK----VGEYFFADKIVTELSCHGKGAVYLA----PEARGEATVIDIGGQDSKVIALDDDGKPDDFLLGDK 129 (259)
T ss_pred CCCCC----HH----HHHHHHHHHHHHHHHHHCCCCHHCC----CCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 13420----12----1123321012222322003301001----333453136640777640466405674010000441
Q ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 36300238888988528876103556665540573334586111068875422102458999999851120121068899
Q gi|254781038|r 165 IDDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADIC 244 (363)
Q Consensus 165 ~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~dia 244 (363)
.--+.|..++..++.||+... .+..++..|+.....+ +..-.-|.-+-+-+.. . ......++.
T Consensus 130 c~~~~g~~~~~~~~~l~~~~~---~~~~~~~~g~~~~~~~-----~~~c~~~~~~~~~~~~----~-----~g~~~~~~~ 192 (259)
T TIGR00241 130 CAAGTGRFLEVTARRLGLSVE---ELGSLAEKGAWRKAKL-----SSYCTVFAESELISLL----A-----AGVKPEDIL 192 (259)
T ss_pred CCCCCCHHHHHHHHHHCCCHH---HHHHHHHCCCCHHHHH-----HHHHHHHHHHHHHHHH----H-----CCCCHHHHH
T ss_conf 013430579888998444445---6322332033102443-----2333434356788876----4-----046446789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCH
Q ss_conf 99999999999999999999987621445523654133458799999999999868988996287
Q gi|254781038|r 245 ASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPA 309 (363)
Q Consensus 245 asfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~ 309 (363)
+...+++.+.+.....+-+. -...++..||++-|+.+.+.+++.... .++..||-
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~gg~~~~~~~~~~~~~~~~g--~~~~~p~~ 247 (259)
T TIGR00241 193 AGVYESVAERVAEQQLQRLD--------VEPPIVLTGGVSKNKGLVKALEKELGG--LKVLTPPE 247 (259)
T ss_pred HHHHHHHHHHHHHHHHHHCC--------CCCCEEEECCHHHHHHHHHHHHHHHCC--CCCCCCCC
T ss_conf 99999998878888876301--------235502205246778999999987467--31115752
No 43
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=92.19 E-value=0.87 Score=25.53 Aligned_cols=79 Identities=13% Similarity=0.174 Sum_probs=49.8
Q ss_pred CEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCC-CCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 46887502602207788733888841898873113346-2121-871455999999996999999999983898224536
Q gi|254781038|r 6 KTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQ-HGHY-GGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDS 83 (363)
Q Consensus 6 ~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~-~~~~-GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~ 83 (363)
++|||||--.-.+=++++ |.+|++++.....+... ...+ |.+-.. ...--+.+...++++++++++...+|.+
T Consensus 3 ~Y~lgiD~GTss~Ka~l~---d~~G~~la~~~~~~~~~~~~~~pg~~E~D--~~~~W~~~~~~i~~~~~~a~~~~~~I~a 77 (521)
T PRK10939 3 SYLMALDAGTGSIRAVIF---DLNGNQIAVGQAEWTHLAVPDVPGSMEFD--LEKNWQLACQCIRQALQKANIPASAIAA 77 (521)
T ss_pred CEEEEEECCCCCHHHEEE---ECCCCEEEEEEEECCCCCCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHCCCCHHHEEE
T ss_conf 789999861021002069---89999999998404456789999973009--9999999999999999982999547799
Q ss_pred EEECCC
Q ss_conf 874066
Q gi|254781038|r 84 IAVTAG 89 (363)
Q Consensus 84 Iavt~g 89 (363)
|++|.-
T Consensus 78 I~is~q 83 (521)
T PRK10939 78 VSACSM 83 (521)
T ss_pred EEECCC
T ss_conf 998268
No 44
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=91.02 E-value=1.4 Score=24.19 Aligned_cols=102 Identities=23% Similarity=0.231 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHH
Q ss_conf 06889999999999999999999999987621445523654133458799999999999868988996287887725899
Q gi|254781038|r 239 DIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVM 318 (363)
Q Consensus 239 ~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaM 318 (363)
.+++|+.+.-++++=...+ +..||+ +........|-|-||-+.|.+|.+...+++ ++++.-|...=+| |-.
T Consensus 372 ~~~hi~RA~LEsiayQ~~d-v~~aM~---~d~~~~~~~LrvDGG~s~n~~lmQfqADil---g~~V~Rp~~~EtT--AlG 442 (499)
T COG0554 372 TKAHIARATLESIAYQTRD-VLEAME---KDSGIKLTRLRVDGGASRNNFLMQFQADIL---GVPVERPVVLETT--ALG 442 (499)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHHHHH---HHCCCCCEEEEECCCCCCCHHHHHHHHHHH---CCEEECCCCCHHH--HHH
T ss_conf 9999999999999999999-999998---762788606997576100457899988872---8803614651036--899
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999984999887620023578787577534
Q gi|254781038|r 319 IAWAALERMEAGLPADDLSISPRSRWPLDEKAPSK 353 (363)
Q Consensus 319 IA~ag~~~~~~g~~~~~~~~~~~~rw~ld~~a~~~ 353 (363)
.||++-. ..|+-.+.-++. ..|++|+.-.+.
T Consensus 443 aA~lAGl--a~G~w~~~~el~--~~~~~~~~f~p~ 473 (499)
T COG0554 443 AAYLAGL--AVGFWKDLDELA--ELWPLDKEFEPG 473 (499)
T ss_pred HHHHHHH--HHCCCCCHHHHH--HHHCCCCEECCC
T ss_conf 9999765--627578999998--653215434799
No 45
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=90.75 E-value=1.4 Score=24.03 Aligned_cols=87 Identities=20% Similarity=0.274 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHH
Q ss_conf 88999999999999999999999998762144552365413345879999999999986898899628788772589999
Q gi|254781038|r 241 ADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIA 320 (363)
Q Consensus 241 ~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA 320 (363)
.++|.-|-.+ .+-+.--++.-++.+++ ..+.+++|.++||-.-|..|++.+ +...|..+..|+ +||+.+.+
T Consensus 401 ~~l~~lY~a~-l~a~A~GtR~Iie~~~~-~g~~Id~l~~sGG~~KN~llmql~---aDvtg~~v~i~~----s~~a~llG 471 (544)
T COG1069 401 ESLALLYRAL-LEATAFGTRAIIETFED-QGIAIDTLFASGGIRKNPLLMQLY---ADVTGRPVVIPA----SDQAVLLG 471 (544)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCHHHHHHH---HHHCCCEEEEEC----CCCHHHHH
T ss_conf 7789999999-99998669999999997-697014788717732389999998---774097578526----64202567
Q ss_pred HHHHHHHHCCCCCCCCC
Q ss_conf 99999998499988762
Q gi|254781038|r 321 WAALERMEAGLPADDLS 337 (363)
Q Consensus 321 ~ag~~~~~~g~~~~~~~ 337 (363)
.+..--..+|. .+++.
T Consensus 472 sAm~~avAag~-~~dl~ 487 (544)
T COG1069 472 AAMFAAVAAGV-HPDLP 487 (544)
T ss_pred HHHHHHHHCCC-CCCHH
T ss_conf 89999987055-74469
No 46
>PRK08313 acetyl-CoA acetyltransferase; Provisional
Probab=90.57 E-value=0.43 Score=27.60 Aligned_cols=60 Identities=23% Similarity=0.442 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHH-HHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 99969999999999838982245368740664301256-77999999988751486433303
Q gi|254781038|r 59 HVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGL-IVGLMTAKAISYVSHKPFYAINH 119 (363)
Q Consensus 59 H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L-~vG~~~Ak~la~~~~~Pli~VnH 119 (363)
-.+.....+.++|..++++..|||.+.++..|+.+.+. ..+...+..|.+ .++|.+.|+.
T Consensus 25 ~~~L~~eA~~~Al~DAGl~~~dID~~~~g~~~~~~~g~~~~~~~~~~~lG~-~~~p~~~v~~ 85 (391)
T PRK08313 25 MAGLVREAIDRALADAGLTFDDIDAVVVGKAPDFFEGVMMPELFLADAIGA-TGKPLIRVHT 85 (391)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCCHHHHHHHHHCC-CCCCEEEEEC
T ss_conf 999999999999997499989989999976576455543557899997078-7884378825
No 47
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=88.99 E-value=2 Score=23.10 Aligned_cols=98 Identities=10% Similarity=0.176 Sum_probs=47.2
Q ss_pred EEEEECCCHHHEEEEEECCCCCCEEEEE-EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 8875026022077887338888418988-731133462121871455999999996999999999983898224536874
Q gi|254781038|r 8 VIGIETSCDETAVAVVRRKDSHGEILAE-AVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAV 86 (363)
Q Consensus 8 ILgIETScd~tsvaiv~~~~~~~~il~~-~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iav 86 (363)
|||||-+-..|+.|+++.+++..+++.. .+.+..+.. .. .-...|-.-+++.+++-+.+.--|.-+-+
T Consensus 2 ILGIDPGl~~~G~aiie~~~~~~~~l~~g~I~t~~~~~---------~~--~RL~~I~~~l~~li~~~~P~~vaiE~~f~ 70 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGRKLIYLASGVIRTSSDAP---------LP--SRLKTIYDGLNEVIDQFQPDVVAIERVFF 70 (154)
T ss_pred EEEECCCCCCCEEEEEEEECCEEEEEEEEEEECCCCCC---------HH--HHHHHHHHHHHHHHHHCCCCEEEEEHHHH
T ss_conf 69987566871599999579978999988896699999---------89--99999999999999834997898654656
Q ss_pred CCCCCHHHHHHHHHHHHH--HHHHHHCCCCCCCH
Q ss_conf 066430125677999999--98875148643330
Q gi|254781038|r 87 TAGPGLMGGLIVGLMTAK--AISYVSHKPFYAIN 118 (363)
Q Consensus 87 t~gPG~~~~L~vG~~~Ak--~la~~~~~Pli~Vn 118 (363)
... .-+.+.+|..-+- ..+...++|++...
T Consensus 71 ~~n--~~tal~lg~arGvi~~~~~~~~i~v~ey~ 102 (154)
T cd00529 71 AKN--PDSALKLGQARGALILALANRNLPVFEYT 102 (154)
T ss_pred HCC--HHHHHHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 018--88899999999999999998179861688
No 48
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=88.81 E-value=0.37 Score=28.10 Aligned_cols=122 Identities=20% Similarity=0.107 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHH----HHHHHHHHHCCCCCCC--HHHHHHHHC-----C
Q ss_conf 9996999999999983898224536874066430125677999----9999887514864333--036776530-----1
Q gi|254781038|r 59 HVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLM----TAKAISYVSHKPFYAI--NHLEGHILT-----A 127 (363)
Q Consensus 59 H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~----~Ak~la~~~~~Pli~V--nH~~aH~~~-----~ 127 (363)
-.+.+-.+|++..++|+++.+|||-=||= .||-.+=-. .+..||-..+.=++.. +|+|+-+.. .
T Consensus 64 D~~~i~~~i~~qy~~Agi~p~dI~tGAVI-----ITGEtaRk~NA~~i~~~ls~~aGdFVvATAGp~LEsiiAg~GsGA~ 138 (471)
T PRK10719 64 DEAAIKELIEEQYQAAGIAPESIDSGAVI-----ITGETARKENARPVVMALSGSAGDFVVATAGPDLESIIAGKGAGAQ 138 (471)
T ss_pred CHHHHHHHHHHHHHHCCCCHHHCCCCCEE-----EECHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCHH
T ss_conf 79999999999999849998887634099-----9645552434999999988756977997158978888741575576
Q ss_pred CCCCCCCCCCEEEEEECCCEEEEEECCCCC-----CEE---CCCCC-C----CCHHHHHHHHHHHCCCCCC
Q ss_conf 322567998439997068747999837564-----300---02233-6----3002388889885288761
Q gi|254781038|r 128 RLTDDIAFPYLVLLVSGGHTQILLVRDVAH-----YDR---LGTTI-D----DALGECFDKIAKSLGLPYP 185 (363)
Q Consensus 128 ~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~-----~~i---lg~T~-D----da~Ge~~DK~ar~Lgl~yP 185 (363)
.++.+-.-+.+.+=+-||+|-+.++++-.- +.| |-++- | .-+-+..-++++.+|++.-
T Consensus 139 ~~S~~~~~~VlNiDIGGGTtn~Alf~~G~v~~t~cl~IGGRLi~~d~~g~rI~~i~~~~~~~~~~~g~~~~ 209 (471)
T PRK10719 139 TLSKERHCRVLNIDIGGGTSNYALFDAGEVIDTACLNVGGRLLETDPQGRRVVYISPPGQMIIDELGGAGT 209 (471)
T ss_pred HHHHCCCCEEEEEEECCCCEEEEEEECCEEEEEEEEEECCEEEEECCCCCEEEEECHHHHHHHHHCCCCCC
T ss_conf 75233487389988668830589984888988775703446999869985699988689999997599875
No 49
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=86.16 E-value=2.8 Score=21.99 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=23.7
Q ss_pred CEEEEEECCCHHHEEEEEECCCCCCEEEEE
Q ss_conf 468875026022077887338888418988
Q gi|254781038|r 6 KTVIGIETSCDETAVAVVRRKDSHGEILAE 35 (363)
Q Consensus 6 ~~ILgIETScd~tsvaiv~~~~~~~~il~~ 35 (363)
|.|||||-+-..|+.++++.++++.+.+..
T Consensus 2 MrILGIDPGl~~tG~gvie~~~~~~~~i~~ 31 (169)
T PRK00039 2 MRILGIDPGLRRTGYGVIEVEGRKLSYVAS 31 (169)
T ss_pred CEEEEECCCCCCEEEEEEEEECCEEEEEEE
T ss_conf 589998836686089999976996899998
No 50
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=86.00 E-value=2.9 Score=21.94 Aligned_cols=141 Identities=16% Similarity=0.112 Sum_probs=79.0
Q ss_pred CCCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 88846887502602207788733888841898873113346212187145599999999699999999998389822453
Q gi|254781038|r 3 KIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMD 82 (363)
Q Consensus 3 ~~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id 82 (363)
.+.+++||||-=--. +.|++. +.+++|++.-.. -..-+.-+-+|.|. +|+...|.+++.++++++.+|+
T Consensus 2 ~~~~~~lGVDGGGTk-t~a~l~--~~~g~vlg~g~s----GpAN~~~~~~e~A~----~ni~~ai~~A~~~aG~~~~~i~ 70 (301)
T COG2971 2 EPMPYFLGVDGGGTK-TRAVLA--DEDGNVLGRGKS----GPANIQLVGKEEAV----RNIKDAIREALDEAGLKPDEIA 70 (301)
T ss_pred CCCCEEEEECCCCCC-EEEEEE--CCCCCEEEEECC----CCCEECCCCHHHHH----HHHHHHHHHHHHHCCCCHHHHC
T ss_conf 875279998568763-689997--589758977516----88521356367899----9999999999876289977817
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEECC
Q ss_conf 68740664301256779999999887514864333036776530132256799843999706874799983756430002
Q gi|254781038|r 83 SIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLG 162 (363)
Q Consensus 83 ~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg 162 (363)
.+....+=.-+..=.......+.+.+++++-+ +|--..-+..+.. ++ -+.++.=||-.+++-..-.+-.+.|
T Consensus 71 ~~~agla~ag~~~~~~~~~~~~~l~~a~~v~v--~~Dg~iAl~ga~~-~~-----~Gii~i~GTGSi~~~~~gg~~~r~G 142 (301)
T COG2971 71 AIVAGLALAGANVEEAREELERLLPFAGKVDV--ENDGLIALRGALG-DD-----DGIIVIAGTGSIGYGRKGGRRERVG 142 (301)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE--ECCHHHHHHHCCC-CC-----CCEEEEECCCEEEEEEECCEEEEEC
T ss_conf 01245503576626778889873686646999--5576999861327-99-----8789992587699997088667756
No 51
>TIGR02628 fuculo_kin_coli L-fuculokinase; InterPro: IPR013450 Proteins in this entry are L-fuculokinases from the clade that includes the Escherichia coli enzyme P11553 from SWISSPROT. They catalyze the second step in fucose catabolism and belong to the FGGY family of carbohydrate kinases. These enzymes are encoded by the kinase (K) gene of the fucose (fuc) operon.; GO: 0008737 L-fuculokinase activity, 0005975 carbohydrate metabolic process.
Probab=85.18 E-value=2.2 Score=22.74 Aligned_cols=78 Identities=22% Similarity=0.204 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999999999876214455236541334587999999999998689889962878877258999999999998
Q gi|254781038|r 249 VTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAWAALERME 328 (363)
Q Consensus 249 ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ag~~~~~ 328 (363)
.+++++|.+++++-+...++--.-+.+.|+++||=+-|. |=+.++.-.-+..++++ -..+=..=-|||=+|+|.=.|.
T Consensus 377 raalegl~~qLk~~l~~L~~~~qf~a~~l~~VGGGskN~-LWNQirAn~L~~p~~vv-d~aE~TV~GAAmF~f~GvG~y~ 454 (473)
T TIGR02628 377 RAALEGLAKQLKRRLDVLEQVSQFKAKELVVVGGGSKNV-LWNQIRANALDLPVKVV-DDAEATVLGAAMFAFAGVGIYE 454 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCH-HHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHCCCCCCCC
T ss_conf 999999999987423578776311377568961785211-46786676650870001-2002578999997622464438
No 52
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=84.72 E-value=0.92 Score=25.34 Aligned_cols=112 Identities=23% Similarity=0.265 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEE-CCCEEEEEECCCCCCEECCCCCCCCH
Q ss_conf 30125677999999988751486433303677653013225679984399970-68747999837564300022336300
Q gi|254781038|r 91 GLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVS-GGHTQILLVRDVAHYDRLGTTIDDAL 169 (363)
Q Consensus 91 G~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvS-GGhT~l~~~~~~~~~~ilg~T~Dda~ 169 (363)
||.++=.+|-..+.-+....++|++-+ ..+-+-.++.+ ..|.+.+| =|+|+ ||++ ++
T Consensus 6 GmGGS~i~gd~l~~~~~~~~~vPv~v~---rdy~lP~~v~~----~~lvi~~S~SGnTe--------------Etl~-~~ 63 (119)
T cd05017 6 GMGGSGIGGDLLESLLLDEAKIPVYVV---KDYTLPAFVDR----KTLVIAVSYSGNTE--------------ETLS-AV 63 (119)
T ss_pred ECCHHHHHHHHHHHHHHCCCCCCEEEE---CCCCCCCCCCC----CCEEEEECCCCCCH--------------HHHH-HH
T ss_conf 563888999999999705799887984---89989875587----87899992897968--------------9999-99
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 2388889885288761035566655405733345861110688754221024589999998
Q gi|254781038|r 170 GECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTIC 230 (363)
Q Consensus 170 Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~ 230 (363)
=+|..|-++.+.+. .||+ ++++|++.+-..+.+|..... .++|--+-++++..++
T Consensus 64 ~~a~~~ga~vi~it-sGG~-L~~~a~~~~~p~v~iP~g~~P----R~a~g~~~~~ll~iL~ 118 (119)
T cd05017 64 EQAKERGAKIVAIT-SGGK-LLEMAREHGVPVIIIPKGLQP----RAAFPYLFTALLNILN 118 (119)
T ss_pred HHHHHCCCEEEEEC-CCCH-HHHHHHHCCCCEEECCCCCCC----HHHHHHHHHHHHHHHC
T ss_conf 99998599099984-9955-999998879998987999995----7999999999999853
No 53
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=84.07 E-value=3.5 Score=21.36 Aligned_cols=278 Identities=16% Similarity=0.211 Sum_probs=136.7
Q ss_pred EEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHH----HHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 6887502602207788733888841898873113346212187145599999----999699999999998389822453
Q gi|254781038|r 7 TVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARA----HVDVLDILIKQTLLRANMQISDMD 82 (363)
Q Consensus 7 ~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~----H~~~l~~li~~~l~~a~~~~~~id 82 (363)
-||-|---.-.|-+|+++++ .+|. +.. ..|.. .|+..+. ..+.=-..+.+.+.+.+..++++|
T Consensus 4 riltINPGststKlaVfe~e---k~if-e~t----lrhs~-----eEl~~f~~i~dQ~~fR~~~i~~~i~e~g~~i~~~d 70 (358)
T COG3426 4 RILTINPGSTSTKLAVFEDE---KEIF-EKT----LRHSL-----EELEKFKRIPDQFEFRKDAILEFIDEQGYNISKFD 70 (358)
T ss_pred EEEEECCCCCCCEEEEECCC---HHHH-HHH----HHCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 47985699864157896183---5766-887----64179-----99998863067676799999999997187757740
Q ss_pred EEEECCC---C--C--------HHHHH----------HHHHHHHHHHHHHHCCCCCCC-----------HHHHHHHHCCC
Q ss_conf 6874066---4--3--------01256----------779999999887514864333-----------03677653013
Q gi|254781038|r 83 SIAVTAG---P--G--------LMGGL----------IVGLMTAKAISYVSHKPFYAI-----------NHLEGHILTAR 128 (363)
Q Consensus 83 ~Iavt~g---P--G--------~~~~L----------~vG~~~Ak~la~~~~~Pli~V-----------nH~~aH~~~~~ 128 (363)
+|+---| | | |.--| -.|...|+.+|..+++|.+=| -|+-|+-..+|
T Consensus 71 AvvgRGGLL~pi~gGTY~Vn~~M~~~lk~~~~G~haSnLGaiiA~~ia~~~gvPayIVDPvvVDEm~~~Ar~SG~p~i~R 150 (358)
T COG3426 71 AVVGRGGLLRPIPGGTYVVNEKMLKDLKNGVQGEHASNLGAIIANRIAKALGVPAYIVDPVVVDEMEDVARFSGIPEIER 150 (358)
T ss_pred CEEECCCCCCCCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCEEHHHCCHHHHHCCCCCCHH
T ss_conf 01305764455678506757999999971888755122567999987664099716667500322054551068966205
Q ss_pred CC---------------C--CC---CCCCEEEEEECCCEEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHCCCCC----
Q ss_conf 22---------------5--67---998439997068747999837564300022336300238888988528876----
Q gi|254781038|r 129 LT---------------D--DI---AFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAKSLGLPY---- 184 (363)
Q Consensus 129 l~---------------~--~~---~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~y---- 184 (363)
-+ . .- +..+++-|+-||.|- -+++.++.--.-+++|+- =||
T Consensus 151 kSiFHALN~KAVarr~A~e~gk~yee~n~vVaHmGggiSV--~ah~~GrvIDvnnaldge-------------GPfsper 215 (358)
T COG3426 151 KSIFHALNQKAVARRAAKEVGKRYEEMNIVVAHMGGGISV--GAHKQGRVIDVNNALDGE-------------GPFSPER 215 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEECCCCEEE--EEECCCCEEECCCCCCCC-------------CCCCCCC
T ss_conf 7788886278999999998522545533788860684378--871478578526887899-------------9988232
Q ss_pred ----CHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----10355666554057333458611106887542210245899999985-1120121068899999999999999999
Q gi|254781038|r 185 ----PGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICA-FDVLEKQDIADICASFQVTVVRILQARL 259 (363)
Q Consensus 185 ----PgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~-~~~~~~~~~~diaasfQ~~i~~~L~~k~ 259 (363)
|-|..++. +..+.-..-.+-+-+..+.+ =|++-|-.... -++. ..+.+ +...-+-.+|-.-|..
T Consensus 216 sG~lP~~dlv~l-cfSgk~t~~El~k~i~g~gG-~~aylGT~d~~--~v~~~~~~Gd-~~a~~~~~AmayQVaK------ 284 (358)
T COG3426 216 SGTLPTGDLVRL-CFSGKYTEEELLKKITGKGG-LVAYLGTNDAK--EVERRIEQGD-EKAKLAYEAMAYQVAK------ 284 (358)
T ss_pred CCCCCHHHHHHH-HHCCCCCHHHHHHHHHCCCC-EEEEECCCHHH--HHHHHHHCCC-HHHHHHHHHHHHHHHH------
T ss_conf 789875899999-96573339999998506885-59983464099--9999997131-9999999999999999------
Q ss_pred HHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHH-HHHHHHHHCCC
Q ss_conf 9999998762144552365413345879999999999986898899628788772589999-99999998499
Q gi|254781038|r 260 KQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIA-WAALERMEAGL 331 (363)
Q Consensus 260 ~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA-~ag~~~~~~g~ 331 (363)
.+-.+....+.++..+++.||.|-|...-.++.+..+-..--+++| ..| -|-| ..|-.|-..|.
T Consensus 285 --eIG~~savL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~P-----GE~-EleALA~G~lRVL~Ge 349 (358)
T COG3426 285 --EIGAMSAVLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYP-----GED-ELEALAEGALRVLRGE 349 (358)
T ss_pred --HHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCEEECC-----CCH-HHHHHHHHHHHHHHCC
T ss_conf --9876664307987779971611547999999999886623157617-----806-8999986337886352
No 54
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=84.02 E-value=3.5 Score=21.34 Aligned_cols=67 Identities=24% Similarity=0.253 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHHH
Q ss_conf 99999999999999999999876214455236541334587999999999998689889962878877258999999999
Q gi|254781038|r 246 SFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAWAALE 325 (363)
Q Consensus 246 sfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ag~~ 325 (363)
+-|+++-++..+-++ .++..+|+|=|--+..-||+++.++++..+-.+|+|+- |--|.-++.
T Consensus 68 AS~~Av~e~~~~~L~-----------~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSG-------AiGGlD~l~ 129 (255)
T COG1712 68 ASPEAVREYVPKILK-----------AGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSG-------AIGGLDALA 129 (255)
T ss_pred CCHHHHHHHHHHHHH-----------CCCCEEEEECHHCCCHHHHHHHHHHHHCCCCEEEECCC-------CCHHHHHHH
T ss_conf 788999998699996-----------59988999512206867999999998538947993376-------401278888
Q ss_pred HHHCC
Q ss_conf 99849
Q gi|254781038|r 326 RMEAG 330 (363)
Q Consensus 326 ~~~~g 330 (363)
..+.|
T Consensus 130 aar~g 134 (255)
T COG1712 130 AARVG 134 (255)
T ss_pred HHHCC
T ss_conf 74327
No 55
>TIGR01312 XylB xylulokinase; InterPro: IPR006000 The ability to metabolise xylose, one of the most abundant sugars in nature, is dependent on its conversion to xylulose-5-phosphate, which then enters the non-oxidative pentose phosphate pathway . Xylulose-5-phosphate is produced from xylose by the sequential action of two enzymes; xylose isomerase, which converts xylose to xylulose, and xylulokinase, which subsequently phosphorylates xylulose. This entry represents bacterial xylulokinase. In addition to its role in xylose metabolism this enzyme may also have a biosynthetic role. 1-deoxy-D-xylulose 5-phosphate serves as a precursor for the biosynthesis of the vitamins thiamine and pyridoxal and for the formation of isopentenyl pyrophosphate and dimethylallyl pyrophosphate via the nonmevalonate pathway of terpenoid biosynthesis. Xylulokinase catalyses the phosphorylation of 1-deoxy-D-xylulose at the hydroxy group of C-5 . This reaction therefore constitutes a potential salvage pathway for the generation of 1-deoxy-D-xylulose 5-phosphate from exogenous or endogenous 1-deoxy-D-xylulose as starting material for the biosynthesis of terpenoids, thiamine and pyridoxal. ; GO: 0004856 xylulokinase activity, 0005997 xylulose metabolic process.
Probab=83.78 E-value=3.6 Score=21.27 Aligned_cols=89 Identities=24% Similarity=0.244 Sum_probs=63.5
Q ss_pred CCCCHHH-HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHH
Q ss_conf 2210245-899999985112012106889999999999999999999999987621445523654133458799999999
Q gi|254781038|r 216 FSFSGLK-TSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLI 294 (363)
Q Consensus 216 FSFSGLk-Tav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~ 294 (363)
=||-||. ... .+.|||++.-+-|.=. ++-+++.+++.....+++|.+.||=|-|++=|+.+.
T Consensus 357 Gsf~GL~~~~~-------------~r~~l~RAv~EG~~F~----l~dsl~~~~~~~g~~~~~i~lIGGGakS~~W~Q~~A 419 (494)
T TIGR01312 357 GSFIGLTSANT-------------TRADLTRAVLEGVTFA----LRDSLDILRELNGLPINEIRLIGGGAKSPVWRQILA 419 (494)
T ss_pred CHHEEHHHHHC-------------CHHHHHHHHHHHHHHH----HHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHH
T ss_conf 12400554314-------------8789999999999999----999999999815994005888705644678999999
Q ss_pred HHHHHCCCEEEECC-HH-HCCCHHHHHHHHHH
Q ss_conf 99986898899628-78-87725899999999
Q gi|254781038|r 295 DLCVLHGFRFVAPP-AR-LCTDNAVMIAWAAL 324 (363)
Q Consensus 295 ~~~~~~~~~~~~P~-~~-~ctDNAaMIA~ag~ 324 (363)
++. |.++..|. .+ .-.==|||.|.-|.
T Consensus 420 DI~---g~~v~~~~g~~eg~ALGAA~lA~~~~ 448 (494)
T TIGR01312 420 DIF---GLPVVVPEGGEEGAALGAAILAAWGL 448 (494)
T ss_pred HHH---CCEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf 981---88157516701100179999999848
No 56
>TIGR02845 spore_V_AD stage V sporulation protein AD; InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation ..
Probab=83.78 E-value=3.4 Score=21.46 Aligned_cols=110 Identities=22% Similarity=0.318 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCC--CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC-----HHHHHHHHCCCC
Q ss_conf 99999699999999998389822--45368740664301256779999999887514864333-----036776530132
Q gi|254781038|r 57 RAHVDVLDILIKQTLLRANMQIS--DMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAI-----NHLEGHILTARL 129 (363)
Q Consensus 57 ~~H~~~l~~li~~~l~~a~~~~~--~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~V-----nH~~aH~~~~~l 129 (363)
..|++.+...|+.+|++++++.+ |||.+-.. =|+==..+|-.-|..++||++|. .-||+=++.+.|
T Consensus 48 kAEr~lm~~Av~~aL~Ka~l~~~PP~vD~~LAG-------DLLNQ~~~anFvAR~L~iPflGLygACsTs~E~L~~gA~l 120 (331)
T TIGR02845 48 KAERKLMEDAVNLALKKANLKKDPPDVDFFLAG-------DLLNQIITANFVARELGIPFLGLYGACSTSMETLALGAML 120 (331)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHH-------HHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHH
T ss_conf 999999999999987535871278721112010-------3666789998988745888234021357899999999999
Q ss_pred CC------------------------CCCC-----CCEEEEEECCCEEEEEECCCCCCEE----CCCCCCCCHHHHHH
Q ss_conf 25------------------------6799-----8439997068747999837564300----02233630023888
Q gi|254781038|r 130 TD------------------------DIAF-----PYLVLLVSGGHTQILLVRDVAHYDR----LGTTIDDALGECFD 174 (363)
Q Consensus 130 ~~------------------------~~~~-----PfL~LlvSGGhT~l~~~~~~~~~~i----lg~T~Dda~Ge~~D 174 (363)
.+ +.|| |.=---|-|-=-.| +.+...+.+| +|.-.|--+=+-+|
T Consensus 121 v~GGfAd~vLaAtSSHy~taERQFRYPTEyG~Qkp~tAq~TVTGAGA~~-l~~~~~~~~it~aT~GkV~D~G~~dP~~ 197 (331)
T TIGR02845 121 VDGGFADRVLAATSSHYATAERQFRYPTEYGVQKPPTAQWTVTGAGAVL-LASTGGGPRITSATIGKVVDLGLTDPLD 197 (331)
T ss_pred HHCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHHEEE-ECCCCCCCEEEEEEEEEEEECCCCCCCC
T ss_conf 8320022111121111353221025651256115998861250346486-5447894364145301477123368641
No 57
>PRK07937 lipid-transfer protein; Provisional
Probab=83.49 E-value=1.7 Score=23.45 Aligned_cols=66 Identities=17% Similarity=0.110 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf 996999999999983898224536874066430125677999999988751486433303677653013
Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTAR 128 (363)
Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~ 128 (363)
.+.+...+.++|+.++++..|||.++..... ++.+-. ......+...-.+|.+.++|.++--.++.
T Consensus 25 ~eL~~eA~~~Al~DAGl~~~DId~~~~g~~d-~~~G~~--~~~~~~~~~lg~~p~~~~~~~~~sg~~Al 90 (352)
T PRK07937 25 VEMLMPCFAQLYEELGITKADIGFWCSGSSD-YLAGRA--FSFISAIDSIGAVPPINESHVEMDAAWAL 90 (352)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEECCC-CCCCCC--HHHHHHHHHCCCCCCEEEECEECCHHHHH
T ss_conf 9999999999999849998999789671465-345410--13577776436877453301022299999
No 58
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=82.73 E-value=2.1 Score=22.86 Aligned_cols=58 Identities=19% Similarity=0.298 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHH-HHHHHHHHHHHHCCCCCCCH
Q ss_conf 996999999999983898224536874066430125677-99999998875148643330
Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIV-GLMTAKAISYVSHKPFYAIN 118 (363)
Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~v-G~~~Ak~la~~~~~Pli~Vn 118 (363)
.+.....+.++|+.++++..|||++.++..|..+.+... +...+..+. ...+|.+.|.
T Consensus 31 ~eL~~eA~~~Al~DAGl~~~dID~~~~g~~~~~~~g~~~~~~~~~~~~g-~~~~p~~~v~ 89 (393)
T PRK06065 31 QELAWEAARQALDEAGLELKDIDCVVIGSAPDAFDGVHMKGEYLAHGSG-GIRKPVSRVF 89 (393)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCCHHHHHHHHCC-CCCCCEEEEE
T ss_conf 9999999999999849998998999995567654543203689997547-7788447874
No 59
>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=81.69 E-value=1.3 Score=24.31 Aligned_cols=63 Identities=19% Similarity=0.174 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH----HHCCCCCCCHHHHHHHHCC
Q ss_conf 969999999999838982245368740664301256779999999887----5148643330367765301
Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISY----VSHKPFYAINHLEGHILTA 127 (363)
Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~----~~~~Pli~VnH~~aH~~~~ 127 (363)
+.....++.+|++++++.++||.+.+..-.+... |.+.|+..++ ..++|.+.||..-+==+.+
T Consensus 25 eL~~~ai~~al~~agi~~~~Id~vi~G~~~~~g~----g~n~ar~~~l~ag~~~~vp~~tV~~~CaSG~~A 91 (393)
T cd00826 25 EAGAKAIAAALEPAGVAAGAVEEACLGQVLGAGE----GQNCAQQAAMHAGGLQEAPAIGMNNLCGSGLRA 91 (393)
T ss_pred HHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCC----CCCHHHHHHHHCCCCCCCCEEEECCCCHHHHHH
T ss_conf 9999999999998296989989899992587555----541999999975999899768876847899999
No 60
>TIGR02627 rhamnulo_kin rhamnulokinase; InterPro: IPR013449 Rhamnulokinase (2.7.1.5 from EC) is an enzyme that catalyzes the second step in rhamnose catabolism.; GO: 0008993 rhamnulokinase activity, 0019301 rhamnose catabolic process.
Probab=81.25 E-value=4.4 Score=20.64 Aligned_cols=86 Identities=21% Similarity=0.295 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHH
Q ss_conf 21068899999999999999999999999876214455236541334587999999999998689889962878877258
Q gi|254781038|r 237 KQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNA 316 (363)
Q Consensus 237 ~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNA 316 (363)
.+.++.=.+.+-+|||+.|+---++.+..........+..|=|+||=+-|.+|-....+.| |++++.-|.+ |
T Consensus 357 ~Q~vP~s~aeLArCiFdSLAl~Y~~~~~~l~~l~g~~i~~LhIVGGGs~n~~LNQL~AD~c---Gi~V~AGPvE-----A 428 (460)
T TIGR02627 357 NQPVPESDAELARCIFDSLALLYRQVLLELAELRGKPISQLHIVGGGSQNAFLNQLCADLC---GIEVIAGPVE-----A 428 (460)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHH---CCCEEECCHH-----H
T ss_conf 7889996556888788889999999999987302688551468617514446677888872---8814415336-----7
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999999999849
Q gi|254781038|r 317 VMIAWAALERMEAG 330 (363)
Q Consensus 317 aMIA~ag~~~~~~g 330 (363)
.-||=.+..+..-|
T Consensus 429 s~lGN~~~Qlm~ld 442 (460)
T TIGR02627 429 STLGNIGVQLMALD 442 (460)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 88778999872022
No 61
>pfam02075 RuvC Crossover junction endodeoxyribonuclease RuvC.
Probab=80.72 E-value=4.6 Score=20.52 Aligned_cols=102 Identities=13% Similarity=0.137 Sum_probs=55.0
Q ss_pred EEEEECCCHHHEEEEEECCCCCCEEEEEEEE-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 8875026022077887338888418988731-133462121871455999999996999999999983898224536874
Q gi|254781038|r 8 VIGIETSCDETAVAVVRRKDSHGEILAEAVL-SQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAV 86 (363)
Q Consensus 8 ILgIETScd~tsvaiv~~~~~~~~il~~~~~-sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iav 86 (363)
|||||-+-..|+.|+++..++.-+++..-.+ +..+ | ...| ...|-.-+++.+++-+.+.--|.-+-+
T Consensus 1 ILGIDPGl~~tG~avi~~~~~~~~~v~~G~I~t~~~---------~-~~~R--L~~I~~~l~~ii~~~~P~~~aiE~~F~ 68 (148)
T pfam02075 1 ILGIDPGSRVTGYGVIEHRGRQLSYLTSGVIRTQSD---------P-LPER--LLAIFDAVEEVLDTHQPNAVAIEQVFF 68 (148)
T ss_pred CEEECCCCCCEEEEEEEEECCEEEEEEEEEEECCCC---------C-HHHH--HHHHHHHHHHHHHHCCCCEEEHHHHHH
T ss_conf 988788868607999997598479999515978998---------8-7999--999999999999964998674758777
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 06643012567799999998875148643330367
Q gi|254781038|r 87 TAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLE 121 (363)
Q Consensus 87 t~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~ 121 (363)
+.-|-..-.|.-.-..+-..+...++|++.+.-.+
T Consensus 69 ~~N~~ta~~lgqaRGvill~~~~~~i~v~ey~P~~ 103 (148)
T pfam02075 69 AKNVDSALKLAQARGVAILAAAERGISVFEYTPSQ 103 (148)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_conf 12869999999999999999998079805788899
No 62
>PRK09953 wcaD putative colanic acid biosynthesis protein; Provisional
Probab=80.36 E-value=2.3 Score=22.59 Aligned_cols=72 Identities=24% Similarity=0.275 Sum_probs=49.2
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHH
Q ss_conf 54221024589999998511201210688999999999999999999999998762144552365413345879999999
Q gi|254781038|r 214 CDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASL 293 (363)
Q Consensus 214 ~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l 293 (363)
+.=||||+.|-.+-++ +-.+||.---+.+.+|.-.++... .+.++|||+|-.||.+++
T Consensus 211 lS~S~sGvm~~il~~l-------------l~wafqylnk~Airkk~~~aiv~L---------a~~~V~~V~a~~Yi~~Rl 268 (405)
T PRK09953 211 LSGSFSGVMTFILFYL-------------LEWAFQYLNKEAIKKKLPLALVSL---------AVFLVGVVIAFPYISTRL 268 (405)
T ss_pred EECCCHHHHHHHHHHH-------------HHHHHHHHHHHHHHHCCCHHHHHH---------HHHHHHHEEECHHHHHHH
T ss_conf 5044301899999999-------------999999865888863275699999---------998875305418799887
Q ss_pred HHHHHHC---CCEEEEC
Q ss_conf 9999868---9889962
Q gi|254781038|r 294 IDLCVLH---GFRFVAP 307 (363)
Q Consensus 294 ~~~~~~~---~~~~~~P 307 (363)
.++..+- ++.++.|
T Consensus 269 ~~~~T~GSSs~YRiv~P 285 (405)
T PRK09953 269 GDLGTEGSSSYYRIVGP 285 (405)
T ss_pred HHCCCCCCCCCEEEEEE
T ss_conf 51257787642378730
No 63
>pfam00012 HSP70 Hsp70 protein. Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region.
Probab=80.30 E-value=4.8 Score=20.43 Aligned_cols=162 Identities=17% Similarity=0.237 Sum_probs=82.0
Q ss_pred CCEEEEEECCCEEEEEECC-CCCCEECCCCCCCCH-HHHHHHHHHH-----C----CCCCCHH-HHHHHHHHHC------
Q ss_conf 8439997068747999837-564300022336300-2388889885-----2----8876103-5566655405------
Q gi|254781038|r 136 PYLVLLVSGGHTQILLVRD-VAHYDRLGTTIDDAL-GECFDKIAKS-----L----GLPYPGG-VEIEKAALMG------ 197 (363)
Q Consensus 136 PfL~LlvSGGhT~l~~~~~-~~~~~ilg~T~Dda~-Ge~~DK~ar~-----L----gl~yPgG-p~ie~~A~~g------ 197 (363)
-++.+=+-|||+.+-+++- .+.+++++..-|... |+-||..=.. . ++....- ..+.++-...
T Consensus 187 ~vlV~DlGggt~dvSv~~~~~g~~~Vla~~gd~~LGG~dfD~~l~~~l~~~f~~k~~~d~~~~~~a~~~L~~~aekaK~~ 266 (598)
T pfam00012 187 NVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEEFKKKYGIDLSKDPRALQRLREAAEKAKIE 266 (598)
T ss_pred EEEEEECCCCCEEEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89999889981777777612998999983278875867888999999999874641677332999999999999999997
Q ss_pred ---CCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf ---73334586111068875422102458999999851120121068899999999999999999999999876214455
Q gi|254781038|r 198 ---DGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQ 274 (363)
Q Consensus 198 ---~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~ 274 (363)
+.....++.-.....+.||+++ ...++-.++|..+-..+.+.+ ++++.... .....+
T Consensus 267 LS~~~t~~~~~~~~~~~~~~d~~~~---------------itR~eFE~l~~~l~~r~~~~i----~~~L~~a~-l~~~dI 326 (598)
T pfam00012 267 LSSNQTEINLPFITAMADGKDVSGT---------------LTRAKFEELCADLFERTLEPV----EKALKDAK-LSKSEI 326 (598)
T ss_pred HCCCCCEEEEEEEEECCCCCEEEEE---------------EEHHHHHHHHHHHHHHHHHHH----HHHHHHHC-CCHHHE
T ss_conf 2666633667888714789479999---------------779999999999999999999----87898728-995451
Q ss_pred CEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHH
Q ss_conf 2365413345879999999999986898899628788772589999999
Q gi|254781038|r 275 AVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAWAA 323 (363)
Q Consensus 275 ~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ag 323 (363)
..++++||-+.=..+|+.++++..+. |...+..|-|+=.|.|=
T Consensus 327 d~ViLvGGssRiP~Vq~~l~~~fg~~------~~~~inpdeaVa~GAA~ 369 (598)
T pfam00012 327 DEVVLVGGSTRIPAVQELVKEFFGKE------PSKTVNPDEAVAIGAAV 369 (598)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCC------CCCCCCCCHHHHHHHHH
T ss_conf 25786188656768999999986899------66686853142330899
No 64
>TIGR01141 hisC histidinol-phosphate aminotransferase; InterPro: IPR005861 The biosynthesis of histidine is a central metabolic process in organisms ranging from bacteria to yeast and plants. The seventh step in the synthesis of histidine within eubacteria is carried out by a pyridoxal-5'-phosphate (PLP)-dependent l-histidinol phosphate aminotransferase (HisC, 2.6.1.9 from EC). HisC is a dimeric enzyme with a mass of approximately 80 kDa. Like most PLP-dependent enzymes, each HisC monomer consists of two domains, a larger PLP-binding domain having an alpha/beta/alpha topology, and a smaller domain. An N-terminal arm contributes to the dimerization of the two monomers . ; GO: 0004400 histidinol-phosphate transaminase activity, 0000105 histidine biosynthetic process.
Probab=79.44 E-value=5.1 Score=20.24 Aligned_cols=106 Identities=19% Similarity=0.269 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHH-CCC--CCCCCCCHHCCCCCCCCCCC-HHHHHHHHHHH--HHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 876103556665540-573--33458611106887542210-24589999998--5112012106889999999999999
Q gi|254781038|r 182 LPYPGGVEIEKAALM-GDG--KRFKFPCPLVQGTLCDFSFS-GLKTSVQKTIC--AFDVLEKQDIADICASFQVTVVRIL 255 (363)
Q Consensus 182 l~yPgGp~ie~~A~~-g~~--~~~~~P~p~~~~~~~dFSFS-GLkTav~~~i~--~~~~~~~~~~~diaasfQ~~i~~~L 255 (363)
-||-.|.-||.+|+. |.. +.++| +.+..=|.+| -++-++.+.++ +.....+.+..+
T Consensus 8 ~pY~~GK~iee~ar~~g~~~~~~ikL-----~sNEnP~gp~~~~~~~~~~~l~~a~l~RYPdp~~~~------------- 69 (377)
T TIGR01141 8 SPYQPGKPIEEIARELGGKPAEVIKL-----NSNENPYGPPEKAKEALRAELKEAKLHRYPDPDPAE------------- 69 (377)
T ss_pred CCCCCCCCHHHCCCCCCCCCCCCEEC-----CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHH-------------
T ss_conf 67887785111030137896322141-----367889988889999999998508786798986689-------------
Q ss_pred HHHHHHHHHHHHHHCC--CCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHC
Q ss_conf 9999999999876214--45523654133458799999999999868988996287887
Q gi|254781038|r 256 QARLKQGFLLFRKAFP--HKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLC 312 (363)
Q Consensus 256 ~~k~~~a~~~~~~~~~--~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~c 312 (363)
+++++..+ .. ....+|++ ||..||.-|.--++.+|+.-.-++.+|+|.|.
T Consensus 70 ---L~~~lA~~---~~~~v~~eqi~~-GGnGsDe~I~~l~raf~~PGk~~~l~~~Pty~ 121 (377)
T TIGR01141 70 ---LKQALAKY---LGKKVDPEQILL-GGNGSDEIIDLLIRAFLEPGKDAVLVPPPTYS 121 (377)
T ss_pred ---HHHHHHHH---HCCCCCCCCEEE-ECCCHHHHHHHHHHHHCCCCCCEEEECCCCHH
T ss_conf ---99999998---288987140378-41560689999999852766545776177500
No 65
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=78.85 E-value=5.3 Score=20.13 Aligned_cols=238 Identities=15% Similarity=0.136 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 99999999998389822453687406643012567799999998875148643-33036776530132256799843999
Q gi|254781038|r 63 LDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFY-AINHLEGHILTARLTDDIAFPYLVLL 141 (363)
Q Consensus 63 l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli-~VnH~~aH~~~~~l~~~~~~PfL~Ll 141 (363)
+-.+++++..+.+... .-+.+|. |-+|+...--... .-+...+...+ =+|.-.|=+++..+...-....|++=
T Consensus 86 l~~l~~~~~~~~~~~~---~~~VItV-Pa~f~~~qR~a~~--~Aa~~AGl~~v~li~EPtAAAl~~gl~~~~~~~~lVvD 159 (336)
T PRK13930 86 LRYFIKKARGRSSFGR---PRIVICV-PSGITEVERRAVR--EAAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVD 159 (336)
T ss_pred HHHHHHHHHHHCCCCC---CEEEEEE-CCCCCHHHHHHHH--HHHHHCCCCEEEEECCHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 9999999986458899---8199993-9999999999999--99997699879985526999987189846786179999
Q ss_pred EECCCEEEEEECCC-----CCCEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH-CC--CCCCCCCCHHCCCCC
Q ss_conf 70687479998375-----64300022336300238888988528876103556665540-57--333458611106887
Q gi|254781038|r 142 VSGGHTQILLVRDV-----AHYDRLGTTIDDALGECFDKIAKSLGLPYPGGVEIEKAALM-GD--GKRFKFPCPLVQGTL 213 (363)
Q Consensus 142 vSGGhT~l~~~~~~-----~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~-g~--~~~~~~P~p~~~~~~ 213 (363)
+-||++++-++.-. .+..+=|..+|.++=+. +.+.-++..+ -...|++-.+ +. ......+.. ..+
T Consensus 160 lGGGT~Dvsvl~~~~i~~~~~~~lGG~d~D~~i~~~---i~~~~~~~i~-~~~aE~~K~~l~~~~~~~~~~~~~-v~g-- 232 (336)
T PRK13930 160 IGGGTTEVAVISLGGIVYSESIRVAGDEMDEAIIQY---VRRKYNLLIG-ERTAERIKIEIGSAYPLDEELSME-VRG-- 232 (336)
T ss_pred ECCCCEEEEEEEECCEEEECCCCCCCHHHHHHHHHH---HHHHHCCCCC-HHHHHHHHHHHHHCCCCCCCCCCE-EEC--
T ss_conf 389854677887043477446044626589999999---9986063328-899999999973054454243321-211--
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-C-CEEEEEHHHHHHHHHHH
Q ss_conf 542210245899999985112012106889999999999999999999999987621445-5-23654133458799999
Q gi|254781038|r 214 CDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHK-Q-AVLVVSGGVASNHFIRA 291 (363)
Q Consensus 214 ~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~-~-~~lvv~GGVaaN~~LR~ 291 (363)
.|+. +|+. ..-+.+..++....+..+. -+.+.++++++......... . +.++++||-+-=..||+
T Consensus 233 ~d~~-~g~~-----------~~~~it~~~~~~~i~~~~~-~i~~~i~~~L~~~~~el~~Di~~~gIiLvGGsSriP~i~~ 299 (336)
T PRK13930 233 RDLV-TGLP-----------RTIEISSEEIREALAEPLQ-QIVEAIKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDK 299 (336)
T ss_pred EECC-CCCC-----------EEEEECHHHHHHHHHHHHH-HHHHHHHHHHHCCCHHHCCCCCCCEEEEECCCCCCHHHHH
T ss_conf 0236-7986-----------2377649999999999999-9999899887506723212112683999877455147999
Q ss_pred HHHHHHHHCCCEEE-ECCHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 99999986898899-628788772589999999999984
Q gi|254781038|r 292 SLIDLCVLHGFRFV-APPARLCTDNAVMIAWAALERMEA 329 (363)
Q Consensus 292 ~l~~~~~~~~~~~~-~P~~~~ctDNAaMIA~ag~~~~~~ 329 (363)
++++... .++. -.+|.+|.=.||.|....+..|+.
