HHsearch results for GI: 254781038 and protein with PDBid: 1z6r_A
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=97.69 E-value=0.0033 Score=40.73 Aligned_cols=278 Identities=14% Similarity=0.146 Sum_probs=139.5
Q ss_pred CCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 88468875026022077887338888418988731133462121871455999999996999999999983898224536
Q gi|254781038|r 4 IKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDS 83 (363)
Q Consensus 4 ~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~ 83 (363)
...+++|||=+.+.+.++++ |.+++++.+...+.. .+. | ..-.+.+...+++.+.+++.+..++.+
T Consensus 83 ~~~~~igv~i~~~~i~~~l~---dl~g~ii~~~~~~~~-~~~------~----~~~l~~i~~~i~~~~~~~~~~~~~i~g 148 (406)
T 1z6r_A 83 EAWHYLSLRISRGEIFLALR---DLSSKLVVEESQELA-LKD------D----LPLLDRIISHIDQFFIRHQKKLERLTS 148 (406)
T ss_dssp TTCEEEEEEEETTEEEEEEE---ETTCCEEEEEEEECC-SSC------S----SCHHHHHHHHHHHHHHHTGGGCCCEEE
T ss_pred CCCEEEEEEECCCEEEEEEE---CCCCCEEEEEEEECC-CCC------H----HHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 86689999988988999998---699988988998436-798------6----999999999999999965775356469
Q ss_pred EEECCCCCHHH----------HH--HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC-C-CCCCEEEEEECCCEEE
Q ss_conf 87406643012----------56--779999999887514864333036776530132256-7-9984399970687479
Q gi|254781038|r 84 IAVTAGPGLMG----------GL--IVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDD-I-AFPYLVLLVSGGHTQI 149 (363)
Q Consensus 84 Iavt~gPG~~~----------~L--~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~-~-~~PfL~LlvSGGhT~l 149 (363)
|+++. ||.+- .+ .-+...++.|...+++|++=.|...+-+++-.+... . .--|+.+.++-|=-.=
T Consensus 149 igia~-pG~vd~~~g~v~~~~~~~~~~~~~l~~~l~~~~~~pv~v~ND~~a~a~aE~~~g~~~~~~~~~~i~~g~GiG~g 227 (406)
T 1z6r_A 149 IAITL-PGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAG 227 (406)
T ss_dssp EEEEE-SSEEETTTTEEEECTTCTTCSSBCHHHHHHHHHSSCEEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSEEEE
T ss_pred EEEEC-CCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEE
T ss_conf 98512-57877888889727887664688579999998788844456256899999984887788760233203688236
Q ss_pred EEECCCC------CCEECCCCCCCCHH-HHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHH
Q ss_conf 9983756------43000223363002-388889885288-761035566655405733345861110688754221024
Q gi|254781038|r 150 LLVRDVA------HYDRLGTTIDDALG-ECFDKIAKSLGL-PYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGL 221 (363)
Q Consensus 150 ~~~~~~~------~~~ilg~T~Dda~G-e~~DK~ar~Lgl-~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGL 221 (363)
+..++.- ..-.+|...=+.-| .| .|++.--| .|-+.+.+.+.+...... .+.+..... +++|.-+
T Consensus 228 ii~~g~~~~G~~g~ageiGh~~v~~~g~~c--~cG~~gclE~~~s~~al~~~~~~~~~~---~~~~~l~~~--~~~~~~l 300 (406)
T 1z6r_A 228 VITDGHLLHAGSSSLVEIGHTQVDPYGKRC--YCGNHGCLETIASVDSILELAQLRLNQ---SMSSMLHGQ--PLTVDSL 300 (406)
T ss_dssp EEETTEETTTTSSCCBCGGGSBSCTTSCBC--TTSCBSBTHHHHSHHHHHHHHHHHHTT---CTTCGGGSS--CCCHHHH
T ss_pred EEECCEEEECCCCCCCEECCEEECCCCCCC--CCCCCCCHHHEECHHHHHHHHHHHHCC---CCCHHHCCC--CCCHHHH
T ss_conf 878994776788864231231666888746--788877315323399999999986314---530232155--5667999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHH-HHHHHHHHHHHHHHC
Q ss_conf 5899999985112012106889999999999999999999999987621445523654133458-799999999999868
Q gi|254781038|r 222 KTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVAS-NHFIRASLIDLCVLH 300 (363)
Q Consensus 222 kTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaa-N~~LR~~l~~~~~~~ 300 (363)
..++ ++.+. .|...-+.+.+.|..-+...+..+ ++..+|++|+++. +..+.+.+++..+++
T Consensus 301 ~~~~----~~gd~--------~a~~i~~~~~~~l~~~l~nl~~~l------dP~~IvlgG~~~~~~~~~~~~l~~~i~~~ 362 (406)
T 1z6r_A 301 CQAA----LRGDL--------LAKDIITGVGAHVGRILAIMVNLF------NPQKILIGSPLSKAADILFPVISDSIRQQ 362 (406)
T ss_dssp HHHH----HTTCH--------HHHHHHHHHHHHHHHHHHHHHHHH------CCSEEEEESGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHH----HCCCH--------HHHHHHHHHHHHHHHHHHHHHHHH------CCCEEEEECHHHHCHHHHHHHHHHHHHHH
T ss_conf 9999----86999--------899999999999999999999987------98989997947837388999999999985
Q ss_pred -------CCEEEECCHHHCCCHHHHHHHHHH
Q ss_conf -------988996287887725899999999
Q gi|254781038|r 301 -------GFRFVAPPARLCTDNAVMIAWAAL 324 (363)
Q Consensus 301 -------~~~~~~P~~~~ctDNAaMIA~ag~ 324 (363)
.+.+.++. ..|++..+|.|-+
T Consensus 363 ~~~~~~~~~~i~~s~---~~~~a~~~GAAll 390 (406)
T 1z6r_A 363 ALPAYSQHISVESTQ---FSNQGTMAGAALV 390 (406)
T ss_dssp SCHHHHTTCEEEECS---CCCCTTTTHHHHH
T ss_pred CCCCCCCCCEEEECC---CCCHHHHHHHHHH
T ss_conf 240247897799899---7981999999999