T Consensus 300 ~l~e~~g---~~v~~~~~P~~aVA~GAAi~~~~~~~~~~ 335 (336)
T PRK13930 300 LLSEETG---LPVHIAEDPLTCVARGTGKALENLDKLRR 335 (336)
T ss_pred HHHHHHC---CCCCCCCCHHHHHHHHHHHHHHCHHHHCC
T ss_conf 9999978---39888988777999999999858786425
No 66
>PRK06157 acetyl-CoA acetyltransferase; Validated
Probab=78.29 E-value=3.7 Score=21.17 Aligned_cols=60 Identities=12% Similarity=0.132 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 9969999999999838982245368740664301256779999999887514864333036776
Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGH 123 (363)
Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH 123 (363)
.+.....+.++|+.++++..|||.+.++........-..+.. ++..++.+-+++...++.
T Consensus 28 ~~L~~eA~~~AL~DAGl~~~dID~~~~g~~~~~~~~~~~~~~----l~~~lg~~~~p~~~v~~~ 87 (400)
T PRK06157 28 EDLMVEAYQEAIADAGIEPKQIEAAWFGTHYDEIGTGKSGTP----LSMALRLPNIPVTRVENF 87 (400)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCHHHHH----HHHHCCCCCCCEEEECCC
T ss_conf 999999999999973999899899989814775445525799----999618998733786477
No 67
>PRK07124 consensus
Probab=77.98 E-value=3.4 Score=21.40 Aligned_cols=80 Identities=21% Similarity=0.282 Sum_probs=48.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 12187145599999999699999999998389822453687406643012567799999998875148643330367765
Q gi|254781038|r 45 GHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHI 124 (363)
Q Consensus 45 ~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~ 124 (363)
+++||.....- =.+.....++++|++++++.++||.|-+..-.+-..+.-++-..+....+..++|.+-||..-+==
T Consensus 15 g~~~G~l~~~~---~~~L~~~ai~~al~~~~i~~~~Id~vi~G~v~~~g~g~n~ar~~al~aGlp~~iP~~tV~~aCaSG 91 (402)
T PRK07124 15 GAFGGSLKSVP---AGELAGVAIKGALEQAKVSPEAIDEVIVGNVVSAGQGMGPGRQAAIFAGIPEEVPAYSLNMVCGSG 91 (402)
T ss_pred CCCCCCCCCCC---HHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEECCHHHHH
T ss_conf 56898778999---999999999999998398989999899993475555667999999976999888569972577899
Q ss_pred HCC
Q ss_conf 301
Q gi|254781038|r 125 LTA 127 (363)
Q Consensus 125 ~~~ 127 (363)
+.+
T Consensus 92 ~~A 94 (402)
T PRK07124 92 MKT 94 (402)
T ss_pred HHH
T ss_conf 999
No 68
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit; InterPro: IPR006274 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents the small subunit of the glutamine-dependent form (6.3.5.5 from EC) of carbamoyl phosphate synthase, CPSase II. The small subunit catalyses the hydrolysis of glutamine to ammonia, which in turn used by the large chain to synthesize carbamoyl phosphate. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (6.3.4.16 from EC). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=77.68 E-value=3.2 Score=21.62 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=41.9
Q ss_pred CCCEEEECCCCCHH-HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf 45368740664301-25677999999988751486433303677653013
Q gi|254781038|r 80 DMDSIAVTAGPGLM-GGLIVGLMTAKAISYVSHKPFYAINHLEGHILTAR 128 (363)
Q Consensus 80 ~id~Iavt~gPG~~-~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~ 128 (363)
..|+|=.|.|||=+ ..+.-.+.+.|.|.-+ .+|+.|| |-||=+.++
T Consensus 237 ~PDGiflSNGPGDPH~~~~~~i~~~~~l~~~-~~P~fGI--CLGHQllAL 283 (383)
T TIGR01368 237 NPDGIFLSNGPGDPHAAVEPAIETVRELLEA-KIPIFGI--CLGHQLLAL 283 (383)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHC-CCCCCCC--CHHHHHHHH
T ss_conf 7888999087988056789999999999844-8971002--666899999
No 69
>PRK06059 lipid-transfer protein; Provisional
Probab=77.64 E-value=2.9 Score=21.95 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEECCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 9996999999999983898224536874066-43012567799999998875148643330
Q gi|254781038|r 59 HVDVLDILIKQTLLRANMQISDMDSIAVTAG-PGLMGGLIVGLMTAKAISYVSHKPFYAIN 118 (363)
Q Consensus 59 H~~~l~~li~~~l~~a~~~~~~id~Iavt~g-PG~~~~L~vG~~~Ak~la~~~~~Pli~Vn 118 (363)
..+.....+.++|..++++..|||++.++.. ++.+++...|..++..|.+ .++|...|+
T Consensus 23 ~~~l~~eA~~~AL~DAGl~~~dVD~v~~~~~~~~~~~~~~~~~~~a~~lGl-~g~p~~~v~ 82 (399)
T PRK06059 23 FTEYGVVAARAALADAGLDWRQVQLVAGADTIRNGYPGFVAGATFAQKLGW-NGVPVTSSY 82 (399)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCCHHHHHHHHCCC-CCCCCCCCC
T ss_conf 899999999999985599989946884303456677753226999997599-886311211
No 70
>PRK00180 acetate kinase; Reviewed
Probab=76.84 E-value=6 Score=19.74 Aligned_cols=79 Identities=15% Similarity=0.309 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHH-HHHHHHH
Q ss_conf 221024589999998511201210688999999999999999999999998762144552365413345879-9999999
Q gi|254781038|r 216 FSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNH-FIRASLI 294 (363)
Q Consensus 216 FSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~-~LR~~l~ 294 (363)
+..||+-+.++...++.+..+ +.+.+| ++..+-++.+.+-.+-... .++..||+.||+.-|+ .+|+++-
T Consensus 274 lG~sG~s~D~R~l~~~~~~gd--~~A~lA-------~d~f~yri~k~IGa~aa~L-GglDaiVFTGGIGEn~~~iR~~v~ 343 (399)
T PRK00180 274 LGLSGVSSDMRDIEAAAEEGD--ERAKLA-------LDVFVYRLAKYIGSYAAAL-GGLDAIVFTAGIGENSALVREKVL 343 (399)
T ss_pred CCCCCCCCCHHHHHHHHHCCC--HHHHHH-------HHHHHHHHHHHHHHHHHHH-CCCCEEEECCCCCCCCHHHHHHHH
T ss_conf 301378887999999987879--989999-------9999999999999999862-899999987844678899999998
Q ss_pred HHHHHCCCEE
Q ss_conf 9998689889
Q gi|254781038|r 295 DLCVLHGFRF 304 (363)
Q Consensus 295 ~~~~~~~~~~ 304 (363)
+-++-.|+++
T Consensus 344 ~~l~~lGi~l 353 (399)
T PRK00180 344 EGLEFLGIEL 353 (399)
T ss_pred HHHHHCCEEE
T ss_conf 5413429277
No 71
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=76.47 E-value=4.5 Score=20.62 Aligned_cols=41 Identities=27% Similarity=0.496 Sum_probs=28.4
Q ss_pred CCEEEEEHHHHHHHHHHH-------------------HHHHHHHHCCCEEEECCHHHCCCH
Q ss_conf 523654133458799999-------------------999999868988996287887725
Q gi|254781038|r 274 QAVLVVSGGVASNHFIRA-------------------SLIDLCVLHGFRFVAPPARLCTDN 315 (363)
Q Consensus 274 ~~~lvv~GGVaaN~~LR~-------------------~l~~~~~~~~~~~~~P~~~~ctDN 315 (363)
...+++ ||+.||.+|.. .+.+.+++++.++++|---.|.+|
T Consensus 214 ~D~iii-GG~mantFL~A~G~~iG~sl~e~~~~~~a~~il~~a~~~~~~I~lP~D~~v~~~ 273 (397)
T cd00318 214 VDYLII-GGGMAFTFLKAQGMDIGKSLFEEDGIELAKSLLEKAKAKGVKIVLPVDVVVADK 273 (397)
T ss_pred CCEEEE-CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEEECC
T ss_conf 788997-609999999976997786556757799999999998754984868756999436
No 72
>PRK06289 acetyl-CoA acetyltransferase; Provisional
Probab=75.91 E-value=5 Score=20.27 Aligned_cols=64 Identities=20% Similarity=0.203 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCC-HHHHH-HHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 99699999999998389822453687406643-01256-779999999887514864333036776
Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMDSIAVTAGPG-LMGGL-IVGLMTAKAISYVSHKPFYAINHLEGH 123 (363)
Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG-~~~~L-~vG~~~Ak~la~~~~~Pli~VnH~~aH 123 (363)
.+.....++++|+.++++.+|||.|.+....+ .+.+- ..|...+....-.+++|.+.|+..-+=
T Consensus 27 ~~L~~eA~~~Al~dAGl~~~dID~v~~G~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~v~~~caS 92 (408)
T PRK06289 27 ADLTREVVDGTLAAAGIDADDIGVVHVGNFFGELFAGQGHLGAMPATVHPALWGTPASRHEAACAS 92 (408)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCHH
T ss_conf 999999999999984999899899999741564344510256678876421258861446352389
No 73
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase; InterPro: IPR006003 The enzymes for catabolism of the pentitols D-arabinitol and ribitol include NAD-dependent pentose dehydrogenase (dalD and rbtD), ATP-dependent pentulose kinases (dalK and rbtK) and a pentose-specific ion symporter (dalT and rbtT). Of the two kinases (19.3 0dentity), DalK (487 aa) belongs to the family of short D-xylulokinases and RbtK (D-ribulokinase; 535 aa) to the family of long kinases . .
Probab=75.88 E-value=6.3 Score=19.57 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEC-C-HHHCCCHHHHHHHHH
Q ss_conf 99999999999876214455236541334587999999999998689889962-8-788772589999999
Q gi|254781038|r 255 LQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAP-P-ARLCTDNAVMIAWAA 323 (363)
Q Consensus 255 L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P-~-~~~ctDNAaMIA~ag 323 (363)
|.-.+++-++......+.-.|+|+++||.+-|..++..+.+.| ++++..| . .+.--=-|||.+..+
T Consensus 450 iaygtRqI~ea~~~~Gr~~~k~i~~sGg~~qnpl~~q~~Ad~C---~~Pvlipr~~~e~Vl~GaA~LGA~A 517 (574)
T TIGR01315 450 IAYGTRQIVEALTAAGRAVIKSILISGGLAQNPLLVQLLADIC---DLPVLIPRDVQEAVLLGAAILGAAA 517 (574)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHC---CCCEECCHHHCHHHHHHHHHHHHHH
T ss_conf 8643889999986268602201134176445257888896341---7873244110205777688888763
No 74
>pfam00871 Acetate_kinase Acetokinase family. This family includes acetate kinase, butyrate kinase and 2-methylpropanoate kinase.
Probab=75.51 E-value=6.5 Score=19.50 Aligned_cols=79 Identities=16% Similarity=0.348 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHH-HHHHHHHH
Q ss_conf 22102458999999851120121068899999999999999999999999876214455236541334587-99999999
Q gi|254781038|r 216 FSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASN-HFIRASLI 294 (363)
Q Consensus 216 FSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN-~~LR~~l~ 294 (363)
...||+-+.++...++.+..+ +.+.+ +++..+.++.+.+-.+-... .++..||+.||++-| ..+|+++-
T Consensus 272 lg~sG~s~D~Rel~~~~~~gd--~~A~l-------A~d~f~yri~k~IGa~~a~L-ggvDaiVFTGGIGEns~~vR~~i~ 341 (387)
T pfam00871 272 LGLSGLSSDLRDVEDAMEEGD--EEAEL-------AYKVYVYRIAKYIGEYSAVL-EGVDAIVFTGGIGENAALVRELVL 341 (387)
T ss_pred EEECCCCCCHHHHHHHHHCCC--HHHHH-------HHHHHHHHHHHHHHHHHHHH-CCCCEEEECCCCCCCCHHHHHHHH
T ss_conf 785178741999999998879--98999-------99999999999999999976-899999988830348899999998
Q ss_pred HHHHHCCCEE
Q ss_conf 9998689889
Q gi|254781038|r 295 DLCVLHGFRF 304 (363)
Q Consensus 295 ~~~~~~~~~~ 304 (363)
+-+.-.|+++
T Consensus 342 ~~l~~lGi~l 351 (387)
T pfam00871 342 KGLEFLGFKI 351 (387)
T ss_pred HCCCCCCCEE
T ss_conf 3054169188
No 75
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=75.46 E-value=5.1 Score=20.20 Aligned_cols=41 Identities=22% Similarity=0.443 Sum_probs=28.9
Q ss_pred CCEEEEEHHHHHHHHHHH-------------------HHHHHHHHCCCEEEECCHHHCCCH
Q ss_conf 523654133458799999-------------------999999868988996287887725
Q gi|254781038|r 274 QAVLVVSGGVASNHFIRA-------------------SLIDLCVLHGFRFVAPPARLCTDN 315 (363)
Q Consensus 274 ~~~lvv~GGVaaN~~LR~-------------------~l~~~~~~~~~~~~~P~~~~ctDN 315 (363)
...+++ ||+.||.+|.. .+.+.+++++.++++|.--.|.++
T Consensus 211 ~D~iii-gG~mantfl~a~G~~IG~sl~E~~~i~~a~~il~~a~~~~~~I~lP~D~~~~~~ 270 (391)
T PRK00073 211 VDKLII-GGGMANTFLKAQGYNVGKSLVEEDLIDTAKELLEKAKEKGVKIPLPVDVVVAKE 270 (391)
T ss_pred CCEEEE-CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEC
T ss_conf 888887-728999999983984786545667899999999998743882766504776202
No 76
>PRK12440 acetate kinase; Reviewed
Probab=75.35 E-value=6.5 Score=19.48 Aligned_cols=52 Identities=17% Similarity=0.335 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHH-HHHHHHHHHHHHCCCE
Q ss_conf 9999999999999998762144552365413345879-9999999999868988
Q gi|254781038|r 251 VVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNH-FIRASLIDLCVLHGFR 303 (363)
Q Consensus 251 i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~-~LR~~l~~~~~~~~~~ 303 (363)
+++..+.++.+.+-.+-.... ++..||+.||+.-|+ .+|+++-+-++-.|++
T Consensus 299 A~d~f~yri~k~IGay~a~Lg-glDalVFTgGIGEns~~iR~~i~~~L~~lGi~ 351 (397)
T PRK12440 299 AFQVFTYRVAKYIASYLAALD-SLDGIIFTGGIGENSLPIRREILKNLKILGFV 351 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCEEEECCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 999999999999999998738-99999985854668899999998532451947
No 77
>KOG4417 consensus
Probab=74.80 E-value=5.2 Score=20.14 Aligned_cols=112 Identities=23% Similarity=0.214 Sum_probs=64.3
Q ss_pred CEEEEEECCCHHH-----EEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 4688750260220-----77887338888418988731133462121871455999999996999999999983898224
Q gi|254781038|r 6 KTVIGIETSCDET-----AVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISD 80 (363)
Q Consensus 6 ~~ILgIETScd~t-----svaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~ 80 (363)
++|-|||||.+.. .+|++-.+=.+-++++..- .....+..| +|---++.-.+.+.++++....+.. .+ .
T Consensus 42 kyV~GiD~Sf~K~~S~~a~~~lv~~~lp~l~~v~~d~-~~~~Le~pY---vPgfLafREa~v~l~~L~~v~~erh-~f-r 115 (261)
T KOG4417 42 KYVAGIDTSFAKLNSDMAYISLVFWTLPDLKHVATDS-DTRMLELPY---VPGFLAFREAEVMLDFLKSVITERH-EF-R 115 (261)
T ss_pred EEEEEECCCHHHCCCCCEEEEEEEEECCCCEEEEEHH-HHHHHCCCC---CCCCEEEEHHHHHHHHHHHCCCCCC-CC-C
T ss_conf 4664200102102798158999998633004642122-466624676---7531021045899999985322357-76-6
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHC
Q ss_conf 5368740664301256779999999887514864333----036776530
Q gi|254781038|r 81 MDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAI----NHLEGHILT 126 (363)
Q Consensus 81 id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~V----nH~~aH~~~ 126 (363)
+|.|-|- |-|-+ -.+|...|--|....++|.+|| ||.-|-+-+
T Consensus 116 ~dvilvD-GnG~l--HprGfGlACHlGvL~~lp~iGVaKNlhH~~gl~~s 162 (261)
T KOG4417 116 PDVILVD-GNGEL--HPRGFGLACHLGVLSGLPSIGVAKNLHHTYGLIGS 162 (261)
T ss_pred CCEEEEC-CCCEE--CCCCCCHHHHHHHHCCCCCCCHHCCHHHHHHCCCC
T ss_conf 6289986-88547--46654431245676189720110002434300120
No 78
>PRK05560 DNA gyrase subunit A; Validated
Probab=74.08 E-value=1.8 Score=23.27 Aligned_cols=95 Identities=17% Similarity=0.243 Sum_probs=67.1
Q ss_pred ECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE----
Q ss_conf 0260220778873388884189887311334621218714--5599999999699999999998389822453687----
Q gi|254781038|r 12 ETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVV--PEVAARAHVDVLDILIKQTLLRANMQISDMDSIA---- 85 (363)
Q Consensus 12 ETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~--P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Ia---- 85 (363)
|+|+||+-|-.-.+ +..+...++-|+-||-+- |..|.|.-.-.|.++.++.|.+ +.-+.+|.+.
T Consensus 83 d~siY~alvrmaQ~--------~~~r~plidg~GNfGsidgd~~AAmRYTE~rl~~~~~~ll~d--i~~~tV~f~~NfD~ 152 (822)
T PRK05560 83 DSAVYDALVRMAQD--------FSLRYPLVDGQGNFGSIDGDPAAAMRYTEARLAKIAHELLRD--IDKETVDFVPNYDG 152 (822)
T ss_pred CHHHHHHHHHHHHH--------HHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCC
T ss_conf 21799999997002--------230473271578888999980066667888879999999851--13065255048898
Q ss_pred ----ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf ----4066430125677999999988751486433
Q gi|254781038|r 86 ----VTAGPGLMGGLIVGLMTAKAISYVSHKPFYA 116 (363)
Q Consensus 86 ----vt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~ 116 (363)
=+.=|..+|.|+|.-+..-+..++.++|=.-
T Consensus 153 s~~EP~vLPa~~PnlLvNGs~GIAVGmATniPpHN 187 (822)
T PRK05560 153 SEQEPTVLPARFPNLLVNGSSGIAVGMATNIPPHN 187 (822)
T ss_pred CCCCCCCCCCCCCHHHCCCCCCCHHHHHCCCCCCC
T ss_conf 76586525656645320577510021105889968
No 79
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=73.40 E-value=7.3 Score=19.16 Aligned_cols=85 Identities=18% Similarity=0.188 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHH-HHHHHHHHHHHHHHHHHCCCCCCCHH--HHHHHHCCC-----CCCC
Q ss_conf 969999999999838982245368740664301-25677999999988751486433303--677653013-----2256
Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMDSIAVTAGPGLM-GGLIVGLMTAKAISYVSHKPFYAINH--LEGHILTAR-----LTDD 132 (363)
Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~-~~L~vG~~~Ak~la~~~~~Pli~VnH--~~aH~~~~~-----l~~~ 132 (363)
+......+++|++++++.+|||.|.+...+|+. |++ ....++.|.+.-++.-+.++. +-|=+.+-. +...
T Consensus 87 ~la~~Aa~~AL~~ag~~~~dId~lI~~Tst~~~~Ps~--a~~v~~~LGl~~~~~~~dl~~~gCsg~~~aL~~A~~~i~~g 164 (361)
T cd00831 87 ELAEEAARGALDEAGLRPSDIDHLVVNTSTGNPTPSL--DAMLINRLGLRPDVKRYNLGGMGCSAGAIALDLAKDLLEAN 164 (361)
T ss_pred HHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCH--HHHHHHHHCCCCCHHEEECCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 9999999999998198989999999986599998976--99999973899870035564675568999999999999829
Q ss_pred CCCCCEEEEEECCCEEE
Q ss_conf 79984399970687479
Q gi|254781038|r 133 IAFPYLVLLVSGGHTQI 149 (363)
Q Consensus 133 ~~~PfL~LlvSGGhT~l 149 (363)
. . --+|+|+.=.+..
T Consensus 165 ~-~-~~vLVV~~E~~S~ 179 (361)
T cd00831 165 P-G-ARVLVVSTELCSL 179 (361)
T ss_pred C-C-CEEEEEEEEECCE
T ss_conf 9-9-7699996121120
No 80
>PRK06365 acetyl-CoA acetyltransferase; Provisional
Probab=73.14 E-value=5.7 Score=19.90 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCH-HHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9996999999999983898224536874066430-1256779999999887514864333
Q gi|254781038|r 59 HVDVLDILIKQTLLRANMQISDMDSIAVTAGPGL-MGGLIVGLMTAKAISYVSHKPFYAI 117 (363)
Q Consensus 59 H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~-~~~L~vG~~~Ak~la~~~~~Pli~V 117 (363)
..+.+...++++|+.++++..|||++.++..++. .+.+..|...+..|.+ ..+|.+.|
T Consensus 23 ~~~l~~eA~~~AL~DAGl~~~dIDg~v~~~~~~~~~~~~~~g~~~~~~lGl-~~~p~~~v 81 (415)
T PRK06365 23 FRLRVKKAFDYAMNDAGLTLADIDGSVASYFSDHFQRQLMAGIMVQDYLGL-VPKPSKRI 81 (415)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCC-CCCCEEEE
T ss_conf 999999999999997599989969888984178664210055899997188-88642577
No 81
>PRK08235 acetyl-CoA acetyltransferase; Provisional
Probab=72.49 E-value=5 Score=20.31 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=47.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC----CCCCHHH
Q ss_conf 121871455999999996999999999983898224536874066430125677999999988751486----4333036
Q gi|254781038|r 45 GHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKP----FYAINHL 120 (363)
Q Consensus 45 ~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~P----li~VnH~ 120 (363)
+++||.... ..-.+.....++++|++++++.++||.+-+..-..-. -|.+.|+..++..++| .+-||.+
T Consensus 15 gk~~G~l~~---~~~~dL~~~a~~~~l~r~~l~~~~Id~vi~G~~~~~g----~g~~~aR~~~l~aGlp~~vp~~tV~~~ 87 (393)
T PRK08235 15 GKFGGSLKD---VKATELGGIAIKEALERANVSAEDVEEVIMGTVLQGG----QGQIPSRQAARAAGIPWEVQTETINKV 87 (393)
T ss_pred CCCCCCCCC---CCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCC----CCCCHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 378988789---9899999999999998739898999989999357335----455199999997699988860788254
Q ss_pred HHH
Q ss_conf 776
Q gi|254781038|r 121 EGH 123 (363)
Q Consensus 121 ~aH 123 (363)
-+=
T Consensus 88 CaS 90 (393)
T PRK08235 88 CAS 90 (393)
T ss_pred CHH
T ss_conf 405
No 82
>pfam02593 DUF166 Uncharacterized ArCR, COG1810.
Probab=71.57 E-value=7.1 Score=19.24 Aligned_cols=21 Identities=19% Similarity=0.146 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHCCCEEEECC
Q ss_conf 999999999986898899628
Q gi|254781038|r 288 FIRASLIDLCVLHGFRFVAPP 308 (363)
Q Consensus 288 ~LR~~l~~~~~~~~~~~~~P~ 308 (363)
-+|+.|++.+++.|+.+.+|.
T Consensus 87 g~~~~lk~~~e~~g~~~~~P~ 107 (215)
T pfam02593 87 GLRKGLKEQLEEFGVEVEFPE 107 (215)
T ss_pred CHHHHHHHHHHHCCCEEECCC
T ss_conf 128999999997597387787
No 83
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=69.56 E-value=8.8 Score=18.59 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=42.5
Q ss_pred CHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHH-HHHHHHHHHHHCCCEE
Q ss_conf 06889999999-----999999999999999987621445523654133458799-9999999998689889
Q gi|254781038|r 239 DIADICASFQV-----TVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHF-IRASLIDLCVLHGFRF 304 (363)
Q Consensus 239 ~~~diaasfQ~-----~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~-LR~~l~~~~~~~~~~~ 304 (363)
|.+|+..+..+ -+.++.+.++.+.+-.+-.... +...+|+.|||.-|+. +|++.-+-.+-.|+++
T Consensus 281 D~R~l~~~~~~g~~A~lA~~~f~~Ri~kyIg~y~a~L~-glDaiVFTaGIGENs~~iR~~v~~~L~~lGi~l 351 (396)
T COG0282 281 DMRDLEEAAAEGNEAKLALDMFVYRIAKYIGSYAAALG-GLDALVFTAGIGENSALVRELVCEGLAFLGIEL 351 (396)
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHHHHHCCEEE
T ss_conf 08899987436816899999999999999999999857-998899917646685899999985532247577
No 84
>TIGR00016 ackA acetate kinase; InterPro: IPR004372 Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate.; GO: 0016301 kinase activity, 0016774 phosphotransferase activity carboxyl group as acceptor, 0006082 organic acid metabolic process.
Probab=68.84 E-value=9.1 Score=18.49 Aligned_cols=87 Identities=16% Similarity=0.322 Sum_probs=57.3
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCEEEEEHHHHHH
Q ss_conf 106887542210245899999985112012106889999999999999999999999987621445-5236541334587
Q gi|254781038|r 208 LVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHK-QAVLVVSGGVASN 286 (363)
Q Consensus 208 ~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~-~~~lvv~GGVaaN 286 (363)
+.|+.++ +--||+=+-+|...++.+ +..+.+++| .++-+.|+.+.+-.|-.....+ +..||+.|||.-|
T Consensus 282 LNKkSGl-LGisg~sSDlR~i~~~~~--e~~e~a~~A-------~~~y~~R~~~YIg~Y~A~L~g~rlDaivFTGGIGEN 351 (416)
T TIGR00016 282 LNKKSGL-LGISGLSSDLRDIEDAYE--EGNEQAKLA-------IKVYVHRIAKYIGSYIASLEGNRLDAIVFTGGIGEN 351 (416)
T ss_pred HCCHHHH-HHHHHHHHHHHHHHHHHH--CCCHHHHHH-------HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 5002213-456543467899997363--267778999-------999999999999999972279820178882773435
Q ss_pred HH-HHHHHHHHHHHCCCEE
Q ss_conf 99-9999999998689889
Q gi|254781038|r 287 HF-IRASLIDLCVLHGFRF 304 (363)
Q Consensus 287 ~~-LR~~l~~~~~~~~~~~ 304 (363)
.. +|+..-+-.+.-|+++
T Consensus 352 ~~~vR~l~l~~l~~lG~~~ 370 (416)
T TIGR00016 352 AAEVRELVLEGLEVLGLEL 370 (416)
T ss_pred HHHHHHHHHHHHHHCCEEE
T ss_conf 3889999997656622025
No 85
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=68.81 E-value=6.7 Score=19.39 Aligned_cols=41 Identities=12% Similarity=0.321 Sum_probs=28.1
Q ss_pred CCEEEEEHHHHHHHHHHH--------------------HHHHHHHHCCCEEEECCHHHCCCH
Q ss_conf 523654133458799999--------------------999999868988996287887725
Q gi|254781038|r 274 QAVLVVSGGVASNHFIRA--------------------SLIDLCVLHGFRFVAPPARLCTDN 315 (363)
Q Consensus 274 ~~~lvv~GGVaaN~~LR~--------------------~l~~~~~~~~~~~~~P~~~~ctDN 315 (363)
...+++ ||..||.+|+. .+.+.+++++.++++|---.|+||
T Consensus 233 ~D~iii-gG~mantfl~a~~G~~iG~sl~e~~~~~~~~~i~~~a~~~~~kI~lP~D~vv~~~ 293 (419)
T PTZ00005 233 VDEMII-GGGMAYTFKKVLNNMPIGSSLFDEEGAKIVKEIMEKAKEKNVKILLPVDFVVADK 293 (419)
T ss_pred CCEEEE-CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCEEEEEECC
T ss_conf 786997-7279999999966998775543445679999999998863996657568998524
No 86
>PRK12578 acetyl-CoA acetyltransferase; Provisional
Probab=68.28 E-value=7.4 Score=19.12 Aligned_cols=62 Identities=13% Similarity=-0.011 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 996999999999983898224536874066430125677999999988751486433303677
Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEG 122 (363)
Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~a 122 (363)
.+.....+.++|+.++++..|||.+.+.........+.-+...+..+.+. ++|.+.|+..-+
T Consensus 22 ~eL~~eA~~~Al~dAgl~~~dVD~v~~G~~~~~g~~~~~~~~~a~~~Gl~-~~~~~~v~~~ca 83 (385)
T PRK12578 22 QELAWESIKEALEDAGITQKDVDLVVIGSTAYRGVELYPAPPVSEYSGLT-GKVPLRVEAACA 83 (385)
T ss_pred HHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHCCCC-CCCCEEECCCCH
T ss_conf 99999999999998492989959999945675552236289999975998-988668816677
No 87
>TIGR02707 butyr_kinase butyrate kinase; InterPro: IPR011245 This group represents bacterial butyrate kinase, an enzyme that facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate . The final steps in butyrate synthesis by anaerobic bacteria can occur via butyrate kinase and phosphotransbutyrylase or via butyryl-CoA:acetate CoA-transferase, the latter providing the dominant route for butyrate formation in human colonic bacteria .; GO: 0005524 ATP binding, 0047761 butyrate kinase activity, 0016310 phosphorylation, 0005737 cytoplasm.
Probab=68.06 E-value=9.4 Score=18.38 Aligned_cols=226 Identities=20% Similarity=0.329 Sum_probs=112.2
Q ss_pred HEEEEEECCCCCCEEEEEEEECCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC---C---
Q ss_conf 077887338888418988731133-462121871455999999996999999999983898224536874066---4---
Q gi|254781038|r 18 TAVAVVRRKDSHGEILAEAVLSQI-DQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAG---P--- 90 (363)
Q Consensus 18 tsvaiv~~~~~~~~il~~~~~sq~-~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~g---P--- 90 (363)
|=+||++++ +.+.+...+.. ++-++|-=|+- + .+.=-.+|.+.|++.|+++.++|||..-=| |
T Consensus 12 TK~avf~de----~~~~~~tlrH~~eEL~~f~~v~d----Q--feFR~~~i~~~L~e~Gi~~~~l~AvVgRGGLLkPi~G 81 (353)
T TIGR02707 12 TKLAVFEDE----KPLFEETLRHSVEELAKFKNVID----Q--FEFRKQVILEVLEEKGINISKLDAVVGRGGLLKPIEG 81 (353)
T ss_pred EEEEEEECC----EEEEEECCCCCHHHHHCCCCEEE----C--HHHHHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCC
T ss_conf 003356578----06786446258787305664021----1--2689999999987408871243157972770233389
Q ss_pred C-------HHHHHHH----------HHHHHHHHHHHHC-CCCCCC-----HHHH------HHHHCCCCC-----------
Q ss_conf 3-------0125677----------9999999887514-864333-----0367------765301322-----------
Q gi|254781038|r 91 G-------LMGGLIV----------GLMTAKAISYVSH-KPFYAI-----NHLE------GHILTARLT----------- 130 (363)
Q Consensus 91 G-------~~~~L~v----------G~~~Ak~la~~~~-~Pli~V-----nH~~------aH~~~~~l~----------- 130 (363)
| |.-=||- |.-.|+.||-.++ ||.+=| .=|| |+-...|-+
T Consensus 82 GTY~Vn~~MleDLk~~~~GeHASNLGaIIA~~lA~~~~diPafIVDPVVVDEledvARISG~P~i~RkSIfHALNqKAvA 161 (353)
T TIGR02707 82 GTYLVNEKMLEDLKEGKRGEHASNLGAIIARELADELNDIPAFIVDPVVVDELEDVARISGLPEIERKSIFHALNQKAVA 161 (353)
T ss_pred CEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCHHHHCCCCCCCCEEHHHHHHHHHHH
T ss_conf 60477655688885105887843368999999876518943588268335055101321388986411044443388999
Q ss_pred ----CC--C---CCCCEEEEEECCCEEEEEECCCCCCEECCCCCC-CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
Q ss_conf ----56--7---998439997068747999837564300022336-3002388889885288761035566655405733
Q gi|254781038|r 131 ----DD--I---AFPYLVLLVSGGHTQILLVRDVAHYDRLGTTID-DALGECFDKIAKSLGLPYPGGVEIEKAALMGDGK 200 (363)
Q Consensus 131 ----~~--~---~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~D-da~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~ 200 (363)
.+ . +.-|+..|+=||=| +-++..++.--.-+-+| + =||. |+
T Consensus 162 Rr~A~e~gK~YE~~N~ivaHlGGGIS--vaAH~~Gr~vDVNNALdGe--------------GPFS-------------PE 212 (353)
T TIGR02707 162 RRIAKELGKRYEEMNLIVAHLGGGIS--VAAHRKGRVVDVNNALDGE--------------GPFS-------------PE 212 (353)
T ss_pred HHHHHHCCCCCCCCCEEEEECCCCCE--EEEECCCCEEEEECCCCCC--------------CCCC-------------CC
T ss_conf 99999728960044548998288703--4145486179973477843--------------2938-------------75
Q ss_pred C-CCCCCHHCCCCCCCCCCCHHHHH------------------------HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 3-45861110688754221024589------------------------9999985112012106889999999999999
Q gi|254781038|r 201 R-FKFPCPLVQGTLCDFSFSGLKTS------------------------VQKTICAFDVLEKQDIADICASFQVTVVRIL 255 (363)
Q Consensus 201 ~-~~~P~p~~~~~~~dFSFSGLkTa------------------------v~~~i~~~~~~~~~~~~diaasfQ~~i~~~L 255 (363)
+ =.+ |+.+= .++.|||=-|. |.+.|+..+++-+.-...+||..-+.|-++=
T Consensus 213 RsG~L--P~~dl--v~lCySGkyT~~E~kKkI~G~GGl~ayLGTnD~reV~~~I~~GD~kA~~ildAMaYQiAKeIG~ma 288 (353)
T TIGR02707 213 RSGTL--PLGDL--VDLCYSGKYTKEEMKKKIVGKGGLVAYLGTNDAREVEKKIEAGDEKAKLILDAMAYQIAKEIGKMA 288 (353)
T ss_pred CCCCC--CHHHH--HHHHHCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_conf 45656--58889--998727610388999985267453325455888899999973108899999865458756774250
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHH-HHHHHHHHHH
Q ss_conf 999999999987621445523654133458799-9999999998
Q gi|254781038|r 256 QARLKQGFLLFRKAFPHKQAVLVVSGGVASNHF-IRASLIDLCV 298 (363)
Q Consensus 256 ~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~-LR~~l~~~~~ 298 (363)
.-.+.+++.+++.||.|=+++ +=+.+++..+
T Consensus 289 ------------vVL~G~VDAI~LTGGlAys~~f~v~~I~~~v~ 320 (353)
T TIGR02707 289 ------------VVLKGKVDAIILTGGLAYSKYFFVSEIRKRVS 320 (353)
T ss_pred ------------EEECCCEEEEEECCCHHCCCCHHHHHHHHCCC
T ss_conf ------------40037266898546013062045587761332
No 88
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=67.16 E-value=9.8 Score=18.26 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=35.0
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHH
Q ss_conf 455236541334587999999999998689889962878
Q gi|254781038|r 272 HKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPAR 310 (363)
Q Consensus 272 ~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~ 310 (363)
.+...+++|-|.-++.-|+++|.+.+++.+-+++.|.--
T Consensus 85 ~G~dlvv~SvGALaD~~l~~~l~~~A~~~g~~i~ipsGA 123 (267)
T PRK13301 85 AGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGA 123 (267)
T ss_pred CCCCEEEECHHHHCCHHHHHHHHHHHHHCCCEEEECCCH
T ss_conf 599699982378479889999999999779869974730
No 89
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=66.79 E-value=9.3 Score=18.42 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHH
Q ss_conf 99699999999998389822453687406643012567799999998875148----64333036776
Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHK----PFYAINHLEGH 123 (363)
Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~----Pli~VnH~~aH 123 (363)
.+.....++++|++++++.++||.|-+..--+.. -|.+.|+..++..++ |.+.||..-+=
T Consensus 23 ~~L~~~ai~~al~~agl~~~~Id~vi~G~~~~~g----~g~n~aR~~al~aGlp~~vp~~tV~~aCaS 86 (386)
T cd00751 23 DDLGAAVIKALLERAGLDPEEVDDVIMGNVLQAG----EGQNPARQAALLAGLPESVPATTVNRVCGS 86 (386)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCC----CCCCHHHHHHHHCCCCCCCCEEEEECHHHH
T ss_conf 9999999999999849898999989999506666----566399999997699988865888422168
No 90
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases; InterPro: IPR005958 This entry describes tyrosine aminotransferase (2.6.1.5 from EC) as found in animals and Trypanosoma cruzi (Euglenozoa). It is the first enzyme of a pathway of tyrosine degradation via homogentisate. L-tyrosine + 2-oxoglutarate = 4-hydroxyphenylpyruvate + L-glutamate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway are included in this family. ; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding, 0006519 amino acid and derivative metabolic process.
Probab=66.51 E-value=6.8 Score=19.36 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHCCCEEEECCHHHCC
Q ss_conf 87999999999998689889962878877
Q gi|254781038|r 285 SNHFIRASLIDLCVLHGFRFVAPPARLCT 313 (363)
Q Consensus 285 aN~~LR~~l~~~~~~~~~~~~~P~~~~ct 313 (363)
|||.|-=.+..+|+..|-++..|.|.||-
T Consensus 118 CsqAIe~~I~aLA~~pG~NILvPRPGfP~ 146 (424)
T TIGR01265 118 CSQAIEIVIEALAQNPGANILVPRPGFPL 146 (424)
T ss_pred CHHHHHHHHHHHHCCCCCCEECCCCCCCC
T ss_conf 22689999999726898835568777866
No 91
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.31 E-value=10 Score=18.15 Aligned_cols=58 Identities=21% Similarity=0.247 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 9999699999999998389822453687406643012567799999998875148643330367765
Q gi|254781038|r 58 AHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHI 124 (363)
Q Consensus 58 ~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~ 124 (363)
.+.+.+.+.+.+.+++.....++.|.|-+==|-|-+ +.+|+.+ ...++|++||| -||+
T Consensus 11 ~~s~~~~~~l~~~~~~~~~~~d~~DlviviGGDGT~------L~a~~~~-~~~~iPilGIN--~G~l 68 (259)
T PRK00561 11 PQTEPVLPKLKKVLKKKLAVEDGADYLFVLGGDGFF------VSTAANY-NCAGCKVVGIN--TGHL 68 (259)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHH------HHHHHHH-CCCCCCEEEEE--CCCC
T ss_conf 657999999999985478678899999998971999------9999985-54799689996--6973
No 92
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=66.27 E-value=10 Score=18.14 Aligned_cols=23 Identities=9% Similarity=0.003 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99699999999998389822453
Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMD 82 (363)
Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id 82 (363)
.+.......++|+++++...+++
T Consensus 72 ~~~~l~aa~~Al~dAGl~~~~~~ 94 (399)
T cd00832 72 TRLALAAADWALADAGVDPAALP 94 (399)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 99999999998886099845648
No 93
>PRK06845 consensus
Probab=66.14 E-value=10 Score=18.22 Aligned_cols=77 Identities=21% Similarity=0.301 Sum_probs=50.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC--CCCHHHHHHHHHHHHHHHHHH----HCCCCCC
Q ss_conf 6212187145599999999699999999998389822453687406--643012567799999998875----1486433
Q gi|254781038|r 43 QHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTA--GPGLMGGLIVGLMTAKAISYV----SHKPFYA 116 (363)
Q Consensus 43 ~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~--gPG~~~~L~vG~~~Ak~la~~----~~~Pli~ 116 (363)
.-++|||..... .-.+.....++++|++++++..+||.+.+.. +.|. -|.+.|+..++. .++|.+-
T Consensus 13 Pfg~~~G~l~~~---~~~~L~~~a~~~al~~~gi~~~~Id~vi~G~~~~~g~-----~~~~~aR~~aL~aGlp~~vp~~t 84 (392)
T PRK06845 13 PFGTFGGSLKDL---SATDLGVAAAKAALEQAGVSPEDIGHVVFGNVIQTGK-----DAIYLARHIGLKAGLPVGVPALT 84 (392)
T ss_pred CCCCCCCCCCCC---CHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCC-----CCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 303799876889---9999999999999987197989979899981564565-----43349999999769998887488
Q ss_pred CHHHHHHHHCC
Q ss_conf 30367765301
Q gi|254781038|r 117 INHLEGHILTA 127 (363)
Q Consensus 117 VnH~~aH~~~~ 127 (363)
||..-+==+.+
T Consensus 85 V~~~CaSG~~A 95 (392)
T PRK06845 85 VNRLCGSGFEA 95 (392)
T ss_pred EECHHHHHHHH
T ss_conf 84430388999
No 94
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.
Probab=65.46 E-value=9.3 Score=18.41 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCC---CCCCCHHH
Q ss_conf 999699999999998389822453687406643012567799999998875148---64333036
Q gi|254781038|r 59 HVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHK---PFYAINHL 120 (363)
Q Consensus 59 H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~---Pli~VnH~ 120 (363)
-.+.....++++|++++++.++||.|.++....-.. +-..++.++..+++ |..-||..
T Consensus 16 ~~eL~~~a~~~Al~dagi~~~~ID~v~~g~~~~~~~----~~~~~~~~a~~~G~~~~~~~~v~~~ 76 (375)
T cd00829 16 PLELAAEAARAALDDAGLEPADIDAVVVGNAAGGRF----QSFPGALIAEYLGLLGKPATRVEAA 76 (375)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHCEEEEEECCCCCC----CCHHHHHHHHHCCCCCCCEEEECCC
T ss_conf 999999999999998391989949999991287553----4769999999829999865886898
No 95
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=65.30 E-value=9.7 Score=18.31 Aligned_cols=42 Identities=29% Similarity=0.453 Sum_probs=25.4
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 53687406643012567799999998875148643330367765
Q gi|254781038|r 81 MDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHI 124 (363)
Q Consensus 81 id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~ 124 (363)
.|+|-.|.|||-+..+.-.+...|.|-...++|+.|| +-||=
T Consensus 236 PDGIfLSNGPGDP~~~~~~i~~i~~li~~~~iPifGI--CLGHQ 277 (383)
T CHL00197 236 PDGILLSNGPGDPSTVHYGIKTVKKLIKKANIPIFGI--CMGHQ 277 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE--CHHHH
T ss_conf 8889978999997898999999999996489978995--58899
No 96
>pfam00162 PGK Phosphoglycerate kinase.
Probab=65.15 E-value=6.6 Score=19.45 Aligned_cols=41 Identities=27% Similarity=0.508 Sum_probs=27.8
Q ss_pred CCEEEEEHHHHHHHHHHH-------------------HHHHHHHHCCCEEEECCHHHCCCH
Q ss_conf 523654133458799999-------------------999999868988996287887725
Q gi|254781038|r 274 QAVLVVSGGVASNHFIRA-------------------SLIDLCVLHGFRFVAPPARLCTDN 315 (363)
Q Consensus 274 ~~~lvv~GGVaaN~~LR~-------------------~l~~~~~~~~~~~~~P~~~~ctDN 315 (363)
...+++ ||+.||.+|.. .+.+.+++++.++++|.--.|+++
T Consensus 213 ~D~iii-gG~mantFL~A~G~~iG~sl~e~~~i~~a~~il~~a~~~~~~I~lP~D~vv~~~ 272 (383)
T pfam00162 213 VDKLLI-GGGMANTFLKAQGYNIGKSLVEEDLIETAKELLEKAKEKGVKIVLPVDVVVADE 272 (383)
T ss_pred CCEEEE-CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEC
T ss_conf 877897-728999999984981787457867899999999998743885878712676203
No 97
>PRK08304 stage V sporulation protein AD; Validated
Probab=64.99 E-value=11 Score=17.98 Aligned_cols=115 Identities=23% Similarity=0.327 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC-----HHHHHHHHCCCCCC-
Q ss_conf 999969999999999838982245368740664301256779999999887514864333-----03677653013225-
Q gi|254781038|r 58 AHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAI-----NHLEGHILTARLTD- 131 (363)
Q Consensus 58 ~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~V-----nH~~aH~~~~~l~~- 131 (363)
.+.+.+-..++.+|++++++.+|||.+-.. -|.-=+..+-.-+..++||++|+ .-+|+-.+++.+.+
T Consensus 55 AE~~m~~~A~~~al~Ka~l~~~dId~~~aG-------DLlnQ~i~s~f~ar~l~IPf~GlyGACST~~Esl~laa~~vdg 127 (336)
T PRK08304 55 AESKLMSDAIQQALQKANLKESDIDYLLAG-------DLLNQTISANFVARELGIPFLGLYGACSTMMESLALASMLIDG 127 (336)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHCEEEEEC-------HHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999749997787389722-------2455467766779865998010256778899999999999826
Q ss_pred -------------------CCCC---------CCEEEEEECCCEEEEEECCCCCCE----ECCCCCCCCHHHHHHHHHHH
Q ss_conf -------------------6799---------843999706874799983756430----00223363002388889885
Q gi|254781038|r 132 -------------------DIAF---------PYLVLLVSGGHTQILLVRDVAHYD----RLGTTIDDALGECFDKIAKS 179 (363)
Q Consensus 132 -------------------~~~~---------PfL~LlvSGGhT~l~~~~~~~~~~----ilg~T~Dda~Ge~~DK~ar~ 179 (363)
...| |-----|.|.-..|+- +.....+ -+|.-+|--+-+.+|=-|-|
T Consensus 128 g~A~~vla~tSSH~~tAErQFR~P~EyG~Qrp~tAqwTVTGaGa~il~-~~~~~p~It~~TiGkVvD~Gi~D~~nMGaAM 206 (336)
T PRK08304 128 GFADRVLAATSSHFATAERQFRFPTEYGGQRPPTAQWTVTGAGAVLLS-KEGSGPKITYATIGKVIDYGIKDPLDMGAAM 206 (336)
T ss_pred CCHHHHHEECCCCCHHHHHHCCCCHHCCCCCCCCCCEEEECEEEEEEE-CCCCCCEEEEEEEEEEEECCCCCCCCCHHHH
T ss_conf 636453100233420366551580320677998651788751799981-3899977989867888764888843035555
Q ss_pred C
Q ss_conf 2
Q gi|254781038|r 180 L 180 (363)
Q Consensus 180 L 180 (363)
-
T Consensus 207 A 207 (336)
T PRK08304 207 A 207 (336)
T ss_pred H
T ss_conf 3
No 98
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=64.68 E-value=11 Score=17.94 Aligned_cols=40 Identities=18% Similarity=0.143 Sum_probs=35.2
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHH
Q ss_conf 4552365413345879999999999986898899628788
Q gi|254781038|r 272 HKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARL 311 (363)
Q Consensus 272 ~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ 311 (363)
.+...+++|-|.-++..++++|.+.+++.+-++|.|.--.
T Consensus 84 ~g~dl~v~SvgALaD~~~~~~l~~~A~~~~~~i~ipsGAi 123 (265)
T PRK13303 84 AGIDCAVASVGALADEALRERLEQAAEAGGARLHLLSGAI 123 (265)
T ss_pred CCCCEEEECCHHHCCHHHHHHHHHHHHHCCCEEEECCCHH
T ss_conf 2998899881585798899999999986897599726234
No 99
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=64.56 E-value=11 Score=17.93 Aligned_cols=253 Identities=12% Similarity=0.086 Sum_probs=113.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHH-HHHHHHHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf 145599999999699999999998389822453687406643012567799-9999988751486433303677653013
Q gi|254781038|r 50 VVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGL-MTAKAISYVSHKPFYAINHLEGHILTAR 128 (363)
Q Consensus 50 v~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~-~~Ak~la~~~~~Pli~VnH~~aH~~~~~ 128 (363)
+.+..++.. .|-.+++++-...+..+...++ .+|. |.+|+...--. --|-.+|-+-. +.=||.--|=++..-
T Consensus 71 i~d~e~s~~---iL~~l~~~a~~~~g~~~~~p~~-VItV-Pa~ft~~qR~A~~~Aa~~AG~~~--v~li~EPtAAAlg~g 143 (335)
T PRK13929 71 IADYDMTTD---LLKQIMKKAGKNIGMTFRKPTV-VVCT-PSGSTAVERRAISDAVKNCGAKQ--VHLIEEPVAAAIGAD 143 (335)
T ss_pred ECCHHHHHH---HHHHHHHHHHHHCCCCCCCCCE-EEEE-CCCCCHHHHHHHHHHHHHCCCEE--EEEECCHHHHHHHCC
T ss_conf 456676799---9999999999851876688878-9992-99999999999999999759808--998440689998779
Q ss_pred CCCCCCCCCEEEEEECCCEEEEEECC-----CCCCEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 22567998439997068747999837-----5643000223363002388889885288761035566655405733345
Q gi|254781038|r 129 LTDDIAFPYLVLLVSGGHTQILLVRD-----VAHYDRLGTTIDDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFK 203 (363)
Q Consensus 129 l~~~~~~PfL~LlvSGGhT~l~~~~~-----~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~ 203 (363)
+..+-+..+|++=+=||+|++-++.- ..+..+=|...|.++-+.+-+ ..++... -...|++-.+-.
T Consensus 144 l~~~~~~~~lV~DlGGGT~Dvsvl~~~gv~~~~~~~lGG~d~D~aI~~~v~~---~~~~~ig-~~~ae~~k~~~~----- 214 (335)
T PRK13929 144 LPVDEPVANVVVDIGGGTTEVAIISFGGVVSCHSIRIGGDQLDEDIVSFVRK---KYNLLIG-ERTAEQVKIEIG----- 214 (335)
T ss_pred CCCCCCCEEEEEEECCCCEEEEEEEECCEEEECCCCCCCHHHHHHHHHHHHH---HHCHHCC-HHHHHHHHHHHH-----
T ss_conf 8667785299999479725899999678685278466676688999999998---6351108-999999999960-----
Q ss_pred CCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CC-CEEEEEH
Q ss_conf 861110688754221024589999998511201210688999999999999999999999998762144-55-2365413
Q gi|254781038|r 204 FPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPH-KQ-AVLVVSG 281 (363)
Q Consensus 204 ~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~-~~-~~lvv~G 281 (363)
........-.+++.|.- .+...+..-+-+..++...++..+.++ ++.+++.++.+...... .. +-++++|
T Consensus 215 --~~~~~~~~~~~~v~g~~-----~~~g~p~~~~l~~~~~~~~~~~~~~~i-~~~i~~~L~~~~pel~~di~d~gIvLvG 286 (335)
T PRK13929 215 --YALIDHETETMEVRGRD-----LVTGLPKTITLESKEIQGAMRESLLHI-LEAIRATLEDCPPELSGDIVDRGVILTG 286 (335)
T ss_pred --HCCCCCCCCCEEEECCC-----CCCCCCCEEEEEHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHCCCCEEEEC
T ss_conf --20022677651777653-----468987039974899999999999999-9999999983884332543278299977
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEE-ECCHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 345879999999999986898899-628788772589999999999984
Q gi|254781038|r 282 GVASNHFIRASLIDLCVLHGFRFV-APPARLCTDNAVMIAWAALERMEA 329 (363)
Q Consensus 282 GVaaN~~LR~~l~~~~~~~~~~~~-~P~~~~ctDNAaMIA~ag~~~~~~ 329 (363)
|-+-=..||+++++... .++. ..+|..|.=-||-+-.-=+++|+.
T Consensus 287 G~srip~i~~~l~~~~~---~~v~~~~nP~~~Va~GAa~~~~~i~~~~~ 332 (335)
T PRK13929 287 GGALLNGIKEWLSQEIV---VPVHVAANPLESVAIGTGRSLEVIDKLQK 332 (335)
T ss_pred CCCCHHHHHHHHHHHHC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 40432679999999978---19877988676799989999976999999
No 100
>PRK07516 acetyl-CoA acetyltransferase; Provisional
Probab=64.51 E-value=10 Score=18.15 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEECC-CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 9699999999998389822453687406-64301256779999999887514864333036776
Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMDSIAVTA-GPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGH 123 (363)
Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id~Iavt~-gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH 123 (363)
+.....++++|+.++++..|||.|.+.. .+|..+.-......+........+|.+.||..-+-
T Consensus 24 ~L~~~A~~~Al~dAgl~~~dID~v~~G~~~~g~~~~~~~~~~~~~~~~~l~~~p~~~v~~~caS 87 (389)
T PRK07516 24 SLIVRVAREALADAGIAAGDVDGIFLGHFNAGFSPQDFTASLVLQADPALRFKPATRVENACAT 87 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCHH
T ss_conf 9999999999999690989939999982474446432999999973675568755998787679
No 101
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=64.47 E-value=11 Score=17.92 Aligned_cols=170 Identities=14% Similarity=0.178 Sum_probs=84.9
Q ss_pred CCEEEEEECCCEEEEEEC-CCCCCEECCCCCCCCH-HHHHHHHHH---------HCCCCCCHHH-HHHHHHHHCC-----
Q ss_conf 843999706874799983-7564300022336300-238888988---------5288761035-5666554057-----
Q gi|254781038|r 136 PYLVLLVSGGHTQILLVR-DVAHYDRLGTTIDDAL-GECFDKIAK---------SLGLPYPGGV-EIEKAALMGD----- 198 (363)
Q Consensus 136 PfL~LlvSGGhT~l~~~~-~~~~~~ilg~T~Dda~-Ge~~DK~ar---------~Lgl~yPgGp-~ie~~A~~g~----- 198 (363)
-+|+.=+-|||..+-+++ +.+.++++++.-|... |+-||..=. .-|+....-+ .+.++-....
T Consensus 188 ~vlVyDlGGGTfDVSIl~~~~g~feVlat~GD~~LGG~DfD~~i~~~l~~~fk~~~~idl~~d~~al~rL~~aaEkaK~~ 267 (631)
T PRK00290 188 KILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLVDEFKKEQGIDLRKDKMALQRLKEAAEKAKIE 267 (631)
T ss_pred EEEEEECCCCCEEEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999889861888989933998999993488883828999999999999998761887567799999999999999997
Q ss_pred -----CCCCCCCCHHCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf -----3334586111068-8754221024589999998511201210688999999999999999999999998762144
Q gi|254781038|r 199 -----GKRFKFPCPLVQG-TLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPH 272 (363)
Q Consensus 199 -----~~~~~~P~p~~~~-~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~ 272 (363)
...+.+|.-.... +..+|+++ ....+-..+|..+-+.+ ..-+++++.... ....
T Consensus 268 LS~~~~a~i~l~~i~~~~~g~~~~~~~---------------iTR~~FE~l~~~l~~r~----~~~v~~aL~~A~-l~~~ 327 (631)
T PRK00290 268 LSSSQQTEINLPFITADASGPKHLDLK---------------LTRAKFEELTEDLVERT----IEPCRQALKDAG-LSVS 327 (631)
T ss_pred CCCCCCEEEEECCCCCCCCCCEEEEEE---------------EEHHHHHHHHHHHHHHH----HHHHHHHHHHHC-CCHH
T ss_conf 065872699840233578886579999---------------78999999899999999----999999999808-9822
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 55236541334587999999999998689889962878877258999999999998499
Q gi|254781038|r 273 KQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAWAALERMEAGL 331 (363)
Q Consensus 273 ~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ag~~~~~~g~ 331 (363)
.+..++++||-+.=..+|+.++++..+. |.....-|-++=+|.|=.-....|.
T Consensus 328 dId~ViLVGGsTRiP~Vq~~v~~~Fgk~------~~~~inPDeaVA~GAAiqa~iLsg~ 380 (631)
T PRK00290 328 DIDEVILVGGSTRMPAVQELVKEFFGKE------PNKGVNPDEVVAVGAAIQGGVLAGD 380 (631)
T ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCC------CCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 2159999178245679999999996889------7779691268998799999886387
No 102
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=63.68 E-value=10 Score=18.13 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=26.4
Q ss_pred EEEEHHHHHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 6541334587999999999998689889962
Q gi|254781038|r 277 LVVSGGVASNHFIRASLIDLCVLHGFRFVAP 307 (363)
Q Consensus 277 lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P 307 (363)
++++-|||....+.++++++++++|++...-
T Consensus 5 VaCGsGiaTSt~v~~ki~~~l~e~gi~~~i~ 35 (89)
T cd05566 5 VACGTGVATSTVVASKVKELLKENGIDVKVE 35 (89)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9989970399999999999999869915999
No 103
>PRK06064 acetyl-CoA acetyltransferase; Provisional
Probab=63.64 E-value=11 Score=17.89 Aligned_cols=58 Identities=19% Similarity=0.094 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEECC-CCCHHHHHHHHHHHHHHHHHHHC---CCCCCCHHHH
Q ss_conf 9699999999998389822453687406-64301256779999999887514---8643330367
Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMDSIAVTA-GPGLMGGLIVGLMTAKAISYVSH---KPFYAINHLE 121 (363)
Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id~Iavt~-gPG~~~~L~vG~~~Ak~la~~~~---~Pli~VnH~~ 121 (363)
+.....++++|++++++.+|||.|.+.. .||.+.. ....++.++...+ +|.+.||.+-
T Consensus 24 dL~~~a~~~al~~agl~~~~ID~vi~G~~~~g~~~~---~~~~a~~~a~~~Gl~~~p~~~v~~~c 85 (389)
T PRK06064 24 DLAVEAGLEALEDAGIDGKDIDAMYVGNMSGGRFVG---QEHIAALIADYAGLAPIPATRVEAAC 85 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCCCC---CCCHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 999999999999809498995999998127664343---24099999997599998668993753
No 104
>PRK06158 thiolase; Provisional
Probab=63.47 E-value=11 Score=17.83 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999996999999999983898224536874066430125677999999988
Q gi|254781038|r 57 RAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAIS 107 (363)
Q Consensus 57 ~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la 107 (363)
+...+.+...+.++|..++++.+|||++.+......+. |..++..|.
T Consensus 26 ~s~~eL~~eA~~~Al~DAGi~~~dID~~~~g~~~~~~~----g~~~a~~lG 72 (384)
T PRK06158 26 LSAMELLAQAAVRALADAGLTMADVDGLFTASPDSALW----GLSVAEYLG 72 (384)
T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCH----HHHHHHHCC
T ss_conf 79999999999999997599999909899971576653----999999829
No 105
>PRK05790 acetyl-CoA acetyltransferase; Provisional
Probab=63.34 E-value=10 Score=18.09 Aligned_cols=75 Identities=27% Similarity=0.404 Sum_probs=48.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC-CCHHHHHHHHHHHHHHHHHHHCC----CCCCCHH
Q ss_conf 121871455999999996999999999983898224536874066-43012567799999998875148----6433303
Q gi|254781038|r 45 GHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAG-PGLMGGLIVGLMTAKAISYVSHK----PFYAINH 119 (363)
Q Consensus 45 ~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~g-PG~~~~L~vG~~~Ak~la~~~~~----Pli~VnH 119 (363)
++++|-... ..-.+.....++++|++++++.++||.+-+..- |+ + -|.+.||..++..++ |.+-||.
T Consensus 15 gk~~G~l~~---~~~~~L~~~ai~~~l~r~gi~~~~Id~vi~G~~~~~---g--~g~n~aR~~~l~aGlp~~vp~~tV~r 86 (393)
T PRK05790 15 GKFGGALKD---VSAVELGAIVIKAALERAGVPPEQVDEVIMGQVLQA---G--AGQNPARQAAIKAGLPVEVPALTINK 86 (393)
T ss_pred CCCCCCCCC---CCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCC---C--CCCHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 356997688---999999999999999982989899998999933656---6--55549999999679998876489963
Q ss_pred HHHHHHCC
Q ss_conf 67765301
Q gi|254781038|r 120 LEGHILTA 127 (363)
Q Consensus 120 ~~aH~~~~ 127 (363)
.-+=-+.+
T Consensus 87 ~CaSG~~A 94 (393)
T PRK05790 87 VCGSGLKA 94 (393)
T ss_pred CCHHHHHH
T ss_conf 11576899
No 106
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=62.70 E-value=10 Score=18.12 Aligned_cols=44 Identities=36% Similarity=0.426 Sum_probs=35.8
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
Q ss_conf 453687406643012567799999998875148643330367765301
Q gi|254781038|r 80 DMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTA 127 (363)
Q Consensus 80 ~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~ 127 (363)
+.|+|-.|.|||-+..+.-.+...|.|- -++|+.|| +-||-+.+
T Consensus 208 ~pDGiflSNGPGDP~~~~~~i~~vr~l~--~~~PifGI--CLGHQlla 251 (356)
T PRK12838 208 NPDGIVLSNGPGDPKELQPYLPTIKDLA--SSYPILGI--CLGHQLIA 251 (356)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHH--CCCCEEEE--CHHHHHHH
T ss_conf 9748994389989688788999999997--49888997--48899999
No 107
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=60.79 E-value=13 Score=17.48 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=34.7
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHH
Q ss_conf 455236541334587999999999998689889962878
Q gi|254781038|r 272 HKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPAR 310 (363)
Q Consensus 272 ~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~ 310 (363)
.+...+++|-|.-++.-++++|.+.+++.|-+++.|.--
T Consensus 84 ~G~dlvv~SvGALaD~~l~~~L~~~A~~~g~~i~ipsGA 122 (265)
T PRK13304 84 NGKDVIIMSVGALADKELFLKLYKLAKENGCKIYLPSGA 122 (265)
T ss_pred CCCCEEEECHHHHCCHHHHHHHHHHHHHCCCEEEECCCH
T ss_conf 599899981368559899999999997379779982613
No 108
>PRK00714 dinucleoside polyphosphate hydrolase; Reviewed
Probab=60.22 E-value=13 Score=17.41 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=62.1
Q ss_pred ECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCC
Q ss_conf 02602207788733888841898873113346212187145599999999699999999998389822453687406643
Q gi|254781038|r 12 ETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPG 91 (363)
Q Consensus 12 ETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG 91 (363)
|.--|.-+|+++-. +.+++|+.-.+.....-.-.-|||-+-+. -..-+++++.+|.|++..++..|+.+.+.
T Consensus 3 d~~~YR~nVg~vi~-n~~g~vl~~~R~~~~~Wq~PqGgid~gE~------~~~aa~REl~EE~Gi~~~~v~ii~~~~~w- 74 (156)
T PRK00714 3 DDDGYRPNVGIILL-NRQGQVFWGRRIGQHSWQFPQGGIDPGET------PEQAMYRELYEEVGLRPEDVEILAETRDW- 74 (156)
T ss_pred CCCCCCCCEEEEEE-ECCCCEEEEEECCCCCEECCCCCCCCCCC------HHHHHHHHHHHHHCCCCCCEEEEEECCCC-
T ss_conf 77888876399999-09992999998899976799450079989------99999999999858982000457625883-
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEE
Q ss_conf 012567799999998875148643330367765301322567998439997068747999
Q gi|254781038|r 92 LMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILL 151 (363)
Q Consensus 92 ~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~ 151 (363)
+.++.| .++..+..-+.+.-..+ -+..+...|....|-+
T Consensus 75 ----------------l~Yd~P----~~~~~~~~~~~y~GQ~Q-kWfl~rf~g~d~~Inl 113 (156)
T PRK00714 75 ----------------LRYDLP----KRLVRRDWKPVCIGQKQ-KWFLLRLTGDDSEINL 113 (156)
T ss_pred ----------------EEEECC----HHHHHHHCCCCCCCCEE-EEEEEEEECCCCCEEC
T ss_conf ----------------898581----77642430587026368-9999998179851766
No 109
>PRK08142 acetyl-CoA acetyltransferase; Provisional
Probab=59.80 E-value=13 Score=17.36 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEE-EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 999969999999999838982245368-740664301256779999999887514864333036776
Q gi|254781038|r 58 AHVDVLDILIKQTLLRANMQISDMDSI-AVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGH 123 (363)
Q Consensus 58 ~H~~~l~~li~~~l~~a~~~~~~id~I-avt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH 123 (363)
.-.+.....+.++|+.++++..|||.+ +.+..||+.+. .++-.++++...++..+..
T Consensus 24 t~~~La~eA~~~AL~DAGl~~~DIDg~~~~~~~~~~~~~---------~~~~~lGi~~~~~~~~~~g 81 (388)
T PRK08142 24 SVAQLHAEVAKGALADAGLTLADVDGYFCAGDAPGLGPA---------SMVDYLGLKVRHVDSTETG 81 (388)
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCCCCCHH---------HHHHHCCCCCEEECCCCCC
T ss_conf 999999999999999759998999999876788874189---------9999709985764475463
No 110
>TIGR01815 TrpE-clade3 anthranilate synthase; InterPro: IPR010112 This entry represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.; GO: 0004049 anthranilate synthase activity, 0000162 tryptophan biosynthetic process.
Probab=59.00 E-value=7.1 Score=19.23 Aligned_cols=49 Identities=18% Similarity=0.318 Sum_probs=39.5
Q ss_pred CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH-HHHHHHHC
Q ss_conf 9822453687406643012567799999998875148643330-36776530
Q gi|254781038|r 76 MQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAIN-HLEGHILT 126 (363)
Q Consensus 76 ~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~Vn-H~~aH~~~ 126 (363)
++-...|+|--+-|||-+.-|-|-.+.+++++ .++|++||. =+||=+++
T Consensus 563 fd~~rPDLVVLSPGPGrP~dFdv~~Ti~aa~a--r~lP~FGVCLGLQg~vEa 612 (726)
T TIGR01815 563 FDEERPDLVVLSPGPGRPKDFDVKETIKAALA--RDLPVFGVCLGLQGLVEA 612 (726)
T ss_pred HHCCCCCEEEECCCCCCCCCCCHHHHHHHHHH--CCCCEEEEHHHHHHHHHH
T ss_conf 73279988986873123875447889999997--289857741346899987
No 111
>cd01703 Pol_iota Pol iota is member of the DNA polymerase Y-family, and has also been called Rad30 homolog B. Unlike classic DNA polymerases,Y-family polymerases are induced by DNA damage. They can transverse normal replication-blocking DNA lesions. Unlike Pol eta, Pol iota is unable to replicate through a cis-syn T-T dimer. In human Pol iota, the base-pairing mode in the active site at the replicative end mat bee Hoogsteen instead of Watson-Click. Human Pol iota can incorporate the correct nucleotide opposite a purine much more efficiently than opposite a pyrimidine. Pol iota prefers to insert Guanosine instead of Adenosine opposite Thymidine.
Probab=58.28 E-value=9.1 Score=18.48 Aligned_cols=35 Identities=14% Similarity=-0.060 Sum_probs=15.2
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHH
Q ss_conf 355666554057333458611106887542210245
Q gi|254781038|r 187 GVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLK 222 (363)
Q Consensus 187 Gp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLk 222 (363)
|..+-.+|..-|..... |....++-...=||..+-
T Consensus 255 g~~l~~~a~GiD~~~V~-~~~~~KSis~e~tF~~~~ 289 (394)
T cd01703 255 AQRIWGLAHGRDDTPVP-ASGPPQSISIEDSYKKCS 289 (394)
T ss_pred HHHHHHHHCCCCCCCCC-CCCCCCEEECCCCCCCCC
T ss_conf 99999995697899888-899986112343788888
No 112
>PRK07800 consensus
Probab=58.28 E-value=14 Score=17.19 Aligned_cols=64 Identities=22% Similarity=0.193 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHC----CCCCCCHHHHHHHHCC
Q ss_conf 9969999999999838982245368740664301256779999999887514----8643330367765301
Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSH----KPFYAINHLEGHILTA 127 (363)
Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~----~Pli~VnH~~aH~~~~ 127 (363)
.+....+++++|++++++.++||.|-+..--.... |.+.|+..++..+ +|.+.||.+-+==+.+
T Consensus 27 ~~L~~~~i~~~l~~~gl~p~~Id~vi~G~v~~~g~----g~n~aR~~~l~aglp~~vp~~tV~~~CaSGl~A 94 (393)
T PRK07800 27 SDLGGIAIKAALEKAGVAADQVDYVIMGQVLQAGA----GQIPARQAAVAAGIPMDVPALTINKVCLSGLDA 94 (393)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCC----CCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHH
T ss_conf 99999999999997499989989899992476676----650999999976989888569994501379999
No 113
>pfam06723 MreB_Mbl MreB/Mbl protein. This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl.
Probab=56.79 E-value=15 Score=17.03 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=39.5
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHHCCCEEE-ECCHHHCCCHHHHHHHHHHHHHH
Q ss_conf 365413345879999999999986898899-62878877258999999999998
Q gi|254781038|r 276 VLVVSGGVASNHFIRASLIDLCVLHGFRFV-APPARLCTDNAVMIAWAALERME 328 (363)
Q Consensus 276 ~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~-~P~~~~ctDNAaMIA~ag~~~~~ 328 (363)
.++++||=+-=..+|++|+++.. .++. -.+|..|.=-||.|+.-.+.+|+
T Consensus 276 ~ViLvGGsSriP~v~~~l~~~fg---~~~~~~~nPd~aVA~GAAi~~~~~~~~~ 326 (327)
T pfam06723 276 GIVLTGGGALLRGLDKLLSDETG---LPVHIAEDPLTCVALGTGKALENLDKLK 326 (327)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCHHHHHHHHHHHHHHCHHHHC
T ss_conf 29997762441479999999978---4988898867799998999985789752
No 114
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=56.46 E-value=15 Score=16.99 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=14.9
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 5368740664301256779999999887514864333
Q gi|254781038|r 81 MDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAI 117 (363)
Q Consensus 81 id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~V 117 (363)
.|+|-.|.|||-+..+..-+...|.+-. .++|+.||
T Consensus 213 pDGIflSNGPGDP~~~~~~i~~ik~li~-~~~PifGI 248 (355)
T PRK12564 213 PDGVFLSNGPGDPAALDYAIEMIKELLE-GKIPIFGI 248 (355)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHC-CCCCEEEE
T ss_conf 8889967999996887999999999852-69878998
No 115
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=56.22 E-value=15 Score=16.96 Aligned_cols=136 Identities=24% Similarity=0.211 Sum_probs=66.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCC---CCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 88889885288761035566655405733345---861110688754221024589999998511201210688999999
Q gi|254781038|r 172 CFDKIAKSLGLPYPGGVEIEKAALMGDGKRFK---FPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQ 248 (363)
Q Consensus 172 ~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~---~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ 248 (363)
.+.|..|.+|+---||..+-.+...-+.+++- |-.-+---+.+|++|| |-.+. -.-.+.|---..|
T Consensus 171 ~~~~~~Rv~giVSRGGsi~a~Wml~n~~ENply~~fd~lleI~k~yDvtlS-LGDgl----------RPG~i~DA~D~aQ 239 (432)
T COG0422 171 RTKRSGRVTGIVSRGGSIMAAWMLHNHKENPLYEHFDELLEIFKEYDVTLS-LGDGL----------RPGCIADANDEAQ 239 (432)
T ss_pred HHHHCCCEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCEEEE-CCCCC----------CCCCCCCCCCHHH
T ss_conf 987348653044265399999999758858256609999999998484664-25777----------8886467763889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHH-HHHHHHHHHHHHHHHHH-CCCEEEECCHHHCCC------------
Q ss_conf 9999999999999999987621445523654133-45879999999999986-898899628788772------------
Q gi|254781038|r 249 VTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGG-VASNHFIRASLIDLCVL-HGFRFVAPPARLCTD------------ 314 (363)
Q Consensus 249 ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GG-VaaN~~LR~~l~~~~~~-~~~~~~~P~~~~ctD------------ 314 (363)
.+=...|.+-+++|.+ .++...|=+=| |.-|+ |...++.+.+- .+.++| .--.+-||
T Consensus 240 ~~EL~tlgeL~krA~~-------~gVQvmVEGPGHvpl~~-I~~nv~l~k~~c~~aPfY-vLGPLvTDIApGYDHItsAI 310 (432)
T COG0422 240 FAELITLGELTKRAWE-------AGVQVMVEGPGHVPLNE-IEANVKLQKELCDGAPFY-VLGPLVTDIAPGYDHITSAI 310 (432)
T ss_pred HHHHHHHHHHHHHHHH-------CCCEEEEECCCCCCHHH-HHHHHHHHHHHCCCCCEE-EECCCCCCCCCCCHHHHHHH
T ss_conf 9999999999999998-------59879997898673999-999899999851799715-55774335577703788888
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 5899999999999
Q gi|254781038|r 315 NAVMIAWAALERM 327 (363)
Q Consensus 315 NAaMIA~ag~~~~ 327 (363)
-|||+||+|-.++
T Consensus 311 GaA~aa~~Gad~L 323 (432)
T COG0422 311 GAAMAAWAGADML 323 (432)
T ss_pred HHHHHHHCCCCEE
T ss_conf 8999876478658
No 116
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=56.19 E-value=15 Score=16.96 Aligned_cols=212 Identities=17% Similarity=0.252 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH--------HHHHHHHC-----
Q ss_conf 99699999999998389822453687406643012567799999998875148643330--------36776530-----
Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAIN--------HLEGHILT----- 126 (363)
Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~Vn--------H~~aH~~~----- 126 (363)
.+.|-..|+++.++- .....=.|..|+-+|+.+==.- ..+|.+...+++|++||| ...||-.+
T Consensus 83 ekKL~~aI~ea~~~~--~P~kaIfV~sTC~~glIGDDI~--aV~~~~~~~~gipVIpv~~~GF~g~s~~~G~~~a~~al~ 158 (421)
T cd01976 83 DKKLAKAIDEAYELF--PLNKGISVQSECPVGLIGDDIE--AVARKASKELGIPVVPVRCEGFRGVSQSLGHHIANDAIR 158 (421)
T ss_pred HHHHHHHHHHHHHHC--CCCEEEEEEECCCHHHHCCCHH--HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 999999999999857--9730899992373786556899--999998775299889986898577523068899999999
Q ss_pred CCCC--CCC--CCCCEEEEEECCCEEEEEECCCCCCEECCCCCCCCHHHH--HHHHHHHCCC----CCCHHHHHHHHHHH
Q ss_conf 1322--567--998439997068747999837564300022336300238--8889885288----76103556665540
Q gi|254781038|r 127 ARLT--DDI--AFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGEC--FDKIAKSLGL----PYPGGVEIEKAALM 196 (363)
Q Consensus 127 ~~l~--~~~--~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda~Ge~--~DK~ar~Lgl----~yPgGp~ie~~A~~ 196 (363)
-.+. .++ +-|+ +.-+||+.-- .|+. +.+.=..||+ -|+|+..++.++..
T Consensus 159 ~~vv~~~~~~~~~~~-------------------~iNiige~ni--~gd~~~i~~lL~~mGi~V~~~~tgd~t~~di~~~ 217 (421)
T cd01976 159 DHILGKRNEFEPTPY-------------------DVNIIGDYNI--GGDAWASRILLEEMGLRVVAQWSGDGTLNEMENA 217 (421)
T ss_pred HHHCCCCCCCCCCCC-------------------CEEEECCCCC--CCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHC
T ss_conf 984166887788984-------------------1799755667--6329999999998398379998089979999732
Q ss_pred CCCCCC-----------------CCCCHHCCCCCCCCCCCHHHHHH--HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 573334-----------------58611106887542210245899--99998511201210688999999999999999
Q gi|254781038|r 197 GDGKRF-----------------KFPCPLVQGTLCDFSFSGLKTSV--QKTICAFDVLEKQDIADICASFQVTVVRILQA 257 (363)
Q Consensus 197 g~~~~~-----------------~~P~p~~~~~~~dFSFSGLkTav--~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~ 257 (363)
.....- +|-+|. +..||-|++... +|.+.+.- .+ + +-.-. +.+++--..
T Consensus 218 ~~A~lNvv~C~~~~~~~A~~le~~yGiP~-----~~~~f~Gi~~T~~~Lr~IA~~f--G~-e---l~~~~-E~lI~~e~~ 285 (421)
T cd01976 218 HKAKLNLIHCYRSMNYIARMMEEKYGIPW-----MEYNFFGPTKIAESLRKIAAYF--DD-E---ITAKT-EEVIAEYKP 285 (421)
T ss_pred CCCCEEEEECHHHHHHHHHHHHHHHCCCE-----EEECCCCHHHHHHHHHHHHHHH--CH-H---HHHHH-HHHHHHHHH
T ss_conf 00769988535799999999999869896-----9515658799999999999985--90-8---88999-999999999
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCC
Q ss_conf 999999998762144552365413345879999999999986898899628788772
Q gi|254781038|r 258 RLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTD 314 (363)
Q Consensus 258 k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctD 314 (363)
+....++.++... .+.+-++.+||+-+-..++ .+++.|++++..--+++++
T Consensus 286 ~~~~~l~~yr~~L-~GKrv~i~~Gg~~~~~~i~-----~~~eLGmevV~~g~~~~~~ 336 (421)
T cd01976 286 AMEAVIAKYRPRL-EGKTVMLYVGGLRPRHYIG-----AYEDLGMEVVGTGYEFAHR 336 (421)
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHH-----HHHHCCCEEEEEEEECCCH
T ss_conf 9999999999870-8988999899874689999-----9998798899973122747
No 117
>PRK12379 propionate/acetate kinase; Provisional
Probab=56.08 E-value=15 Score=16.95 Aligned_cols=53 Identities=13% Similarity=0.358 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHH-HHHHHHHHHHHHCCCEE
Q ss_conf 9999999999999998762144552365413345879-99999999998689889
Q gi|254781038|r 251 VVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNH-FIRASLIDLCVLHGFRF 304 (363)
Q Consensus 251 i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~-~LR~~l~~~~~~~~~~~ 304 (363)
+++..+.++.+.+-.+-.... ++..||+.||+.-|+ .+|+++-+-++-.|+++
T Consensus 300 A~d~f~yri~k~IGa~~a~Lg-glDaiVFTgGIGEns~~iR~~i~~~l~~lGi~l 353 (400)
T PRK12379 300 AIKTFVHRIARHIAGHAASLH-RLDGIIFTGGIGENSSLIRRLVMEHLAVLGLEL 353 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 999999999999999999868-999999878546688999999985302429067
No 118
>PRK10310 galactitol-specific PTS system component IIB; Provisional
Probab=55.66 E-value=15 Score=16.90 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=26.8
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 36541334587999999999998689889962
Q gi|254781038|r 276 VLVVSGGVASNHFIRASLIDLCVLHGFRFVAP 307 (363)
Q Consensus 276 ~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P 307 (363)
-+.++.|||-.....++++++|+++|+++-+-
T Consensus 6 lVACGsGIATSTvva~kv~~~~~e~gi~v~i~ 37 (94)
T PRK10310 6 IVACGGAVATSTMAAEEIKELCQSHNIPVELI 37 (94)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99858837599999999999999859806899
No 119
>KOG1250 consensus
Probab=55.58 E-value=15 Score=16.89 Aligned_cols=43 Identities=33% Similarity=0.554 Sum_probs=18.1
Q ss_pred CEEEECCCCCHHHHHHHHHHHH-HHHHHHHCCCCCCCHHHHHHHHCCCC
Q ss_conf 3687406643012567799999-99887514864333036776530132
Q gi|254781038|r 82 DSIAVTAGPGLMGGLIVGLMTA-KAISYVSHKPFYAINHLEGHILTARL 129 (363)
Q Consensus 82 d~Iavt~gPG~~~~L~vG~~~A-k~la~~~~~Pli~VnH~~aH~~~~~l 129 (363)
++|.|..|=| ||..|+.++ |.++ +++|+|||----+|.+..-+
T Consensus 217 ~AI~vpVGGG---GLiaGIat~vk~~~--p~vkIIGVEt~~a~~f~~sl 260 (457)
T KOG1250 217 GAIVVPVGGG---GLIAGIATGVKRVG--PHVKIIGVETEGAHSFNASL 260 (457)
T ss_pred CEEEEECCCC---HHHHHHHHHHHHHC--CCCCEEEEEECCCHHHHHHH
T ss_conf 7499960772---16899999999738--88736887406727889987
No 120
>pfam07451 SpoVAD Stage V sporulation protein AD (SpoVAD). This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation.
Probab=54.15 E-value=16 Score=16.74 Aligned_cols=114 Identities=20% Similarity=0.280 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC-----HHHHHHHHCCCCCC-
Q ss_conf 999969999999999838982245368740664301256779999999887514864333-----03677653013225-
Q gi|254781038|r 58 AHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAI-----NHLEGHILTARLTD- 131 (363)
Q Consensus 58 ~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~V-----nH~~aH~~~~~l~~- 131 (363)
.+.+.+-..++.+|++++++.+|||.+-.. -|.-=+..+-.-+..+++|++|+ .-+|+-.+++.+.+
T Consensus 50 AE~~m~~~A~~~al~Ka~l~~~dId~~~aG-------DLlnQ~i~ssf~ar~l~iPf~GlyGACST~~E~l~laa~~vd~ 122 (329)
T pfam07451 50 AESKMLEEAVKLALKKAGLKKDDIDYLLAG-------DLLNQIISSSFAARTLGIPFLGLYGACSTMMESLALAAMLVDG 122 (329)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHCEEEEEC-------HHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999998749998886489501-------2443257777889863998121135667789999999999846
Q ss_pred -------------------CCCC---------CCEEEEEECCCEEEEEECCCCCCE----ECCCCCCCCHHHHHHHHHHH
Q ss_conf -------------------6799---------843999706874799983756430----00223363002388889885
Q gi|254781038|r 132 -------------------DIAF---------PYLVLLVSGGHTQILLVRDVAHYD----RLGTTIDDALGECFDKIAKS 179 (363)
Q Consensus 132 -------------------~~~~---------PfL~LlvSGGhT~l~~~~~~~~~~----ilg~T~Dda~Ge~~DK~ar~ 179 (363)
...| |-----|.|.-..|+--+. ...+ -+|.-+|--+-+.+|=-|-|
T Consensus 123 g~A~~vla~tSSH~~tAErQFR~P~EyG~QrpptAqWTVTGaGa~il~~~~-~~p~It~~TiGkVvD~Gi~Dp~nMGaAM 201 (329)
T pfam07451 123 GFADYVLAATSSHFASAERQFRFPTEYGGQRPPTAQWTVTGAGAVLLGKEG-DGPRITSATIGKVVDYGIKDPNNMGAAM 201 (329)
T ss_pred CCHHHEEEEECCCCHHHHHHCCCCHHCCCCCCCCCCEEEECEEEEEEECCC-CCCEEEEEEEEEEEECCCCCCCCCHHHH
T ss_conf 654341343144520366542682211677998663788751899994389-9877989877888765888843025556
No 121
>PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=53.54 E-value=17 Score=16.68 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCC---CEEEECCC
Q ss_conf 9969999999999838982245---36874066
Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDM---DSIAVTAG 89 (363)
Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~i---d~Iavt~g 89 (363)
.+.......++|+++++...++ +.++|-.|
T Consensus 83 ~~~~l~aa~eAl~dAG~~~~~~~~~~r~gvivg 115 (424)
T PRK06333 83 ITFAMAAAKEAIAQAGWDPDNLPDRERTATIIG 115 (424)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEE
T ss_conf 999999999999975998246267765799996
No 122
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=53.50 E-value=14 Score=17.19 Aligned_cols=63 Identities=10% Similarity=0.172 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEECCC-CCHHHHHHHHHHHHHHHHHHH----CCCCCCCHHHHHHHHCC
Q ss_conf 96999999999983898224536874066-430125677999999988751----48643330367765301
Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMDSIAVTAG-PGLMGGLIVGLMTAKAISYVS----HKPFYAINHLEGHILTA 127 (363)
Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id~Iavt~g-PG~~~~L~vG~~~Ak~la~~~----~~Pli~VnH~~aH~~~~ 127 (363)
+....+++.++++++++.++||.|.+..- |.-... ...||..++.- .+|.+-||.+-+==+.+
T Consensus 34 ~L~a~~~~~~l~r~gi~~~~Id~vi~G~~~~~g~~~----~~~aR~~~l~aGlp~~vpa~tVn~~CaSG~~A 101 (394)
T PRK06445 34 ELAAVLINALIEKTGIKPEEIGDVITGCALQVGENW----LYGGRHVVLLAKLPYTIPAMHVDRQCASSLTT 101 (394)
T ss_pred HHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCC----CCHHHHHHHHCCCCCCCCEEEECCHHHHHHHH
T ss_conf 999999999998749898996979996475556566----74889999976999888748885541689999
No 123
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=53.38 E-value=11 Score=17.95 Aligned_cols=77 Identities=16% Similarity=0.143 Sum_probs=47.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC----CCCCH
Q ss_conf 62121871455999999996999999999983898224536874066430125677999999988751486----43330
Q gi|254781038|r 43 QHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKP----FYAIN 118 (363)
Q Consensus 43 ~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~P----li~Vn 118 (363)
.-+++||-... ..-.+.....++.+|++++++.++||.|-+..-..-. .|-+.|+..++..++| .+-||
T Consensus 13 P~gk~~g~l~~---~~~~~L~~~~i~~~l~~~gl~~~~Id~vi~G~v~~~~----~g~n~ar~~al~aGlp~~vp~~tVn 85 (388)
T PRK06366 13 AIGKFGRSFSK---IKAPQLGGAAIKAVIDDAKLDPALVQEVIMGNVIQAG----VGQNPAGQAAYHAGLPFGVTKYTVN 85 (388)
T ss_pred CCCCCCCCCCC---CCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCC----CCCCHHHHHHHHCCCCCCCCEEEEC
T ss_conf 30058998688---9989999999999998719898998989999527545----5651999999975999888658885
Q ss_pred HHHHHHHC
Q ss_conf 36776530
Q gi|254781038|r 119 HLEGHILT 126 (363)
Q Consensus 119 H~~aH~~~ 126 (363)
.+-+==+.
T Consensus 86 r~C~Sgl~ 93 (388)
T PRK06366 86 VVCASGML 93 (388)
T ss_pred CCCHHHHH
T ss_conf 72559999
No 124
>PRK03348 DNA polymerase IV; Provisional
Probab=53.21 E-value=16 Score=16.86 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-------CC-------CEEEEC---------CHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 3345879999999999986-------89-------889962---------878877258999999999998499
Q gi|254781038|r 281 GGVASNHFIRASLIDLCVL-------HG-------FRFVAP---------PARLCTDNAVMIAWAALERMEAGL 331 (363)
Q Consensus 281 GGVaaN~~LR~~l~~~~~~-------~~-------~~~~~P---------~~~~ctDNAaMIA~ag~~~~~~g~ 331 (363)
--+..-..|++.+..+++. .| +++-+. -+.+-||.+.-|.-++...+..-+
T Consensus 255 ~Dltd~~~l~~~l~~lae~v~~rLR~~g~~artVtVkiR~sdF~t~TRs~TL~~pTd~~~~i~~aA~~Ll~~~~ 328 (456)
T PRK03348 255 VDLTTREQLREAIERIAEHAHRRLLKDGRGARTVTVKLRKSDFSTLTRSATLPYATDDAATLRAAARRLLPDPD 328 (456)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 89899999999999999999999997699630799999889987640244777767998999999999997435
No 125
>TIGR01063 gyrA DNA gyrase, A subunit; InterPro: IPR005743 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively. This entry represents the A subunit (gyrA) as found predominantly in bacteria, but does not include the topoisomerase II enzymes composed of a single polypeptide, as are found in most eukaryotes. GyrA has two functional domains: an N-terminal that forms the covalent DNA-protein bridge that is responsible for the breaking- and rejoining function, and a C-terminal that can bind DNA non-specifically . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=53.01 E-value=15 Score=17.03 Aligned_cols=97 Identities=23% Similarity=0.300 Sum_probs=78.2
Q ss_pred EEEEECCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE--------CCCCCHHHHHHHHHHHH
Q ss_conf 887311334621218--71455999999996999999999983898224536874--------06643012567799999
Q gi|254781038|r 34 AEAVLSQIDQHGHYG--GVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAV--------TAGPGLMGGLIVGLMTA 103 (363)
Q Consensus 34 ~~~~~sq~~~~~~~G--Gv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iav--------t~gPG~~~~L~vG~~~A 103 (363)
+..|...++=|+-|| +==|-.|-|.-...|.++-.+.|+. ++-+.+|.+.= |+=|+.||.|+|.=+-.
T Consensus 89 FSlRYpLvDGQGNFGSiDGD~pAAMRYTEaRl~k~a~~ll~D--IdKeTVdF~~NYDg~~~EP~VLPs~fPnLLvNGSsG 166 (864)
T TIGR01063 89 FSLRYPLVDGQGNFGSIDGDPPAAMRYTEARLTKIAEELLRD--IDKETVDFVPNYDGSEKEPTVLPSRFPNLLVNGSSG 166 (864)
T ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
T ss_conf 100354416888647888882676521788888999999862--043631654488886258820751241456132476
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCC----------------CCCCCCC
Q ss_conf 99887514864333036776530132----------------2567998
Q gi|254781038|r 104 KAISYVSHKPFYAINHLEGHILTARL----------------TDDIAFP 136 (363)
Q Consensus 104 k~la~~~~~Pli~VnH~~aH~~~~~l----------------~~~~~~P 136 (363)
=+..++.|+| -|--+=+.-+.+ ...|.||
T Consensus 167 IAVGMATNIP----PHNL~Eiida~~~~i~Np~~~i~eLl~~i~GPDFP 211 (864)
T TIGR01063 167 IAVGMATNIP----PHNLGEIIDAILAYIDNPDISIEELLEVIKGPDFP 211 (864)
T ss_pred CCCCCCCCCC----CCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCC
T ss_conf 0002225788----73368999999998718998867995607711371
No 126
>PRK13410 molecular chaperone DnaK; Provisional
Probab=52.92 E-value=17 Score=16.61 Aligned_cols=169 Identities=17% Similarity=0.274 Sum_probs=84.6
Q ss_pred CCEEEEEECCCEEEEEEC-CCCCCEECCCCCCCCHH-HHHHHHH---------HHCCCCCCHHH-HHHHHHHHCCCCCC-
Q ss_conf 843999706874799983-75643000223363002-3888898---------85288761035-56665540573334-
Q gi|254781038|r 136 PYLVLLVSGGHTQILLVR-DVAHYDRLGTTIDDALG-ECFDKIA---------KSLGLPYPGGV-EIEKAALMGDGKRF- 202 (363)
Q Consensus 136 PfL~LlvSGGhT~l~~~~-~~~~~~ilg~T~Dda~G-e~~DK~a---------r~Lgl~yPgGp-~ie~~A~~g~~~~~- 202 (363)
-+|+.=+-||+..+-+++ ..+.|+++++.-|...| +-||+.= +.-|+....-+ .+.++-.....-+.
T Consensus 188 ~VLVyDLGGGTfDVSIL~i~~GvfeVlAT~GDt~LGG~DFD~~Iv~~l~~ef~~k~giDl~~d~~al~RL~~aAEkAK~~ 267 (719)
T PRK13410 188 TILVFDLGGGTFDVSILEVGDGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEAEGIDLRRDRQALQRLTEAAEKAKIE 267 (719)
T ss_pred EEEEEECCCCCEEEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 79999779872788899960984899760588874877887999999999999863766433999999999999999997
Q ss_pred -------CCCCHHCCC---CCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf -------586111068---8754221024589999998511201210688999999999999999999999998762144
Q gi|254781038|r 203 -------KFPCPLVQG---TLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPH 272 (363)
Q Consensus 203 -------~~P~p~~~~---~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~ 272 (363)
.+..|+... ...+|++ ......-..+|..+-+. +..-+++++... ...+.
T Consensus 268 LS~~~~t~I~lp~i~~~~dg~~~l~~---------------~ITR~eFE~L~~~L~~R----t~~pv~~aL~dA-gl~~~ 327 (719)
T PRK13410 268 LSGVSVTDINLPFITATEDGPKHLET---------------RLTRSQFEDLCGDLVSR----LRRPVKRALKDA-GLSPV 327 (719)
T ss_pred CCCCCCEEEEECCCCCCCCCCCEEEE---------------EEEHHHHHHHHHHHHHH----HHHHHHHHHHHH-CCCHH
T ss_conf 07576525884233256778712699---------------97599999889999999----999999999983-89941
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 5523654133458799999999999868988996287887725899999999999849
Q gi|254781038|r 273 KQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAWAALERMEAG 330 (363)
Q Consensus 273 ~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ag~~~~~~g 330 (363)
.+..++++||-.-=..+|+.++++..+. |....--|-++=+|.|=.--...|
T Consensus 328 dId~VILVGGSTRIP~Vq~~V~e~FGke------p~~~iNPDEaVA~GAAiQA~iLsg 379 (719)
T PRK13410 328 QIDEVVLVGGSTRMPMVKQLVRSLIDRE------PNQNVNPDEVVAVGAAIQAGILAG 379 (719)
T ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCC------CCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 4139999788255488999999984999------788899717750318886431047
No 127
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=52.64 E-value=17 Score=16.58 Aligned_cols=14 Identities=50% Similarity=0.729 Sum_probs=10.9
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 23888898852887
Q gi|254781038|r 170 GECFDKIAKSLGLP 183 (363)
Q Consensus 170 Ge~~DK~ar~Lgl~ 183 (363)
.||+|-.|+..|..
T Consensus 124 ~E~IDELA~~aGv~ 137 (322)
T PRK11133 124 IECIDEIAKLAGVG 137 (322)
T ss_pred HHHHHHHHHHCCCH
T ss_conf 54599999980987
No 128
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=52.63 E-value=17 Score=16.58 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC-EEEECCCCC
Q ss_conf 9699999999998389822453-687406643
Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMD-SIAVTAGPG 91 (363)
Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id-~Iavt~gPG 91 (363)
+.....++++++++++.....+ .|.++.+-|
T Consensus 58 ~l~~~a~~~Al~dAgl~~~~~~~gv~~Gt~~g 89 (379)
T PRK05952 58 DLTQTTVTAALKDAGLTPPLTDCGVVIGSSRG 89 (379)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCC
T ss_conf 99999999999977999975465899996752
No 129
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=52.45 E-value=13 Score=17.33 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=27.4
Q ss_pred EEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHH
Q ss_conf 65413345879999999999986898899628788772589999
Q gi|254781038|r 277 LVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIA 320 (363)
Q Consensus 277 lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA 320 (363)
.+++.||++.-.++.++++.++++|++ +--...-+..++++.-
T Consensus 6 ~aCG~GvgSS~~ik~kve~~l~~~gi~-~~~~~~~v~~~~~~~~ 48 (93)
T COG3414 6 AACGNGVGSSTMIKMKVEEVLKELGID-VDVEQCAVDEIKALTD 48 (93)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCC-CEEEEEEECCCCCCCC
T ss_conf 987898028999999999999985998-4266677111145787
No 130
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=52.25 E-value=17 Score=16.54 Aligned_cols=40 Identities=20% Similarity=0.125 Sum_probs=25.3
Q ss_pred HHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999983898224536874066430125677999999988
Q gi|254781038|r 68 KQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAIS 107 (363)
Q Consensus 68 ~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la 107 (363)
.+++--.+-..-+-+.|+...-||=-+.|+++..+-+-.-
T Consensus 79 ~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~ 118 (396)
T COG1448 79 QKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFF 118 (396)
T ss_pred HHHHCCCCCHHHHHHHHHHEECCCCCHHHHHHHHHHHHHC
T ss_conf 9996489817777655763006776128999999999848
No 131
>PRK11617 endonuclease V; Provisional
Probab=51.59 E-value=18 Score=16.47 Aligned_cols=101 Identities=14% Similarity=0.159 Sum_probs=50.6
Q ss_pred CCEEEEEECCCHH---HE-EEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8468875026022---07-7887338888418988731133462121871455999999996999999999983898224
Q gi|254781038|r 5 KKTVIGIETSCDE---TA-VAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISD 80 (363)
Q Consensus 5 ~~~ILgIETScd~---ts-vaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~ 80 (363)
-++|=|+|-|... .+ +|+|-.+-.+.+++....... +....| +|-.=++.- ++. +-+++++....
T Consensus 28 ~~~VaGvDvSf~~~~~~~~Aa~Vvl~~p~l~vv~~~~~~~-~~~fPY---IPG~LaFRE---~p~-ll~a~~~L~~~--- 96 (223)
T PRK11617 28 PDLIAGADVGFEQGGEVTRAAMVLLKYPSLELVEYQVARI-ATTMPY---IPGFLSFRE---YPA-LLAAWEQLSQK--- 96 (223)
T ss_pred CCEEEEEEEEEECCCCEEEEEEEEEECCCCEEEEEEEEEE-ECCCCC---CCCHHHHCC---HHH-HHHHHHHCCCC---
T ss_conf 6389999886856997799999999889936999999997-436885---661465603---499-99999962779---
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 536874066430125677999999988751486433303
Q gi|254781038|r 81 MDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINH 119 (363)
Q Consensus 81 id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH 119 (363)
.|.+ .-.|=|..-.- +...|--|...+++|-|||--
T Consensus 97 PDvl-lvDG~Gi~HPR--r~GlAsHlGV~l~~PTIGVAK 132 (223)
T PRK11617 97 PDLV-FVDGHGISHPR--RLGVASHFGLLVDVPTIGVAK 132 (223)
T ss_pred CCEE-EECCCCCCCCC--CCCHHHEEEEECCCCCCCCCC
T ss_conf 9999-98797543762--416120245542878323005
No 132
>TIGR00289 TIGR00289 conserved hypothetical protein TIGR00289; InterPro: IPR005237 This family of conserved hypothetical proteins has no known function. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs in the family, the much longer protein YLR143W from Saccharomyces cerevisiae (Baker's yeast), and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group..
Probab=51.52 E-value=7.3 Score=19.14 Aligned_cols=52 Identities=21% Similarity=0.484 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 0121068899999999999999999999999876214455236541334587999999999998689889962
Q gi|254781038|r 235 LEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAP 307 (363)
Q Consensus 235 ~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P 307 (363)
.+|+++.|++-.+ +++. ..++.. ++.|||.+| |=++++.+.|++-|.+.+.|
T Consensus 70 eeEkEVedLag~l---------~~ld----------erGvea-~~~Ga~~S~-YQK~Rid~vCrelGlks~AP 121 (227)
T TIGR00289 70 EEEKEVEDLAGQL---------EELD----------ERGVEA-VVIGAIESE-YQKSRIDKVCRELGLKSIAP 121 (227)
T ss_pred CCCCHHHHHHHHH---------HHHH----------HCCCCE-EEECCEECC-HHHHHHHHHHHHHCCHHCCC
T ss_conf 6521176662155---------4455----------305454-788534101-12335778877714100276
No 133
>PRK09864 putative fructose-specific phosphotransferase system protein FrvX; Provisional
Probab=50.78 E-value=18 Score=16.39 Aligned_cols=46 Identities=11% Similarity=0.100 Sum_probs=33.4
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHH-HCCCHHHH
Q ss_conf 55236541334587999999999998689889962878-87725899
Q gi|254781038|r 273 KQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPAR-LCTDNAVM 318 (363)
Q Consensus 273 ~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~-~ctDNAaM 318 (363)
++-..+.-+|...|..|++.+.+.++++++++-+-... --||.+++
T Consensus 250 GP~i~~~d~~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~~ggTDa~~~ 296 (356)
T PRK09864 250 GPGLMLFDKRYFPNQKLVAALKNCAAHNDLPLQFSTMKTGATDGGRY 296 (356)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf 87699806876699999999999999849987998578887008999
No 134
>PRK12404 stage V sporulation protein AD; Provisional
Probab=50.61 E-value=18 Score=16.37 Aligned_cols=114 Identities=18% Similarity=0.278 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC-----HHHHHHHHCCCCCC-
Q ss_conf 999969999999999838982245368740664301256779999999887514864333-----03677653013225-
Q gi|254781038|r 58 AHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAI-----NHLEGHILTARLTD- 131 (363)
Q Consensus 58 ~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~V-----nH~~aH~~~~~l~~- 131 (363)
.+.+.+-..++.++++++++.+|||.+-.. -|.-=+..+-.-+..+++|++|+ .-+|+-.+++.+.+
T Consensus 53 AE~~m~~~A~~~al~Ka~l~~~dId~~~aG-------DLlnQ~i~ssf~ar~l~iPf~GlyGACST~~E~L~laa~~vd~ 125 (334)
T PRK12404 53 AHKKLFEEACSRATEKAKLRKDDIQFVLAG-------DLINQITPTSFAARTLGTPYLGLFGACSTSMEGLALGASIVNA 125 (334)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHCEEEEEC-------HHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999998749997886489612-------2443257877889864998011135667789999999999846
Q ss_pred -------------------CCCC---------CCEEEEEECCCEEEEEECCCCCCE----ECCCCCCCCHHHHHHHHHHH
Q ss_conf -------------------6799---------843999706874799983756430----00223363002388889885
Q gi|254781038|r 132 -------------------DIAF---------PYLVLLVSGGHTQILLVRDVAHYD----RLGTTIDDALGECFDKIAKS 179 (363)
Q Consensus 132 -------------------~~~~---------PfL~LlvSGGhT~l~~~~~~~~~~----ilg~T~Dda~Ge~~DK~ar~ 179 (363)
...| |-----|.|.-..|+--+. ...+ -+|.-+|--+-+.+|=-|-|
T Consensus 126 g~A~~vla~tSSH~~tAErQFR~P~EyG~QrpptAqWTVTGaGa~il~~~~-~~p~It~~TiGkVvD~Gi~D~~nMGaAM 204 (334)
T PRK12404 126 KGAKYLLTGASSHNTAVEKQFRYPTEYGGQKPPTAQWTVTGAGAAILSKTG-HGPRVTSATIGRVVDMGLTDPFNMGGAM 204 (334)
T ss_pred CCHHHEEEEECCCCHHHHHHCCCCHHCCCCCCCCCCEEEECEEEEEEECCC-CCCEEEEEEEEEEEECCCCCCCCCHHHH
T ss_conf 654350232044520366542582211677998662788761899994389-9977989877888765888843025555
No 135
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=50.22 E-value=19 Score=16.33 Aligned_cols=57 Identities=9% Similarity=0.109 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEE-ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 699999999998389822453687-4066430125677999999988751486433303
Q gi|254781038|r 62 VLDILIKQTLLRANMQISDMDSIA-VTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINH 119 (363)
Q Consensus 62 ~l~~li~~~l~~a~~~~~~id~Ia-vt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH 119 (363)
.-....+++|++++++.+|||+|- +|..|.+...= .....++.|...-+.+.+-||-
T Consensus 59 ma~~Aa~~AL~~agi~p~dIDllI~at~tpd~~~P~-tA~~v~~~LGl~~~~~afDi~~ 116 (339)
T PRK09258 59 GATEAARKALAEAGIDASDIGLLINTSVCRDQLEPA-TACRVHAELGLSKDCAIFDISN 116 (339)
T ss_pred HHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCC-HHHHHHHHHCCCCCEEEEEECC
T ss_conf 999999999997599989999999905114853781-8999999847998747865104
No 136
>PHA02517 putative transposase OrfB; Reviewed
Probab=49.90 E-value=19 Score=16.29 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999999868988996287887725899999999999
Q gi|254781038|r 287 HFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAWAALERM 327 (363)
Q Consensus 287 ~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ag~~~~ 327 (363)
+|--..+.+.++..|+...+.++.-|.|||.|=.|-+..+-
T Consensus 177 qy~s~~~~~~l~~~gi~~s~s~~g~p~dNa~~Esf~~tlK~ 217 (273)
T PHA02517 177 QYTSLAYTQRLKEAGIRASTSRRGDSYDNAPMESFNGSLKA 217 (273)
T ss_pred CCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 33089999999985986632688875643288999999868
No 137
>pfam10079 DUF2317 Uncharacterized protein conserved in bacteria (DUF2317). Members of this family of hypothetical bacterial proteins have no known function.
Probab=49.83 E-value=18 Score=16.41 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=29.7
Q ss_pred CCCCEEEECCC--CCHHHH-------HHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 24536874066--430125-------6779999999887514864333
Q gi|254781038|r 79 SDMDSIAVTAG--PGLMGG-------LIVGLMTAKAISYVSHKPFYAI 117 (363)
Q Consensus 79 ~~id~Iavt~g--PG~~~~-------L~vG~~~Ak~la~~~~~Pli~V 117 (363)
.+-+.++||.| +|++|| ...-+..|+.+...++.|+|||
T Consensus 81 ~~~~t~tV~TGqQ~gLftGPLY~iyKiis~I~la~~l~~~~~~~~VPV 128 (541)
T pfam10079 81 RSPNTFTVVTGQQAGLFTGPLYTIYKIISAINLAKELKEKLGYPVVPV 128 (541)
T ss_pred CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 589987997275144355509999999999999999999758980369
No 138
>PRK07157 acetate kinase; Provisional
Probab=49.66 E-value=19 Score=16.27 Aligned_cols=80 Identities=16% Similarity=0.290 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHH-HHHHHHH
Q ss_conf 221024589999998511201210688999999999999999999999998762144552365413345879-9999999
Q gi|254781038|r 216 FSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNH-FIRASLI 294 (363)
Q Consensus 216 FSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~-~LR~~l~ 294 (363)
...||+-+.++...+..+..+ ..+.+ +++..+.++.+.+-.+-.....++..||+.||+.-|+ .+|+++-
T Consensus 271 lG~sG~s~DmR~l~~~~~~gd--~~A~l-------A~d~f~yri~k~IGa~aa~LgG~lDalVFTgGIGEns~~vR~~i~ 341 (398)
T PRK07157 271 LGVSGVSSDLRDVIKAAESGN--LEASF-------ALDLYAQKIVDYLANYANKIGGKIDAIVFTAGVGENSAFVRELVI 341 (398)
T ss_pred EEECCCCCHHHHHHHHHHCCC--HHHHH-------HHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHH
T ss_conf 673278620999999887789--98999-------999999999999999999838988889985833678899999998
Q ss_pred HHHHHCCCEE
Q ss_conf 9998689889
Q gi|254781038|r 295 DLCVLHGFRF 304 (363)
Q Consensus 295 ~~~~~~~~~~ 304 (363)
+-++-.|+.+
T Consensus 342 ~~l~~lGi~l 351 (398)
T PRK07157 342 EKLHIPNLKL 351 (398)
T ss_pred HHHHHCCEEE
T ss_conf 4002429067
No 139
>PRK09409 insertion element IS2 transposase InsD; Reviewed
Probab=49.53 E-value=19 Score=16.26 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=14.5
Q ss_pred ECCCEEEEEECCCCCCEECCCCCCC
Q ss_conf 0687479998375643000223363
Q gi|254781038|r 143 SGGHTQILLVRDVAHYDRLGTTIDD 167 (363)
Q Consensus 143 SGGhT~l~~~~~~~~~~ilg~T~Dd 167 (363)
.|+---+..+-|..+=+++|-.++.
T Consensus 140 ~G~~lyla~VlD~~sReivgw~~s~ 164 (301)
T PRK09409 140 NGERLRVTFALDCCDREALHWAVTT 164 (301)
T ss_pred CCCEEEEEEEEEECCCEEEEEEEEC
T ss_conf 8988999997550563146888406
No 140
>pfam11543 UN_NPL4 Nuclear pore localisation protein NPL4. Npl4 is part of the heterodimer UN along with Ufd1 which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert.
Probab=49.21 E-value=19 Score=16.22 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=33.8
Q ss_pred EEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 479998375643000223363002388889885288761
Q gi|254781038|r 147 TQILLVRDVAHYDRLGTTIDDALGECFDKIAKSLGLPYP 185 (363)
Q Consensus 147 T~l~~~~~~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~yP 185 (363)
++|+.+++..-.+.+--+-.+.+++.++||+..+++|--
T Consensus 4 ~iiiRVqS~dGtkRIev~~~~t~~~l~~kV~~~f~~~~~ 42 (80)
T pfam11543 4 EIIIRVQSPDGTKRIEISSTSTLSTLLSKVAEELGFPNN 42 (80)
T ss_pred CEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHCCCCC
T ss_conf 189999888984677608701299999999999688976
No 141
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=48.57 E-value=6.1 Score=19.68 Aligned_cols=94 Identities=17% Similarity=0.231 Sum_probs=66.4
Q ss_pred ECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE----
Q ss_conf 026022077887338888418988731133462121871--45599999999699999999998389822453687----
Q gi|254781038|r 12 ETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGV--VPEVAARAHVDVLDILIKQTLLRANMQISDMDSIA---- 85 (363)
Q Consensus 12 ETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv--~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Ia---- 85 (363)
|+|+||+-|-...+ +..+...++-|+-||-+ -|..|.|.-.-.|.++-++.|.+ ++-+.+|.+.
T Consensus 85 D~siY~a~vrmaQ~--------f~~r~plidg~GNfGsidgd~~AAmRYTE~rls~~~~~~l~d--i~~~tv~f~~n~D~ 154 (745)
T PRK05561 85 DSAIYDAMVRMAQD--------FSYRYPLVDGQGNFGSIDGDPAAAMRYTEARLSKIAELLLEE--IDEGTVDFVPNFDG 154 (745)
T ss_pred HHHHHHHHHHHCCH--------HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCC
T ss_conf 04799999997330--------131575142788778999984376788988769999999963--06475132058799
Q ss_pred ----ECCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf ----406643012567799999998875148643
Q gi|254781038|r 86 ----VTAGPGLMGGLIVGLMTAKAISYVSHKPFY 115 (363)
Q Consensus 86 ----vt~gPG~~~~L~vG~~~Ak~la~~~~~Pli 115 (363)
=+.=|..+|.|+|.-+..-+..++.++|=.
T Consensus 155 ~~~EP~vLPa~~PnlL~NG~~GIAvGmaTnIPpH 188 (745)
T PRK05561 155 TLEEPTVLPARFPNLLLNGATGIAVGMATDIPPH 188 (745)
T ss_pred CCCCCCEECCCCCHHHCCCCCCEEEEEECCCCCC
T ss_conf 9767554304687411048862487664487997
No 142
>TIGR01110 mdcA malonate decarboxylase, alpha subunit; InterPro: IPR005777 This model describes malonate decarboxylase alpha subunit. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.; GO: 0016831 carboxy-lyase activity, 0006814 sodium ion transport.
Probab=48.48 E-value=12 Score=17.68 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=12.1
Q ss_pred CCCCCCCCHHHHH-HHHHHH
Q ss_conf 8754221024589-999998
Q gi|254781038|r 212 TLCDFSFSGLKTS-VQKTIC 230 (363)
Q Consensus 212 ~~~dFSFSGLkTa-v~~~i~ 230 (363)
+++||||||..+. +..+++
T Consensus 94 ~KlDFsf~Gpqslr~aqll~ 113 (551)
T TIGR01110 94 RKLDFSFAGPQSLRIAQLLE 113 (551)
T ss_pred CCCCCCCCHHHHHHHHHHHH
T ss_conf 01120134068999999987
No 143
>PRK12397 propionate kinase; Reviewed
Probab=48.11 E-value=20 Score=16.11 Aligned_cols=78 Identities=15% Similarity=0.246 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHH-HHHHHHH
Q ss_conf 221024589999998511201210688999999999999999999999998762144552365413345879-9999999
Q gi|254781038|r 216 FSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNH-FIRASLI 294 (363)
Q Consensus 216 FSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~-~LR~~l~ 294 (363)
...||+-+.++...++.+..+ ..+.+ +++..+.++.+.+-.+-... .++..||+.||+.-|+ .+|+++-
T Consensus 274 lGlsG~S~DmR~l~~~~~~g~--~~A~l-------A~d~f~yri~k~IGa~~a~L-gglDaiVFTgGIGEns~~iR~~v~ 343 (404)
T PRK12397 274 LGVSGVSSDYRDVEQAANTGN--RQAKL-------ALTLFAERIRATIGSYIMQM-GGLDALVFTGGIGENSARARSAVC 343 (404)
T ss_pred EECCCCCCHHHHHHHHHHCCC--HHHHH-------HHHHHHHHHHHHHHHHHHHH-CCCCEEEECCCCCCCCHHHHHHHH
T ss_conf 560477501999999887789--88999-------99999999999999999973-899999987834668899999998
Q ss_pred HHHHHCCCE
Q ss_conf 999868988
Q gi|254781038|r 295 DLCVLHGFR 303 (363)
Q Consensus 295 ~~~~~~~~~ 303 (363)
+-++-.|++
T Consensus 344 ~~L~~lGi~ 352 (404)
T PRK12397 344 HNLQFLGLA 352 (404)
T ss_pred HHHHHCCCE
T ss_conf 420341925
No 144
>PRK06364 consensus
Probab=47.69 E-value=20 Score=16.07 Aligned_cols=63 Identities=13% Similarity=0.128 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCC-CCHHH-HHHHHHHHHHHHHHH-HCCCCCCCHHHHH
Q ss_conf 996999999999983898224536874066-43012-567799999998875-1486433303677
Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMDSIAVTAG-PGLMG-GLIVGLMTAKAISYV-SHKPFYAINHLEG 122 (363)
Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id~Iavt~g-PG~~~-~L~vG~~~Ak~la~~-~~~Pli~VnH~~a 122 (363)
.+.....+.++|+.++++.+|||.+.+..+ +|.+. ...++...|-..... .++|.+.||-.-+
T Consensus 26 ~~L~~eA~~~Al~dAgl~~~dID~v~~~~~~~g~~~~~~~~~~~~a~~~gl~~~~vp~~~V~~~ca 91 (389)
T PRK06364 26 RDLAVEAGLEAIKDANIYSKDLQMLYASNSLAGTINEQSNIAALAADFSGIAEEHVPAVRVEASTA 91 (389)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCH
T ss_conf 999999999999880989899899988156665556524399999997599855886699887017
No 145
>PRK11678 putative chaperone; Provisional
Probab=47.61 E-value=20 Score=16.06 Aligned_cols=50 Identities=24% Similarity=0.220 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999876214455236541334587999999999998
Q gi|254781038|r 249 VTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCV 298 (363)
Q Consensus 249 ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~ 298 (363)
+.+.+-+.+|+...++.+-..-...+..++++||=+--..+|+.++++..
T Consensus 375 e~~i~~~l~r~~~~~~~~L~~Ag~~~D~V~lvGGss~iP~Vr~~~~~~Fg 424 (450)
T PRK11678 375 EEAISQPLARILELVQLALDQAQVKPDVIYLTGGSARSPLIRAALAQQLP 424 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCC
T ss_conf 99999999999999999999759999989984863501899999999769
No 146
>KOG1395 consensus
Probab=47.56 E-value=8.2 Score=18.80 Aligned_cols=49 Identities=22% Similarity=0.315 Sum_probs=35.5
Q ss_pred EEEEECCCCCCEECCCCCCCCHHHHHHHHHHHCCCC---CCHHHHHHHHHHH
Q ss_conf 799983756430002233630023888898852887---6103556665540
Q gi|254781038|r 148 QILLVRDVAHYDRLGTTIDDALGECFDKIAKSLGLP---YPGGVEIEKAALM 196 (363)
Q Consensus 148 ~l~~~~~~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~---yPgGp~ie~~A~~ 196 (363)
|.++.+..++-.|+.+|-----|-+.--+.-..||. |-|-...++.|.+
T Consensus 162 QallakrlGkknviaETGAGQhGvatA~a~a~FGl~C~v~mgAed~~rqaln 213 (477)
T KOG1395 162 QALLAKRLGKKNVIAETGAGQHGVATATACAKFGLDCTVYMGAEDYRRQALN 213 (477)
T ss_pred HHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHH
T ss_conf 9999987364315512478732068899998728742899522577777899
No 147
>TIGR01311 glycerol_kin glycerol kinase; InterPro: IPR005999 Glycerol kinase (2.7.1.30 from EC) is a bacterial sugar kinase which catalyzes the Mg-ATP-dependent phosphorylation of glycerol to yield glycerol 3-phosphate. The enzyme from Escherichia coli is an allosteric regulatory enzyme whose activity is inhibited by fructose 1,6-bisphosphate (FBP) and the glucose-specific phosphocarrier of the phosphoenolpyruvate:glycose phosphotransferase system, IIA(Glc), structural studies suggest a nucleophilic in-line transfer mechanism for the ATP-dependent phosphorylation of glycerol by glycerol kinase .; GO: 0004370 glycerol kinase activity, 0006072 glycerol-3-phosphate metabolic process.
Probab=47.33 E-value=21 Score=16.03 Aligned_cols=297 Identities=20% Similarity=0.204 Sum_probs=151.6
Q ss_pred CEEEEEECCCHHHEEEEEECCC-CCCEEEEE--EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC---CC
Q ss_conf 4688750260220778873388-88418988--731133462121871455999999996999999999983898---22
Q gi|254781038|r 6 KTVIGIETSCDETAVAVVRRKD-SHGEILAE--AVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQ---IS 79 (363)
Q Consensus 6 ~~ILgIETScd~tsvaiv~~~~-~~~~il~~--~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~---~~ 79 (363)
++|++||==. ++|=|||= | .++++++. +-++|+=++.=+===.|.+- -++...++.+++++++++ .+
T Consensus 1 ~yi~AIDQGT-TS~R~I~F--da~~g~~V~~~Q~E~~Q~fP~~GWVEHDP~EI----w~~~~~~~~~a~~k~~~~g~~~~ 73 (518)
T TIGR01311 1 KYILAIDQGT-TSSRAIVF--DAKDGNIVASHQKEFTQIFPKPGWVEHDPMEI----WESVLSVIAEALAKAGIKGISPD 73 (518)
T ss_pred CCEEEEECCC-CEEEEEEE--ECCCCCEEEECCEEEEEECCCCCCCCCCHHHH----HHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 9058997076-41048897--25557662231434576217889710386999----99999999999998336897875
Q ss_pred CCCEEEECCCC----------CHHHH-------HHHHHHHHHHHHHHHCC-CCCCCHHHH---HHHHCCCCC--------
Q ss_conf 45368740664----------30125-------67799999998875148-643330367---765301322--------
Q gi|254781038|r 80 DMDSIAVTAGP----------GLMGG-------LIVGLMTAKAISYVSHK-PFYAINHLE---GHILTARLT-------- 130 (363)
Q Consensus 80 ~id~Iavt~gP----------G~~~~-------L~vG~~~Ak~la~~~~~-Pli~VnH~~---aH~~~~~l~-------- 130 (363)
||.+|.+|.-= |.+-. .|. ..+++.|..-... += +|.. |=++++.|+
T Consensus 74 ~I~AIGITNQRETTvVWDk~TG~PlyNAIVWqD~RT-~~~c~~L~~~~~~~~~---~~~~~~TGLpld~YFSA~K~~WlL 149 (518)
T TIGR01311 74 DIAAIGITNQRETTVVWDKATGKPLYNAIVWQDRRT-ASICEELKAEGGGGRR---EFIREKTGLPLDPYFSATKLRWLL 149 (518)
T ss_pred HEEEECCCCCCEEEEEEECCCCCCCCCCEECCCCCC-HHHHHHHHHHCCCCCH---HHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 512520104630178875568391236110466430-7899999984178845---688855379877553378999987
Q ss_pred C------------CCC----CCCEEEEEECC---CEEEEEECCCCC---CEECCCCCCCCHHHHHHHHHHHCCCCCCHH-
Q ss_conf 5------------679----98439997068---747999837564---300022336300238888988528876103-
Q gi|254781038|r 131 D------------DIA----FPYLVLLVSGG---HTQILLVRDVAH---YDRLGTTIDDALGECFDKIAKSLGLPYPGG- 187 (363)
Q Consensus 131 ~------------~~~----~PfL~LlvSGG---hT~l~~~~~~~~---~~ilg~T~Dda~Ge~~DK~ar~Lgl~yPgG- 187 (363)
+ ++- .=+|.==++|| -.+.--+.|-.+ |-|=-..=|+-.-|.| ++|--==
T Consensus 150 DNVp~~r~aae~G~LlFGTiDTWL~WnLTGG~nG~~HvTDvtNASRT~LfNl~tl~WD~eLL~~f-------~IP~~iLm 222 (518)
T TIGR01311 150 DNVPGVREAAERGELLFGTIDTWLIWNLTGGVNGKVHVTDVTNASRTMLFNLHTLEWDDELLELF-------GIPREILM 222 (518)
T ss_pred HCCHHHHHHHHCCCCEECCCHHHHHHHHCCCCCCCEEECCCCCHHHHHHCCCHHHHHHHHHHHHH-------CCCHHHCC
T ss_conf 17388999974698433250246675315897886553378614687641401210008999872-------26477628
Q ss_pred HHHHHHHHH-CC--CC------CC--CCC-------------------C------------HHCC-CCCCCCCCCHHHHH
Q ss_conf 556665540-57--33------34--586-------------------1------------1106-88754221024589
Q gi|254781038|r 188 VEIEKAALM-GD--GK------RF--KFP-------------------C------------PLVQ-GTLCDFSFSGLKTS 224 (363)
Q Consensus 188 p~ie~~A~~-g~--~~------~~--~~P-------------------~------------p~~~-~~~~dFSFSGLkTa 224 (363)
|+|-..+.. |. +. .+ ..| . =+.| +...-||=.||.|.
T Consensus 223 PEv~sSse~yG~~~~~~~g~rd~~g~~iPI~G~lGDQQAAL~GQ~C~~~G~aKnTYGTGcFlL~NTG~~~~~S~hgLLTT 302 (518)
T TIGR01311 223 PEVRSSSEVYGETDPGRHGVRDLLGAEIPITGVLGDQQAALFGQACFKPGEAKNTYGTGCFLLMNTGEKPVISKHGLLTT 302 (518)
T ss_pred CCCCCCCHHCCEECCCCCCCHHHCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEEEECCCCEEE
T ss_conf 86587601447033576650343078972575000378999998622102332456310110221487621435887157
Q ss_pred HHHHHHHHCCCC--------------------------------------------------------------------
Q ss_conf 999998511201--------------------------------------------------------------------
Q gi|254781038|r 225 VQKTICAFDVLE-------------------------------------------------------------------- 236 (363)
Q Consensus 225 v~~~i~~~~~~~-------------------------------------------------------------------- 236 (363)
|-+.+..+....
T Consensus 303 vay~lgg~~p~~YALEGSvfvAGAavqWLRD~l~li~~a~e~E~LA~~V~~~~GVYFVPAFtGLgAPYWD~~ARG~I~Gl 382 (518)
T TIGR01311 303 VAYQLGGKKPTVYALEGSVFVAGAAVQWLRDNLKLIKHAAESEALARSVEDNGGVYFVPAFTGLGAPYWDPDARGAIFGL 382 (518)
T ss_pred EEEEECCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEC
T ss_conf 77874798872265012488888899998752363579889999997268999668863555687877682227597724
Q ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCEEEEEHHHHHHHHHHHHHHHHHHHCC-CEEEECCH
Q ss_conf --21068899999999999999999999999876214----455236541334587999999999998689-88996287
Q gi|254781038|r 237 --KQDIADICASFQVTVVRILQARLKQGFLLFRKAFP----HKQAVLVVSGGVASNHFIRASLIDLCVLHG-FRFVAPPA 309 (363)
Q Consensus 237 --~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~----~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~-~~~~~P~~ 309 (363)
.-.+++|+++.-++|+=+-.+- ..|| ++..+ ..++.|=|=||-+.|.+|.+...+++ | +++.-|..
T Consensus 383 Tr~T~~~Hi~RA~LEaiafQ~RDv-~~AM---~~D~gg~~~~~~~~LrVDGG~~~NnlLMQ~QADil---GC~~V~RP~~ 455 (518)
T TIGR01311 383 TRGTTKAHIARAALEAIAFQTRDV-LEAM---EKDAGGEEIVELKKLRVDGGMTNNNLLMQFQADIL---GCVPVVRPKV 455 (518)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-HHHH---HHHCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHH---CCCCEEECCC
T ss_conf 656567787898999999989999-9998---75168851035330001411230167899887675---7712000674
Q ss_pred HHCC-CHHHHHHHHHHHHH
Q ss_conf 8877-25899999999999
Q gi|254781038|r 310 RLCT-DNAVMIAWAALERM 327 (363)
Q Consensus 310 ~~ct-DNAaMIA~ag~~~~ 327 (363)
.=+| ==|||.|-.|.-.+
T Consensus 456 ~EtTALGAA~~AGla~G~w 474 (518)
T TIGR01311 456 TETTALGAAYAAGLAVGFW 474 (518)
T ss_pred CCCCHHHHHHHHHHHCCCC
T ss_conf 5621899999987540124
No 148
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=47.22 E-value=13 Score=17.34 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=28.0
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 22453687406643012567799999998875148643330
Q gi|254781038|r 78 ISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAIN 118 (363)
Q Consensus 78 ~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~Vn 118 (363)
..+.|+|-.|-|||.+.-...-....+.+ ..++|++||-
T Consensus 40 ~~~~~giiLS~GPg~p~~~~~~~~~~~~l--~~~iPiLGIC 78 (184)
T cd01743 40 LLNPDAIVISPGPGHPEDAGISLEIIRAL--AGKVPILGVC 78 (184)
T ss_pred HCCCCEEEECCCCCCHHHCCCHHHHHHHH--HCCCCEEEEC
T ss_conf 32979999999998925614609999998--4699899980
No 149
>CHL00094 dnaK heat shock protein 70
Probab=47.09 E-value=21 Score=16.00 Aligned_cols=169 Identities=17% Similarity=0.233 Sum_probs=83.3
Q ss_pred CCEEEEEECCCEEEEEEC-CCCCCEECCCCCCCCH-HHHHHHHHHH---------CCCCCCHHH-HHHHHHHHCCC----
Q ss_conf 843999706874799983-7564300022336300-2388889885---------288761035-56665540573----
Q gi|254781038|r 136 PYLVLLVSGGHTQILLVR-DVAHYDRLGTTIDDAL-GECFDKIAKS---------LGLPYPGGV-EIEKAALMGDG---- 199 (363)
Q Consensus 136 PfL~LlvSGGhT~l~~~~-~~~~~~ilg~T~Dda~-Ge~~DK~ar~---------Lgl~yPgGp-~ie~~A~~g~~---- 199 (363)
-+|+.=+-||++.+-+++ +.+.++++++.-|... |+-||+.=.. -|+....-+ .+.++......
T Consensus 188 ~vlVyDlGGGTfDvSil~~~~g~~eVlat~GD~~LGG~DfD~~i~~~l~~~f~~k~~id~~~d~~a~~rL~~aaEkaK~~ 267 (622)
T CHL00094 188 TILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVDWLIDEFKKKEGIDLKKDRQALQRLTEAAEKAKIE 267 (622)
T ss_pred EEEEEECCCCEEEEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 69999889864887778861883999994179875778999999999999986642134344799999999999999997
Q ss_pred ----CCCCCCCHHCCC---CCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf ----334586111068---8754221024589999998511201210688999999999999999999999998762144
Q gi|254781038|r 200 ----KRFKFPCPLVQG---TLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPH 272 (363)
Q Consensus 200 ----~~~~~P~p~~~~---~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~ 272 (363)
....+..|.... ...+|+++ ....+-..+|..+-+. +..-+++++.... ..+.
T Consensus 268 LS~~~~~~i~l~~i~~~~dg~~~~~~~---------------itR~~FE~l~~~l~~r----~~~~v~~~L~~a~-l~~~ 327 (622)
T CHL00094 268 LSNVTQTEINLPFITATPTGPKHLEKT---------------LTRAKFEELCSDLIDR----CRIPVENALKDAK-LDKS 327 (622)
T ss_pred CCCCCCEEEEECCCCCCCCCCEEEEEE---------------ECHHHHHHHHHHHHHH----HHHHHHHHHHHCC-CCHH
T ss_conf 588765047731332577887045789---------------7399999899999999----9999999999819-9988
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 5523654133458799999999999868988996287887725899999999999849
Q gi|254781038|r 273 KQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAWAALERMEAG 330 (363)
Q Consensus 273 ~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ag~~~~~~g 330 (363)
.+..++++||-+.=..+|+.++++..+. |...+.-|-|+=.|.|=.-....|
T Consensus 328 dId~ViLVGGstRiP~V~~~l~~~fgk~------~~~~inpDeaVA~GAAiqa~~ls~ 379 (622)
T CHL00094 328 DIDEVVLVGGSTRIPAIQELVKSLLGKD------PNQSVNPDEVVAIGAAIQAGVLAG 379 (622)
T ss_pred HCEEEEEECCCCCCHHHHHHHHHHHCCC------CCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9439999388125678999999985899------677968158999989998676548
No 150
>pfam07114 DUF1370 Protein of unknown function (DUF1370). This family consists of several hypothetical eukaryotic proteins of around 200 residues in length. Members of this family seem to be specific to mammals and their function is unknown.
Probab=46.96 E-value=21 Score=15.99 Aligned_cols=44 Identities=16% Similarity=0.316 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHH------HHHHHHHHHHHH
Q ss_conf 999699999999998389822453687406643012------567799999998
Q gi|254781038|r 59 HVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMG------GLIVGLMTAKAI 106 (363)
Q Consensus 59 H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~------~L~vG~~~Ak~l 106 (363)
-...+..+|++-+++ +.+-|-=-.+.||.+++ ||....-+-+.|
T Consensus 5 ~r~~i~eii~kk~~~----lp~~er~l~~yG~~~lG~na~~~GliaNslFRr~l 54 (187)
T pfam07114 5 RRPIIIEIIEKKFEQ----LPENDRTLLIYGSLYFGTNAAFSGLIANSLFRRIL 54 (187)
T ss_pred HHHHHHHHHHHHHHH----CCHHHHCHHHCCCEEEECCHHHHHHHHHHHHHHHH
T ss_conf 245899999999987----16765044424875774215788999999999999
No 151
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.81 E-value=21 Score=15.98 Aligned_cols=66 Identities=15% Similarity=0.212 Sum_probs=39.7
Q ss_pred CCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHCCCCCCCC
Q ss_conf 884688750260220778873388884189887311334621218714559999999969--999999999838982245
Q gi|254781038|r 4 IKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVL--DILIKQTLLRANMQISDM 81 (363)
Q Consensus 4 ~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l--~~li~~~l~~a~~~~~~i 81 (363)
|.|+-.|||--.---..|+++. ++.+.++..+. -.+.. -.++++.-.++++.++||
T Consensus 1 ~~m~fVGiDHGTsgi~~ai~d~---e~~~~Fklgra-------------------e~~~~~ek~~L~~l~de~~i~l~ei 58 (332)
T COG4020 1 MTMMFVGIDHGTSGIKFAIYDG---EKDPEFKLGRA-------------------ELRKVAEKSLLRELEDEARIALEEI 58 (332)
T ss_pred CCEEEEEECCCCCCEEEEEECC---CCCCEEEECHH-------------------HHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9329995547876168999758---98814772505-------------------6665658899997468637763421
Q ss_pred CEEEECCCCC
Q ss_conf 3687406643
Q gi|254781038|r 82 DSIAVTAGPG 91 (363)
Q Consensus 82 d~Iavt~gPG 91 (363)
|+||.|.+-|
T Consensus 59 dlialtYsMG 68 (332)
T COG4020 59 DLIALTYSMG 68 (332)
T ss_pred EEEEEEECCC
T ss_conf 1798852124
No 152
>pfam03214 RGP Reversibly glycosylated polypeptide.
Probab=46.79 E-value=16 Score=16.86 Aligned_cols=58 Identities=16% Similarity=0.035 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999699999999998389822453687406643012567799999998875148643
Q gi|254781038|r 55 AARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFY 115 (363)
Q Consensus 55 A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli 115 (363)
|..||+.||..=.--.+-. ++-|.-.-..--=-|+.-+||-|+.+|-+..+-+|+|=+
T Consensus 116 av~QHi~NL~~PaTPfFFN---TLYDPyR~GaDFVRGYPFSlReGV~~a~S~GLWln~~Dy 173 (349)
T pfam03214 116 AVEQHIKNLLTPATPFFFN---TLYDPYRKGADFVRGYPFSLREGVTCALSCGLWLNLADY 173 (349)
T ss_pred HHHHHHHHCCCCCCCCHHH---HCCCHHHCCCCHHCCCCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 8999988526998851122---034301126531136874121484155421300157565
No 153
>PRK13979 DNA topoisomerase IV subunit A; Provisional,Validated
Probab=46.75 E-value=15 Score=16.99 Aligned_cols=94 Identities=18% Similarity=0.225 Sum_probs=66.5
Q ss_pred ECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE----
Q ss_conf 0260220778873388884189887311334621218714--5599999999699999999998389822453687----
Q gi|254781038|r 12 ETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVV--PEVAARAHVDVLDILIKQTLLRANMQISDMDSIA---- 85 (363)
Q Consensus 12 ETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~--P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Ia---- 85 (363)
|+|.|||-|-.-.+ +..+...++-|+-||-|- |..|.|.-.-.|.++..+.|.. +.-+.+|.+.
T Consensus 88 D~avYdalVrmaQ~--------fs~r~pLidgqGNfGSidgD~~AAmRYTEarl~~~a~~ll~d--i~k~tVdf~~NyD~ 157 (959)
T PRK13979 88 DSSVYDAMVILAQN--------FTTRMPLIDGHGNWGSIDGDSAAAMRYTEARLTPIAMEMLRD--IDKDVVDMVDNYSD 157 (959)
T ss_pred CHHHHHHHHHHHCC--------HHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCCC
T ss_conf 04799999997000--------131276060678678999981034306888889999999833--04277476148898
Q ss_pred ----ECCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf ----406643012567799999998875148643
Q gi|254781038|r 86 ----VTAGPGLMGGLIVGLMTAKAISYVSHKPFY 115 (363)
Q Consensus 86 ----vt~gPG~~~~L~vG~~~Ak~la~~~~~Pli 115 (363)
-+.=|..+|.|+|.-+..-+..++.++|=.
T Consensus 158 s~~EP~VLPa~~PnLLvNGs~GIAVGMATnIPpH 191 (959)
T PRK13979 158 SEKEPKVLPARYPNLLVNGAFGIAVGLATNIPPH 191 (959)
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCHHHHHCCCCCC
T ss_conf 8768651357774322137740114122587997
No 154
>PRK12310 hydroxylamine reductase; Provisional
Probab=46.58 E-value=12 Score=17.65 Aligned_cols=112 Identities=25% Similarity=0.286 Sum_probs=68.2
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCC-C-------
Q ss_conf 51120121068899999999999999999999999876214455236541334587999999999998689-8-------
Q gi|254781038|r 231 AFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHG-F------- 302 (363)
Q Consensus 231 ~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~-~------- 302 (363)
+.+..++.....+--.|-+..+-.+..|+.-|++ ..+++.+.+.||--.-+.=|+...+++++-- -
T Consensus 238 ~~~~~~~~~~~~i~~GF~h~~vl~~A~~vveaVK------~G~Ir~FflvgGCDG~~~~R~YYtefa~~~P~DtvILTl~ 311 (429)
T PRK12310 238 ELPELEKESDETLTTGFHHTTVLSLADKIIEAVK------AGKIRRFFVIGGCDAPGKGREYYRELATSLPKDTVILTLS 311 (429)
T ss_pred HCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHH------CCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEECC
T ss_conf 5879977889748726338889877789999996------4996279998126899988625999998789972998643
Q ss_pred --EEEE--------------CCHHHCCC--HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --8996--------------28788772--5899999999999849998876200235787875775
Q gi|254781038|r 303 --RFVA--------------PPARLCTD--NAVMIAWAALERMEAGLPADDLSISPRSRWPLDEKAP 351 (363)
Q Consensus 303 --~~~~--------------P~~~~ctD--NAaMIA~ag~~~~~~g~~~~~~~~~~~~rw~ld~~a~ 351 (363)
++.| =+..=|-| -|++||.+=-+.|.-+. +++-++..-.| .+++|.
T Consensus 312 CgKyRfN~ldlG~I~GIPRlLD~GQCNDsYsai~IA~aLaeaf~~~V--NdLPls~vlsW-yEQKAV 375 (429)
T PRK12310 312 CGKFRFNDLDFGTIEGIPRYIDLGQCNDSISAVKIALALAEAFGCEV--NDLPLSIVLSW-MEQKAV 375 (429)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHH-HHHHHH
T ss_conf 12332357776675883443236665448999999999999868996--56746432368-889999
No 155
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=46.32 E-value=19 Score=16.33 Aligned_cols=49 Identities=14% Similarity=0.308 Sum_probs=31.5
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHCCCC
Q ss_conf 245368740664301256779999999887514864333---036776530132
Q gi|254781038|r 79 SDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAI---NHLEGHILTARL 129 (363)
Q Consensus 79 ~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~V---nH~~aH~~~~~l 129 (363)
.+.|+|..+-|||.+. -.|....---.++-++|++|| |-.-++++-+.+
T Consensus 44 ~~pd~iviSPGPG~P~--d~G~~~~~i~~~~~~~PiLGVCLGHQai~~~fGg~V 95 (191)
T COG0512 44 LKPDAIVISPGPGTPK--DAGISLELIRRFAGRIPILGVCLGHQAIAEAFGGKV 95 (191)
T ss_pred CCCCEEEECCCCCCHH--HCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCEE
T ss_conf 4999899848997937--736189999986089988998743789999739788
No 156
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=46.01 E-value=22 Score=15.89 Aligned_cols=58 Identities=16% Similarity=0.183 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCC-H-HHHHHHHHHHHHHHHHHH-CCCCCCCHH
Q ss_conf 99699999999998389822453687406643-0-125677999999988751-486433303
Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMDSIAVTAGPG-L-MGGLIVGLMTAKAISYVS-HKPFYAINH 119 (363)
Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG-~-~~~L~vG~~~Ak~la~~~-~~Pli~VnH 119 (363)
.+.-....+++|++++++.+|||+|-+....+ + +|+. ....++.|...- .+|.+-||-
T Consensus 53 sdma~~Aa~~aL~~agi~~~dIdliI~~s~t~d~~~P~~--A~~v~~~LGl~~~~~~afDi~~ 113 (329)
T PRK07204 53 SYMGAEAAKKAVEDAKLTWDDIDCIICGSGTIQQAIPST--ASLIQEQLGLQHSGIPCFDINS 113 (329)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCH--HHHHHHHHCCCCCCCEEEEHHH
T ss_conf 999999999999975989888849999257899889809--9999999647888835500301
No 157
>TIGR03233 DNA_S_dndB DNA sulfur modification protein DndB. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=45.67 E-value=13 Score=17.38 Aligned_cols=79 Identities=14% Similarity=0.186 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCCCCCCEEEEEHHHHHHHH
Q ss_conf 54221024589999998511201210688999999999999999-----9999999987621445523654133458799
Q gi|254781038|r 214 CDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQA-----RLKQGFLLFRKAFPHKQAVLVVSGGVASNHF 288 (363)
Q Consensus 214 ~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~-----k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~ 288 (363)
.=|++|.|+.+...++.+.+....++...++.+|=+++.+++-+ .-+..-...|+.+-+.-...+-+=|.+.|..
T Consensus 205 KLFTLs~I~~atk~Ll~~~~~~~~~e~~~~a~~FW~~v~~~mpeWq~v~~~~~s~~ElRe~yIh~HgV~LqALG~~G~~L 284 (355)
T TIGR03233 205 KLFTLSALNKASKYLLGKIGKDLITEAIQLAFEFWEAVCKNMPEWQLVREKKLSAGELRDDYIHAHGITLHALGLVGKHL 284 (355)
T ss_pred CEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 00569999999999964778664518999999999999971938899883578889998788689899999999999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254781038|r 289 IRAS 292 (363)
Q Consensus 289 LR~~ 292 (363)
+++.
T Consensus 285 ~~~~ 288 (355)
T TIGR03233 285 LRND 288 (355)
T ss_pred HHCC
T ss_conf 9708
No 158
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=43.20 E-value=24 Score=15.61 Aligned_cols=87 Identities=15% Similarity=0.066 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHH-CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEE
Q ss_conf 9699999999998-389822453687406643012567799999998875148643330367765301322567998439
Q gi|254781038|r 61 DVLDILIKQTLLR-ANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLV 139 (363)
Q Consensus 61 ~~l~~li~~~l~~-a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~ 139 (363)
+.+..+++.++.+ .++..++... -+|.-|-.....|. ..+..|=-.+++|-+-+... .+++++ .....- -|+
T Consensus 75 d~~e~i~~~~~~~~l~~~~~~~pv-lltep~~~~~~~r~--~~~e~lFE~~~vp~~~~~~~--~~la~~-~~g~~t-glV 147 (373)
T smart00268 75 DDMEKIWDYTFFNELRVEPEEHPV-LLTEPPMNPKSNRE--KILEIMFETFNFPALYIAIQ--AVLSLY-ASGRTT-GLV 147 (373)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCE-EEECCCCCCHHHHH--HHHHHHHHHCCCCEEEEECC--HHHHHH-HCCCCE-EEE
T ss_conf 999999999978750889667844-77427999999999--99999987669986999751--766665-438942-999
Q ss_pred EEEECCCEEEEEECC
Q ss_conf 997068747999837
Q gi|254781038|r 140 LLVSGGHTQILLVRD 154 (363)
Q Consensus 140 LlvSGGhT~l~~~~~ 154 (363)
+-+-.+.|.++-+.+
T Consensus 148 VDiG~~~t~v~pV~d 162 (373)
T smart00268 148 IDSGDGVTHVVPVVD 162 (373)
T ss_pred EECCCCCEEEEEEEC
T ss_conf 976999468998689
No 159
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=43.05 E-value=24 Score=15.59 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCE-EEECCCCCH-HHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 96999999999983898224536-874066430-125677999999988751486433303
Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMDS-IAVTAGPGL-MGGLIVGLMTAKAISYVSHKPFYAINH 119 (363)
Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id~-Iavt~gPG~-~~~L~vG~~~Ak~la~~~~~Pli~VnH 119 (363)
..-....+++|++++++.+|||+ |.+|.-|-+ +|+...- ..+.|...-+.+-+-||-
T Consensus 62 dla~~AA~~AL~~a~i~~~dID~II~aT~tpD~~~PstA~~--vq~~LGl~~~~~AfDI~~ 120 (353)
T PRK12880 62 DLGKHAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACY--LHQLLNLSSKTIAFDLGQ 120 (353)
T ss_pred HHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCHHHH--HHHHHCCCCCCEEEEHHH
T ss_conf 99999999999975999889999999737889088847899--999809998850887454
No 160
>pfam01902 ATP_bind_4 ATP-binding region. This family of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.In some members of this family, this domain is associated with pfam01042.
Probab=43.04 E-value=24 Score=15.59 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=27.9
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHH
Q ss_conf 55236541334587999999999998689889962878
Q gi|254781038|r 273 KQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPAR 310 (363)
Q Consensus 273 ~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~ 310 (363)
++.. ++.|.+.++ +.|+++++.|++.|++.++|-=.
T Consensus 85 ~i~~-vv~GdI~s~-~qr~~~e~~c~~lgl~~~~PLW~ 120 (219)
T pfam01902 85 DVDA-LVAGAIYSE-YQKSRIESVCRELGLKPFAPLWG 120 (219)
T ss_pred CCCE-EEECCCCCH-HHHHHHHHHHHHCCCEEEECCCC
T ss_conf 9869-999860368-89999999999729889710348
No 161
>TIGR00884 guaA_Cterm GMP synthase, C-terminal domain; InterPro: IPR001674 The amidotransferase family of enzymes utilises the ammonia derived from the hydrolysis of glutamine for a subsequent chemical reaction catalyzed by the same enzyme. The ammonia intermediate does not dissociate into solution during the chemical transformations . GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. The C-terminal domain is specific to the GMP synthases 6.3.5.2 from EC. In prokaryotes this domain mediates dimerisation. Eukaryotic GMP synthases are monomers. This domain in eukaryotes includes several large insertions that may form globular domains .; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006164 purine nucleotide biosynthetic process, 0006177 GMP biosynthetic process.
Probab=42.63 E-value=11 Score=17.94 Aligned_cols=58 Identities=26% Similarity=0.213 Sum_probs=36.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHH--HHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 218714559999999969999999999838982245368740664301256779--99999988751486433303677
Q gi|254781038|r 46 HYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVG--LMTAKAISYVSHKPFYAINHLEG 122 (363)
Q Consensus 46 ~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG--~~~Ak~la~~~~~Pli~VnH~~a 122 (363)
=.|||-.+.||- |+.+|+-. . +.||=.=-|+ ||-| -..-|.|.-.+++|++-|+=-+-
T Consensus 23 LSGGVDSsV~A~--------L~hrAIGD------~--L~~vFVD~GL---lR~gE~E~V~~~F~~~lg~nl~~VDA~e~ 82 (319)
T TIGR00884 23 LSGGVDSSVAAV--------LLHRAIGD------R--LTCVFVDHGL---LRKGEAERVVKTFSDKLGLNLVVVDAKER 82 (319)
T ss_pred ECCCHHHHHHHH--------HHHHHHCC------C--EEEEEECCCC---CCCCCHHHHHHHHHHHHCCCCEEECCCHH
T ss_conf 108815899999--------99864227------6--0489822788---87663789999987530898278761079
No 162
>PRK08256 lipid-transfer protein; Provisional
Probab=42.52 E-value=24 Score=15.54 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 9969999999999838982245368740664301256779999999887514864333036776
Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGH 123 (363)
Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH 123 (363)
.+.....++++|+.++++..|||.+-++.--|-. ..|...+..+.. .++|.+.||-.-+-
T Consensus 23 ~~L~~eA~~~AL~dAGi~~~~ID~v~~G~~~~~~---~~~~~a~~~~g~-~g~P~~tV~~~CaS 82 (391)
T PRK08256 23 PDMAAEAGRAALADAGIDYDEVQQAYVGYVYGDS---TSGQRALYEVGM-TGIPVVNVNNNCST 82 (391)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCC---CCHHHHHHHCCC-CCCCEEEECCCCHH
T ss_conf 9999999999999829898998999897036875---005999996133-69965888787616
No 163
>pfam05385 Adeno_E4 Mastadenovirus early E4 13 kDa protein. This family consists of human and simian mastadenovirus early E4 13 kDa proteins. Human adenovirus type 9 (Ad9) is unique in eliciting exclusively estrogen-dependent mammary tumours in rats and in not requiring viral E1 region transforming genes for tumorigenicity. E4 codes for an oncoprotein essential for tumourigenesis by Ad9.
Probab=42.06 E-value=15 Score=17.08 Aligned_cols=20 Identities=35% Similarity=0.727 Sum_probs=9.9
Q ss_pred ECCHHHCCCHHHHHHHHHHH
Q ss_conf 62878877258999999999
Q gi|254781038|r 306 APPARLCTDNAVMIAWAALE 325 (363)
Q Consensus 306 ~P~~~~ctDNAaMIA~ag~~ 325 (363)
.|||..|-|-+.-|+|.|+.
T Consensus 6 LP~Ppv~rd~~~CI~WLGlA 25 (109)
T pfam05385 6 LPPPPVSRDQSSCIAWLGLA 25 (109)
T ss_pred CCCCCCCCCHHHHHHHHHHH
T ss_conf 99997534478889999999
No 164
>KOG1794 consensus
Probab=42.01 E-value=25 Score=15.49 Aligned_cols=289 Identities=17% Similarity=0.165 Sum_probs=122.4
Q ss_pred CCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CC
Q ss_conf 88468875026022077887338888418988731133462121871455999999996999999999983898224-53
Q gi|254781038|r 4 IKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISD-MD 82 (363)
Q Consensus 4 ~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~-id 82 (363)
++-++.|+|.-. ++|..++- |+++++++...--- ..| |.==.++.+ +.|..+|++++.+++++..+ +.
T Consensus 1 ~~~~y~GvEGga-T~s~~Viv--d~~~~~~~~a~~~~-Tnh--~~ig~~~~~-----~rie~~i~~A~~k~g~d~~~~lr 69 (336)
T KOG1794 1 LKDFYGGVEGGA-TCSRLVIV--DEDGTILGRAVGGG-TNH--WLIGSTTCA-----SRIEDMIREAKEKAGWDKKGPLR 69 (336)
T ss_pred CCCEEEEECCCC-CEEEEEEE--CCCCCEEEEEECCC-CCC--CCCCCHHHH-----HHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 974367531785-42489998--89988766751265-444--457846899-----99999999988663998457610
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHC--CC-----CCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCC
Q ss_conf 68740664301256779999999887514--86-----433303677653013225679984399970687479998375
Q gi|254781038|r 83 SIAVTAGPGLMGGLIVGLMTAKAISYVSH--KP-----FYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDV 155 (363)
Q Consensus 83 ~Iavt~gPG~~~~L~vG~~~Ak~la~~~~--~P-----li~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~ 155 (363)
.++++..-.--+ .+-+-|---+. -| ++=-+-..+-++++....+ -=++|+||--+.-.+....
T Consensus 70 ~lgL~lSg~d~e------~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t~g~~----~GiVLiaGTgs~crl~~~D 139 (336)
T KOG1794 70 SLGLGLSGTDQE------DKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAATPGGE----GGIVLIAGTGSNCRLVNPD 139 (336)
T ss_pred EEEEECCCCCCH------HHHHHHHHHHHHHCCCHHHEEEEEHHHHHHHHHCCCCCC----CCEEEEECCCCEEEEECCC
T ss_conf 145631467744------678899999988450231504661157778752487777----8679995378504888898
Q ss_pred CCCEECCCC---CCCCHHHHHHHHHHHCCCCCCH----HHH---HHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHH-HHH
Q ss_conf 643000223---3630023888898852887610----355---66655405733345861110688754221024-589
Q gi|254781038|r 156 AHYDRLGTT---IDDALGECFDKIAKSLGLPYPG----GVE---IEKAALMGDGKRFKFPCPLVQGTLCDFSFSGL-KTS 224 (363)
Q Consensus 156 ~~~~ilg~T---~Dda~Ge~~DK~ar~Lgl~yPg----Gp~---ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGL-kTa 224 (363)
+...--|.+ +-| =|-+|==..+.+-.=|-. ++. |+..-+. -.+.|.++-++-- ...-||-. |-.
T Consensus 140 Gs~~~~ggwg~~iGd-~GSaywia~~Avq~vfda~dg~e~~~~~i~~v~~t-if~~~~l~d~l~m---l~~~Ys~f~k~r 214 (336)
T KOG1794 140 GSEKGAGGWGHMIGD-GGSAYWIARQAVQMVFDAEDGFENMMDKIKDVKQT-IFKHFNLRDRLQM---LEHLYSDFDKHR 214 (336)
T ss_pred CCCCCCCCCCCCCCC-CCCHHHHHHHHHHHEEEHHCCCCCCCCHHHHHHHH-HHHHCCCCCHHHH---HHHHHHCCHHHH
T ss_conf 882679988774388-85200114533342022303743343317799999-9998089977888---778772601788
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEHHH-HHHHHHHHHHHHHHHHC-C
Q ss_conf 999998511201210688999999999999999999999998762144-55236541334-58799999999999868-9
Q gi|254781038|r 225 VQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPH-KQAVLVVSGGV-ASNHFIRASLIDLCVLH-G 301 (363)
Q Consensus 225 v~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~-~~~~lvv~GGV-aaN~~LR~~l~~~~~~~-~ 301 (363)
+..+.++.....+. -..+.++.-+-+.++|...+...+.++....+. ..-.+|++||| .+|+.|.+-+..-.... +
T Consensus 215 iA~f~~kla~~ae~-Gd~~~~~ifr~Ag~~Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~ 293 (336)
T KOG1794 215 IALFTEKLAEHAEI-GDPLSAEIFRNAGETLGRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTRG 293 (336)
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99989999852012-67889999999899999999999764690220367512999810665789999887887630367
Q ss_pred ---CEEEECCHHHCCCHHHHHHHHH
Q ss_conf ---8899628788772589999999
Q gi|254781038|r 302 ---FRFVAPPARLCTDNAVMIAWAA 323 (363)
Q Consensus 302 ---~~~~~P~~~~ctDNAaMIA~ag 323 (363)
++++-|... -|+.-|..|
T Consensus 294 f~~~~l~~~k~s----sAvgAA~la 314 (336)
T KOG1794 294 FERVELYRPKES----SAVGAAILA 314 (336)
T ss_pred CCCEEEEEECCC----CHHHHHHHH
T ss_conf 663389963365----057889976
No 165
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=41.70 E-value=25 Score=15.45 Aligned_cols=19 Identities=5% Similarity=-0.073 Sum_probs=14.6
Q ss_pred HHHHHHHHHHCCCCCCCCC
Q ss_conf 9999999998389822453
Q gi|254781038|r 64 DILIKQTLLRANMQISDMD 82 (363)
Q Consensus 64 ~~li~~~l~~a~~~~~~id 82 (363)
....+++|+++++...+++
T Consensus 16 l~aa~eAl~dAGl~~~~~~ 34 (332)
T cd00825 16 FEAAERAIADAGLSREYQK 34 (332)
T ss_pred HHHHHHHHHHCCCCHHHCC
T ss_conf 9999999997599934457
No 166
>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=41.69 E-value=25 Score=15.45 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9699999999998389822453
Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMD 82 (363)
Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id 82 (363)
+......++++.++++...+++
T Consensus 77 ~~~~~aa~~Al~dagl~~~~~~ 98 (425)
T PRK06501 77 ALARLAAEEALAQAGIGSGDFP 98 (425)
T ss_pred HHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999999999997498945566
No 167
>TIGR02418 acolac_catab acetolactate synthase, catabolic; InterPro: IPR012782 Acetolactate synthase is a thiamin pyrophosphate-dependent enzyme that combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. It exists in two distinct forms that have different properties, though they are clearly related , . The biosynthetic form, found in plants, fungi and bacteria, is involved in the biosynthesis of branched-chain amino acids and contains non-catalytic FAD. The catabolic form is found only in some bacteria, participates in butanediol fermentation, and does not contain FAD. This entry represents the catabolic form of acetolactate synthase, generally found in species that posses acetolactate decarboxylase, which is often encoded in the same operon. The enzyme is thought to be a homotetramer, though this has not conclusively been shown. Each monomer consists of three distinct domains, designated, starting from the N-terminus, as alpha, beta and gamma . The core of the alpha and gamma domains is a six-stranded parallel beta sheet surrounded by alpha helices, while the the beta domain forms a double Rossman fold. The thiamin pyrophosphate cofactor has an unusual conformation that has not been seen in other enzymes using this cofactor, including the biosynthetic form of acetolactate synthase. The active site is located in a funnel at the dimer interface, bordered by residues from all three domains.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding.
Probab=41.38 E-value=21 Score=15.92 Aligned_cols=52 Identities=29% Similarity=0.430 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 871455999999996999999999983898224536874066430125677999999
Q gi|254781038|r 48 GGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAK 104 (363)
Q Consensus 48 GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak 104 (363)
|--+|++..-.|.+|-..|-+-.=+=+|.. -..-||.|||- +.|-.|+.||-
T Consensus 38 GqkvP~lIv~RHEqNAaFMAqavGRlTGkp----GV~lvTSGPG~-sNL~TGl~TAn 89 (553)
T TIGR02418 38 GQKVPELIVVRHEQNAAFMAQAVGRLTGKP----GVALVTSGPGV-SNLVTGLLTAN 89 (553)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHCCCC----CEEEEECCCCH-HHHHHHHHEEC
T ss_conf 754761541322145899999986305998----65998068881-44674331015
No 168
>COG0188 GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair]
Probab=41.34 E-value=4.3 Score=20.74 Aligned_cols=116 Identities=19% Similarity=0.297 Sum_probs=75.6
Q ss_pred ECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE---
Q ss_conf 0260220778873388884189887311334621218---7145599999999699999999998389822453687---
Q gi|254781038|r 12 ETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYG---GVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIA--- 85 (363)
Q Consensus 12 ETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~G---Gv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Ia--- 85 (363)
|+|+|||=|-.-.+ +..+...++-|+-|| | -|-.|.|.-...|.++-.+.|.. +.-+.+|.+.
T Consensus 82 DssiYdalVRMAQd--------fs~RypLVdgqGNFGSiDg-D~aAAMRYTEaRLs~ia~elL~d--i~kdtVdf~~NyD 150 (804)
T COG0188 82 DSSIYDALVRMAQD--------FSLRYPLVDGQGNFGSIDG-DPAAAMRYTEARLSKIAEELLED--IDKDTVDFVPNYD 150 (804)
T ss_pred CHHHHHHHHHHHHH--------HHHCCCCEECCCCCCCCCC-CHHHHHHHHHHHCHHHHHHHHHC--CCCCEEECCCCCC
T ss_conf 16899999997104--------3415762316877889999-73787778886231989998744--4657051440799
Q ss_pred -----ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC----------------CCCCCCCCCEEEEE
Q ss_conf -----4066430125677999999988751486433303677653013----------------22567998439997
Q gi|254781038|r 86 -----VTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTAR----------------LTDDIAFPYLVLLV 142 (363)
Q Consensus 86 -----vt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~----------------l~~~~~~PfL~Llv 142 (363)
=+.=|..+|.|++.-+..-+..++.+|| .|=-+-+.-+. +...|.||-=+..+
T Consensus 151 g~~~EP~VLPa~~PnLLvNGssGIAVGmATnIP----PHNl~Ev~da~~~li~np~~~~~~lm~~i~GPDFPTgg~I~ 224 (804)
T COG0188 151 GSEKEPEVLPARFPNLLVNGSSGIAVGMATNIP----PHNLGEVIDALIALIDNPDATIDELMEIIKGPDFPTGGIII 224 (804)
T ss_pred CCCCCCCCCCCCCCEEEECCCCCEECCEECCCC----CCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEE
T ss_conf 985587403466870676068741012305779----98989999999999709997467773106999899866685
No 169
>PRK07491 consensus
Probab=41.23 E-value=25 Score=15.41 Aligned_cols=77 Identities=23% Similarity=0.325 Sum_probs=49.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC----CCCCH
Q ss_conf 62121871455999999996999999999983898224536874066430125677999999988751486----43330
Q gi|254781038|r 43 QHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKP----FYAIN 118 (363)
Q Consensus 43 ~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~P----li~Vn 118 (363)
..++|||-.... .-.+....+++++|++++++.++||.|.+..--. .+ -|.+.||..++.-++| -+-||
T Consensus 14 P~g~~~G~l~~~---~~~~L~~~~i~~~l~r~~l~~~~Id~Vi~G~v~~--~g--~g~n~aR~~~L~aGlp~~vp~~tVn 86 (392)
T PRK07491 14 AVGSFNGAFANT---PAHELGAVAIKAALERAGVDAADVSEVILGQVLT--AG--QGQNPARQASIKAGLPQESPAWGIN 86 (392)
T ss_pred CCCCCCCCCCCC---CHHHHHHHHHHHHHHHHCCCHHHCCEEEEEECCC--CC--CCCCHHHHHHHHCCCCCCCCEEEEE
T ss_conf 656799987999---9999999999999987197989989899994575--56--5561999999976989888648980
Q ss_pred HHHHHHHC
Q ss_conf 36776530
Q gi|254781038|r 119 HLEGHILT 126 (363)
Q Consensus 119 H~~aH~~~ 126 (363)
.+-+-=+.
T Consensus 87 r~C~SGl~ 94 (392)
T PRK07491 87 QLCGSGLR 94 (392)
T ss_pred CCCHHHHH
T ss_conf 60345778
No 170
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III; InterPro: IPR004655 Beta-ketoacyl-acyl carrier protein synthase III (FabH), in general, initiates elongation in type II fatty acid synthase systems found in bacteria and plants. It is responsible for producing the multitude of fatty acid structures found in bacterial membranes . The two members of this subfamily from Bacillus subtilis differ from each other, and from FabH from Escherichia coli, in acyl group specificity. Active site residues include Cys112, His244 and Asn274 of Escherichia coli FabH. Cys-112 is the site of acyl group attachment. ; GO: 0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity, 0006633 fatty acid biosynthetic process.
Probab=41.21 E-value=19 Score=16.32 Aligned_cols=239 Identities=19% Similarity=0.178 Sum_probs=116.7
Q ss_pred CCCCCCCCCCCHHH-HH-HHHHHHH-HHHHHHHHHCCCCCCCCCEEEEC-CCCCH--HHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 46212187145599-99-9999699-99999999838982245368740-66430--12567799999998875148643
Q gi|254781038|r 42 DQHGHYGGVVPEVA-AR-AHVDVLD-ILIKQTLLRANMQISDMDSIAVT-AGPGL--MGGLIVGLMTAKAISYVSHKPFY 115 (363)
Q Consensus 42 ~~~~~~GGv~P~~A-~~-~H~~~l~-~li~~~l~~a~~~~~~id~Iavt-~gPG~--~~~L~vG~~~Ak~la~~~~~Pli 115 (363)
+....+-||..+-- +. +....|. .--++++++|+++.+|||.|-|+ .-|-+ ||+ .|-.+.-.||+.=+
T Consensus 31 EWI~TRTGI~eRRiAad~E~~S~mg~~AA~~Aie~A~i~~~dID~iivaT~~pd~l~fPS------~Ac~~~~~LGi~~~ 104 (329)
T TIGR00747 31 EWIVTRTGIKERRIAADDETSSHMGFEAAKKAIENAGISKDDIDLIIVATTTPDYLAFPS------AACMVQAYLGIKNI 104 (329)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCC------HHHHHHHHCCCCCC
T ss_conf 311236861000214720126899999999999852788668786798057800003778------58999976186676
Q ss_pred CCHHHHH----HHHCCCCCCCCCCCCEEEEEECCCEEEEEEC-----CCCCC---------------EECCCCCCCCHHH
Q ss_conf 3303677----6530132256799843999706874799983-----75643---------------0002233630023
Q gi|254781038|r 116 AINHLEG----HILTARLTDDIAFPYLVLLVSGGHTQILLVR-----DVAHY---------------DRLGTTIDDALGE 171 (363)
Q Consensus 116 ~VnH~~a----H~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~-----~~~~~---------------~ilg~T~Dda~Ge 171 (363)
+==-++| -+|.--.-. .+..||.--.++++- +..|+ -|||+|.|+
T Consensus 105 ~aFD~~AACaGF~Y~Ls~A~-------~~i~SG~y~~vLvvGaeklSs~~D~~DR~TcvLFGDGAgA~v~g~s~~~---- 173 (329)
T TIGR00747 105 PAFDLSAACAGFIYGLSVAK-------QYIESGKYKTVLVVGAEKLSSTLDWTDRGTCVLFGDGAGAVVVGESEDD---- 173 (329)
T ss_pred CCCCHHHHHHHHHHHHHHHH-------HHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEEECCCCC----
T ss_conf 32223656766899999999-------9861577026889985110553674668757996067226887045787----
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCCCC---CCCCCHHCCCCCCCCCCCHHH-HHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 888898852887610355666554057333---458611106887542210245-8999999851120121068899999
Q gi|254781038|r 172 CFDKIAKSLGLPYPGGVEIEKAALMGDGKR---FKFPCPLVQGTLCDFSFSGLK-TSVQKTICAFDVLEKQDIADICASF 247 (363)
Q Consensus 172 ~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~---~~~P~p~~~~~~~dFSFSGLk-Tav~~~i~~~~~~~~~~~~diaasf 247 (363)
|+-+|-..-...|++. ..+|.+... |=|+ +=+ ..-..++ .++-+++..+|..-
T Consensus 174 --------------~~~eI~~~~l~AdG~~~~~L~l~~~~~~---~P~~--~~~~~~~~~f~----~M~G~evFk~Av~~ 230 (329)
T TIGR00747 174 --------------GGLEIISTNLGADGTQGELLYLPAGGRR---CPFS--KNTLQGSSPFI----TMEGNEVFKHAVRK 230 (329)
T ss_pred --------------CCCEEEEEEEECCCCCCCEEEECCCCCC---CCCC--CCCCCCCCCEE----EECCCCHHHHHHHH
T ss_conf --------------7630123465305644321320677766---8877--77344666617----87373258899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHH-HCCCHHHHHHHHHHHH
Q ss_conf 999999999999999999876214455236541334587999999999998689889962878-8772589999999999
Q gi|254781038|r 248 QVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPAR-LCTDNAVMIAWAALER 326 (363)
Q Consensus 248 Q~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~-~ctDNAaMIA~ag~~~ 326 (363)
.. +..+..|..- ...+..+.-||= ==||.+|-+.+.+.++-..=+++..--+ |--==||=|..|=-|.
T Consensus 231 m~-------~~~~~~l~~a-~l~~~DiD~lvP---HQAN~RIi~a~ak~L~~~~~~Vv~Tv~khyGNTSAASiP~AL~E~ 299 (329)
T TIGR00747 231 ML-------KVVEETLEAA-GLSKEDIDWLVP---HQANIRIIEALAKRLELKESKVVKTVHKHYGNTSAASIPIALDEL 299 (329)
T ss_pred HH-------HHHHHHHHHH-CCCHHHCCEECC---CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99-------9999999971-878304615555---411168999999970898031686320013463043466789998
Q ss_pred HHCCC
Q ss_conf 98499
Q gi|254781038|r 327 MEAGL 331 (363)
Q Consensus 327 ~~~g~ 331 (363)
++.|.
T Consensus 300 ~~~G~ 304 (329)
T TIGR00747 300 LETGR 304 (329)
T ss_pred HHCCC
T ss_conf 74177
No 171
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=41.06 E-value=18 Score=16.46 Aligned_cols=80 Identities=23% Similarity=0.320 Sum_probs=41.9
Q ss_pred CCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 84688750260220778873388884189887311334621218714559999999969999999999838982245368
Q gi|254781038|r 5 KKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSI 84 (363)
Q Consensus 5 ~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~I 84 (363)
.++|.|=|-.=---||||+... .++.....-...+.. . .-..-.|.+.+- |.+||+-+
T Consensus 100 D~YVIGQe~AKKVLsVAVYNHY---KRl~~~~~n~~~d~~-D------~nvelehleeVE------L~KSNILL------ 157 (452)
T TIGR00382 100 DEYVIGQEQAKKVLSVAVYNHY---KRLNLKEKNKKSDNG-D------SNVELEHLEEVE------LSKSNILL------ 157 (452)
T ss_pred CCCCCCCCCCCEEEEEEEHHHH---HHHHHHHHCCCCCCC-C------CHHHHHHHHHHH------HHCCCEEE------
T ss_conf 1361231010525432411246---665324304555884-0------002354444433------30066245------
Q ss_pred EECCCC-CHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 740664-301256779999999887514864
Q gi|254781038|r 85 AVTAGP-GLMGGLIVGLMTAKAISYVSHKPF 114 (363)
Q Consensus 85 avt~gP-G~~~~L~vG~~~Ak~la~~~~~Pl 114 (363)
+|| |++--| .|++||..+++|+
T Consensus 158 ---iGPTGSGKTL-----LAqTLA~~L~VPf 180 (452)
T TIGR00382 158 ---IGPTGSGKTL-----LAQTLARILNVPF 180 (452)
T ss_pred ---ECCCCCCHHH-----HHHHHHHHCCCCE
T ss_conf ---4688852689-----9999998738874
No 172
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=40.91 E-value=26 Score=15.37 Aligned_cols=49 Identities=27% Similarity=0.356 Sum_probs=31.5
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHCCCC
Q ss_conf 45368740664301256779999999887514864333---036776530132
Q gi|254781038|r 80 DMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAI---NHLEGHILTARL 129 (363)
Q Consensus 80 ~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~V---nH~~aH~~~~~l 129 (363)
+.|+|-.+-|||............+.+ +..++|++|| |.+-++.+-+.+
T Consensus 39 ~p~giIlS~GPg~p~~~~~~~~~~~~~-~~~~iPILGIClG~Q~ia~~~Gg~v 90 (178)
T cd01744 39 DPDGIFLSNGPGDPALLDEAIKTVRKL-LGKKIPIFGICLGHQLLALALGAKT 90 (178)
T ss_pred CCCEEEECCCCCCHHHHCCHHHHHHHH-HHCCCCEEEECHHHHHHHHHCCCCC
T ss_conf 999799899999957734449999999-7469988998121788998819830
No 173
>PRK07058 acetate kinase; Provisional
Probab=40.88 E-value=26 Score=15.37 Aligned_cols=53 Identities=15% Similarity=0.265 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHH-HHHHHHHHHHHHCCCEE
Q ss_conf 9999999999999998762144552365413345879-99999999998689889
Q gi|254781038|r 251 VVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNH-FIRASLIDLCVLHGFRF 304 (363)
Q Consensus 251 i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~-~LR~~l~~~~~~~~~~~ 304 (363)
++++.+.++.+.+-.+-... .++..||+.||+.-|+ .+|+++-+-++-.|+++
T Consensus 297 A~d~f~~ri~k~IGay~a~L-gglDalVFTgGIGEns~~iR~~v~~~L~~lGi~l 350 (393)
T PRK07058 297 ALDLFALRIAGEIARLAATL-GGLDALVFTAGIGEHQPEIRAAVCKRLAWLGVEL 350 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHH-CCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 99999999999999999874-8999999878546688999999984313429257
No 174
>pfam08751 TrwC TrwC relaxase. Relaxases are DNA strand transferases which function during the conjugative cell to cell DNA transfer. TrwC binds to the origin of transfer (oriT) and melts the double helix.
Probab=40.78 E-value=26 Score=15.36 Aligned_cols=87 Identities=17% Similarity=0.132 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHCCCCCCHHHH-----HHHHHHHCCCCCCCCCCHH----CCCCCCCCCCCHHHH-HHHHHHHHHCCC
Q ss_conf 630023888898852887610355-----6665540573334586111----068875422102458-999999851120
Q gi|254781038|r 166 DDALGECFDKIAKSLGLPYPGGVE-----IEKAALMGDGKRFKFPCPL----VQGTLCDFSFSGLKT-SVQKTICAFDVL 235 (363)
Q Consensus 166 Dda~Ge~~DK~ar~Lgl~yPgGp~-----ie~~A~~g~~~~~~~P~p~----~~~~~~dFSFSGLkT-av~~~i~~~~~~ 235 (363)
+...|+-+-|.|..|||. |+. ++++...-.|+--.+-.+. ....++||-||=.|+ +++-.+.
T Consensus 23 ~~~~g~W~G~gA~~LGL~---G~v~~~~~f~~ll~G~~P~g~~l~~~~~~~~~~r~G~DlTFsaPKSvSil~~~~----- 94 (288)
T pfam08751 23 GEPAGRWQGKGAEELGLA---GAVVEGAQLAALLDGRLPDGEALGRAAGKRADHRPGFDLTFSAPKSVSLLALVG----- 94 (288)
T ss_pred CCCCCEEECHHHHHCCCC---CCCCCHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHC-----
T ss_conf 999975553768972999---975679999999669899963000366777672021445872795099999955-----
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12106889999999999999999999
Q gi|254781038|r 236 EKQDIADICASFQVTVVRILQARLKQ 261 (363)
Q Consensus 236 ~~~~~~diaasfQ~~i~~~L~~k~~~ 261 (363)
+++....|-.+++++|-+.|.. +++
T Consensus 95 ~d~~~~~i~~Ah~~AV~~al~~-lE~ 119 (288)
T pfam08751 95 GDETKERLIEAHDRAVAAALEY-LEK 119 (288)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHH
T ss_conf 9378999999999999999999-999
No 175
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=40.67 E-value=26 Score=15.35 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=28.3
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHH
Q ss_conf 552365413345879999999999986898899628788
Q gi|254781038|r 273 KQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARL 311 (363)
Q Consensus 273 ~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ 311 (363)
++.. ++.|.+.+ .+.|+++++.|++.|+..++|-=..
T Consensus 88 gi~~-vv~GdI~s-~~qr~~~e~~c~~lgl~~~~PLW~~ 124 (194)
T cd01994 88 GVDA-VVFGAILS-EYQRTRVERVCERLGLEPLAPLWGR 124 (194)
T ss_pred CCCE-EEECCCCC-HHHHHHHHHHHHHCCCEEECHHCCC
T ss_conf 9959-99996332-8899999999997398887001079
No 176
>pfam00195 Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain. The C-terminal domain of Chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in this N-terminal domain.
Probab=40.53 E-value=26 Score=15.33 Aligned_cols=56 Identities=9% Similarity=0.056 Sum_probs=36.9
Q ss_pred HHHHHHHHHHCCCCCCCCCEEEECCCCCH-HHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 99999999983898224536874066430-12567799999998875148643330367
Q gi|254781038|r 64 DILIKQTLLRANMQISDMDSIAVTAGPGL-MGGLIVGLMTAKAISYVSHKPFYAINHLE 121 (363)
Q Consensus 64 ~~li~~~l~~a~~~~~~id~Iavt~gPG~-~~~L~vG~~~Ak~la~~~~~Pli~VnH~~ 121 (363)
....+++|.++|+..+||+.+.+..-.|+ .|++ -...++.|.+..++--++++.|=
T Consensus 107 ~~Aa~~AL~~aG~~~~dIthlv~vt~TG~~~Pg~--d~~l~~~LGL~~~v~R~~i~~~G 163 (228)
T pfam00195 107 KEAALKAIKEWGQPKSKITHLVFCTTSGVDMPGA--DYQLTKLLGLRPSVKRVMLYQQG 163 (228)
T ss_pred HHHHHHHHHHHCCCHHHCCEEEEECCCCCCCCCH--HHHHHHHCCCCCCCHHEEEECCC
T ss_conf 9999999999588988999999994799988747--89999982989872111411454
No 177
>TIGR02712 urea_carbox urea carboxylase; InterPro: IPR014084 Members of this family are ATP-dependent urea carboxylases, including characterised members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae (Baker's yeast). The allophanate hydrolase domain of the yeast enzyme is not included in this entry and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from O. sagaranensis was shown to be highly active on acetamide and formamide as well as urea..
Probab=40.44 E-value=26 Score=15.32 Aligned_cols=84 Identities=19% Similarity=0.271 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-CCCCCCCEEEEEE--CCCEEEEEECCCCCCEECCCCCCCCHHHHHHHH
Q ss_conf 9999998875148643330367765301322-5679984399970--687479998375643000223363002388889
Q gi|254781038|r 100 LMTAKAISYVSHKPFYAINHLEGHILTARLT-DDIAFPYLVLLVS--GGHTQILLVRDVAHYDRLGTTIDDALGECFDKI 176 (363)
Q Consensus 100 ~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~-~~~~~PfL~LlvS--GGhT~l~~~~~~~~~~ilg~T~Dda~Ge~~DK~ 176 (363)
--+||.||.+.++||+|=.-+-.++..+.-. +++.|| +-|=-+ ||===|=.|++. .-.-++|+.|
T Consensus 115 KHtAR~lA~~aGVPL~PGTgLL~sl~eA~~~A~~IGYP-VMlKSTAGGGGIGl~~c~~~-----------~eL~~aFe~V 182 (1226)
T TIGR02712 115 KHTARELAEAAGVPLLPGTGLLESLDEALEAAKEIGYP-VMLKSTAGGGGIGLQKCDNA-----------AELAEAFETV 182 (1226)
T ss_pred CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCCH-----------HHHHHHHHHH
T ss_conf 25689999966889888515587799999998646995-47987078765245111898-----------9999999998
Q ss_pred HHHCCCCC-CHHHHHHHHHH
Q ss_conf 88528876-10355666554
Q gi|254781038|r 177 AKSLGLPY-PGGVEIEKAAL 195 (363)
Q Consensus 177 ar~Lgl~y-PgGp~ie~~A~ 195 (363)
=|+=.--| -+|--||++=.
T Consensus 183 krlg~~~F~daGVFlErfv~ 202 (1226)
T TIGR02712 183 KRLGESFFGDAGVFLERFVE 202 (1226)
T ss_pred HHHHHHCCCCCCEEHHHHHC
T ss_conf 99886323635143403203
No 178
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=40.23 E-value=26 Score=15.30 Aligned_cols=31 Identities=29% Similarity=0.536 Sum_probs=23.8
Q ss_pred EEEEHHHHHHHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 65413345879999999999986898899628
Q gi|254781038|r 277 LVVSGGVASNHFIRASLIDLCVLHGFRFVAPP 308 (363)
Q Consensus 277 lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~ 308 (363)
-+++|.|++ .|=+++++.+|++-|++.+.|-
T Consensus 89 ~iv~GaI~s-~yqk~rve~lc~~lGl~~~~PL 119 (223)
T COG2102 89 GIVAGAIAS-EYQKERVERLCEELGLKVYAPL 119 (223)
T ss_pred EEEECHHHH-HHHHHHHHHHHHHHCCEEEECC
T ss_conf 799734330-9999999999997297885125
No 179
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=39.43 E-value=27 Score=15.22 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCC
Q ss_conf 45599999999699999999998389822453687406643
Q gi|254781038|r 51 VPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPG 91 (363)
Q Consensus 51 ~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG 91 (363)
..+.+.+.. +....+.+++++.++..-.+.+.+.+..|=+
T Consensus 76 ~~~~~~~~~-~~~~~~~~~a~edaG~~~~~~~r~gv~vg~~ 115 (418)
T PRK07910 76 ELRRLSYLQ-RMSTVLGRRVWENAGSPEVDTNRLMVSIGTG 115 (418)
T ss_pred CHHHHHHHH-HHHHHHHHHHHHHCCCCCCCHHHCEEEEEEE
T ss_conf 687635999-9999999999997799988822501798873
No 180
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=39.34 E-value=27 Score=15.21 Aligned_cols=100 Identities=20% Similarity=0.178 Sum_probs=60.8
Q ss_pred EECCCCCCCCCCC-CC--CHHHHHHHHHHHHHHHHHHHHHCCC-CCC---CCCEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3113346212187-14--5599999999699999999998389-822---453687406643012567799999998875
Q gi|254781038|r 37 VLSQIDQHGHYGG-VV--PEVAARAHVDVLDILIKQTLLRANM-QIS---DMDSIAVTAGPGLMGGLIVGLMTAKAISYV 109 (363)
Q Consensus 37 ~~sq~~~~~~~GG-v~--P~~A~~~H~~~l~~li~~~l~~a~~-~~~---~id~Iavt~gPG~~~~L~vG~~~Ak~la~~ 109 (363)
+...++-|+.||. +- |..|.|.-.-.|.++..+.|.+.+. ++. |=+..--+.=|..+|.|++.-+..-+..++
T Consensus 82 r~~LvdgqGNfGs~~dgd~~AAmRYtE~rls~~a~~~l~~~dtv~f~~NyDgs~~EP~vLPa~~PnLLvNGs~GIAVGmA 161 (479)
T PRK09630 82 KGYLIDTQGNFGNPLTGDPHAAARYIEARLSPLAKEVLFNTDLMTFHDSYDGREKEPDILPAKLPLLLLHGVDGIAVGMT 161 (479)
T ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCHHHHHH
T ss_conf 76156467888999899804677899987589999983556854677898998557712114571877547752223455
Q ss_pred HCCCCCCCHHHH-H---HHHCCCCCCCCCCC
Q ss_conf 148643330367-7---65301322567998
Q gi|254781038|r 110 SHKPFYAINHLE-G---HILTARLTDDIAFP 136 (363)
Q Consensus 110 ~~~Pli~VnH~~-a---H~~~~~l~~~~~~P 136 (363)
.++|=.-.+-+. | .+--+-+...|.||
T Consensus 162 T~IpPHNl~EvidA~i~~i~~~~~~~~PDFP 192 (479)
T PRK09630 162 TKIFPHNFCELLEAQIAILNDQPFTLLPDFP 192 (479)
T ss_pred HCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 2589989899999999976289877589999
No 181
>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
Probab=39.11 E-value=11 Score=18.00 Aligned_cols=150 Identities=18% Similarity=0.157 Sum_probs=85.9
Q ss_pred HEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH-----HHHHHHCCCCCCCCCEEEECCCCCH
Q ss_conf 07788733888841898873113346212187145599999999699999-----9999983898224536874066430
Q gi|254781038|r 18 TAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILI-----KQTLLRANMQISDMDSIAVTAGPGL 92 (363)
Q Consensus 18 tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li-----~~~l~~a~~~~~~id~Iavt~gPG~ 92 (363)
.|+|++--++.+++|++.+..-..-.....|=|-=..|-|+--..|-|.| ++.|-....-+.|.-.-=-...|+.
T Consensus 294 ~saAvlvvD~~t~eVla~VGS~d~fd~~r~G~idm~~a~RSPGStLKPFiY~LA~D~GLI~p~Tll~D~P~~fg~YrP~N 373 (733)
T COG4953 294 NSAAVLVVDNRTMEVLAYVGSADFFDASRSGHIDMVRALRSPGSTLKPFVYGLAFDQGLIHPETLLKDVPTRFGDYRPEN 373 (733)
T ss_pred CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 64269999657740578842545567321363431133038853000366554301465465311467870106758866
Q ss_pred HHH-HHHHHHHHHHHHHHHCCCCCCCHHHHHH-HHCCCCCC-------CCCC-CCEEEEEECCCEEEEEE-------CCC
Q ss_conf 125-6779999999887514864333036776-53013225-------6799-84399970687479998-------375
Q gi|254781038|r 93 MGG-LIVGLMTAKAISYVSHKPFYAINHLEGH-ILTARLTD-------DIAF-PYLVLLVSGGHTQILLV-------RDV 155 (363)
Q Consensus 93 ~~~-L~vG~~~Ak~la~~~~~Pli~VnH~~aH-~~~~~l~~-------~~~~-PfL~LlvSGGhT~l~~~-------~~~ 155 (363)
|.+ +.=.+++..+|..++|+|.|-+=-..+- -+..+|.+ +..+ |=|+|..-|+--.+.-. -+.
T Consensus 374 fd~~F~G~VsvreAL~~SLNiPAV~lLe~~gp~rf~~rl~~ag~~L~~P~~~~~GLsLiLGg~gi~L~dLa~lYa~lAn~ 453 (733)
T COG4953 374 FDSNFHGPVSVREALIKSLNIPAVRLLEAVGPPRFAARLRQAGVHLYLPEGAAPGLSLILGGAGITLEDLAQLYAALANQ 453 (733)
T ss_pred CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 66556674009999987438629999987393989999996799877897668872588557766499999999998618
Q ss_pred CCCEECCCCCCC
Q ss_conf 643000223363
Q gi|254781038|r 156 AHYDRLGTTIDD 167 (363)
Q Consensus 156 ~~~~ilg~T~Dd 167 (363)
++...|..|+|+
T Consensus 454 G~~~~L~~~~~~ 465 (733)
T COG4953 454 GKAGPLRDTLDD 465 (733)
T ss_pred CCEECCCCCCCC
T ss_conf 943104346787
No 182
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=39.06 E-value=20 Score=16.16 Aligned_cols=91 Identities=18% Similarity=0.057 Sum_probs=36.6
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 22453687406643012567799999998875148643330367765301322567998439997068747999837564
Q gi|254781038|r 78 ISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAH 157 (363)
Q Consensus 78 ~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~ 157 (363)
...|+...||..=|-.+ .+|++|-. .++-.+.-.-...-+-. -....+.| -.|+=|=-++++--+-...|
T Consensus 26 ~~gI~~~~vtK~~~g~~------~iae~l~~-~Gi~~iaesr~~n~~~l--r~~g~~~~-~~Llr~P~~sei~~vv~~~D 95 (353)
T COG3457 26 RYGIELYGVTKQFGGDP------FIAEALLA-LGIEGIAESRIDNAIRL--REAGCTIP-GHLLRSPCMSEIEDVVRKVD 95 (353)
T ss_pred HCCCEEEEEEEECCCCH------HHHHHHHH-CCCCEEEEHHHHHHHHH--HHCCCCCC-CEEEECCCHHHHHHHHHHCC
T ss_conf 73977999875205881------89999996-58543430227889999--97599967-54762652889999987357
Q ss_pred CEECCCCCCCCHHHHHHHHHHHCC
Q ss_conf 300022336300238888988528
Q gi|254781038|r 158 YDRLGTTIDDALGECFDKIAKSLG 181 (363)
Q Consensus 158 ~~ilg~T~Dda~Ge~~DK~ar~Lg 181 (363)
+.+ -.++| .=..++..|+.+|
T Consensus 96 vs~-~sel~--~arqlse~A~~~G 116 (353)
T COG3457 96 VST-VSELD--TARQLSEAAVRMG 116 (353)
T ss_pred EEE-EECHH--HHHHHHHHHHHHC
T ss_conf 689-72589--9999999999827
No 183
>PRK09268 acetyl-CoA acetyltransferase; Provisional
Probab=38.87 E-value=28 Score=15.16 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=49.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCC----CCCCCH
Q ss_conf 6212187145599999999699999999998389822453687406643012567799999998875148----643330
Q gi|254781038|r 43 QHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHK----PFYAIN 118 (363)
Q Consensus 43 ~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~----Pli~Vn 118 (363)
..++|||-.-.+- =.+....++++++++++++.++||.|-+..-..-.. |.+.||..++.-++ |-+-||
T Consensus 18 P~g~~~G~l~~~~---~~~L~~~~i~~~l~r~gi~~~~iD~vi~G~v~~~g~----~~n~aR~~aL~aGlp~~vp~~TVn 90 (428)
T PRK09268 18 PFARSNGAYADAS---NQDMLTAALDGLVERFGLHGERLGEVVAGAVLKHSR----DFNLTRECVLGSALSPETPAYDLQ 90 (428)
T ss_pred CCCCCCCCCCCCC---HHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCC----CCHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 3427898878898---899999999999998299989999899993576565----653999999966989888726885
Q ss_pred HHHHHHHC
Q ss_conf 36776530
Q gi|254781038|r 119 HLEGHILT 126 (363)
Q Consensus 119 H~~aH~~~ 126 (363)
.+-+-=+.
T Consensus 91 r~C~SGl~ 98 (428)
T PRK09268 91 QACGTGLE 98 (428)
T ss_pred HHHHHHHH
T ss_conf 27579999
No 184
>pfam02803 Thiolase_C Thiolase, C-terminal domain. Thiolase is reported to be structurally related to beta-ketoacyl synthase (pfam00109), and also chalcone synthase.
Probab=38.86 E-value=25 Score=15.44 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEC
Q ss_conf 69999999999838982245368740
Q gi|254781038|r 62 VLDILIKQTLLRANMQISDMDSIAVT 87 (363)
Q Consensus 62 ~l~~li~~~l~~a~~~~~~id~Iavt 87 (363)
--.+.++++|++++++++|+|.+=+.
T Consensus 23 ap~~A~~~lL~r~gl~~~Did~~Ein 48 (123)
T pfam02803 23 GPAYAIPKALKKAGLTVNDIDLFEIN 48 (123)
T ss_pred CHHHHHHHHHHHCCCCHHHCCEEEEC
T ss_conf 69999999999829985546645641
No 185
>pfam02801 Ketoacyl-synt_C Beta-ketoacyl synthase, C-terminal domain. The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=38.74 E-value=28 Score=15.15 Aligned_cols=65 Identities=18% Similarity=0.174 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHH-HHHHHHHHHHH-HCCCCCCCHHHHHHHHCC
Q ss_conf 6999999999983898224536874066430125677-99999998875-148643330367765301
Q gi|254781038|r 62 VLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIV-GLMTAKAISYV-SHKPFYAINHLEGHILTA 127 (363)
Q Consensus 62 ~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~v-G~~~Ak~la~~-~~~Pli~VnH~~aH~~~~ 127 (363)
-...+++++|++++++.+|||.|-.- |.|-.-+=.+ -....+.+.-. -.+|+-.+--+.||.+.+
T Consensus 26 ~~~~~i~~Al~~agi~p~~I~~i~aH-gtgT~~gD~~E~~ai~~~f~~~~~~~~i~S~Ks~~GH~~~A 92 (117)
T pfam02801 26 AQARAIRAALADAGLDPEDVDYVEAH-GTGTPLGDPIEAEALKAVFGPGRRPLPVGSVKSNIGHLEAA 92 (117)
T ss_pred HHHHHHHHHHHHHCCCHHHCCEEEEE-CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 99999999999909899897989875-37685437999999999966377887677741153556376
No 186
>PRK06840 hypothetical protein; Validated
Probab=38.72 E-value=28 Score=15.15 Aligned_cols=56 Identities=11% Similarity=0.027 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEE-E-CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 699999999998389822453687-4-066430125677999999988751486433303
Q gi|254781038|r 62 VLDILIKQTLLRANMQISDMDSIA-V-TAGPGLMGGLIVGLMTAKAISYVSHKPFYAINH 119 (363)
Q Consensus 62 ~l~~li~~~l~~a~~~~~~id~Ia-v-t~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH 119 (363)
.-....+++|++++++..|||+|- + |..|.+.. -....-.+..|.. .+.+.+-||.
T Consensus 56 ma~~Aa~~aL~~ag~~~~dIdliI~~~t~~~d~~~-ps~A~~vq~~LG~-~~a~afDi~~ 113 (337)
T PRK06840 56 MAIAAAKPALKQAGIDPEAIDLVIYIGEEHKDYPV-WTAAPKIQHEIGA-KNAWAFDIMA 113 (337)
T ss_pred HHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCC-CHHHHHHHHHHCC-CCCEEEEHHH
T ss_conf 99999999999749896788789999368989788-4199999998589-9960787133
No 187
>PRK05656 acetyl-CoA acetyltransferase; Provisional
Probab=38.71 E-value=28 Score=15.15 Aligned_cols=140 Identities=18% Similarity=0.222 Sum_probs=72.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHC----CCCCCCH
Q ss_conf 621218714559999999969999999999838982245368740664301256779999999887514----8643330
Q gi|254781038|r 43 QHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSH----KPFYAIN 118 (363)
Q Consensus 43 ~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~----~Pli~Vn 118 (363)
..++|+|-.-.. .=.+....+++++|++++++.++||.|-+..--.-. .|.+.||..++..+ +|-+-||
T Consensus 13 P~g~~~G~l~~~---~~~~L~a~~i~~~l~r~~i~p~~Id~Vi~G~v~~~g----~g~n~aR~~aL~aGlp~~vp~~tVn 85 (392)
T PRK05656 13 AIGSFQGSLANI---PAVDLGAAVIRQLLEQTGLDPAQVDEVILGQVLTAG----AGQNPARQAAIKAGLPHSVPAMTLN 85 (392)
T ss_pred CCCCCCCCCCCC---CHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCC----CCCCHHHHHHHHCCCCCCCCEEEEE
T ss_conf 434789877899---889999999999999839998998989999047656----6663999999977999888648985
Q ss_pred HHHHHHHCCCC-------------------CCCCCCCCEEEEE----ECCCEEEEEECCC-CCCEECCCCCCCCHHHHHH
Q ss_conf 36776530132-------------------2567998439997----0687479998375-6430002233630023888
Q gi|254781038|r 119 HLEGHILTARL-------------------TDDIAFPYLVLLV----SGGHTQILLVRDV-AHYDRLGTTIDDALGECFD 174 (363)
Q Consensus 119 H~~aH~~~~~l-------------------~~~~~~PfL~Llv----SGGhT~l~~~~~~-~~~~ilg~T~Dda~Ge~~D 174 (363)
.+-+==+.+.. ++.-.-||..--. .-|+.++.-..-. .-+. ..-|..-|+.=+
T Consensus 86 r~C~SGl~Ai~~Aa~~I~~G~~dv~iagGvEsmS~~P~~~~~~~~~~~~~~~~~~~~~~~~~l~d---~~~~~~Mg~tAE 162 (392)
T PRK05656 86 KVCGSGLKALHLAAQAIRCGDAEVIIAGGQENMSLAPYVMPGARTGLRMGHAQLVDSMITDGLWD---AFNDYHMGITAE 162 (392)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCHHHHHH
T ss_conf 25367789999999998669975789834333678864465554443346664465412355645---457874889999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH
Q ss_conf 898852887610355666554
Q gi|254781038|r 175 KIAKSLGLPYPGGVEIEKAAL 195 (363)
Q Consensus 175 K~ar~Lgl~yPgGp~ie~~A~ 195 (363)
++|+..|+. -...|++|.
T Consensus 163 ~~A~~~gIs---Re~qD~~A~ 180 (392)
T PRK05656 163 NLVEKYGIS---REAQDAFAA 180 (392)
T ss_pred HHHHHHCCC---HHHHHHHHH
T ss_conf 999996999---999999999
No 188
>pfam04312 DUF460 Protein of unknown function (DUF460). Archaeal protein of unknown function.
Probab=38.18 E-value=28 Score=15.09 Aligned_cols=28 Identities=29% Similarity=0.552 Sum_probs=21.1
Q ss_pred CCCEEEEEECCCHHHEEEEEECCCCCCEEEEE
Q ss_conf 88468875026022077887338888418988
Q gi|254781038|r 4 IKKTVIGIETSCDETAVAVVRRKDSHGEILAE 35 (363)
Q Consensus 4 ~~~~ILgIETScd~tsvaiv~~~~~~~~il~~ 35 (363)
.+.+|.|||.-. +|++|++ |-+|+++.-
T Consensus 30 r~~lIVGIDPG~-ttgiAil---dLdG~~l~~ 57 (138)
T pfam04312 30 RRYLIVGIDPGI-TTGIAIL---DLDGEVLDL 57 (138)
T ss_pred CCCEEEEECCCC-EEEEEEE---ECCCCEEEE
T ss_conf 676799978991-4378898---258849987
No 189
>PRK06363 consensus
Probab=37.99 E-value=28 Score=15.07 Aligned_cols=63 Identities=16% Similarity=0.096 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCC-CHHH-HHHHHHHHHHHHHHHH-CCCCCCCHHHHH
Q ss_conf 9969999999999838982245368740664-3012-5677999999988751-486433303677
Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMDSIAVTAGP-GLMG-GLIVGLMTAKAISYVS-HKPFYAINHLEG 122 (363)
Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id~Iavt~gP-G~~~-~L~vG~~~Ak~la~~~-~~Pli~VnH~~a 122 (363)
.+.....+..+|+.++++..|||.+.+..-. |.+. .-.++...|..+.+.. .+|...||-.-+
T Consensus 23 ~~L~~ea~~~Al~dAgl~~~dID~v~~g~~~~~~~~~~~~~~~~~a~~~Gl~~~~vp~~~v~~~C~ 88 (387)
T PRK06363 23 RDLIVEAGIKAIEDANVSGEDIDAMYVGNMSGGRFVGQEHIGALIADYAGLNTLPIPATRVEAACA 88 (387)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCHHH
T ss_conf 999999999999980979899999999825754344613099999997399888765488866317
No 190
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=37.64 E-value=29 Score=15.04 Aligned_cols=211 Identities=20% Similarity=0.256 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC--------
Q ss_conf 999969999999999838982245368740664301256779999999887514864333036776530132--------
Q gi|254781038|r 58 AHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARL-------- 129 (363)
Q Consensus 58 ~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l-------- 129 (363)
+-.+.+..++++--+ .-...+..||..-|- .-|---++.-+++.++..|-||.-+.--.+
T Consensus 54 ~~ve~l~~li~~h~k---~C~~~~~liatGGga---------~kfyd~m~~~~~ikv~r~~eme~li~gl~~fv~~IP~e 121 (342)
T COG5146 54 QVVEWLNNLIQQHEK---LCLTKITLIATGGGA---------YKFYDRMSKQLDIKVIRENEMEILINGLNYFVINIPAE 121 (342)
T ss_pred HHHHHHHHHHHHHHH---HHHHEEEEEECCCCC---------HHHHHHHHHHCCCEEEECCHHHHHHHCCCCEEEECCHH
T ss_conf 999999999999986---442103687317851---------10577776531400231202777771533102426678
Q ss_pred --C--------------CC--CCCCCEEEEEECCCEEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHCCCCC---CH--
Q ss_conf --2--------------56--7998439997068747999837564300022336300238888988528876---10--
Q gi|254781038|r 130 --T--------------DD--IAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAKSLGLPY---PG-- 186 (363)
Q Consensus 130 --~--------------~~--~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~y---Pg-- 186 (363)
. +. --+|++-+-+--|.+ |+.+.+..+++.+|.+--- | +-+-||.+ |+
T Consensus 122 vFv~~d~~~e~~~~~~~~~~h~lypyilvNiGsGvS-ilkvtgpsqf~RvGGsslG--G------GtlwGLlsLlt~a~~ 192 (342)
T COG5146 122 VFVEFDAASEGLGILLKEQGHDLYPYILVNIGSGVS-ILKVTGPSQFERVGGSSLG--G------GTLWGLLSLLTQATD 192 (342)
T ss_pred HEEEECCCCCHHHHHHHHCCCCCCCEEEEECCCCEE-EEEECCCCHHCCCCCCCCC--C------CHHHHHHHHHCCCCC
T ss_conf 735305433323323343054445213685168737-9995385332002554667--5------028889998726443
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHH-----HHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3556665540573334586111068875422102458999-----999851-1201210688999999999999999999
Q gi|254781038|r 187 GVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQ-----KTICAF-DVLEKQDIADICASFQVTVVRILQARLK 260 (363)
Q Consensus 187 Gp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~-----~~i~~~-~~~~~~~~~diaasfQ~~i~~~L~~k~~ 260 (363)
=..+-.+|+.||.+...+-..-.-+.+ +.=-|||+... +..+.. +..++-...|+|+|+--+|.+.+-.
T Consensus 193 ydqmld~aq~GDn~svDmlVgdIYg~d--y~~~glks~~iAssFGkVf~~r~k~le~F~p~di~~sll~aisnnigq--- 267 (342)
T COG5146 193 YDQMLDMAQHGDNNSVDMLVGDIYGDD--YEEPGLKSDLIASSFGKVFHHRDKPLEEFTPSDILASLLGAISNNIGQ--- 267 (342)
T ss_pred HHHHHHHHHCCCCCCCEEEEHHHCCCC--CCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHCCHHH---
T ss_conf 999999985388764101301220676--434799721667777899885137054358677899999998630346---
Q ss_pred HHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHH
Q ss_conf 9999987621445523654133458799999999999
Q gi|254781038|r 261 QGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLC 297 (363)
Q Consensus 261 ~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~ 297 (363)
.|....+ +.++..+.+.|-.-.|..++......+
T Consensus 268 iAyl~A~---~~n~qNIyfgGSf~rnhl~tm~tl~Ya 301 (342)
T COG5146 268 IAYLVAR---EFNTQNIYFGGSFHRNHLLTMVTLDYA 301 (342)
T ss_pred HHHHHHH---HHCCCEEEEEEEECCCHHHHHHHHHHH
T ss_conf 6788887---616522898300212600000356788
No 191
>cd03586 Pol_IV_kappa Pol_IV_kappa, a member of the Y-family of DNA polymerases. Pol_Y's can transverse replication-blocking DNA lesions, such as cyclobutane pyrimidine dimers resulting from UV damage, at the cost of an elevated error rate. The Y-family has no 3'-5' exonuclease activity. In addition to possessing a topology akin to a right hand, with "thumb", "fingers" and "palm" motifs, like polymerases from the A-, B-, C- and X-families, the Y-family has a unique "little finger" motif. Expression of Y-family polymerases is often induced by DNA damage. These polymerases are phylogenetically unrelated to classical DNA polymerases. Originally called the DinB family, they belong to the recently described Y-family of DNA polymerases. Pol IV is mostly found in bacteria and archaea. Although the structure of Pol IV is similar to that of Pol eta, it shows markedly differenct efficiencies and fidelities in bypassing various DNA lesions. All Pol IV-like polymerases studied to date are able to b
Probab=35.94 E-value=31 Score=14.86 Aligned_cols=21 Identities=33% Similarity=0.063 Sum_probs=15.3
Q ss_pred HCCCHHHHHHHHHHHHHHCCC
Q ss_conf 877258999999999998499
Q gi|254781038|r 311 LCTDNAVMIAWAALERMEAGL 331 (363)
Q Consensus 311 ~ctDNAaMIA~ag~~~~~~g~ 331 (363)
..|++..-|--++...|+.-+
T Consensus 301 ~~T~d~~~l~~~a~~ll~~~~ 321 (337)
T cd03586 301 EPTNDTDDIYEAALELFEKLY 321 (337)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
T ss_conf 865899999999999999974
No 192
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=35.22 E-value=31 Score=14.78 Aligned_cols=46 Identities=13% Similarity=0.092 Sum_probs=35.1
Q ss_pred CEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHH
Q ss_conf 2365413345879999999999986898899628788772589999
Q gi|254781038|r 275 AVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIA 320 (363)
Q Consensus 275 ~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA 320 (363)
+.|.++|+-+-.+.+++.+.++.++.++++......+-.+=++.|+
T Consensus 37 rPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~ 82 (170)
T COG1880 37 RPLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMGNLIGRGIG 82 (170)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHCCHHHCCCC
T ss_conf 9549865532588999999999986487447532110202324656
No 193
>TIGR00430 Q_tRNA_tgt queuine tRNA-ribosyltransferase; InterPro: IPR004803 The queuine tRNA-ribosyltransferase (tgt) 2.4.2.29 from EC catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The archaea have a closely related enzyme (IPR004804 from INTERPRO) that catalyses a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes. ; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0008616 queuosine biosynthetic process.
Probab=35.08 E-value=30 Score=14.91 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=7.2
Q ss_pred CCCCCCC-CCCC-HHHHHH
Q ss_conf 0688754-2210-245899
Q gi|254781038|r 209 VQGTLCD-FSFS-GLKTSV 225 (363)
Q Consensus 209 ~~~~~~d-FSFS-GLkTav 225 (363)
..++++. |||| |++-.|
T Consensus 89 TDSGGFQvFSLsfG~ehGv 107 (415)
T TIGR00430 89 TDSGGFQVFSLSFGMEHGV 107 (415)
T ss_pred EECCCEEEEECCCCHHHHH
T ss_conf 4067502312000011003
No 194
>TIGR01090 apt adenine phosphoribosyltransferase; InterPro: IPR005764 Adenine phosphoribosyltransferase (APRTase, 2.4.2.7 from EC) is a widely distributed enzyme, and its deficiency in humans causes the accumulation of 2,8-dihydroxyadenine. It is the sole catalyst for adenine recycling in most eukaryotes. AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate ; GO: 0003999 adenine phosphoribosyltransferase activity, 0006168 adenine salvage.
Probab=34.87 E-value=24 Score=15.62 Aligned_cols=56 Identities=18% Similarity=0.225 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCC--EEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 999699999999998389822453--687406643012567799999998875148643330367765301322567998
Q gi|254781038|r 59 HVDVLDILIKQTLLRANMQISDMD--SIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFP 136 (363)
Q Consensus 59 H~~~l~~li~~~l~~a~~~~~~id--~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~P 136 (363)
....|..|+++..+. + . +|| .|+-+--=| --++-+||+.+|+|+||| |-...++++
T Consensus 31 f~~~id~l~~~~~~~-~--~-~id~d~iVG~EaRG--------FifG~~LA~~LgvGFVPV----------RK~GKLP~~ 88 (175)
T TIGR01090 31 FRFLIDLLVERYKDA-N--G-EIDADLIVGLEARG--------FIFGAALAYKLGVGFVPV----------RKPGKLPGE 88 (175)
T ss_pred HHHHHHHHHHHHHHC-C--C-CCCEEEEECCCCCH--------HHHHHHHHHHHCCCEEEE----------ECCCCCCCC
T ss_conf 999999999999860-7--9-51513687676672--------577889999708980675----------478766842
No 195
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=34.74 E-value=32 Score=14.73 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEE-ECCCCCH-HHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 699999999998389822453687-4066430-125677999999988751486433303
Q gi|254781038|r 62 VLDILIKQTLLRANMQISDMDSIA-VTAGPGL-MGGLIVGLMTAKAISYVSHKPFYAINH 119 (363)
Q Consensus 62 ~l~~li~~~l~~a~~~~~~id~Ia-vt~gPG~-~~~L~vG~~~Ak~la~~~~~Pli~VnH 119 (363)
.-..-.+++|++++++.+|||++- +|..|.+ .|+. ..-.++.|... +.+.+.|+.
T Consensus 53 ma~~Aa~~aL~~ag~~~~dIdlli~~s~~~~~~~P~~--a~~v~~~LGl~-~~~~fdi~~ 109 (320)
T cd00830 53 LAVEAAKKALEDAGIDADDIDLIIVATSTPDYLFPAT--ACLVQARLGAK-NAAAFDINA 109 (320)
T ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCH--HHHHHHHHCCC-CCCEECCCC
T ss_conf 9999999999866989567888999415689868839--99999996889-972251045
No 196
>PRK07801 acetyl-CoA acetyltransferase; Provisional
Probab=34.09 E-value=33 Score=14.66 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=45.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC-C-CHHHHHHHHHHHHHHHHHHHC----CCCCCC
Q ss_conf 2121871455999999996999999999983898224536874066-4-301256779999999887514----864333
Q gi|254781038|r 44 HGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAG-P-GLMGGLIVGLMTAKAISYVSH----KPFYAI 117 (363)
Q Consensus 44 ~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~g-P-G~~~~L~vG~~~Ak~la~~~~----~Pli~V 117 (363)
-++|+|....+- =.+....+++++|++++++.++||.+-+..- + |.. +.+.||..++..+ +|.+-|
T Consensus 14 ~gk~~G~l~~~~---~~~L~a~ai~~~l~r~~i~p~~Id~vi~G~v~~~g~~-----~~n~aR~~~L~aGlp~~vpa~tV 85 (382)
T PRK07801 14 VGKRGGGLAGVH---PADLGAHVLRGLVDRNDIDPAAVDDVIFGCVDAIGPQ-----AGNIARTSWLAAGYPEEVPGVTV 85 (382)
T ss_pred CCCCCCCCCCCC---HHHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCCCCC-----CCCHHHHHHHHCCCCCCCCEEEE
T ss_conf 038999779999---9999999999999980979899898999716665665-----56799999997699988864888
Q ss_pred HHHHHHHHC
Q ss_conf 036776530
Q gi|254781038|r 118 NHLEGHILT 126 (363)
Q Consensus 118 nH~~aH~~~ 126 (363)
|..-+==+.
T Consensus 86 n~~CaSGl~ 94 (382)
T PRK07801 86 DRQCGSSQQ 94 (382)
T ss_pred CCCCCHHHH
T ss_conf 412158999
No 197
>pfam00117 GATase Glutamine amidotransferase class-I.
Probab=34.02 E-value=33 Score=14.65 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=27.2
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 2245368740664301256779999999887514864333
Q gi|254781038|r 78 ISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAI 117 (363)
Q Consensus 78 ~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~V 117 (363)
..+.|+|-.+-|||.+.-..--....+. +...++|++||
T Consensus 39 ~~~~d~iilspGpg~p~~~~~~~~~i~~-~~~~~~PiLGI 77 (187)
T pfam00117 39 LLNPDGIIISPGPGSPGDAGGAIEAIKE-LRENKIPILGI 77 (187)
T ss_pred HCCCCEEEECCCCCCHHHCCCHHHHHHH-HHHCCCCEEEE
T ss_conf 2599989991998611013458999999-99779989999
No 198
>PRK08041 consensus
Probab=33.96 E-value=33 Score=14.65 Aligned_cols=140 Identities=18% Similarity=0.231 Sum_probs=73.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHC----CCCCCCH
Q ss_conf 621218714559999999969999999999838982245368740664301256779999999887514----8643330
Q gi|254781038|r 43 QHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSH----KPFYAIN 118 (363)
Q Consensus 43 ~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~----~Pli~Vn 118 (363)
.-++|+|...+.- =.+....++++++++++++.++||.|-+..--- .+ .|.+.||-.++..+ +|-+.||
T Consensus 13 P~g~~~G~l~~~~---~~~L~a~~ik~~l~r~gi~~~~ID~vi~G~v~~--~g--~g~n~aR~~al~aGlp~~vpa~tVn 85 (391)
T PRK08041 13 PIGCFQGALARHS---AVELGSLVVKALIERTGVPAYAVDEVILGQVLT--AG--AGQNPARQSAIKGGLPNSVSAITIN 85 (391)
T ss_pred CCCCCCCCCCCCC---HHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCC--CC--CCCCHHHHHHHHCCCCCCCCEEEEC
T ss_conf 6115898878999---999999999999998198989989899980576--56--5665999999976999888717875
Q ss_pred HHHHHHHCCCC-------------------CCCCCCCCEEE-EEEC---CCEEEEEECCCCCCE-ECCCCCCCCHHHHHH
Q ss_conf 36776530132-------------------25679984399-9706---874799983756430-002233630023888
Q gi|254781038|r 119 HLEGHILTARL-------------------TDDIAFPYLVL-LVSG---GHTQILLVRDVAHYD-RLGTTIDDALGECFD 174 (363)
Q Consensus 119 H~~aH~~~~~l-------------------~~~~~~PfL~L-lvSG---GhT~l~~~~~~~~~~-ilg~T~Dda~Ge~~D 174 (363)
.+-+==+.+.. ++.-.-||+.- .-+| |+..++ ... -+. ..-..-|..-|+.-+
T Consensus 86 r~C~SGl~Ai~~Aa~~I~~G~~dvvlagGvEsmS~~P~~~~~~~~g~~~g~~~~~--d~~-~~dgl~d~~~~~~Mg~tAE 162 (391)
T PRK08041 86 DVCGSGLKALHLATQAIQCGEADIVIAGGQENMSRAPHVLTDSRTGAQLGNSQLV--DSL-VHDGLWDAFNDYHIGVTAE 162 (391)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC--HHH-CCCCCCCCCCCCCHHHHHH
T ss_conf 1656878999999999867997667774122146584113444446666754000--001-1345535457873778899
Q ss_pred HHHHHCCCCCCHHHHHHHHHH
Q ss_conf 898852887610355666554
Q gi|254781038|r 175 KIAKSLGLPYPGGVEIEKAAL 195 (363)
Q Consensus 175 K~ar~Lgl~yPgGp~ie~~A~ 195 (363)
.+|+..|+.- .+.|.+|.
T Consensus 163 ~~A~~~gIsR---e~qD~~A~ 180 (391)
T PRK08041 163 NLAREYGISR---ELQDAYAL 180 (391)
T ss_pred HHHHHHCCCH---HHHHHHHH
T ss_conf 9999859899---99999999
No 199
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=33.91 E-value=33 Score=14.64 Aligned_cols=54 Identities=15% Similarity=0.034 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEECCC-CCHHHHHHHHHHHHHHHHHHHCC---CCCCCHHHH
Q ss_conf 999999999983898224536874066-43012567799999998875148---643330367
Q gi|254781038|r 63 LDILIKQTLLRANMQISDMDSIAVTAG-PGLMGGLIVGLMTAKAISYVSHK---PFYAINHLE 121 (363)
Q Consensus 63 l~~li~~~l~~a~~~~~~id~Iavt~g-PG~~~~L~vG~~~Ak~la~~~~~---Pli~VnH~~ 121 (363)
-....+++|++++++..|||+|-|+.. |.+.. -+.|-.+++.++. |.+.|+.--
T Consensus 11 a~~Aa~~Al~dAGi~~~~i~~viv~t~t~~~~~-----p~~a~~v~~~lgl~~~p~~~v~~aC 68 (254)
T cd00327 11 GFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEF-----SGAAGQLAYHLGISGGPAYSVNQAC 68 (254)
T ss_pred HHHHHHHHHHHHCCCHHHCCEEEEEEECCCCHH-----HHHHHHHHHHCCCCCCCCEEHHHHH
T ss_conf 999999999982998546889999997875022-----4799999998299998806612024
No 200
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=33.79 E-value=33 Score=14.63 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=29.0
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHH
Q ss_conf 365413345879999999999986898899628788
Q gi|254781038|r 276 VLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARL 311 (363)
Q Consensus 276 ~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ 311 (363)
-+++..|++..+.+..++++...+.++...+.-..+
T Consensus 3 lvvC~~G~~tS~ll~~~l~~~~~~~~~~~~v~~~~~ 38 (84)
T cd00133 3 LVVCGSGIGSSSMLAEKLEKAAKELGIEVKVEAQGL 38 (84)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHCCEEEEEEEHHH
T ss_conf 999999889999999999999886882899986123
No 201
>PRK01216 DNA polymerase IV; Validated
Probab=33.66 E-value=33 Score=14.61 Aligned_cols=19 Identities=16% Similarity=-0.045 Sum_probs=9.7
Q ss_pred CEEEEEECCCHHHEEEEEE
Q ss_conf 4688750260220778873
Q gi|254781038|r 6 KTVIGIETSCDETAVAVVR 24 (363)
Q Consensus 6 ~~ILgIETScd~tsvaiv~ 24 (363)
|+|+=||--|--.||-.++
T Consensus 1 ~iI~hiDmd~FyasvE~~~ 19 (351)
T PRK01216 1 MIVLFVDFDYFFAQVEEVL 19 (351)
T ss_pred CEEEEEECCCHHHHHHHHH
T ss_conf 9899980674888888021
No 202
>KOG1224 consensus
Probab=33.07 E-value=34 Score=14.55 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=24.0
Q ss_pred CCCCEEEECCCCCHHHHH-HHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 245368740664301256-7799999998875148643330
Q gi|254781038|r 79 SDMDSIAVTAGPGLMGGL-IVGLMTAKAISYVSHKPFYAIN 118 (363)
Q Consensus 79 ~~id~Iavt~gPG~~~~L-~vG~~~Ak~la~~~~~Pli~Vn 118 (363)
--.|+|.|+-|||.+-|- -+|+ .-+-+-..-++|+.||.
T Consensus 63 ~~FDaIVVgPGPG~P~~a~d~gI-~~rl~~~~~~iPilGIC 102 (767)
T KOG1224 63 VAFDAIVVGPGPGSPMCAADIGI-CLRLLLECRDIPILGIC 102 (767)
T ss_pred CCCCEEEECCCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEE
T ss_conf 02244896689979874788789-99999865788646543
No 203
>TIGR01127 ilvA_1Cterm threonine dehydratase; InterPro: IPR005789 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. A form of threonine dehydratase with two copies of the C-terminal domain is described by . This model describes a phylogenetically distinct which branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any domain. Many members of this model are found in species with other isoleucine biosynthetic enzymes.; GO: 0004794 L-threonine ammonia-lyase activity.
Probab=33.03 E-value=19 Score=16.35 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=21.6
Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHHCC----CEEEECCH
Q ss_conf 5236541334587999999999998689----88996287
Q gi|254781038|r 274 QAVLVVSGGVASNHFIRASLIDLCVLHG----FRFVAPPA 309 (363)
Q Consensus 274 ~~~lvv~GGVaaN~~LR~~l~~~~~~~~----~~~~~P~~ 309 (363)
.-.+|+|||=.--+.|.+-+.+-+.+.| |..+.|+.
T Consensus 277 K~~~v~SGGNID~~~l~~iI~kGL~~~GR~v~I~~~~~D~ 316 (381)
T TIGR01127 277 KVAVVVSGGNIDLNLLEKIILKGLVKSGRKVRIETVIPDR 316 (381)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECC
T ss_conf 8999985477686677788655222058369999998238
No 204
>PRK07025 consensus
Probab=32.93 E-value=34 Score=14.53 Aligned_cols=76 Identities=21% Similarity=0.296 Sum_probs=46.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHC----CCCCCCH
Q ss_conf 621218714559999999969999999999838982245368740664301256779999999887514----8643330
Q gi|254781038|r 43 QHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSH----KPFYAIN 118 (363)
Q Consensus 43 ~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~----~Pli~Vn 118 (363)
.-++++|..-.. .=.+.....++++|++++++.++||.|-+..--. .+ .|.+.||..++..+ +|.+-||
T Consensus 13 P~gk~~G~l~~~---~~~~L~~~~i~~~l~r~~i~~~~Id~vi~G~v~~--~g--~g~n~aR~~al~aGlp~~vp~~tVn 85 (393)
T PRK07025 13 AVGKFGGSLAKI---AAPELGATVIRAVLERAGVKPEQVSEVILGQVLT--AG--SGQNPARQALIKAGLPNAVPGMTIN 85 (393)
T ss_pred CCCCCCCCCCCC---CHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCC--CC--CCCCHHHHHHHHCCCCCCCCEEEEC
T ss_conf 421689987889---8999999999999998298989989899992476--55--5664999999976999888648884
Q ss_pred HHHHHHH
Q ss_conf 3677653
Q gi|254781038|r 119 HLEGHIL 125 (363)
Q Consensus 119 H~~aH~~ 125 (363)
-+-+==+
T Consensus 86 r~C~SGl 92 (393)
T PRK07025 86 KVCGSGL 92 (393)
T ss_pred CHHHHHH
T ss_conf 1536778
No 205
>TIGR00263 trpB tryptophan synthase, beta subunit; InterPro: IPR006654 Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan , : L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H_2O It has two functional domains, each found in bacteria and plants on a separate subunit: alpha chain (IPR002028 from INTERPRO) is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and beta chain is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together on a single multifunctional protein . The beta chain of the enzyme, represented here, requires pyridoxal-phosphate as a cofactor. The pyridoxal-phosphate group is attached to a lysine residue. The region around this lysine residue also contains two histidine residues which are part of the pyridoxal-phosphate binding site.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process.
Probab=32.90 E-value=19 Score=16.24 Aligned_cols=143 Identities=20% Similarity=0.314 Sum_probs=89.0
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHC-CCCC----CCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCC
Q ss_conf 8740664301256779999999887514-8643----3303677653013225679984399970687479998375643
Q gi|254781038|r 84 IAVTAGPGLMGGLIVGLMTAKAISYVSH-KPFY----AINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHY 158 (363)
Q Consensus 84 Iavt~gPG~~~~L~vG~~~Ak~la~~~~-~Pli----~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~ 158 (363)
--|.=.|-. +.+|+.|+..++ ..+| --||==|| .+++-+- |.+|++.-++-
T Consensus 49 ~~Y~GRpTP-------Lt~A~nlt~~~Gg~kiYLKREDLnHTGAH----KiNNalG-------------Q~LLAKrMGK~ 104 (412)
T TIGR00263 49 KNYAGRPTP-------LTFAKNLTEKLGGAKIYLKREDLNHTGAH----KINNALG-------------QALLAKRMGKK 104 (412)
T ss_pred HHCCCCCCH-------HHHHHHHHHHCCCCEEEEECHHHCCCCHH----HHHHHHH-------------HHHHHHHCCCC
T ss_conf 860789866-------67999999853896688611010465435----8999999-------------99999872893
Q ss_pred EECCCCCCCCHHHHHHHHHHHCCCC---CCHHHHHHHHHHHCCCCCCCCC------CHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 0002233630023888898852887---6103556665540573334586------111068875422102458999999
Q gi|254781038|r 159 DRLGTTIDDALGECFDKIAKSLGLP---YPGGVEIEKAALMGDGKRFKFP------CPLVQGTLCDFSFSGLKTSVQKTI 229 (363)
Q Consensus 159 ~ilg~T~Dda~Ge~~DK~ar~Lgl~---yPgGp~ie~~A~~g~~~~~~~P------~p~~~~~~~dFSFSGLkTav~~~i 229 (363)
+||+||==-==|=|==-+|-+|||+ |=|-.-|||.+ +|-|+.- .|+..+.. .||-|+-..+
T Consensus 105 R~IAETGAGQHGVATAtaaAllGl~C~vYMGa~DV~RQ~----pNVFRMellGA~V~pV~sGs~------TLKDA~N~Al 174 (412)
T TIGR00263 105 RIIAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQK----PNVFRMELLGAKVVPVTSGSG------TLKDAVNEAL 174 (412)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCHHHCC----CCHHHHHHCCCEEEEECCCCC------CHHHHHHHHH
T ss_conf 588740898037999999997189559834861351457----752345137786833015787------0378999999
Q ss_pred HHHC-CC-----------CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8511-20-----------1210688999999999999999999
Q gi|254781038|r 230 CAFD-VL-----------EKQDIADICASFQVTVVRILQARLK 260 (363)
Q Consensus 230 ~~~~-~~-----------~~~~~~diaasfQ~~i~~~L~~k~~ 260 (363)
+.=- .. -.-+-++|-.-||..|-+=....+.
T Consensus 175 rDWv~~~~dThYvlGSa~GPhPfP~mVr~FQsvIG~E~k~Qi~ 217 (412)
T TIGR00263 175 RDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQIL 217 (412)
T ss_pred HHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 8741363751123211148776722117887789899999999
No 206
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=32.69 E-value=34 Score=14.51 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CEEEEEHHHHHHHHHHHHHHHHHHHCCCEEE-ECCHHHCCCHH
Q ss_conf 68899999999999999999999999876214455--2365413345879999999999986898899-62878877258
Q gi|254781038|r 240 IADICASFQVTVVRILQARLKQGFLLFRKAFPHKQ--AVLVVSGGVASNHFIRASLIDLCVLHGFRFV-APPARLCTDNA 316 (363)
Q Consensus 240 ~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~--~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~-~P~~~~ctDNA 316 (363)
..++....+..+ +-+++-++++++.+.......+ +.++++||-+-=..+++++++.. ++++. ...|..|.=.+
T Consensus 249 ~~ei~~ai~~~l-~~i~~~i~~~Le~~~pel~~Di~~~GIvLvGGss~ip~v~~~i~~~~---g~~v~~~~~P~~~Va~G 324 (338)
T PRK13927 249 SNEIREALQEPL-SAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET---GLPVHVAEDPLTCVARG 324 (338)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH---CCCCCCCCCHHHHHHHH
T ss_conf 899999999999-99999999999848866543331287899874014266999999997---84970179867899998
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999998
Q gi|254781038|r 317 VMIAWAALERME 328 (363)
Q Consensus 317 aMIA~ag~~~~~ 328 (363)
|++..--+.+|+
T Consensus 325 A~~~le~~~~~~ 336 (338)
T PRK13927 325 TGKALENIDKLG 336 (338)
T ss_pred HHHHHHHHHHHC
T ss_conf 999986678641
No 207
>TIGR02814 pfaD_fam PfaD family protein; InterPro: IPR014179 The protein PfaD is part of a four-gene locus, similar to polyketide biosynthesis systems, which is responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the entry are found in loci presumed to act in polyketide biosyntheses per se..
Probab=32.32 E-value=13 Score=17.33 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 455999999996999999999983898
Q gi|254781038|r 51 VPEVAARAHVDVLDILIKQTLLRANMQ 77 (363)
Q Consensus 51 ~P~~A~~~H~~~l~~li~~~l~~a~~~ 77 (363)
+||+|...=.--=..++++++.+=.|+
T Consensus 144 RpEVA~~Fm~PAP~~~L~~L~a~G~it 170 (449)
T TIGR02814 144 RPEVAEAFMSPAPAAILQKLLAEGRIT 170 (449)
T ss_pred CHHHHHHHCCCCHHHHHHHHHHCCCCC
T ss_conf 679998621523489999985338768
No 208
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; InterPro: IPR006221 This entry presents the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. ; GO: 0004049 anthranilate synthase activity, 0008152 metabolic process.
Probab=32.29 E-value=35 Score=14.46 Aligned_cols=102 Identities=18% Similarity=0.276 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHH--HHHHHHHHHHHHHHHHCC---CCCCCHHHHHH
Q ss_conf 7145599999999699999999998389822453687406643012--567799999998875148---64333036776
Q gi|254781038|r 49 GVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMG--GLIVGLMTAKAISYVSHK---PFYAINHLEGH 123 (363)
Q Consensus 49 Gv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~--~L~vG~~~Ak~la~~~~~---Pli~VnH~~aH 123 (363)
||---++-|-|.-.+..+ +++ . -...-.|+|.+|-||+.+- ++..|+...--=-++=++ |++|| +-||
T Consensus 28 Gv~~V~Vkrnd~~~~~~i-e~L-~---P~~~lfdaivisPGPC~P~eAa~~~Gii~~~i~h~aGkldevPILGv--CLG~ 100 (212)
T TIGR00566 28 GVAEVVVKRNDSLTLQEI-EAL-L---PLLPLFDAIVISPGPCTPNEAAISMGIILEAIRHFAGKLDEVPILGV--CLGH 100 (212)
T ss_pred CCEEEEEECCCCCCHHHH-HHH-C---CCCCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCCC--CHHH
T ss_conf 610577720673103458-763-1---13563345676586568321220411799998742376226760201--0556
Q ss_pred HHCCCCC--------------------------CCCC--CCCEEEEEECCCEEEEEECCCCC
Q ss_conf 5301322--------------------------5679--98439997068747999837564
Q gi|254781038|r 124 ILTARLT--------------------------DDIA--FPYLVLLVSGGHTQILLVRDVAH 157 (363)
Q Consensus 124 ~~~~~l~--------------------------~~~~--~PfL~LlvSGGhT~l~~~~~~~~ 157 (363)
=..+.-. ..+. ||-=+|-+.==|+.+|..+....
T Consensus 101 QA~~qA~Gg~V~~a~~~~HGk~s~i~hng~~~f~GL~~GyPP~~L~~TRYHSL~V~p~~l~~ 162 (212)
T TIGR00566 101 QALAQAFGGDVVRANTVMHGKTSEIEHNGAGIFRGLFNGYPPDTLTATRYHSLVVEPETLPT 162 (212)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCEEECCCEEECCCCCCCCCCCCCCCCEEEEEECCCCCCC
T ss_conf 87887428722542113687300124777101246557768664435750556674457762
No 209
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=31.71 E-value=36 Score=14.40 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=20.6
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 5368740664301256779999999887514864333
Q gi|254781038|r 81 MDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAI 117 (363)
Q Consensus 81 id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~V 117 (363)
.|+|-.|.|||-+..+.-.+.+-|.|.- ..+|+.||
T Consensus 221 pDGiflSNGPGDP~~~~~~i~~ik~l~~-~~iPifGI 256 (368)
T COG0505 221 PDGIFLSNGPGDPAPLDYAIETIKELLG-TKIPIFGI 256 (368)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHC-CCCCEEEE
T ss_conf 9979974899880677899999999864-68983788
No 210
>pfam08392 FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein. The members of this family are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region featured in this family contains the active site residues, as well as motifs involved in substrate binding.
Probab=31.69 E-value=36 Score=14.40 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCC
Q ss_conf 999999969999999999838982245368740664
Q gi|254781038|r 55 AARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGP 90 (363)
Q Consensus 55 A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gP 90 (363)
|-.+-...+-..++++|.+.+++..|||.+-|...=
T Consensus 79 ar~Eae~v~f~avd~Lf~ktgv~P~dIdiLVvNcSl 114 (290)
T pfam08392 79 AREEAEEVMFGAVDELFAKTGVRPRDIGILVVNCSL 114 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCC
T ss_conf 999999999999999999739987689999996778
No 211
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit; InterPro: IPR010046 This entry represents a well-defined clade of molybdopterin-dependent formate dehydrogenases, bacterial type , , , . It represents the alpha subunit, which contains a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulphur clusters and cytochromes.; GO: 0008863 formate dehydrogenase activity, 0030151 molybdenum ion binding, 0051539 4 iron 4 sulfur cluster binding.
Probab=31.65 E-value=24 Score=15.52 Aligned_cols=89 Identities=24% Similarity=0.296 Sum_probs=50.9
Q ss_pred CCCEEEECC-C------CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC---C------CCCCCCEEEEEE
Q ss_conf 453687406-6------43012567799999998875148643330367765301322---5------679984399970
Q gi|254781038|r 80 DMDSIAVTA-G------PGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLT---D------DIAFPYLVLLVS 143 (363)
Q Consensus 80 ~id~Iavt~-g------PG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~---~------~~~~PfL~LlvS 143 (363)
+.+..|-.. | |.-.-.+-.-.+-||++|+-.-.--|.=.-..-|-.+-+.. . -+.|| |.+-=+
T Consensus 46 ~C~gCAW~~~GqkGGl~p~~~~~~~~C~~g~~A~A~E~~~~~~~~~FF~~hsv~EL~~~~~~eL~~~GRL~~P-l~~r~~ 124 (824)
T TIGR01701 46 DCPGCAWGESGQKGGLQPEALALLEFCENGAKAIAWETTPRRIKAEFFAEHSVSELRTLDSHELEKLGRLTYP-LSLRDP 124 (824)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCC-CCCCCC
T ss_conf 7774536887766776776555135545558887655166755856765456898605881479864886787-310576
Q ss_pred CCCEEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHCCCCC-C
Q ss_conf 68747999837564300022336300238888988528876-1
Q gi|254781038|r 144 GGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAKSLGLPY-P 185 (363)
Q Consensus 144 GGhT~l~~~~~~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~y-P 185 (363)
.-..|+.|.. -||||.+|+.|.-.- |
T Consensus 125 ----------gsd~Y~piSW------~~A~~~I~~~l~~~d~P 151 (824)
T TIGR01701 125 ----------GSDHYKPISW------DDAYDEIAAKLNSLDDP 151 (824)
T ss_pred ----------CCCCCCCCCH------HHHHHHHHHHHCCCCCC
T ss_conf ----------3356653577------99999999985177870
No 212
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=31.46 E-value=36 Score=14.37 Aligned_cols=35 Identities=11% Similarity=-0.065 Sum_probs=16.4
Q ss_pred HHHH-H-HHHHHHHH-HCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 5899-9-99999999-8499988762-002357878757
Q gi|254781038|r 315 NAVM-I-AWAALERM-EAGLPADDLS-ISPRSRWPLDEK 349 (363)
Q Consensus 315 NAaM-I-A~ag~~~~-~~g~~~~~~~-~~~~~rw~ld~~ 349 (363)
-|+. + +.++...+ +.++.....+ -.+.|.++++..
T Consensus 325 gaaG~~e~~~~~l~l~~~~~iPpt~n~~~~dp~~~~~~v 363 (395)
T PRK09185 325 GAAGAVEAAICWLALNRDLPLPGHVNDGQPDPALPPLYL 363 (395)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 889999999999999828985998999998988876546
No 213
>PRK07898 consensus
Probab=31.42 E-value=36 Score=14.37 Aligned_cols=126 Identities=24% Similarity=0.185 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCC-CCCEEEEEECCCEEEEEECCCCCCEECCCCCCCC
Q ss_conf 430125677999999988751486433303677653013225679-9843999706874799983756430002233630
Q gi|254781038|r 90 PGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIA-FPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDA 168 (363)
Q Consensus 90 PG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~-~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda 168 (363)
|-++.-|+.-+...|-+-.++|+|++.+---||-=..+-+..... --+=++.|||---.+=++.+. ..++-......
T Consensus 92 ~~~PedL~~Qip~i~e~l~a~gIp~le~~GyEADDiIgTla~~a~~~g~~v~IvSgDKDl~QLV~d~--v~vl~~~kg~~ 169 (902)
T PRK07898 92 SATPDEFKGQVDLIKEVLGALGITVLAKPGFEADDIIATLATQAEAEGYRVLVVTGDRDALQLVSDD--VTVLYPRKGVS 169 (902)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHCCCC--EEEEECCCCCC
T ss_conf 9998899998999999999879988563896589999999999997799699976899775517898--79997789986
Q ss_pred HHHHHH--HHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 023888--89885288761035566655405733345861110688754221024589999998
Q gi|254781038|r 169 LGECFD--KIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTIC 230 (363)
Q Consensus 169 ~Ge~~D--K~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~ 230 (363)
--+.|| .|-...|++ | -..+|-+|..||.... +|=+.+ . |-|||. ++++
T Consensus 170 ~~~~~d~~~V~ek~GV~-P-~qviD~lAL~GDsSDN---IPGVpG--I-----G~KTA~-kLL~ 220 (902)
T PRK07898 170 DLTRFTPEAVEEKYGLT-P-AQYPDFAALRGDPSDN---LPGIPG--V-----GEKTAA-KWIA 220 (902)
T ss_pred CCEECCHHHHHHHHCCC-H-HHHHHHHHHCCCCCCC---CCCCCC--C-----CHHHHH-HHHH
T ss_conf 35442899999986979-8-9999999981886457---999998--4-----478899-9999
No 214
>PRK07456 consensus
Probab=31.39 E-value=36 Score=14.37 Aligned_cols=113 Identities=15% Similarity=0.085 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHHHHHHHH-HHHCCCCCCCHHHHHHHHCCCCCCCC-CCCCEEEEEECCCEEEEEECCCCCCEECC----
Q ss_conf 6430125677999999988-75148643330367765301322567-99843999706874799983756430002----
Q gi|254781038|r 89 GPGLMGGLIVGLMTAKAIS-YVSHKPFYAINHLEGHILTARLTDDI-AFPYLVLLVSGGHTQILLVRDVAHYDRLG---- 162 (363)
Q Consensus 89 gPG~~~~L~vG~~~Ak~la-~~~~~Pli~VnH~~aH~~~~~l~~~~-~~PfL~LlvSGGhT~l~~~~~~~~~~ilg---- 162 (363)
.|-++.-|+.=+..-+-+- .++|+|++.+---||-=..+-+.... .--+=++.|||---.+=++.+..+..++-
T Consensus 87 R~~~PedL~~Qip~i~e~l~~algIp~~e~~GyEADDiIaTla~~a~~~g~~v~IvSgDKDl~QLV~d~~~v~vl~~~~~ 166 (975)
T PRK07456 87 RDVAPDDFFQDLEQLQEILEEALNLPICTAPGYEADDVLGTLANRAADQGWRVRILSGDRDLFQLVDDERDIAVLYMGGG 166 (975)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHCCCCCCEEEEECCCC
T ss_conf 99998889999999999999836998741788019999999999999779908997888248860878766699821687
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 233630023888898852887610355666554057333
Q gi|254781038|r 163 TTIDDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKR 201 (363)
Q Consensus 163 ~T~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~ 201 (363)
.-.+..--+.+|.-+..=-++.+-...+|-+|..||...
T Consensus 167 p~~~~~~~~~~d~~~V~ek~GV~P~qiiD~lAL~GDsSD 205 (975)
T PRK07456 167 PYAKSGGPTLINEAGVKEKLGVAPEQVVDLKALTGDSSD 205 (975)
T ss_pred CCCCCCCCEEECHHHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf 544667765626999999869598998999997288656
No 215
>pfam01890 CbiG_C Cobalamin synthesis G C-terminus. Members of this family are involved in cobalamin synthesis. A member from Synechocystis sp. PCC 6803 has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. This family is the C-terminal region, and the mid- and N-termival parts are conserved independently in other families.
Probab=31.30 E-value=36 Score=14.36 Aligned_cols=48 Identities=19% Similarity=0.296 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEECC----CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 9699999999998389822453687406----6430125677999999988751486433303
Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMDSIAVTA----GPGLMGGLIVGLMTAKAISYVSHKPFYAINH 119 (363)
Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id~Iavt~----gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH 119 (363)
+.+...++++|.+.++....|+.||.-. .||+ ..++..+++|+.-+.-
T Consensus 15 ~~i~~~i~~~l~~~~l~~~~i~~iasid~K~~E~gl-----------~~~a~~l~~pl~~~~~ 66 (121)
T pfam01890 15 EEIEAAIEEALAEAGLSPEAVAAIATIDLKADEPGL-----------LELAARLGVPLRFFSA 66 (121)
T ss_pred HHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCHHH-----------HHHHHHHCCCEEEECH
T ss_conf 999999999999859997884056863214798899-----------9999992998699789
No 216
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=31.01 E-value=37 Score=14.32 Aligned_cols=57 Identities=12% Similarity=0.060 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEE-EECCCCCH-HHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 69999999999838982245368-74066430-12567799999998875148643330367
Q gi|254781038|r 62 VLDILIKQTLLRANMQISDMDSI-AVTAGPGL-MGGLIVGLMTAKAISYVSHKPFYAINHLE 121 (363)
Q Consensus 62 ~l~~li~~~l~~a~~~~~~id~I-avt~gPG~-~~~L~vG~~~Ak~la~~~~~Pli~VnH~~ 121 (363)
.-....+++|++++++.+|||+| .+|..|.+ +|+. ....++.|.. .+.+.+.|+---
T Consensus 56 ma~~Aa~~aL~~agi~~~dIdllI~~t~t~d~~~P~~--A~~v~~~LGl-~~~~~fDi~~aC 114 (327)
T PRK05963 56 LAASAADMALADAGIERSDIALTLLATSTPDHLLPPT--APLLAHWLGL-QNSGAADLAGAC 114 (327)
T ss_pred HHHHHHHHHHHHCCCCHHHCCEEEEEEECCCCCCCCH--HHHHHHHHCC-CCCEEEEHHHHH
T ss_conf 9999999999975989899879999860799989709--9999998577-861143597668
No 217
>KOG1785 consensus
Probab=30.98 E-value=29 Score=15.00 Aligned_cols=12 Identities=8% Similarity=0.227 Sum_probs=6.7
Q ss_pred CCHHHHHHHHCC
Q ss_conf 330367765301
Q gi|254781038|r 116 AINHLEGHILTA 127 (363)
Q Consensus 116 ~VnH~~aH~~~~ 127 (363)
-.+||.+-+-+.
T Consensus 148 iFSHMlaElkal 159 (563)
T KOG1785 148 IFSHMLAELKAL 159 (563)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999865
No 218
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=30.95 E-value=37 Score=14.32 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=25.8
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHH
Q ss_conf 55236541334587999999999998689889962878
Q gi|254781038|r 273 KQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPAR 310 (363)
Q Consensus 273 ~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~ 310 (363)
..+.+++++-|.-.. +-..+..+|+++++++.|-|-+
T Consensus 47 ~a~LvviA~Dv~P~e-iv~hlP~LCeek~IPy~~V~sk 83 (123)
T PRK04175 47 IAKLVVIAEDVDPEE-IVAHLPLLCEEKKIPYVYVPSK 83 (123)
T ss_pred CCCEEEEECCCCHHH-HHHHHHHHHHHCCCCEEEECCH
T ss_conf 887899978999099-9998899998549998997899
No 219
>PRK04262 hypothetical protein; Provisional
Probab=30.94 E-value=37 Score=14.32 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=33.7
Q ss_pred HHHHHHHHHHCCCCCCCCCEEEECC-C-CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 9999999998389822453687406-6-4301256779999999887514864333036
Q gi|254781038|r 64 DILIKQTLLRANMQISDMDSIAVTA-G-PGLMGGLIVGLMTAKAISYVSHKPFYAINHL 120 (363)
Q Consensus 64 ~~li~~~l~~a~~~~~~id~Iavt~-g-PG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~ 120 (363)
....+++|++++++.++||.|-|.. - |-.+++ +..-.++.|....+.+.+-+|+-
T Consensus 56 ~~AA~~aL~~agi~~~dIdlIi~aT~Tpd~~~ps--tA~~vq~~LGl~~~~~afDi~aa 112 (346)
T PRK04262 56 VEAARNALKRAGIDPKEIGAVYVGSESHPYAVKP--TATIVAEALGATPDLTAADLEFA 112 (346)
T ss_pred HHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCC--HHHHHHHHHCCCCCEEEEEHHCC
T ss_conf 9999999987599977889899964788866765--06899998389988059861022
No 220
>PRK03858 DNA polymerase IV; Validated
Probab=30.90 E-value=37 Score=14.31 Aligned_cols=20 Identities=30% Similarity=0.180 Sum_probs=13.9
Q ss_pred HCCCHHHHHHHHHHHHHHCC
Q ss_conf 87725899999999999849
Q gi|254781038|r 311 LCTDNAVMIAWAALERMEAG 330 (363)
Q Consensus 311 ~ctDNAaMIA~ag~~~~~~g 330 (363)
+-||+...|--++.+.++.-
T Consensus 304 ~pT~~~~~i~~~a~~Ll~~~ 323 (398)
T PRK03858 304 WATASTATILAAARELVAAA 323 (398)
T ss_pred CCCCCHHHHHHHHHHHHHHH
T ss_conf 87689999999999999986
No 221
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=30.50 E-value=37 Score=14.27 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHCCC
Q ss_conf 5879999999999986898
Q gi|254781038|r 284 ASNHFIRASLIDLCVLHGF 302 (363)
Q Consensus 284 aaN~~LR~~l~~~~~~~~~ 302 (363)
.+.-.++... ...+..+.
T Consensus 102 Ts~~H~~Ra~-~~~~~~~~ 119 (150)
T cd06259 102 TSAYHMPRAL-LIFRKAGL 119 (150)
T ss_pred CCHHHHHHHH-HHHHHHCC
T ss_conf 9888999999-99998099
No 222
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=30.11 E-value=38 Score=14.22 Aligned_cols=21 Identities=19% Similarity=0.040 Sum_probs=10.8
Q ss_pred HHHHHHHHHHCCCCCCCHHHH
Q ss_conf 999998875148643330367
Q gi|254781038|r 101 MTAKAISYVSHKPFYAINHLE 121 (363)
Q Consensus 101 ~~Ak~la~~~~~Pli~VnH~~ 121 (363)
-.|+.|+..++.|+.=++...
T Consensus 76 pva~~L~~~l~~~V~f~~d~~ 96 (653)
T PRK13962 76 PVAKRLSELLGKEVAFADDVI 96 (653)
T ss_pred HHHHHHHHHHCCCCEECCCCC
T ss_conf 999999999789728577678
No 223
>PRK03352 DNA polymerase IV; Validated
Probab=29.90 E-value=38 Score=14.20 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=17.9
Q ss_pred CCCCCEEEEEECCCHHHEEEEEEC
Q ss_conf 888846887502602207788733
Q gi|254781038|r 2 SKIKKTVIGIETSCDETAVAVVRR 25 (363)
Q Consensus 2 ~~~~~~ILgIETScd~tsvaiv~~ 25 (363)
+-|.++|+-||--|--.||..+++
T Consensus 1 ~~m~R~I~HvD~d~FyaSvE~~~~ 24 (345)
T PRK03352 1 TAMPRWVLHVDLDQFLASVELLRR 24 (345)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHC
T ss_conf 998608999746748998993537
No 224
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase; InterPro: IPR012743 This entry represents the 4-coumarate--CoA ligase associated with biosynthesis of the 4-hydroxy cinnamyl (also called 4-coumaroyl) chromophore covalently linked to a Cys residue in photoactive yellow protein of Rhodobacter spp. and Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 from EC and therefore joins a number of plant enzymes linked to lignin biosynthesis with similar names.; GO: 0016207 4-coumarate-CoA ligase activity, 0009698 phenylpropanoid metabolic process.
Probab=29.60 E-value=28 Score=15.09 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=29.6
Q ss_pred EECCCCCHHH----H-HHHHHHHHHHHHHHHC-----CCCCCCHHHHHHHHCCCCC
Q ss_conf 7406643012----5-6779999999887514-----8643330367765301322
Q gi|254781038|r 85 AVTAGPGLMG----G-LIVGLMTAKAISYVSH-----KPFYAINHLEGHILTARLT 130 (363)
Q Consensus 85 avt~gPG~~~----~-L~vG~~~Ak~la~~~~-----~Pli~VnH~~aH~~~~~l~ 130 (363)
.-|-+|-..+ . ++-+.+.||.+...-. +-+||+||+-|-+++..|-
T Consensus 125 GSTgtPkP~~HswaaL~~Ea~a~A~~lg~~p~p~~~Vi~~vPaHHlyGflf~~llP 180 (416)
T TIGR02372 125 GSTGTPKPVTHSWAALLREAEALAKALGLRPAPVRRVIALVPAHHLYGFLFSVLLP 180 (416)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 67862447988768898899999997066788755167612557888999999848
No 225
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=29.52 E-value=18 Score=16.47 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=24.2
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 552365413345879999999999986898899628
Q gi|254781038|r 273 KQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPP 308 (363)
Q Consensus 273 ~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~ 308 (363)
+..++.+.++=.--.++-...+.+ .+.|++++...
T Consensus 961 ~kg~~~~~~~d~dk~~~~~~a~~L-~~~G~~~yat~ 995 (1089)
T TIGR01369 961 KKGSVLLSVRDKDKEELLDLAKKL-AEKGYKIYATE 995 (1089)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHH-HHCCCEEEEEC
T ss_conf 887799980344345799999999-86373788502
No 226
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=29.26 E-value=39 Score=14.14 Aligned_cols=47 Identities=13% Similarity=0.261 Sum_probs=27.9
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH---HHHHHHHCCC
Q ss_conf 453687406643012567799999998875148643330---3677653013
Q gi|254781038|r 80 DMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAIN---HLEGHILTAR 128 (363)
Q Consensus 80 ~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~Vn---H~~aH~~~~~ 128 (363)
..|+|-.+-|||.+.-...-....+ .+..++|++||- -.-+|.+-+.
T Consensus 43 ~p~~IvlSpGPg~P~~~~~~~~~i~--~~~~~iPiLGIClG~Q~ia~~~Gg~ 92 (187)
T PRK08007 43 KPQKIVISPGPCTPDEAGISLDVIR--HYAGRLPILGVCLGHQAMAQAFGGK 92 (187)
T ss_pred CCCEEEECCCCCCHHHCCCCHHHHH--HHCCCCCEEEECHHHHHHHHHCCCE
T ss_conf 9897999999999589084046899--7538998899879999999980980
No 227
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=29.11 E-value=39 Score=14.11 Aligned_cols=55 Identities=24% Similarity=0.285 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEE-CCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 6999999999983898224536874-06643-0125677999999988751486433303
Q gi|254781038|r 62 VLDILIKQTLLRANMQISDMDSIAV-TAGPG-LMGGLIVGLMTAKAISYVSHKPFYAINH 119 (363)
Q Consensus 62 ~l~~li~~~l~~a~~~~~~id~Iav-t~gPG-~~~~L~vG~~~Ak~la~~~~~Pli~VnH 119 (363)
.-....+++|++++++.+|||.+-+ |..|. ..|+.- .-.++.|... +.+.+.|+.
T Consensus 56 ma~~Aa~~aL~~ag~~~~dIdllI~~t~~~d~~~P~~a--~~v~~~LGl~-~~~~fdi~~ 112 (326)
T PRK12879 56 LAIKAAERALARAGLDASDIDLIIVATTTPDYLFPSTA--SQVQARLGIP-NAAAFDINA 112 (326)
T ss_pred HHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCHHH--HHHHHHHCCC-CCEEEEECC
T ss_conf 99999999999759798899699995267898277599--9999986849-951454012
No 228
>PRK02406 DNA polymerase IV; Validated
Probab=29.06 E-value=39 Score=14.10 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=19.3
Q ss_pred CCCCCCEEEEEECCCHHHEEEEEEC
Q ss_conf 9888846887502602207788733
Q gi|254781038|r 1 MSKIKKTVIGIETSCDETAVAVVRR 25 (363)
Q Consensus 1 m~~~~~~ILgIETScd~tsvaiv~~ 25 (363)
|+...+.|+-||--|--.||....+
T Consensus 1 ~~~~~R~I~HiD~d~FyaSvE~~~~ 25 (355)
T PRK02406 1 INDTMRKIIHIDMDCFYAAVEMRDN 25 (355)
T ss_pred CCCCCEEEEEECCCHHHHHHEECCC
T ss_conf 9865318999846617666206338
No 229
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=29.03 E-value=39 Score=14.10 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEE-CCCCC-HHHH
Q ss_conf 999999999983898224536874-06643-0125
Q gi|254781038|r 63 LDILIKQTLLRANMQISDMDSIAV-TAGPG-LMGG 95 (363)
Q Consensus 63 l~~li~~~l~~a~~~~~~id~Iav-t~gPG-~~~~ 95 (363)
-....+++|++++++.+|||+|-| |.-|- .+|+
T Consensus 99 a~~AA~~AL~~Agi~~~dIDlIIvaT~tpd~~~Ps 133 (372)
T PRK07515 99 GVAAARQALERAGKTAADIDGVIVACSNMQRAYPA 133 (372)
T ss_pred HHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCC
T ss_conf 99999999998499989999999976888888972
No 230
>TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278 These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=28.85 E-value=38 Score=14.17 Aligned_cols=92 Identities=18% Similarity=0.242 Sum_probs=61.5
Q ss_pred HHCCCCCC-CCCEEEECCCCCHHHHHHHHHHHHH---HHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCE
Q ss_conf 98389822-4536874066430125677999999---9887514864333036776530132256799843999706874
Q gi|254781038|r 72 LRANMQIS-DMDSIAVTAGPGLMGGLIVGLMTAK---AISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHT 147 (363)
Q Consensus 72 ~~a~~~~~-~id~Iavt~gPG~~~~L~vG~~~Ak---~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT 147 (363)
+-.++..+ +=-.+.|..-=|-..+=+||+.+|= .++..-++. +|+ |-|.|=++.+++++ ||+--.|-=+..
T Consensus 205 EvTg~~~~~~grv~GV~T~RG~IgA~kvgva~AG~ss~~a~~AG~r-lPi---eSh~LQA~VsEplK-P~id~Vv~s~~~ 279 (407)
T TIGR01373 205 EVTGFIRRENGRVIGVETTRGFIGAKKVGVAVAGNSSVVAELAGFR-LPI---ESHVLQALVSEPLK-PIIDTVVMSNAV 279 (407)
T ss_pred CCCCEEEECCCEEEEEECCCCCCCCEEEEEEEECCHHHHHHHCCCC-CCH---HHHHHHEEECCCCC-CCCCCEEEECCC
T ss_conf 2023165068758865448741010378888717758989763742-662---11010111307888-521767850883
Q ss_pred EEEEECCCCCCEECCCCCCCC
Q ss_conf 799983756430002233630
Q gi|254781038|r 148 QILLVRDVAHYDRLGTTIDDA 168 (363)
Q Consensus 148 ~l~~~~~~~~~~ilg~T~Dda 168 (363)
..+.+++.+-=-++|.-+|--
T Consensus 280 h~Y~SQSDKG~LV~Ggg~D~y 300 (407)
T TIGR01373 280 HFYVSQSDKGELVIGGGIDGY 300 (407)
T ss_pred CEEEEEECCCCEEECCCCCCC
T ss_conf 068987214764775654765
No 231
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=28.79 E-value=16 Score=16.84 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=40.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHH
Q ss_conf 75422102458999999851120121068899999999999999999999999876214455236541334587999999
Q gi|254781038|r 213 LCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRAS 292 (363)
Q Consensus 213 ~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~ 292 (363)
+++.-..|+.......++.-. +++..-++-|...+-...++..+...++ +.. .....+++||+--. .
T Consensus 27 GfeVi~lG~~~s~eeiv~~A~---~e~ad~IglSsL~g~h~~~~~~l~~~L~---e~G--~~di~v~vGG~Ip~-----~ 93 (122)
T cd02071 27 GFEVIYTGLRQTPEEIVEAAI---QEDVDVIGLSSLSGGHMTLFPEVIELLR---ELG--AGDILVVGGGIIPP-----E 93 (122)
T ss_pred CCEEEECCCCCCHHHHHHHHH---HCCCCEEEEECCCCCHHHHHHHHHHHHH---HCC--CCCCEEEEECCCCH-----H
T ss_conf 976996799889999999999---7399899996465544789999999999---769--99846999456498-----9
Q ss_pred HHHHHHHCCCEEEECCHH
Q ss_conf 999998689889962878
Q gi|254781038|r 293 LIDLCVLHGFRFVAPPAR 310 (363)
Q Consensus 293 l~~~~~~~~~~~~~P~~~ 310 (363)
-....++.|+.-+|+|-.
T Consensus 94 d~~~l~~~Gv~~vf~pgt 111 (122)
T cd02071 94 DYELLKEMGVAEIFGPGT 111 (122)
T ss_pred HHHHHHHCCCCEEECCCC
T ss_conf 999999779988989588
No 232
>KOG2926 consensus
Probab=28.74 E-value=40 Score=14.07 Aligned_cols=28 Identities=18% Similarity=0.105 Sum_probs=19.3
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5523654133458799999999999868
Q gi|254781038|r 273 KQAVLVVSGGVASNHFIRASLIDLCVLH 300 (363)
Q Consensus 273 ~~~~lvv~GGVaaN~~LR~~l~~~~~~~ 300 (363)
-+++.||+|+|-+=++|++.-+++-..+
T Consensus 231 ~~~~~VvsG~~~~Le~lee~~~sf~~~r 258 (386)
T KOG2926 231 SPGQRVVSGLVKALESLEENAKSFKIRR 258 (386)
T ss_pred CCCCEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 7872795076888999999988640442
No 233
>pfam03988 DUF347 Repeat of Unknown Function (DUF347). This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=28.53 E-value=19 Score=16.29 Aligned_cols=30 Identities=37% Similarity=0.442 Sum_probs=22.5
Q ss_pred EECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 000223363002388889885288761035566
Q gi|254781038|r 159 DRLGTTIDDALGECFDKIAKSLGLPYPGGVEIE 191 (363)
Q Consensus 159 ~ilg~T~Dda~Ge~~DK~ar~Lgl~yPgGp~ie 191 (363)
.++.+|+-.+.|+.+++ .||++|.++-.+=
T Consensus 7 ~ilt~tlGtt~gD~l~~---~lglG~~~ss~if 36 (55)
T pfam03988 7 IILTTTLGTTLGDFLTD---SLGLGYAVSSAIF 36 (55)
T ss_pred HHHHHHHHHHHHHHHHH---CCCCCHHHHHHHH
T ss_conf 99999765667889883---1587649889999
No 234
>PRK03922 hypothetical protein; Provisional
Probab=28.23 E-value=26 Score=15.36 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=18.4
Q ss_pred CCCCCCCHHHHHHHHHHHCC
Q ss_conf 22336300238888988528
Q gi|254781038|r 162 GTTIDDALGECFDKIAKSLG 181 (363)
Q Consensus 162 g~T~Dda~Ge~~DK~ar~Lg 181 (363)
-+|.|||+|=|+-+++++|+
T Consensus 17 ves~dDAI~iAIseaGkrLn 36 (113)
T PRK03922 17 VESVDDAIGVAISEAGKRLN 36 (113)
T ss_pred CCCHHHHHHHHHHHHHHHCC
T ss_conf 55478889999999875438
No 235
>KOG1391 consensus
Probab=28.08 E-value=41 Score=13.99 Aligned_cols=76 Identities=24% Similarity=0.317 Sum_probs=42.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC-----CCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 621218714559999999969999999999838982245368740-----664301256779999999887514864333
Q gi|254781038|r 43 QHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVT-----AGPGLMGGLIVGLMTAKAISYVSHKPFYAI 117 (363)
Q Consensus 43 ~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt-----~gPG~~~~L~vG~~~Ak~la~~~~~Pli~V 117 (363)
.-+.|||-.--+.+-+-. ....+.+|+.+++..+.+|.+-+. ...|.+-.-.||+... .-.++|.+.|
T Consensus 15 aFGtfGG~LKg~~aTdL~---~~AakAAL~aa~v~~e~VD~VI~GNV~aSSsDgIYl~RHvGL~~G----vP~e~pALti 87 (396)
T KOG1391 15 AFGTFGGKLKGLSATDLG---VVAAKAALKAANVGAEAVDHVIMGNVLASSSDGIYLARHVGLRVG----VPKETPALTI 87 (396)
T ss_pred CCCCCCCCCCCCCHHHHH---HHHHHHHHHHCCCCHHHCCEEEEEEEEECCCCCEEEEECCCCCCC----CCCCCCCEEE
T ss_conf 444346401575444678---899998886438883233258871134125772675400353227----8676673343
Q ss_pred HHHHHHHH
Q ss_conf 03677653
Q gi|254781038|r 118 NHLEGHIL 125 (363)
Q Consensus 118 nH~~aH~~ 125 (363)
|.+.|-=.
T Consensus 88 NRLCGSGF 95 (396)
T KOG1391 88 NRLCGSGF 95 (396)
T ss_pred HHHHCCCH
T ss_conf 01313127
No 236
>KOG1394 consensus
Probab=28.07 E-value=41 Score=13.99 Aligned_cols=64 Identities=22% Similarity=0.176 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHCCCCCC-----CCCEEEECCCCCHHHHHHHHHHHHHHHHHHH-------CCCCCCCHHHHHHHHC
Q ss_conf 699999999998389822-----4536874066430125677999999988751-------4864333036776530
Q gi|254781038|r 62 VLDILIKQTLLRANMQIS-----DMDSIAVTAGPGLMGGLIVGLMTAKAISYVS-------HKPFYAINHLEGHILT 126 (363)
Q Consensus 62 ~l~~li~~~l~~a~~~~~-----~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~-------~~Pli~VnH~~aH~~~ 126 (363)
.....-+++|+.+++-.. |.+...|..|-|+ ++|-+-..++.-+...- =+|-+-+|---||+-.
T Consensus 97 ~al~aa~eAL~da~~~~~~~~e~dk~~~GV~iGtgm-g~l~~i~e~a~~~~~~g~rrvsPffVPkil~NM~ag~vsm 172 (440)
T KOG1394 97 LALTAAEEALKDAGLLDVNLSEEDKEKTGVLIGTGM-GDLEDIYETAQNLSEKGYRRVSPFFVPKILTNMAAGYVSM 172 (440)
T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHCEEECCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCHHHH
T ss_conf 999999999973688886412455441045851463-3299999999999872234338630006650365103345
No 237
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=27.84 E-value=41 Score=13.96 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEC-CCC-CHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 69999999999838982245368740-664-30125677999999988751486433303
Q gi|254781038|r 62 VLDILIKQTLLRANMQISDMDSIAVT-AGP-GLMGGLIVGLMTAKAISYVSHKPFYAINH 119 (363)
Q Consensus 62 ~l~~li~~~l~~a~~~~~~id~Iavt-~gP-G~~~~L~vG~~~Ak~la~~~~~Pli~VnH 119 (363)
.-....+++|++++++.+|||+|-+. ..| -..|+.- ...++.|.. .+.+.+.||-
T Consensus 55 ma~~Aa~~aL~~ag~~~~dIdlli~~t~t~d~~~P~~a--~~v~~~LGl-~~~~~fDi~~ 111 (319)
T PRK09352 55 LATEAAKKALEAAGIDPEDIDLIIVATTTPDYLFPSTA--CLVQARLGA-KNAPAFDLSA 111 (319)
T ss_pred HHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCHHH--HHHHHHHCC-CCCCEEEHHH
T ss_conf 99999999999759898899799997417899896699--999999789-9973753743
No 238
>pfam04475 DUF555 Protein of unknown function (DUF555). Family of uncharacterized, hypothetical archaeal proteins.
Probab=27.58 E-value=27 Score=15.24 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=18.5
Q ss_pred CCCCCCCHHHHHHHHHHHCC
Q ss_conf 22336300238888988528
Q gi|254781038|r 162 GTTIDDALGECFDKIAKSLG 181 (363)
Q Consensus 162 g~T~Dda~Ge~~DK~ar~Lg 181 (363)
-+|.|||+|=|+-+++++|+
T Consensus 16 ves~dDAI~iAIseaGkrLn 35 (102)
T pfam04475 16 VESVDDAIGVAISEAGKRLN 35 (102)
T ss_pred CCCHHHHHHHHHHHHHHHHC
T ss_conf 53178899999999988649
No 239
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=27.42 E-value=42 Score=13.91 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=30.0
Q ss_pred CCCCCCCCHHHHHH---HHHHHHHHHHHHHHHCCCCCCCCCEEEEC-CCCC
Q ss_conf 12187145599999---99969999999999838982245368740-6643
Q gi|254781038|r 45 GHYGGVVPEVAARA---HVDVLDILIKQTLLRANMQISDMDSIAVT-AGPG 91 (363)
Q Consensus 45 ~~~GGv~P~~A~~~---H~~~l~~li~~~l~~a~~~~~~id~Iavt-~gPG 91 (363)
..+-||.++-.+.. -...-....+++|+.++++.+|||.|-|+ .-|-
T Consensus 35 ~~rtGir~R~~a~~~e~~s~la~~Aa~~AL~~Agi~~~dIDlII~aT~tpd 85 (323)
T COG0332 35 ETRTGIRERRIAADDETTSDLAVEAARKALEDAGISPDDIDLIIVATSTPD 85 (323)
T ss_pred EEECCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCC
T ss_conf 530377112316999547789999999999986999899988999667866
No 240
>PRK05637 anthranilate synthase component II; Provisional
Probab=27.41 E-value=42 Score=13.91 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=27.9
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHCCCC
Q ss_conf 45368740664301256779999999887514864333---036776530132
Q gi|254781038|r 80 DMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAI---NHLEGHILTARL 129 (363)
Q Consensus 80 ~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~V---nH~~aH~~~~~l 129 (363)
+.|+|-.+-|||.+. -.|....---.+..++|++|| |-..++.+-+.+
T Consensus 44 ~pd~ivlSPGPg~P~--d~g~~~~~~~~~~~~iPILGICLGhQ~i~~~~Gg~v 94 (208)
T PRK05637 44 NPDLICLSPGPGYPA--DAGNMMALIERTLGQIPLLGICLGYQALIEYHGGKV 94 (208)
T ss_pred CCCEEEECCCCCCHH--HCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCEE
T ss_conf 999599999999957--775749999997356982211477899999709788
No 241
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=27.39 E-value=42 Score=13.91 Aligned_cols=11 Identities=18% Similarity=0.277 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999986
Q gi|254781038|r 289 IRASLIDLCVL 299 (363)
Q Consensus 289 LR~~l~~~~~~ 299 (363)
+...+..+.+.
T Consensus 262 ~~~av~~~~~~ 272 (317)
T COG0616 262 LDDAVKDAAEL 272 (317)
T ss_pred HHHHHHHHHHH
T ss_conf 88999999874
No 242
>cd01701 Pol_zeta Pol_zeta, a member of the Y-family of DNA polymerases. Y-family polymerases can transverse normal replication-blocking DNA lesions, such as cyclobutane pyrimidine dimers resulting from UV damage, at higher error rate. The Y-family has no 3'-5' exonuclease activity. Pol zeta has also been named Rev1; this subfamily is mainly present in eukaryotes.
Probab=27.32 E-value=42 Score=13.90 Aligned_cols=23 Identities=17% Similarity=0.032 Sum_probs=18.2
Q ss_pred CHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 87887725899999999999849
Q gi|254781038|r 308 PARLCTDNAVMIAWAALERMEAG 330 (363)
Q Consensus 308 ~~~~ctDNAaMIA~ag~~~~~~g 330 (363)
.+...||+..-|.-++...|+.-
T Consensus 366 tL~~pT~~~~~I~~~a~~Ll~~~ 388 (405)
T cd01701 366 TLGVATDDFGVIGKEAKALFRDL 388 (405)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 67876699999999999999970
No 243
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=27.30 E-value=42 Score=13.90 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEE-ECCCCCHHHH
Q ss_conf 699999999998389822453687-4066430125
Q gi|254781038|r 62 VLDILIKQTLLRANMQISDMDSIA-VTAGPGLMGG 95 (363)
Q Consensus 62 ~l~~li~~~l~~a~~~~~~id~Ia-vt~gPG~~~~ 95 (363)
.-....+++|++++++.+|||+|- +|..|.+.++
T Consensus 52 ma~~Aa~~aL~~ag~~~~dIDllI~~t~tpd~~~~ 86 (327)
T CHL00203 52 LAAEAANKALHKAGWSAKDIDLIILATSTPDDLFG 86 (327)
T ss_pred HHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCC
T ss_conf 99999999997549997898889995004676787
No 244
>PRK09209 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=27.20 E-value=41 Score=13.96 Aligned_cols=11 Identities=36% Similarity=0.758 Sum_probs=6.3
Q ss_pred CCCCCCCCCHH
Q ss_conf 21218714559
Q gi|254781038|r 44 HGHYGGVVPEV 54 (363)
Q Consensus 44 ~~~~GGv~P~~ 54 (363)
.+..+|++|=+
T Consensus 306 ~g~ssGvVpf~ 316 (785)
T PRK09209 306 KNSSGGVIPWI 316 (785)
T ss_pred CCCCCCCCCHH
T ss_conf 88489822399
No 245
>PRK09050 beta-ketoadipyl CoA thiolase; Validated
Probab=27.04 E-value=43 Score=13.87 Aligned_cols=73 Identities=23% Similarity=0.323 Sum_probs=43.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCEEEECCC--CCHHHHHHHHHHHHHHHHHHH----CCCCC
Q ss_conf 6212187145599999999699999999998-3898224536874066--430125677999999988751----48643
Q gi|254781038|r 43 QHGHYGGVVPEVAARAHVDVLDILIKQTLLR-ANMQISDMDSIAVTAG--PGLMGGLIVGLMTAKAISYVS----HKPFY 115 (363)
Q Consensus 43 ~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~-a~~~~~~id~Iavt~g--PG~~~~L~vG~~~Ak~la~~~----~~Pli 115 (363)
.-++|||..-.+-. .+.....++.++++ ++++.++||.|-+..- .|. -|.+.||..++.- .+|-+
T Consensus 13 P~g~~~G~l~~~~~---~~L~a~~i~~~l~r~~~l~~~~Id~vi~G~~~~~g~-----~g~n~aR~aal~aGlp~~vpa~ 84 (401)
T PRK09050 13 PIGRYGGALSSVRA---DDLGAVPLKALMERNPGVDWEAVDDVIYGCANQAGE-----DNRNVARMSALLAGLPVSVPGT 84 (401)
T ss_pred CCCCCCCCCCCCCH---HHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCCCCC-----CCCCHHHHHHHHCCCCCCCCEE
T ss_conf 43169997799988---999999999999735896989989599963776574-----5576999999977999888557
Q ss_pred CCHHHHHH
Q ss_conf 33036776
Q gi|254781038|r 116 AINHLEGH 123 (363)
Q Consensus 116 ~VnH~~aH 123 (363)
-||.+-+-
T Consensus 85 TVnr~C~S 92 (401)
T PRK09050 85 TINRLCGS 92 (401)
T ss_pred EEEHHHHH
T ss_conf 86013078
No 246
>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE; InterPro: IPR014286 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . This entry represents the clade of sigma factors called RpoE. These proteins are variously annotated as sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=26.98 E-value=34 Score=14.56 Aligned_cols=35 Identities=20% Similarity=0.091 Sum_probs=18.2
Q ss_pred EEEECCCCCH-HHH-HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC
Q ss_conf 6874066430-125-67799999998875148643330367765301322
Q gi|254781038|r 83 SIAVTAGPGL-MGG-LIVGLMTAKAISYVSHKPFYAINHLEGHILTARLT 130 (363)
Q Consensus 83 ~Iavt~gPG~-~~~-L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~ 130 (363)
+++-=+|-.- +|= -||+++||| ||+.+|---+-..
T Consensus 62 Al~~FRGdsaFYTWLyRIavNTAK-------------NyLVaq~Rr~p~~ 98 (192)
T TIGR02939 62 ALASFRGDSAFYTWLYRIAVNTAK-------------NYLVAQGRRPPTS 98 (192)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHH-------------HHHHHCCCCCCCC
T ss_conf 512355513678999999998877-------------7664247988744
No 247
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=26.54 E-value=19 Score=16.21 Aligned_cols=66 Identities=15% Similarity=-0.036 Sum_probs=38.9
Q ss_pred CCEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCC--CCCHHHHHHHHHHH
Q ss_conf 430002233630023888898852887610355666554057333458611106887542--21024589999998
Q gi|254781038|r 157 HYDRLGTTIDDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDF--SFSGLKTSVQKTIC 230 (363)
Q Consensus 157 ~~~ilg~T~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dF--SFSGLkTav~~~i~ 230 (363)
.+-++..|-|-.+-+.+-+-|+..|..+-- ++ ......|.+|. .+.++++.+ |=+|---.+.|++.
T Consensus 85 ~~LVIaATdd~~lN~~I~~~a~~~~ilvNv---vd----dp~~~~fi~Pa-iv~Rg~L~IAIST~G~SP~lAr~iR 152 (222)
T PRK05562 85 KHLIIIATDDEELNNKIRKHCDRLYKLYID---CS----DFKKGLCVIPY-QRSSKNMVFALNTKGGSPKTSVFIG 152 (222)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHCCEEEE---CC----CCCCCCEEECE-EEEECCEEEEEECCCCCHHHHHHHH
T ss_conf 739999479889999999999980998898---57----88768179770-9972897999989998979999999
No 248
>PRK08131 acetyl-CoA acetyltransferase; Provisional
Probab=26.52 E-value=43 Score=13.80 Aligned_cols=125 Identities=14% Similarity=0.202 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCC--CCHHHHHHHHHHHHHHHHHHHCCC----CCCCHHHHHHHHCCCC----
Q ss_conf 996999999999983898224536874066--430125677999999988751486----4333036776530132----
Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMDSIAVTAG--PGLMGGLIVGLMTAKAISYVSHKP----FYAINHLEGHILTARL---- 129 (363)
Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id~Iavt~g--PG~~~~L~vG~~~Ak~la~~~~~P----li~VnH~~aH~~~~~l---- 129 (363)
.+....+++++|++++++..+||.|.+..- +|. -|.+.||..++.-++| -+-||.+.+==+.+..
T Consensus 27 ~~L~a~~i~~~l~r~~i~~~~Id~vi~G~v~~~g~-----~~~n~aR~~al~aGlp~~vp~~tVnr~CaSGl~Ai~~Aa~ 101 (401)
T PRK08131 27 DDLAATVIRRLVEKSGFAGDDIEDVILGCTNQAGE-----DSRNVARNALLLAGLPVTVPGQTVNRLCASGLSAVIDAAR 101 (401)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCC-----CCCCHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHH
T ss_conf 99999999999997298989989899981466565-----4466999999966999888716875253578999999999
Q ss_pred --C-------------CCCCCCCEEEEEECCCEEE----EEEC-----CCCCCEECCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf --2-------------5679984399970687479----9983-----75643000223363002388889885288761
Q gi|254781038|r 130 --T-------------DDIAFPYLVLLVSGGHTQI----LLVR-----DVAHYDRLGTTIDDALGECFDKIAKSLGLPYP 185 (363)
Q Consensus 130 --~-------------~~~~~PfL~LlvSGGhT~l----~~~~-----~~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~yP 185 (363)
. +.-.-|++ +..+.+-. -..+ .+.+..+....-++.-|+.-|++|+..|+.-.
T Consensus 102 ~I~~G~~dvvlagGvEsMS~~P~~---~~~~~~~~~~~~~~~d~~~~~~~~~p~~~~~~~~~~Mg~tAe~~A~~~gisRe 178 (401)
T PRK08131 102 AITCGEGDLYLAGGVESMSRAPFV---MGKAESAFSRDAKVFDTTIGARFPNPKIVKQYGGDSMPETGDNVAREFGISRE 178 (401)
T ss_pred HHHCCCCCEEEEEEEECCCCCCHH---CCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCHH
T ss_conf 985799772588506503546410---15664444555421243000025880566650798378999999998598989
Q ss_pred HHHHHHHHHH
Q ss_conf 0355666554
Q gi|254781038|r 186 GGVEIEKAAL 195 (363)
Q Consensus 186 gGp~ie~~A~ 195 (363)
+.|.+|.
T Consensus 179 ---eqD~~A~ 185 (401)
T PRK08131 179 ---DADRFAA 185 (401)
T ss_pred ---HHHHHHH
T ss_conf ---9999999
No 249
>TIGR00169 leuB 3-isopropylmalate dehydrogenase; InterPro: IPR004429 Several NAD- or NADP-dependent dehydrogenases, including 3-isopropylmalate dehydrogenase, tartrate dehydrogenase, and the dimeric forms of isocitrate dehydrogenase, share a nucleotide binding domain unrelated to that of lactate dehydrogenase and its homologs. These enzymes dehydrogenate their substates at a H-C-OH site adjacent to a H-C-COOH site; the latter carbon, now adjacent to a carbonyl group, readily decarboxylates. Among these decarboxylating dehydrogenases of hydroxyacids, overall sequence homology indicates evolutionary history rather than actual substrate or cofactor specifity, which may be toggled experimentally by replacement of just a few amino acids. 3-isopropylmalate dehydrogenase is an NAD-dependent enzyme and should have a sequence resembling HGSAPDI around residue 340. The subtrate binding loop should include a sequence resembling E[KQR]X(0,1)LLXXR around residue 115.; GO: 0003862 3-isopropylmalate dehydrogenase activity, 0009098 leucine biosynthetic process, 0005737 cytoplasm.
Probab=26.26 E-value=42 Score=13.91 Aligned_cols=58 Identities=19% Similarity=0.176 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHCC-CCCCEEEEEHHHHHHHHHHHHHHHHHH-HCCCEEEECCHH---HCCCHHHHH
Q ss_conf 9999999999876214-455236541334587999999999998-689889962878---877258999
Q gi|254781038|r 256 QARLKQGFLLFRKAFP-HKQAVLVVSGGVASNHFIRASLIDLCV-LHGFRFVAPPAR---LCTDNAVMI 319 (363)
Q Consensus 256 ~~k~~~a~~~~~~~~~-~~~~~lvv~GGVaaN~~LR~~l~~~~~-~~~~~~~~P~~~---~ctDNAaMI 319 (363)
..-.+.|+...++..+ .++-+|==+==-.+.+.=|+..+++.+ +| |+.+ +=.|||||+
T Consensus 171 ~RIaR~AFe~A~kr~~P~~vTSvDKANVL~sS~LWR~~V~e~~~~eY------Pdv~L~H~yiDnAAM~ 233 (370)
T TIGR00169 171 ERIARVAFEMARKRRKPLKVTSVDKANVLESSRLWRKTVEEIAKEEY------PDVELEHQYIDNAAMQ 233 (370)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCC------CCEEECCCHHHHHHHH
T ss_conf 78999999999854889853210012045543789999999984688------8057302158788767
No 250
>PRK06504 acetyl-CoA acetyltransferase; Provisional
Probab=26.26 E-value=44 Score=13.77 Aligned_cols=78 Identities=14% Similarity=0.173 Sum_probs=48.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC-CCCHHHHHHHHHHHHHHHHHHHC----CCCCCC
Q ss_conf 6212187145599999999699999999998389822453687406-64301256779999999887514----864333
Q gi|254781038|r 43 QHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTA-GPGLMGGLIVGLMTAKAISYVSH----KPFYAI 117 (363)
Q Consensus 43 ~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~-gPG~~~~L~vG~~~Ak~la~~~~----~Pli~V 117 (363)
..+++||....+-. .+.....+++++++++++..+||.|-+.. .++-.. |.+.|+..++..+ +|-+-|
T Consensus 13 P~g~~~G~l~~~~~---~~L~~~a~~~~l~r~~v~~~~Id~vi~G~v~~~g~~----~~n~aR~~~l~aglp~~vpa~tv 85 (390)
T PRK06504 13 AGGRKGGRLAGWHP---ADLAAQVLDALVDRSGADPAQIEDVIMGCVSQAGEQ----AMNVARNAVLASKLPESVPGTSI 85 (390)
T ss_pred CCCCCCCCCCCCCH---HHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCC----CCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 55479998899989---999999999999880989899898999917874533----24099999997799976754777
Q ss_pred HHHHHHHHCC
Q ss_conf 0367765301
Q gi|254781038|r 118 NHLEGHILTA 127 (363)
Q Consensus 118 nH~~aH~~~~ 127 (363)
|..-+-=+.+
T Consensus 86 n~~C~SGl~A 95 (390)
T PRK06504 86 DRQCGSSQQA 95 (390)
T ss_pred ECCCCCHHHH
T ss_conf 3467858999
No 251
>TIGR00232 tktlase_bact transketolase; InterPro: IPR005478 Transketolase (EC 2.2.1.1) (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. This group includes two proteins from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. ; GO: 0004802 transketolase activity.
Probab=26.13 E-value=44 Score=13.76 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=31.0
Q ss_pred CCEEEECCCC-CHHHHHHHHHHHH-HHHHHHHCCCCCCC
Q ss_conf 5368740664-3012567799999-99887514864333
Q gi|254781038|r 81 MDSIAVTAGP-GLMGGLIVGLMTA-KAISYVSHKPFYAI 117 (363)
Q Consensus 81 id~Iavt~gP-G~~~~L~vG~~~A-k~la~~~~~Pli~V 117 (363)
-..|=+|.|| |-.-+--||+..| |.||-.+|.|=..|
T Consensus 102 ~~Gve~TTGPLGQGianAVGmA~A~~~LAa~fn~~~~~~ 140 (675)
T TIGR00232 102 TAGVEATTGPLGQGIANAVGMAIAERTLAATFNKPGFEI 140 (675)
T ss_pred CCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 887023118730135779999999999999708796944
No 252
>PRK06205 acetyl-CoA acetyltransferase; Provisional
Probab=25.96 E-value=44 Score=13.74 Aligned_cols=72 Identities=13% Similarity=0.238 Sum_probs=45.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC--CCHHHHHHHHHHHHHHHHHHHC----CCCCC
Q ss_conf 62121871455999999996999999999983898224536874066--4301256779999999887514----86433
Q gi|254781038|r 43 QHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAG--PGLMGGLIVGLMTAKAISYVSH----KPFYA 116 (363)
Q Consensus 43 ~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~g--PG~~~~L~vG~~~Ak~la~~~~----~Pli~ 116 (363)
..++|||..-.+- =.+....+++++|++++++..+||.|-+... .|- +-+.||..++.-+ +|-+-
T Consensus 13 P~g~~~G~l~~~~---~~~L~a~~ik~~l~r~~i~~~~Id~Vi~G~~~~~g~------~~~~aR~aaL~aGlp~~vpa~t 83 (404)
T PRK06205 13 PVGRFGGAFKPVP---AEELAATVLRALVERTGIDPARVDDVIFGQCYPNGE------APAIGRVAALDAGLPVTVPGMQ 83 (404)
T ss_pred CCCCCCCCCCCCC---HHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCC------CCHHHHHHHHHCCCCCCCCEEE
T ss_conf 5206799779998---899999999999998198989989799994265676------7779999999779898875588
Q ss_pred CHHHHHH
Q ss_conf 3036776
Q gi|254781038|r 117 INHLEGH 123 (363)
Q Consensus 117 VnH~~aH 123 (363)
||.+-+-
T Consensus 84 Vnr~C~S 90 (404)
T PRK06205 84 LDRRCGS 90 (404)
T ss_pred EECCCCC
T ss_conf 8150533
No 253
>PRK13359 beta-ketoadipyl CoA thiolase; Provisional
Probab=25.91 E-value=44 Score=13.73 Aligned_cols=75 Identities=21% Similarity=0.281 Sum_probs=44.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCEEEECCC--CCHHHHHHHHHHHHHHHHHHHC----CCCCC
Q ss_conf 212187145599999999699999999998-3898224536874066--4301256779999999887514----86433
Q gi|254781038|r 44 HGHYGGVVPEVAARAHVDVLDILIKQTLLR-ANMQISDMDSIAVTAG--PGLMGGLIVGLMTAKAISYVSH----KPFYA 116 (363)
Q Consensus 44 ~~~~GGv~P~~A~~~H~~~l~~li~~~l~~-a~~~~~~id~Iavt~g--PG~~~~L~vG~~~Ak~la~~~~----~Pli~ 116 (363)
.+++||..-..- =.+....++++++++ ++++.++||.|-+... .|.- |.+.||..++.-+ +|-+-
T Consensus 14 ~g~~~G~l~~~~---~~~L~a~~i~~~l~r~~~i~~~~Id~Vi~G~~~~~g~~-----g~n~aR~~aL~aGlp~~vpa~T 85 (400)
T PRK13359 14 IGRYGGALSSVR---ADDLGAVPLKALVERNRDVDWAAIDDVIYGCANQAGED-----NRNVARMSLLLAGLPHGVPGTT 85 (400)
T ss_pred CCCCCCCCCCCC---HHHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCCCCCC-----CCCHHHHHHHHCCCCCCCCEEE
T ss_conf 536998679998---89999999999997269979899997999827755654-----5768999999769998876267
Q ss_pred CHHHHHHHHC
Q ss_conf 3036776530
Q gi|254781038|r 117 INHLEGHILT 126 (363)
Q Consensus 117 VnH~~aH~~~ 126 (363)
||.+-+==+.
T Consensus 86 Vnr~C~SGl~ 95 (400)
T PRK13359 86 INRLCGSGMD 95 (400)
T ss_pred ECCHHHHHHH
T ss_conf 6132114999
No 254
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=25.75 E-value=45 Score=13.71 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=16.9
Q ss_pred CEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHH
Q ss_conf 236541334587999999999998689889962878
Q gi|254781038|r 275 AVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPAR 310 (363)
Q Consensus 275 ~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~ 310 (363)
.-++++==|+ +..+.|++.+++.|+++...++.
T Consensus 49 DvilLaPQv~---~~~~~lk~~ad~~Gi~v~~i~~~ 81 (99)
T cd05565 49 DLVILAPQMA---SYYDELKKDTDRLGIKLVTTTGK 81 (99)
T ss_pred CEEEECHHHH---HHHHHHHHHHHHCCCEEEEECHH
T ss_conf 9999985088---88999999999839918870834
No 255
>cd01914 HCP Hybrid cluster protein (HCP), formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. HCP has three structural domains, an N-terminal alpha-helical domain, and two similar domains comprising a central beta-sheet flanked by alpha-helices. HCP contains two iron-sulfur clusters, one of which is a [Fe4-S4] cubane cluster similar to that of carbon monoxide dehydrogenase (CODH). The second cluster, referred to as the hybrid cluster, is a hybrid [Fe4-S2-O2] center located at the interface of the three domains. Although the hybrid cluster is buried within the protein, it is accessible through a large hydrophobic cavity.
Probab=25.74 E-value=35 Score=14.47 Aligned_cols=98 Identities=21% Similarity=0.288 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCC-C---------EEEE--
Q ss_conf 068899999999999999999999999876214455236541334587999999999998689-8---------8996--
Q gi|254781038|r 239 DIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHG-F---------RFVA-- 306 (363)
Q Consensus 239 ~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~-~---------~~~~-- 306 (363)
+...+--.|-+..+-.+..|+..|++ ..+++.+.+.||--.-+.=|+...+++++-- - ++.|
T Consensus 242 ~~~~i~~GF~h~~vl~~Ad~iv~aVK------~G~Ir~ffligGCDG~~~~R~Yyte~a~~~P~DtvILTl~CgKyRfn~ 315 (423)
T cd01914 242 ESGTITTGFAHNQVLAVADKVVEAVK------SGKIRHFFVVGGCDGRHKGRNYYTEFAEKLPKDTVILTLGCGKYRFNK 315 (423)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHH------CCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCC
T ss_conf 89858726348889876689999996------489746999812689899863489999878997299864322331356
Q ss_pred ------------CCHHHCCC--HHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf ------------28788772--589999999999984999887620023578
Q gi|254781038|r 307 ------------PPARLCTD--NAVMIAWAALERMEAGLPADDLSISPRSRW 344 (363)
Q Consensus 307 ------------P~~~~ctD--NAaMIA~ag~~~~~~g~~~~~~~~~~~~rw 344 (363)
-+..=|-| -|+.||.+=-+.|.-+. +++-++..-.|
T Consensus 316 ld~G~I~GiPRlLD~GQCNDsysai~iA~aLaeaf~~~V--NdLPls~vlSW 365 (423)
T cd01914 316 LDLGDIGGIPRLLDAGQCNDSYSAIVIALALAEAFGCDV--NDLPLSLVLSW 365 (423)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHH
T ss_conf 776675883443236665448899999999999868995--44746576789
No 256
>PRK06690 acetyl-CoA acetyltransferase; Provisional
Probab=25.62 E-value=45 Score=13.70 Aligned_cols=106 Identities=15% Similarity=0.006 Sum_probs=51.2
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC----CCCCHHHHHHHHCCCCC--CCCCCCCEEEEEECCCEEEEE
Q ss_conf 224536874066430125677999999988751486----43330367765301322--567998439997068747999
Q gi|254781038|r 78 ISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKP----FYAINHLEGHILTARLT--DDIAFPYLVLLVSGGHTQILL 151 (363)
Q Consensus 78 ~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~P----li~VnH~~aH~~~~~l~--~~~~~PfL~LlvSGGhT~l~~ 151 (363)
..+||.|-+..-= -.|-+.||..++.-++| -+-||.+-+-=+.+... ..+.-=.--+.+.||--..-.
T Consensus 41 ~~~Id~vi~G~v~------~~g~n~aR~aaL~aGlp~~vp~~tVnr~C~SGl~Av~~aa~~I~~G~~dvviAGGvEsmS~ 114 (361)
T PRK06690 41 ERAIDDVILGNVV------GPGGNVARLSALEAGLGLHIPGVTIDRQCGAGLEAIRTACHFIQGGAGKCYIAGGVESTST 114 (361)
T ss_pred CCCCCEEEEEECC------CCCCHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHCC
T ss_conf 1116859999567------7675099999997599988875888753158899999999999679999899847014012
Q ss_pred E----CCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 8----3756430002233630023888898852887610355666554
Q gi|254781038|r 152 V----RDVAHYDRLGTTIDDALGECFDKIAKSLGLPYPGGVEIEKAAL 195 (363)
Q Consensus 152 ~----~~~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~ 195 (363)
+ +.....+-+ -|..-|++-|.+|+..|+.- ...|.+|.
T Consensus 115 ~P~~~~~~~~~~~~---~d~~MG~tAE~vA~~~~isR---e~qDe~A~ 156 (361)
T PRK06690 115 SPFQNRARFSPETI---GDPDMGVAAEYVAERYNITR---EMQDEYAC 156 (361)
T ss_pred CCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHCCCH---HHHHHHHH
T ss_conf 52114567785434---79658999999999849799---99999999
No 257
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=25.55 E-value=45 Score=13.69 Aligned_cols=50 Identities=20% Similarity=0.123 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEECC-CCCHHHHHHHHHHHHHHHHHH--HCCCCCCC
Q ss_conf 9699999999998389822453687406-643012567799999998875--14864333
Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMDSIAVTA-GPGLMGGLIVGLMTAKAISYV--SHKPFYAI 117 (363)
Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id~Iavt~-gPG~~~~L~vG~~~Ak~la~~--~~~Pli~V 117 (363)
+.+...++++-+. ..|.+|-.-. .||. ++..--...+.|... .++|++..
T Consensus 32 ~~l~~~l~~A~~D-----~~ik~vvL~i~s~gg--~~~~~~ei~~ai~~~k~~gKpVva~ 84 (222)
T cd07018 32 RDLLEALEKAAED-----DRIKGIVLDLDGLSG--GLAKLEELRQALERFRASGKPVIAY 84 (222)
T ss_pred HHHHHHHHHHHCC-----CCCCEEEEECCCCCC--CHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 9999999998339-----996389996689997--6999999999999998609939999
No 258
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=25.53 E-value=45 Score=13.68 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEECC----CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 9699999999998389822453687406----643012567799999998875148643330367
Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMDSIAVTA----GPGLMGGLIVGLMTAKAISYVSHKPFYAINHLE 121 (363)
Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id~Iavt~----gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~ 121 (363)
+.|...++++|++.++++.+|..||--. .||+ ..+|..+++|+.-++--|
T Consensus 17 e~I~~ai~~~l~~~~l~~~~I~~iaSid~K~dE~gl-----------l~~a~~l~~pl~~f~~ee 70 (126)
T PRK07027 17 EQIEAAIRAALAQLPLASAEVRVVATLDLKADEAGL-----------LALCARRGWPLVAFSAAQ 70 (126)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHEEEEECCCCCHHH-----------HHHHHHHCCCEEEECHHH
T ss_conf 999999999999869997881114741042898999-----------999998199879976999
No 259
>PRK09954 hypothetical protein; Provisional
Probab=25.41 E-value=45 Score=13.67 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=18.1
Q ss_pred EEECCCCCHHH--HHHHHHHHHHHHHHHHCCCCC
Q ss_conf 87406643012--567799999998875148643
Q gi|254781038|r 84 IAVTAGPGLMG--GLIVGLMTAKAISYVSHKPFY 115 (363)
Q Consensus 84 Iavt~gPG~~~--~L~vG~~~Ak~la~~~~~Pli 115 (363)
+.-|.-||-.. .=-+|.+.|..||. ++.+..
T Consensus 79 ~~~~SNpg~i~~s~GGvGrNiA~nLar-LG~~v~ 111 (362)
T PRK09954 79 PQAASHPGTIHCSAGGVGRNIAHNLAL-LGRDVH 111 (362)
T ss_pred CCCCCCCCEEEECCCCHHHHHHHHHHH-CCCCEE
T ss_conf 569999963688888489999999997-699769
No 260
>KOG3339 consensus
Probab=25.22 E-value=31 Score=14.86 Aligned_cols=15 Identities=53% Similarity=0.764 Sum_probs=11.9
Q ss_pred CCCCEEEEEECCCEE
Q ss_conf 998439997068747
Q gi|254781038|r 134 AFPYLVLLVSGGHTQ 148 (363)
Q Consensus 134 ~~PfL~LlvSGGhT~ 148 (363)
.++-++++=|||||-
T Consensus 38 s~~~lVvlGSGGHT~ 52 (211)
T KOG3339 38 SLSTLVVLGSGGHTG 52 (211)
T ss_pred CCEEEEEECCCCCHH
T ss_conf 610899986897689
No 261
>cd00424 Pol_Y Y-family of DNA polymerases. Pol_Y's can transverse replication-blocking DNA lesions, such as cyclobutane pyrimidine dimers resulting from UV damage, at the cost of an elevated error rate. The Y-family has no 3'-5' exonuclease activity. In addition to possessing a topology akin to a right hand, with "thumb", "fingers" and "palm" motifs, like polymerases from the A-, B-, C- and X-families, the Y-family has a unique "little finger" motif. Expression of Y-family polymerases is often induced by DNA damage. These polymerases are phylogenetically unrelated to classical DNA polymerases.
Probab=25.12 E-value=46 Score=13.63 Aligned_cols=23 Identities=9% Similarity=0.018 Sum_probs=14.8
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 78877258999999999998499
Q gi|254781038|r 309 ARLCTDNAVMIAWAALERMEAGL 331 (363)
Q Consensus 309 ~~~ctDNAaMIA~ag~~~~~~g~ 331 (363)
+.+-|++..=|--++.+.|++-+
T Consensus 303 l~~~t~~~~~l~~~a~~Ll~~~~ 325 (341)
T cd00424 303 ILYSESNNLLLLRVLDRLLRKLL 325 (341)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 78865899999999999999975
No 262
>PRK08242 acetyl-CoA acetyltransferase; Validated
Probab=25.11 E-value=46 Score=13.63 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECC-CC-CHHHHHHHHHHHHHHHHHHHC----CCCCCCHHHHHH
Q ss_conf 99699999999998389822453687406-64-301256779999999887514----864333036776
Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMDSIAVTA-GP-GLMGGLIVGLMTAKAISYVSH----KPFYAINHLEGH 123 (363)
Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id~Iavt~-gP-G~~~~L~vG~~~Ak~la~~~~----~Pli~VnH~~aH 123 (363)
.+....++++++++++++.++||.|-+.. -| |. -|.+.||..++.-+ +|-+-||.+-+-
T Consensus 29 ~~L~a~~i~~~l~r~~i~~~~Id~vi~G~v~~~g~-----~g~n~aR~~al~aGlp~~vpa~TVnr~C~S 93 (402)
T PRK08242 29 VRLAAGLLNALRDRNGLDTAAVDDVVLGCVTPVGD-----QGADIARTAVLAAGLPETVPGVQINRFCAS 93 (402)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCC-----CCCCHHHHHHHHCCCCCCCCEEEECCCCHH
T ss_conf 99999999999987098989999799980776554-----457799999997699988864788450557
No 263
>PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional
Probab=24.91 E-value=46 Score=13.61 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCC--EEEECCCCCH
Q ss_conf 699999999998389822453--6874066430
Q gi|254781038|r 62 VLDILIKQTLLRANMQISDMD--SIAVTAGPGL 92 (363)
Q Consensus 62 ~l~~li~~~l~~a~~~~~~id--~Iavt~gPG~ 92 (363)
......+++++++++..+++| -+++-.|=+.
T Consensus 137 ~al~Aa~eAl~DAgl~~~~~~~~r~Gv~iGs~~ 169 (477)
T PTZ00050 137 YAVAATRLAIDDAKIDLEKIDCDKTGTIIGSGI 169 (477)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCC
T ss_conf 999999999996799954367101534870487
No 264
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=24.81 E-value=47 Score=13.60 Aligned_cols=48 Identities=15% Similarity=0.332 Sum_probs=28.9
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHCCCC
Q ss_conf 45368740664301256779999999887514864333---036776530132
Q gi|254781038|r 80 DMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAI---NHLEGHILTARL 129 (363)
Q Consensus 80 ~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~V---nH~~aH~~~~~l 129 (363)
+.|+|-.+-|||.+.-.-.-....+. +..++|++|| |-+-||.+-+.+
T Consensus 43 ~p~~ivLSpGPG~P~~~~~~~~~i~~--~~~~iPILGIClG~Q~ia~~~Gg~v 93 (191)
T PRK06774 43 APSHVVISPGPCTPNEAGISLAVIRH--FADKLPILGVCLGHQALGQAFGARV 93 (191)
T ss_pred CCCEEEECCCCCCHHHHCCHHHHHHH--HCCCCCEEEEHHHHHHHHHHCCCEE
T ss_conf 99969999999896790730689997--4469978861687999865609849
No 265
>PRK07300 consensus
Probab=24.60 E-value=47 Score=13.57 Aligned_cols=129 Identities=23% Similarity=0.255 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC---CCCCCCEEEEEECCCEEEEEECCCCCCEECCCCCC
Q ss_conf 430125677999999988751486433303677653013225---67998439997068747999837564300022336
Q gi|254781038|r 90 PGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTD---DIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTID 166 (363)
Q Consensus 90 PG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~---~~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~D 166 (363)
|-++.-|+.-+...|-+-.++|+|++.+.--||-=..+-+.. ...-+|=++.|||-.-.+=++.+... ++-.-.+
T Consensus 84 ~~~P~~l~~Q~~~i~~~~~~~~i~~~~~~g~EADDvi~tlak~a~~~~~~~~v~Ivs~DkD~~QLV~~~v~--v~~~~~~ 161 (880)
T PRK07300 84 AKTPDEFREQFPYIREMLTALGIAYYELEHYEADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTV--VEISKKG 161 (880)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEE--EEECCCC
T ss_conf 99988999999999999998799882528914999999999999964999718997489861610769858--9746899
Q ss_pred CCHHHHHH--HHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 30023888--89885288761035566655405733345861110688754221024589999998511
Q gi|254781038|r 167 DALGECFD--KIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFD 233 (363)
Q Consensus 167 da~Ge~~D--K~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~ 233 (363)
..--+.|| .|-...|++ | ...+|-+|..||.... +|=+.+ . |.|||. +++++.+
T Consensus 162 ~~~~~~~~~~~v~ek~GV~-P-~qiiD~lAL~GDsSDN---IPGVpG--I-----G~KTA~-kLL~eyG 217 (880)
T PRK07300 162 VAEFEEFTPAYLMEKMGLT-P-NQFIDLKALMGDKSDN---IPGVTK--I-----GEKTGL-KLLHEFG 217 (880)
T ss_pred CCCCEECCHHHHHHHHCCC-H-HHHHHHHHHCCCCCCC---CCCCCC--C-----CHHHHH-HHHHHCC
T ss_conf 7412105899999997889-8-9999999980886246---778898--5-----369999-9999778
No 266
>PRK06631 consensus
Probab=24.51 E-value=47 Score=13.56 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=24.4
Q ss_pred CCCCCCEEEEEECCCHH-------HEEEEEECCCCCCEEEEEEEECCCCC
Q ss_conf 98888468875026022-------07788733888841898873113346
Q gi|254781038|r 1 MSKIKKTVIGIETSCDE-------TAVAVVRRKDSHGEILAEAVLSQIDQ 43 (363)
Q Consensus 1 m~~~~~~ILgIETScd~-------tsvaiv~~~~~~~~il~~~~~sq~~~ 43 (363)
|+.|+.+||-+||+-=+ ..++.|+.. ++.+..+...+++.+
T Consensus 1 ~~~mr~VvlD~ETTGl~~~~gdrIIEIgav~~~--~~~~t~~~f~~~inP 48 (229)
T PRK06631 1 MSSLREIILDTETTGLDPQQGHRIVEIGAIEMV--NKVLTGRNFHFYINP 48 (229)
T ss_pred CCCCCEEEEEEECCCCCCCCCCEEEEEEEEEEE--CCEEECCEEEEEECC
T ss_conf 987888999825799899999879999999999--998804379999898
No 267
>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.
Probab=24.33 E-value=47 Score=13.54 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99699999999998389822453
Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMD 82 (363)
Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id 82 (363)
.+.+.....++|+.+++...+++
T Consensus 72 ~rl~l~aa~~Al~dAgl~~~~~~ 94 (406)
T cd00834 72 AQFALAAAEEALADAGLDPEELD 94 (406)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 99999999999997599823448
No 268
>PRK05755 DNA polymerase I; Provisional
Probab=24.29 E-value=48 Score=13.53 Aligned_cols=135 Identities=22% Similarity=0.212 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC------------------CCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 559999999969999999999838982245368740------------------66430125677999999988751486
Q gi|254781038|r 52 PEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVT------------------AGPGLMGGLIVGLMTAKAISYVSHKP 113 (363)
Q Consensus 52 P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt------------------~gPG~~~~L~vG~~~Ak~la~~~~~P 113 (363)
|.=|..-....|..++++ - ..+.++|. ..|.++.-|..-+...|-+..++|+|
T Consensus 33 ~tnai~Gf~~~l~~~~~~----~-----~p~~~~v~fD~~~~tfR~~~y~~YKa~R~~~P~~l~~Q~~~i~~~l~~~gi~ 103 (889)
T PRK05755 33 PTGAVYGFLNMLLKLLKD----E-----KPTHIAVAFDAKGKTFRHELYPEYKANRPPMPEDLREQIPLLREALEALGIP 103 (889)
T ss_pred CCCCHHHHHHHHHHHHHH----C-----CCCEEEEEECCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 725299999999999986----2-----9988999963989963521055642799999989999999999999987998
Q ss_pred CCCCHHHHHHHHCCCCCCCCC-CCCEEEEEECCCEEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 433303677653013225679-9843999706874799983756430002233630023888898852887610355666
Q gi|254781038|r 114 FYAINHLEGHILTARLTDDIA-FPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAKSLGLPYPGGVEIEK 192 (363)
Q Consensus 114 li~VnH~~aH~~~~~l~~~~~-~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~ 192 (363)
++.+.-.||-=..+-+..... .-+=++.|||---.+=++.+.. .++ .+ .-|+.+|.-+..=-++.+.-..+|-
T Consensus 104 ~~~~~g~EADDii~tla~~~~~~~~~v~i~s~DkD~~QLv~~~v--~~~-~~---~k~~~~~~~~v~ek~Gv~P~q~~D~ 177 (889)
T PRK05755 104 LLEVEGYEADDVIGTLAKQAEAAGFEVLIVTGDKDLLQLVDDNV--TVL-NT---MKNERIDPEGVIEKYGVTPEQIIDF 177 (889)
T ss_pred EEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHCCCCE--EEE-EC---CCCCEECHHHHHHHHCCCHHHHHHH
T ss_conf 86468923999999999999977995999808987856188986--999-89---9992858999999979698999999
Q ss_pred HHHHCCCCC
Q ss_conf 554057333
Q gi|254781038|r 193 AALMGDGKR 201 (363)
Q Consensus 193 ~A~~g~~~~ 201 (363)
+|..||...
T Consensus 178 ~aL~GD~sD 186 (889)
T PRK05755 178 LALMGDSSD 186 (889)
T ss_pred HHHCCCCCC
T ss_conf 998088645
No 269
>pfam00205 TPP_enzyme_M Thiamine pyrophosphate enzyme, central domain. The central domain of TPP enzymes contains a 2-fold Rossman fold.
Probab=24.26 E-value=48 Score=13.53 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=20.4
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHH
Q ss_conf 36541334587999999999998689889962878
Q gi|254781038|r 276 VLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPAR 310 (363)
Q Consensus 276 ~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~ 310 (363)
-++++|+-+....-.+.+.++++..+++++..+..
T Consensus 14 Pvii~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~ 48 (138)
T pfam00205 14 PVILVGGGVRRSGASEELRALAEKLGIPVVTTLMG 48 (138)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 19998978352218999999999849987921112
No 270
>COG0146 HyuB N-methylhydantoinase B/acetone carboxylase, alpha subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.20 E-value=32 Score=14.68 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=11.9
Q ss_pred HHEEEEEECCCCCCEEEEEE
Q ss_conf 20778873388884189887
Q gi|254781038|r 17 ETAVAVVRRKDSHGEILAEA 36 (363)
Q Consensus 17 ~tsvaiv~~~~~~~~il~~~ 36 (363)
|-|+||+ |.+|.++++.
T Consensus 39 D~scAI~---d~~G~lVA~a 55 (563)
T COG0146 39 DFSCAIF---DAEGNLVAQA 55 (563)
T ss_pred CEEEEEE---CCCCCEECCC
T ss_conf 3069998---7988846048
No 271
>KOG3147 consensus
Probab=24.15 E-value=48 Score=13.51 Aligned_cols=13 Identities=31% Similarity=0.227 Sum_probs=5.8
Q ss_pred CHHHHHHHHHHHC
Q ss_conf 0023888898852
Q gi|254781038|r 168 ALGECFDKIAKSL 180 (363)
Q Consensus 168 a~Ge~~DK~ar~L 180 (363)
.+-||-|+-++.|
T Consensus 119 ~~~~~a~~ye~~l 131 (252)
T KOG3147 119 DAEEAADLYEKEL 131 (252)
T ss_pred CHHHHHHHHHHHH
T ss_conf 7888999999999
No 272
>PRK06633 acetyl-CoA acetyltransferase; Provisional
Probab=24.04 E-value=48 Score=13.50 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=47.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCC----CCCCCH
Q ss_conf 6212187145599999999699999999998389822453687406643012567799999998875148----643330
Q gi|254781038|r 43 QHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHK----PFYAIN 118 (363)
Q Consensus 43 ~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~----Pli~Vn 118 (363)
..++|||-.-.. .-.+....++++++++++++.++||.|-+..--. .+ -|.+.||..++..++ |-+-||
T Consensus 14 P~g~~~G~l~~~---~~~~L~a~vi~~~l~r~~i~p~~Id~Vi~G~v~~--~~--~g~n~AR~aaL~aGlp~~vp~~TVn 86 (392)
T PRK06633 14 AFGSFMGSLSTT---PAPMLAAHLIKDILQNSKIDPALVNEVILGQVIT--GG--SGQNPARQTLIHAGIPKEVPGYTIN 86 (392)
T ss_pred CCCCCCCCCCCC---CHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCC--CC--CCCCHHHHHHHHCCCCCCCCEEEEC
T ss_conf 012679877889---8899999999999987499989999899991575--66--5666999999976999888726887
Q ss_pred HHHHH
Q ss_conf 36776
Q gi|254781038|r 119 HLEGH 123 (363)
Q Consensus 119 H~~aH 123 (363)
.+-+-
T Consensus 87 r~C~S 91 (392)
T PRK06633 87 KVCGS 91 (392)
T ss_pred CCCHH
T ss_conf 73379
No 273
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=23.99 E-value=48 Score=13.49 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=32.8
Q ss_pred HHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHH-HHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 999999983898224536874066430125677-9999999887514864333036
Q gi|254781038|r 66 LIKQTLLRANMQISDMDSIAVTAGPGLMGGLIV-GLMTAKAISYVSHKPFYAINHL 120 (363)
Q Consensus 66 li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~v-G~~~Ak~la~~~~~Pli~VnH~ 120 (363)
.+++++++.++.+.++ ...-.-|++.|||-+ ...+-+++|- +++|++||-=.
T Consensus 89 ~~~~~l~~~~~~~~e~--~~~e~~p~lgGGLGrLAgcfldS~a~-Lg~P~~G~Gl~ 141 (750)
T COG0058 89 DVQEALKELGYFLMEF--GEHESDPGLGGGLGRLAGCFLDSAAD-LGLPLTGYGLR 141 (750)
T ss_pred HHHHHHHHHHCCHHHH--HHCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEEE
T ss_conf 7776567541146987--60255764452088888867778875-69980688853
No 274
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=23.93 E-value=48 Score=13.49 Aligned_cols=60 Identities=13% Similarity=0.034 Sum_probs=34.8
Q ss_pred HHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH--CCCCCCCHHHHHHHHCC
Q ss_conf 9999983898224536874066430125677999999988751--48643330367765301
Q gi|254781038|r 68 KQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVS--HKPFYAINHLEGHILTA 127 (363)
Q Consensus 68 ~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~--~~Pli~VnH~~aH~~~~ 127 (363)
+..+.-+.+..++.|+|-+.=|-|.+--|.--....+-|.+.+ ++|+-.|.|=-+=++..
T Consensus 82 ~~t~~l~~v~~~~YdaVf~pGGhG~m~Dl~~~~~l~~ll~~~~~~gk~vaaVCHGpaaLl~~ 143 (231)
T cd03147 82 KNIKKADEVNPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred HCCCCHHHCCHHHCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHC
T ss_conf 67689568898782599988988530324239999999999997599799980688997616
No 275
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=23.63 E-value=49 Score=13.45 Aligned_cols=50 Identities=16% Similarity=0.281 Sum_probs=28.3
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH---HHHHHHHCCCC
Q ss_conf 2453687406643012567799999998875148643330---36776530132
Q gi|254781038|r 79 SDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAIN---HLEGHILTARL 129 (363)
Q Consensus 79 ~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~Vn---H~~aH~~~~~l 129 (363)
.+.|+|-.+-|||.+.---.-....+.+ ...++|++||- -..+|.+-+.+
T Consensus 45 ~~~dgIILSpGPg~P~~~~~~~~~i~~~-~~~~iPILGIClG~Q~ia~~~Gg~v 97 (221)
T PRK07765 45 AGFDGVLLSPGPGTPERAGASIDMVRAC-AAAGTPLLGVCLGHQAIGVAFGATV 97 (221)
T ss_pred CCCCEEEECCCCCCHHHCCCCHHHHHHH-HCCCCCEEEEEHHHHHHHHHHCCEE
T ss_conf 4899899969999801167248899875-3259988987099999999839789
No 276
>pfam00108 Thiolase_N Thiolase, N-terminal domain. Thiolase is reported to be structurally related to beta-ketoacyl synthase (pfam00109), and also chalcone synthase.
Probab=23.58 E-value=49 Score=13.44 Aligned_cols=62 Identities=27% Similarity=0.262 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC----CCCCHHHHHHHH
Q ss_conf 996999999999983898224536874066430125677999999988751486----433303677653
Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKP----FYAINHLEGHIL 125 (363)
Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~P----li~VnH~~aH~~ 125 (363)
.+....+++++++++++..++||.|.+...---.. |.+.||..++..+.| -+-||-+-+--+
T Consensus 27 ~~L~~~~~~~~l~r~~~~p~~Id~vi~G~~~~~g~----~~n~aR~~~l~aGlp~~vp~~tvnr~C~Sgl 92 (264)
T pfam00108 27 VDLGAIAIKAALERAGVKPEDVDEVIMGNVLQAGE----GQNPARQAALKAGIPDSVPAVTINKVCGSGL 92 (264)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCC----CCHHHHHHHHHCCCCCCCCEEEEECHHHHHH
T ss_conf 99999999999998599968835688843665677----6629999999769998886689823201799
No 277
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=23.50 E-value=49 Score=13.43 Aligned_cols=24 Identities=17% Similarity=0.319 Sum_probs=10.5
Q ss_pred HHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 036776530132256799843999
Q gi|254781038|r 118 NHLEGHILTARLTDDIAFPYLVLL 141 (363)
Q Consensus 118 nH~~aH~~~~~l~~~~~~PfL~Ll 141 (363)
.|.-+.+...+-.+.+.+|.++|-
T Consensus 57 ~Hfa~el~~~f~~~R~~lpai~L~ 80 (196)
T PRK10886 57 QHFAASMINRFETERPSLPAIALN 80 (196)
T ss_pred HHHHHHHHCCCCCCCCCCEEEEEC
T ss_conf 999999964655689884056632
No 278
>PRK07851 acetyl-CoA acetyltransferase; Provisional
Probab=23.40 E-value=49 Score=13.42 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHC-CCCCCCCCEEEECC-CCCHHHHHHHHHHHHHHHHHHHCC---CCCCCHHHHHH
Q ss_conf 96999999999983-89822453687406-643012567799999998875148---64333036776
Q gi|254781038|r 61 DVLDILIKQTLLRA-NMQISDMDSIAVTA-GPGLMGGLIVGLMTAKAISYVSHK---PFYAINHLEGH 123 (363)
Q Consensus 61 ~~l~~li~~~l~~a-~~~~~~id~Iavt~-gPG~~~~L~vG~~~Ak~la~~~~~---Pli~VnH~~aH 123 (363)
+....+++++|++. +++..+||.+-+.. -|. =..|.+.||..++..++ |-+-||.+-+=
T Consensus 29 ~L~a~~i~~~l~r~~~l~p~~Id~Vi~G~~~~~----g~~g~n~aR~aaL~aGl~~vpa~TVnr~C~S 92 (405)
T PRK07851 29 DLAAQMVRAALDKVPALDPHDIDDLMLGCGLPG----GESGFNIARVVAVLLGYDFLPGTTVNRYCSS 92 (405)
T ss_pred HHHHHHHHHHHHHCCCCCHHHCCEEEEECCCCC----CCCCCCHHHHHHHHCCCCCCCEEEECCCCCH
T ss_conf 999999999998667979899898999837754----6432309999999739999863457560205
No 279
>CHL00101 trpG anthranilate synthase component 2
Probab=23.39 E-value=49 Score=13.42 Aligned_cols=85 Identities=13% Similarity=0.196 Sum_probs=43.3
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHCCCCCCC--CCC-----------C-C----E
Q ss_conf 45368740664301256779999999887514864333---036776530132256--799-----------8-4----3
Q gi|254781038|r 80 DMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAI---NHLEGHILTARLTDD--IAF-----------P-Y----L 138 (363)
Q Consensus 80 ~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~V---nH~~aH~~~~~l~~~--~~~-----------P-f----L 138 (363)
+.|+|-.+-|||...-...-....+.+ ..++|++|| |-+-|+.+-+.+... .++ + | -
T Consensus 43 ~p~gIILS~GPg~p~~~~~~~~~~~~~--~~~iPILGIClG~Q~ia~~~Gg~v~~~~~~~~G~~~~i~~~~~~lf~g~~~ 120 (190)
T CHL00101 43 NPRHIIISPGPGHPRDSGISLDVISSY--APTIPILGVCLGHQSIGYVYGGKIIKASKPMHGKTSLIYHNHDDLFQGLPN 120 (190)
T ss_pred CCCEEEECCCCCCHHHCCCCHHHHHHH--HCCCCEEEECHHHHHHHHHCCCEEEECCCEEECCEEEEEECCCCCCCCCCC
T ss_conf 979899979999957857616899997--149987897398899988758649978820436247999789875437998
Q ss_pred EEEEECCCEEEEEECCC-CCCEECCCCCC
Q ss_conf 99970687479998375-64300022336
Q gi|254781038|r 139 VLLVSGGHTQILLVRDV-AHYDRLGTTID 166 (363)
Q Consensus 139 ~LlvSGGhT~l~~~~~~-~~~~ilg~T~D 166 (363)
...++-.|+..+...+. ..+++++.|-|
T Consensus 121 ~~~~~~~hs~~v~~~~lp~~~~v~a~s~~ 149 (190)
T CHL00101 121 PFIATRYHSLIIDRENLPSCLEITAWTED 149 (190)
T ss_pred CCEEEECCEEEEEECCCCCCEEEEEECCC
T ss_conf 84898707799980457898799999799
No 280
>pfam09839 DUF2066 Uncharacterized protein conserved in bacteria (DUF2066). This domain, found in various prokaryotic proteins, has no known function.
Probab=23.10 E-value=50 Score=13.38 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=21.0
Q ss_pred CCCCCCEECCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 37564300022336300238888988528876
Q gi|254781038|r 153 RDVAHYDRLGTTIDDALGECFDKIAKSLGLPY 184 (363)
Q Consensus 153 ~~~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~y 184 (363)
++...-+++++--+..+-+.+.+.|+.-|||.
T Consensus 110 ~~~~~R~l~~~~~~~~~~~~l~~~A~~RGlPl 141 (234)
T pfam09839 110 EDGGGRRLLGDGSNSDLAAALRDAAQQRGLPL 141 (234)
T ss_pred ECCCCCEECCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 06987545168877689999999999769855
No 281
>PRK01022 hypothetical protein; Provisional
Probab=23.01 E-value=19 Score=16.29 Aligned_cols=10 Identities=10% Similarity=-0.104 Sum_probs=3.3
Q ss_pred HHHHHHHHHH
Q ss_conf 3345879999
Q gi|254781038|r 281 GGVASNHFIR 290 (363)
Q Consensus 281 GGVaaN~~LR 290 (363)
+++....-++
T Consensus 72 ~~~~d~~~~~ 81 (168)
T PRK01022 72 DFEIDEEEIK 81 (168)
T ss_pred CCCCCHHHHH
T ss_conf 6667999999
No 282
>cd01702 Pol_eta Pol eta is member of the DNA polimerase Y-family. Unlike other Y-family members, Pol eta can efficiently and accurately replicate DNA past UV-induced cis-syn cyclobutane thymine-thumine (T-T) lesions. It synthesizes AA opposite a TT dimer. Pol eta is able to replicate through a variety of other distorting DNA lesion as well.
Probab=22.98 E-value=50 Score=13.36 Aligned_cols=17 Identities=12% Similarity=0.087 Sum_probs=9.4
Q ss_pred CHHHHHHHHHHHHHHCC
Q ss_conf 25899999999999849
Q gi|254781038|r 314 DNAVMIAWAALERMEAG 330 (363)
Q Consensus 314 DNAaMIA~ag~~~~~~g 330 (363)
||.-=|-.++.+.++.-
T Consensus 321 ~d~~~i~~~A~~ll~~i 337 (358)
T cd01702 321 DDLEKLVKDAFKLLKQL 337 (358)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 99999999999999999
No 283
>PRK07625 consensus
Probab=22.86 E-value=51 Score=13.35 Aligned_cols=125 Identities=20% Similarity=0.240 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCC-CCCCEEEEEECCCEEEEEECCCCCCEECCCCCCCC
Q ss_conf 43012567799999998875148643330367765301322567-99843999706874799983756430002233630
Q gi|254781038|r 90 PGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDI-AFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDA 168 (363)
Q Consensus 90 PG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~-~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda 168 (363)
|-++.-|+.-+...|-+-.++|+|.+.+.--||-=..+-+.... .--+=++.|||---.+=++.+. ..++ |-.
T Consensus 81 ~~~PedL~~Qip~i~e~l~a~gIp~~e~~GyEADDiIgTla~~a~~~g~~v~IvSgDKDl~QLV~~~--v~i~----~~~ 154 (922)
T PRK07625 81 PPMPPDLALQIEPIHEAVRALGWPLLMIEGVEADDVIGTLARQAEQHGMNVIVSTGDKDLAQLVTDR--VTLV----NTM 154 (922)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHCCCC--EEEE----ECC
T ss_conf 9998889998999999999879988452891589999999999997889399981898686618998--6999----788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 023888898852887610355666554057333458611106887542210245899999985
Q gi|254781038|r 169 LGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICA 231 (363)
Q Consensus 169 ~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~ 231 (363)
-|+.+|.-+..=-++.+--+.+|-+|..||...- +|=+.+ . |-|||+ +++++
T Consensus 155 k~~~~d~~~V~ek~GV~P~qviD~lAL~GDsSDN---IPGVpG--I-----G~KTA~-kLL~e 206 (922)
T PRK07625 155 TNEVLDRDGVLAKFGVPPERIVDYLSLIGDTVDN---VPGVEK--C-----GPKTAV-KWLTQ 206 (922)
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCC---CCCCCC--C-----CHHHHH-HHHHH
T ss_conf 9927089999998797989999999971976357---899998--5-----679899-99997
No 284
>COG0830 UreF Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]
Probab=22.85 E-value=41 Score=13.97 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=8.2
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q ss_conf 0688999999999999999
Q gi|254781038|r 239 DIADICASFQVTVVRILQA 257 (363)
Q Consensus 239 ~~~diaasfQ~~i~~~L~~ 257 (363)
+..+.+..|+.+.+..++.
T Consensus 148 ~~~~al~a~lya~~~~lv~ 166 (229)
T COG0830 148 DLEDALLAFLYAWASNLVS 166 (229)
T ss_pred CHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 285
>pfam02698 DUF218 DUF218 domain. This large family of proteins contains several highly conserved charged amino acids, suggesting this may be an enzymatic domain (Bateman A pers. obs). The family includes SanA, which is involved in Vancomycin resistance. This protein may be involved in murein synthesis.
Probab=22.63 E-value=51 Score=13.32 Aligned_cols=37 Identities=27% Similarity=0.236 Sum_probs=16.2
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCC
Q ss_conf 55236541334587999999999998689889962878877
Q gi|254781038|r 273 KQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCT 313 (363)
Q Consensus 273 ~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ct 313 (363)
+.+.+++ |.+.--++... ...++.+.+....+..+.+
T Consensus 90 ~~~~v~l---VTs~~H~~Ra~-~~f~~~~~~~~~~~~~~~~ 126 (148)
T pfam02698 90 GLRRVLL---VTSAFHMRRAL-LLFRRAGPEVVPVPADYPT 126 (148)
T ss_pred CCCEEEE---ECCHHHHHHHH-HHHHHHCCEEEEEECCCCC
T ss_conf 9975999---89888999999-9999809905998679888
No 286
>TIGR00338 serB phosphoserine phosphatase SerB; InterPro: IPR004469 Phosphoserine phosphatase (SerB), (3.1.3.3 from EC), also known as O-phosphoserine phosphohydrolase, is involved in both serine and glycine biosynthesis. It catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate, which is the last step in the biosynthesis of serine from carbohydrates. The reaction proceeds via the formation of a phosphoryl-enzyme intermediate. It acts as a homodimer, and requires magnesium as a cofactor.; GO: 0004647 phosphoserine phosphatase activity, 0006564 L-serine biosynthetic process.
Probab=22.57 E-value=51 Score=13.31 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=15.0
Q ss_pred CCCCCEEEEEHHHH-HHHHHHHHHH
Q ss_conf 44552365413345-8799999999
Q gi|254781038|r 271 PHKQAVLVVSGGVA-SNHFIRASLI 294 (363)
Q Consensus 271 ~~~~~~lvv~GGVa-aN~~LR~~l~ 294 (363)
+.+.+..|+|||-. .=.++|++|.
T Consensus 100 ~~gykVav~SGGF~~~a~~~k~~L~ 124 (223)
T TIGR00338 100 EKGYKVAVISGGFDLFAEHLKDKLG 124 (223)
T ss_pred HCCEEEEEEECCHHHHHHHHHHHHC
T ss_conf 8690799985776888988899857
No 287
>PTZ00004 actin; Provisional
Probab=22.44 E-value=52 Score=13.29 Aligned_cols=50 Identities=24% Similarity=0.298 Sum_probs=34.0
Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHHC-----CCEEEECCHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 523654133458799999999999868-----98899628788772589999999999984
Q gi|254781038|r 274 QAVLVVSGGVASNHFIRASLIDLCVLH-----GFRFVAPPARLCTDNAVMIAWAALERMEA 329 (363)
Q Consensus 274 ~~~lvv~GGVaaN~~LR~~l~~~~~~~-----~~~~~~P~~~~ctDNAaMIA~ag~~~~~~ 329 (363)
.+.++++||.+.=.-+.++|++.+... .++++.|+-+ ..-+|.|--.+-.
T Consensus 294 ~~nIvl~GG~S~~~G~~~RL~~EL~~~~p~~~~v~v~~~~~r------~~~aW~GgSilas 348 (375)
T PTZ00004 294 YGNIVLSGGTTMFEGIGERLTKEISNLAPSSIKIKVVAPPER------KYSVWIGGSILSS 348 (375)
T ss_pred HCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCC------CCCCHHHHHHHHC
T ss_conf 648899654246636899999999976889834899748988------8315375899877
No 288
>pfam00022 Actin Actin.
Probab=22.39 E-value=52 Score=13.28 Aligned_cols=51 Identities=22% Similarity=0.263 Sum_probs=33.5
Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHHC-----CCEEEECCHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 523654133458799999999999868-----98899628788772589999999999984
Q gi|254781038|r 274 QAVLVVSGGVASNHFIRASLIDLCVLH-----GFRFVAPPARLCTDNAVMIAWAALERMEA 329 (363)
Q Consensus 274 ~~~lvv~GGVaaN~~LR~~l~~~~~~~-----~~~~~~P~~~~ctDNAaMIA~ag~~~~~~ 329 (363)
...++++||.+.=.-+.++|++...+. .++++.||- +.-.-+|.|--.+-.
T Consensus 287 ~~nIvl~GG~S~~~Gf~~RL~~el~~~~~~~~~~~v~~~~~-----~r~~~aW~GgSilas 342 (369)
T pfam00022 287 LANIVVTGGTTLFPGFTERLEKELAQLAPSGVKVKIIAPPN-----ERKYSAWIGGSILAS 342 (369)
T ss_pred HHCEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCC-----CCCEEEEHHHHHHHC
T ss_conf 82706845646785789999999996688996179986999-----865477540567336
No 289
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=22.27 E-value=52 Score=13.27 Aligned_cols=48 Identities=8% Similarity=0.276 Sum_probs=28.3
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHCCCC
Q ss_conf 45368740664301256779999999887514864333---036776530132
Q gi|254781038|r 80 DMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAI---NHLEGHILTARL 129 (363)
Q Consensus 80 ~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~V---nH~~aH~~~~~l 129 (363)
+.++|-.+-|||...--.......+. +..++|++|| +.+-++.+-+.+
T Consensus 43 ~p~~IilS~GPg~p~~~~~~~~~~~~--~~~~iPILGIClG~Q~ia~~~Gg~v 93 (192)
T PRK08857 43 NPSHLVISPGPCTPNEAGISLQAIEH--FAGKLPILGVCLGHQAIAQVFGGDV 93 (192)
T ss_pred CCCEEEECCCCCCHHHCCCCHHHHHH--HCCCCCEEEECHHHHHHHHHHCCEE
T ss_conf 97959998999996782861466997--3579998998799999999839829
No 290
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=22.10 E-value=39 Score=14.12 Aligned_cols=17 Identities=18% Similarity=0.042 Sum_probs=7.7
Q ss_pred HCCCCCCCCCEEEECCC
Q ss_conf 83898224536874066
Q gi|254781038|r 73 RANMQISDMDSIAVTAG 89 (363)
Q Consensus 73 ~a~~~~~~id~Iavt~g 89 (363)
|..+.+.--..+-+|.|
T Consensus 74 e~~lpl~~~~~~y~t~~ 90 (425)
T COG5153 74 EDMLPLLLQTPIYGTYG 90 (425)
T ss_pred CCCCHHHHCCCEEEECC
T ss_conf 10020332476045413
No 291
>KOG4540 consensus
Probab=22.10 E-value=39 Score=14.12 Aligned_cols=17 Identities=18% Similarity=0.042 Sum_probs=7.7
Q ss_pred HCCCCCCCCCEEEECCC
Q ss_conf 83898224536874066
Q gi|254781038|r 73 RANMQISDMDSIAVTAG 89 (363)
Q Consensus 73 ~a~~~~~~id~Iavt~g 89 (363)
|..+.+.--..+-+|.|
T Consensus 74 e~~lpl~~~~~~y~t~~ 90 (425)
T KOG4540 74 EDMLPLLLQTPIYGTYG 90 (425)
T ss_pred CCCCHHHHCCCEEEECC
T ss_conf 10020332476045413
No 292
>TIGR01715 phage_lam_T phage tail assembly protein T; InterPro: IPR009350 This family represents the minor tail protein T of Lambda-like viruses and their prophage. The minor tail protein T is located at the distal end and is involved in the assembly of the initiator complex for tail polymerisation. The protein is essential for tail assembly but is not found in the mature virion ..
Probab=21.99 E-value=33 Score=14.60 Aligned_cols=21 Identities=33% Similarity=0.312 Sum_probs=16.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHC
Q ss_conf 754221024589999998511
Q gi|254781038|r 213 LCDFSFSGLKTSVQKTICAFD 233 (363)
Q Consensus 213 ~~dFSFSGLkTav~~~i~~~~ 233 (363)
-+|-.|||||.+|.-++-..+
T Consensus 45 lLDa~FStL~~~v~~L~~~D~ 65 (111)
T TIGR01715 45 LLDAEFSTLKYAVSSLVFGDP 65 (111)
T ss_pred HHHHHHHHHHHHHHHHHCCCC
T ss_conf 788888889999987630688
No 293
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=21.97 E-value=53 Score=13.23 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=28.8
Q ss_pred EHHHHHHHHHHHHHHHHHHHCCCEEEECCHH-HCCCHHHH
Q ss_conf 1334587999999999998689889962878-87725899
Q gi|254781038|r 280 SGGVASNHFIRASLIDLCVLHGFRFVAPPAR-LCTDNAVM 318 (363)
Q Consensus 280 ~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~-~ctDNAaM 318 (363)
.+|.. |..||+.|.+.++++|+++.+--.. +-||-++.
T Consensus 263 ~~~~~-~~~l~~~L~~~A~~~~Ip~Q~~v~~~ggTDA~a~ 301 (355)
T COG1363 263 ASGIY-HPKLRKFLLELAEKNNIPYQVDVSPGGGTDAGAA 301 (355)
T ss_pred CCCCC-CHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf 99888-9899999999999859976999457887538999
No 294
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=21.89 E-value=22 Score=15.82 Aligned_cols=42 Identities=12% Similarity=0.074 Sum_probs=25.6
Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHHCCC--EEEECCHHHCCCH
Q ss_conf 52365413345879999999999986898--8996287887725
Q gi|254781038|r 274 QAVLVVSGGVASNHFIRASLIDLCVLHGF--RFVAPPARLCTDN 315 (363)
Q Consensus 274 ~~~lvv~GGVaaN~~LR~~l~~~~~~~~~--~~~~P~~~~ctDN 315 (363)
.+.+.++=|+++-.+++..++.+-+..|+ +++.-+-+|=+-|
T Consensus 319 ~~~~~~vtG~l~~~~~~~~~~~l~~~~~l~i~v~~I~N~fFG~~ 362 (433)
T TIGR03279 319 ARRLSWVVGNAVEQAFEPLVERLNAVEGLELDLHGLASDYWGQE 362 (433)
T ss_pred CCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC
T ss_conf 84799998051799999999985166895799999356888998
No 295
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=21.46 E-value=54 Score=13.16 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECC-CCCHHHHHHHHHHHHHHHHHH--HCCCCCCC
Q ss_conf 99699999999998389822453687406-643012567799999998875--14864333
Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMDSIAVTA-GPGLMGGLIVGLMTAKAISYV--SHKPFYAI 117 (363)
Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id~Iavt~-gPG~~~~L~vG~~~Ak~la~~--~~~Pli~V 117 (363)
.+.+...++++.+..+ +.+|-+-. .||- ........+..|-.. .++|++..
T Consensus 19 ~~~i~~~l~~A~~d~~-----vk~ivL~idSpGG--~~~~s~ei~~~i~~~k~~~KpV~a~ 72 (208)
T cd07023 19 ADSLIEQLRKAREDDS-----VKAVVLRINSPGG--SVVASEEIYREIRRLRKAKKPVVAS 72 (208)
T ss_pred HHHHHHHHHHHHHCCC-----CCEEEEEEECCCC--CHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999999999950899-----7489999748996--2999999999999875149859999
No 296
>pfam04493 Endonuclease_5 Endonuclease V. Endonuclease V is specific for single-stranded DNA or for duplex DNA that contains uracil or that is damaged by a variety of agents.
Probab=21.39 E-value=54 Score=13.15 Aligned_cols=99 Identities=19% Similarity=0.204 Sum_probs=48.8
Q ss_pred CCEEEEEECCCH--HH-EEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 846887502602--20-778873388884189887311334621218714559999999969999999999838982245
Q gi|254781038|r 5 KKTVIGIETSCD--ET-AVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDM 81 (363)
Q Consensus 5 ~~~ILgIETScd--~t-svaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~i 81 (363)
-++|=|+|-|.+ +. .+|+|-.+-.+.+++...... .+....| +|-.=++.-...+..++ ++-.. +.
T Consensus 21 l~~VaGvDvSf~~~~~~~aa~Vvl~~p~l~~v~~~~~~-~~~~fPY---IPG~LaFRE~p~~l~a~----~~L~~---~P 89 (205)
T pfam04493 21 LRYVAGVDVSYDKETRAVAALVVLDFPSLEVIEKKVIR-GEISFPY---IPGFLAFRELPLLLKAL----KKLYD---EP 89 (205)
T ss_pred EEEEEEEEEEEECCCEEEEEEEEEECCCCCEEEEEEEE-EEECCCC---CCCHHHHHHHHHHHHHH----HHCCC---CC
T ss_conf 56999999737579849999999988998399999999-7623665---54034331018999999----96577---99
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 368740664301256779999999887514864333
Q gi|254781038|r 82 DSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAI 117 (363)
Q Consensus 82 d~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~V 117 (363)
|.+-| .|=|..-.= +...|--+...+++|-|||
T Consensus 90 Dvllv-DG~Gi~HPR--~~GlAsHlGV~l~~PTIGV 122 (205)
T pfam04493 90 DVLLV-DGNGIAHPR--RFGLATHAGVLLDKPTIGV 122 (205)
T ss_pred CEEEE-CCCCCCCCC--CCCHHEEEEEECCCCCCCC
T ss_conf 99998-787643762--4260103566528783230
No 297
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=21.34 E-value=54 Score=13.14 Aligned_cols=168 Identities=14% Similarity=0.150 Sum_probs=79.9
Q ss_pred CEEEEEECCCEEEEEECC-CCCCEECCCCCCCCH-HHHHHHHH-HHC---------CCCCCH-HHHHHHHHHHCCCCCC-
Q ss_conf 439997068747999837-564300022336300-23888898-852---------887610-3556665540573334-
Q gi|254781038|r 137 YLVLLVSGGHTQILLVRD-VAHYDRLGTTIDDAL-GECFDKIA-KSL---------GLPYPG-GVEIEKAALMGDGKRF- 202 (363)
Q Consensus 137 fL~LlvSGGhT~l~~~~~-~~~~~ilg~T~Dda~-Ge~~DK~a-r~L---------gl~yPg-Gp~ie~~A~~g~~~~~- 202 (363)
+|.+=+-||++++-+++- .+.++++++.-|... |+-||..= ..+ |..... -..+.++......-+.
T Consensus 196 vlV~DlGgGTfDVSvl~~~~g~~~Vlat~gD~~LGG~dfD~~L~~~~~~~fk~k~~g~d~~~~~ra~~rL~~aaEkaK~~ 275 (657)
T PTZ00009 196 VLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVEDFKRKNKGKDLSSNHRALRRLRTACERAKRT 275 (657)
T ss_pred EEEEECCCCEEEEEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99998788649977689868838998504778868067799999999999987516878664999999999999999997
Q ss_pred -------CCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf -------5861110688754221024589999998511201210688999999999999999999999998762144552
Q gi|254781038|r 203 -------KFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQA 275 (363)
Q Consensus 203 -------~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~ 275 (363)
.+.++... .+.||+.+ ....+-..+|..+-+. +...+++++.... .....+.
T Consensus 276 LS~~~~a~i~ie~l~-~~~d~~~~---------------itR~~FE~l~~~l~~r----~~~~i~~aL~~a~-l~~~dId 334 (657)
T PTZ00009 276 LSSSTQATIEIDSLF-EGIDYQAT---------------ISRARFEELCGDLFRS----TLQPVEKVLQDAK-MDKRSVH 334 (657)
T ss_pred HCCCCCEEEEECCCC-CCCCCEEE---------------EHHHHHHHHHHHHHHH----HHHHHHHHHHHHC-CCHHHEE
T ss_conf 145874378821432-34463356---------------7199999999999998----9999999999737-9952514
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 3654133458799999999999868988996287887725899999999999849
Q gi|254781038|r 276 VLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAWAALERMEAG 330 (363)
Q Consensus 276 ~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ag~~~~~~g 330 (363)
.++++||=+.=..+|+.++++...+. |...+-.|-|+=.+.|=.-....|
T Consensus 335 ~ViLVGGsTRiP~Vq~~l~~~f~gk~-----~~~~iNpDEaVA~GAAiqaa~Lsg 384 (657)
T PTZ00009 335 DVVLVGGSTRIPKVQSLISDFFNGKE-----LNKSINPDEAVAYGAAVQAAILTG 384 (657)
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCCC-----CCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99980881467689999999818988-----888978314666548999998718
No 298
>PRK08768 consensus
Probab=21.18 E-value=55 Score=13.12 Aligned_cols=22 Identities=9% Similarity=-0.074 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9699999999998389822453
Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMD 82 (363)
Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id 82 (363)
+.......++++.+++...+++
T Consensus 75 ~~~l~aa~~Al~dAGl~~~~~~ 96 (411)
T PRK08768 75 HYGVGASFMALDDSGLEINESN 96 (411)
T ss_pred HHHHHHHHHHHHHHCCCHHHCC
T ss_conf 9999999999774189900147
No 299
>pfam02741 FTR_C FTR, proximal lobe. The FTR (Formylmethanofuran--tetrahydromethanopterin formyltransferase) enzyme EC:2.3.1.101 is involved in archaebacteria in the formation of methane from carbon dioxide. C-terminal proximal lobe of alpha+beta ferredoxin-like fold. SCOP reports fold duplication with N-terminal distal lobe.
Probab=21.09 E-value=49 Score=13.42 Aligned_cols=54 Identities=24% Similarity=0.490 Sum_probs=27.9
Q ss_pred CCCEECCCCCCCCHHH---HHHHHHHHCC--CCCCHHHHHHHHHHHCCCCCCCCCCHHCCCC
Q ss_conf 6430002233630023---8888988528--8761035566655405733345861110688
Q gi|254781038|r 156 AHYDRLGTTIDDALGE---CFDKIAKSLG--LPYPGGVEIEKAALMGDGKRFKFPCPLVQGT 212 (363)
Q Consensus 156 ~~~~ilg~T~Dda~Ge---~~DK~ar~Lg--l~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~ 212 (363)
+++-++++|.+.+.-- |.|...+.=| +|||||- +-.-.+-| .+|++-.+-.+..
T Consensus 19 GNflil~~~~~~aL~Aae~AV~Ai~~v~gvI~PFPGGi-vrSGSKvG--SkYk~l~ASTN~a 77 (150)
T pfam02741 19 GNFLILAEDQMAALAAAEAAVDAIREVPGVITPFPGGI-VRSGSKVG--SKYKFLGASTNDA 77 (150)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCCCCE-ECCCCCCC--CCCCCCCCCCCCC
T ss_conf 03899978989999999999999971898575389970-15577565--5557675765656
No 300
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=21.04 E-value=27 Score=15.20 Aligned_cols=90 Identities=20% Similarity=0.108 Sum_probs=37.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHH--HHHHHHH
Q ss_conf 87542210245899999985112012106889999999999999999999999987621445523654133--4587999
Q gi|254781038|r 212 TLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGG--VASNHFI 289 (363)
Q Consensus 212 ~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GG--VaaN~~L 289 (363)
.+++.-..|+.+....+++..- +++..-++-|--..-...+...+...++ +. ... ...++.|| +-.++-.
T Consensus 26 ~GfeVi~lG~~~~~e~~~~~a~---e~~ad~i~vSsl~g~~~~~~~~l~~~L~---e~-G~~-di~vvvGG~i~i~~~d~ 97 (128)
T cd02072 26 AGFNVVNLGVLSPQEEFIDAAI---ETDADAILVSSLYGHGEIDCKGLREKCD---EA-GLK-DILLYVGGNLVVGKQDF 97 (128)
T ss_pred CCCEEEECCCCCCHHHHHHHHH---HCCCCEEEECCCCCCCCHHHHHHHHHHH---HC-CCC-CCEEEECCCCCCCCCCH
T ss_conf 8972984798899999999998---7399999982320256248999999999---67-999-99899789867783104
Q ss_pred HHHHHHHHHHCCCEEEECCHH
Q ss_conf 999999998689889962878
Q gi|254781038|r 290 RASLIDLCVLHGFRFVAPPAR 310 (363)
Q Consensus 290 R~~l~~~~~~~~~~~~~P~~~ 310 (363)
+.+++..++.|+.-+|+|-.
T Consensus 98 -~~~~~~l~~~Gv~~vF~pGt 117 (128)
T cd02072 98 -EDVEKRFKEMGFDRVFAPGT 117 (128)
T ss_pred -HHHHHHHHHCCCCEEECCCC
T ss_conf -89999999669685749987
No 301
>PRK13566 anthranilate synthase; Provisional
Probab=20.91 E-value=55 Score=13.08 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=10.9
Q ss_pred CCCCHHHHHHHHHHHC
Q ss_conf 3630023888898852
Q gi|254781038|r 165 IDDALGECFDKIAKSL 180 (363)
Q Consensus 165 ~Dda~Ge~~DK~ar~L 180 (363)
-|...||.-.+|.|.-
T Consensus 236 ~d~~p~ey~~~V~kak 251 (724)
T PRK13566 236 ADHAPGEYAALVEKAK 251 (724)
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 7899799999999999
No 302
>PRK08170 acetyl-CoA acetyltransferase; Provisional
Probab=20.73 E-value=56 Score=13.06 Aligned_cols=62 Identities=11% Similarity=0.076 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCC-CCHHHHHHHHHHHHHHHHHHHC----CCCCCCHHHHHHHHC
Q ss_conf 996999999999983898224536874066-4301256779999999887514----864333036776530
Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMDSIAVTAG-PGLMGGLIVGLMTAKAISYVSH----KPFYAINHLEGHILT 126 (363)
Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id~Iavt~g-PG~~~~L~vG~~~Ak~la~~~~----~Pli~VnH~~aH~~~ 126 (363)
.+.....+++++++++++.++||.|-+..- |+. -|.+.||..++..+ +|.+-||.+-+==+.
T Consensus 28 ~~L~a~~i~~~l~r~~i~p~~Id~Vi~G~v~~~~-----~~~n~AR~aaL~aGlp~~vp~~TVnr~C~SGl~ 94 (426)
T PRK08170 28 SDLAVQAGRALLNRQPFAPDDLDEVILGCAMPSP-----DEANIGRVAALRLGCGEDVPGWTVQRNCASGMQ 94 (426)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCC-----CCCCHHHHHHHHCCCCCCCCEEEECCCCHHHHH
T ss_conf 9999999999999749998999989999336256-----667799999997699988872677661237999
No 303
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.68 E-value=56 Score=13.05 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCE-EEECCHHHCCCHHH
Q ss_conf 99999999999999999876214-45523654133458799999999999868988-99628788772589
Q gi|254781038|r 249 VTVVRILQARLKQGFLLFRKAFP-HKQAVLVVSGGVASNHFIRASLIDLCVLHGFR-FVAPPARLCTDNAV 317 (363)
Q Consensus 249 ~~i~~~L~~k~~~a~~~~~~~~~-~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~-~~~P~~~~ctDNAa 317 (363)
.-..+.|+..+.|.+++|..... ..++.++++||=|.=.-|-..+.+. -+++ .+.-|..+-+||+.
T Consensus 262 ~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qr---l~~~t~vanPf~~~~~~~~ 329 (354)
T COG4972 262 RPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQR---LSIPTEVANPFAYMALNVK 329 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHH---HCCCEEEECHHHHHHHHHC
T ss_conf 8889999999999999987435651454799846961066399999987---3898076277898765212
No 304
>PRK09961 exoaminopeptidase; Provisional
Probab=20.40 E-value=57 Score=13.01 Aligned_cols=41 Identities=12% Similarity=0.002 Sum_probs=30.4
Q ss_pred EEHHHHHHHHHHHHHHHHHHHCCCEEEE-CCHHHCCCHHHHH
Q ss_conf 4133458799999999999868988996-2878877258999
Q gi|254781038|r 279 VSGGVASNHFIRASLIDLCVLHGFRFVA-PPARLCTDNAVMI 319 (363)
Q Consensus 279 v~GGVaaN~~LR~~l~~~~~~~~~~~~~-P~~~~ctDNAaMI 319 (363)
.-.|...|..|++++.+.+++.++++-. .....-||-+++.
T Consensus 248 ~d~~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~~ggTDa~~~~ 289 (345)
T PRK09961 248 SDKSLIAPPKLTAWIETVAAEIGVPLQADMFSNGGTDGGAVH 289 (345)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
T ss_conf 898877898999999999998699869984689874799999
No 305
>PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed
Probab=20.36 E-value=57 Score=13.01 Aligned_cols=74 Identities=9% Similarity=0.091 Sum_probs=47.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC----CCCCH
Q ss_conf 62121871455999999996999999999983898224536874066430125677999999988751486----43330
Q gi|254781038|r 43 QHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKP----FYAIN 118 (363)
Q Consensus 43 ~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~P----li~Vn 118 (363)
..+++||-. +...=.+....++++++++++++.++||.|.+..-=... -|-+.||..++.-+.| -+-||
T Consensus 24 P~gk~~G~l---~~~~~~~L~a~~ik~~l~r~~i~p~~Id~Vi~G~v~~~~----~g~n~AR~aaL~aGlp~~vp~~TVn 96 (436)
T PRK08963 24 PFAKQATAF---HGVPAVDLGKMVVGELLARSEIDPKLIEQLVFGQVVQMP----EAPNIAREIVLGTGMNVHTDAYSVS 96 (436)
T ss_pred CCCCCCCCC---CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCC----CCCHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 544689885---889989999999999999829898999989998367567----6772999999975999888626776
Q ss_pred HHHHH
Q ss_conf 36776
Q gi|254781038|r 119 HLEGH 123 (363)
Q Consensus 119 H~~aH 123 (363)
.+-+-
T Consensus 97 r~C~S 101 (436)
T PRK08963 97 RACAT 101 (436)
T ss_pred CHHHH
T ss_conf 32235
No 306
>TIGR01198 pgl 6-phosphogluconolactonase; InterPro: IPR005900 6-phosphogluconolactonase (3.1.1.31 from EC) is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. 6-phospho-D-glucono-1,5-lactone + H2O = 6-phospho-D-gluconate. ; GO: 0017057 6-phosphogluconolactonase activity, 0006098 pentose-phosphate shunt.
Probab=20.32 E-value=57 Score=13.00 Aligned_cols=77 Identities=16% Similarity=0.092 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHH----HCCCEEEECCHHH-CCCHHHHHHHH
Q ss_conf 999999999999999999876214455236541334587999999999998----6898899628788-77258999999
Q gi|254781038|r 248 QVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCV----LHGFRFVAPPARL-CTDNAVMIAWA 322 (363)
Q Consensus 248 Q~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~----~~~~~~~~P~~~~-ctDNAaMIA~a 322 (363)
-+.+.+.+..|+..|+..- +.-.|++|||=+-+..+++.-.+... =..+.+++.+-+| -+|-+-=..-.
T Consensus 9 ~~~l~~~~~~~~~~Al~~~------~~~~~alSGGr~p~~L~~~La~~~~~~~~~W~~~~~~l~DER~VP~~h~dSN~~~ 82 (251)
T TIGR01198 9 AEALAERIATKLQKALAER------GQFLLALSGGRSPIALLEALAAQEAGSKLDWSRIHLFLGDERYVPLDHADSNTGL 82 (251)
T ss_pred HHHHHHHHHHHHHHHHHHH------CCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCHHHHHH
T ss_conf 9999999999999999976------8968998248745789999778634365880215788632321479880466899
Q ss_pred HHHHHHCC
Q ss_conf 99999849
Q gi|254781038|r 323 ALERMEAG 330 (363)
Q Consensus 323 g~~~~~~g 330 (363)
.-..+..+
T Consensus 83 ~r~~LL~~ 90 (251)
T TIGR01198 83 AREALLDR 90 (251)
T ss_pred HHHHHHCC
T ss_conf 99997403
No 307
>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=20.17 E-value=57 Score=12.98 Aligned_cols=30 Identities=13% Similarity=0.066 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHCCCCC-CCCC--EEEECCCCCH
Q ss_conf 9999999999838982-2453--6874066430
Q gi|254781038|r 63 LDILIKQTLLRANMQI-SDMD--SIAVTAGPGL 92 (363)
Q Consensus 63 l~~li~~~l~~a~~~~-~~id--~Iavt~gPG~ 92 (363)
-....+++|+.+++.. ..++ -+.|-.|-+.
T Consensus 8 a~~AA~eAl~dAGl~~~~~~~~~r~GV~~Gs~~ 40 (336)
T PRK09116 8 ATRASELALADAGLLGDPILTDGRMGVAYGSST 40 (336)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECC
T ss_conf 999999999965999986678888899999574
No 308
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=20.07 E-value=57 Score=12.97 Aligned_cols=166 Identities=19% Similarity=0.215 Sum_probs=80.1
Q ss_pred CCEEEEEECCCEEEEEECC-CCCCEECCCCCCCCH-HHHHHHHHH-----HCCCCCCHHHH-HHH---HHHHC-----CC
Q ss_conf 8439997068747999837-564300022336300-238888988-----52887610355-666---55405-----73
Q gi|254781038|r 136 PYLVLLVSGGHTQILLVRD-VAHYDRLGTTIDDAL-GECFDKIAK-----SLGLPYPGGVE-IEK---AALMG-----DG 199 (363)
Q Consensus 136 PfL~LlvSGGhT~l~~~~~-~~~~~ilg~T~Dda~-Ge~~DK~ar-----~Lgl~yPgGp~-ie~---~A~~g-----~~ 199 (363)
-+|+.=+-||+..+-+++- .+.|+++++.-|... |+-||..=. ..++....-+. ..+ .|+.. ..
T Consensus 203 ~vlVyDLGGGTfDVSIl~~~~gvfeVlAt~GD~~LGG~DfD~~i~~~l~~~~~~~~~~d~~~~~~L~~~aE~aK~~LS~~ 282 (621)
T PRK05183 203 VIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWLLEQAGLAPRLDPEDQRLLLDAARAAKEALSDA 282 (621)
T ss_pred EEEEEECCCCEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 79999878865899999974887899970598875808899999999998743365799999999999999999963678
Q ss_pred CCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 33458611106887542210245899999985112012106889999999999999999999999987621445523654
Q gi|254781038|r 200 KRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVV 279 (363)
Q Consensus 200 ~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv 279 (363)
....+..+. .+.+|+++ ........+|..+-+- ...-+++++.... .....+..+++
T Consensus 283 ~~~~i~~~~---~~~~~~~~---------------ltR~~FE~l~~~L~~r----t~~~v~~aL~dA~-l~~~dId~ViL 339 (621)
T PRK05183 283 DSVEVSVAL---WQGELKLT---------------ITREQFEALIAPLVKR----TLLACRRALRDAG-VEADEVLEVVM 339 (621)
T ss_pred CEEEEEEEC---CCCEEEEE---------------EEHHHHHHHHHHHHHH----HHHHHHHHHHHHC-CCHHHCEEEEE
T ss_conf 638999605---89537999---------------7499999999999999----9999999998713-68300209999
Q ss_pred EHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 133458799999999999868988996287887725899999999999849
Q gi|254781038|r 280 SGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAWAALERMEAG 330 (363)
Q Consensus 280 ~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ag~~~~~~g 330 (363)
+||-.-=..+|+.++++..+. |-....-|-++=.+.|=.-....|
T Consensus 340 VGGSTRiP~Vq~~v~~~Fgk~------~~~~inPDeaVA~GAAiQa~iL~g 384 (621)
T PRK05183 340 VGGSTRVPLVREAVGEFFGRT------PLTSIDPDKVVALGAAIQADILAG 384 (621)
T ss_pred ECCCCCCHHHHHHHHHHHCCC------CCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 288545668999999985989------666899016888769999998628
No 309
>PRK05920 aromatic acid decarboxylase; Validated
Probab=20.04 E-value=58 Score=12.96 Aligned_cols=11 Identities=55% Similarity=0.854 Sum_probs=5.4
Q ss_pred CCCCCCEEEEE
Q ss_conf 98888468875
Q gi|254781038|r 1 MSKIKKTVIGI 11 (363)
Q Consensus 1 m~~~~~~ILgI 11 (363)
|++|+++|+||
T Consensus 1 m~~mkrivvgI 11 (205)
T PRK05920 1 MSKMKRIVLAI 11 (205)
T ss_pred CCCCCEEEEEE
T ss_conf 99887599998
Done!