HHsearch results for GI: 254781038 and protein with PDBid: 1z6r_A

>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=97.69  E-value=0.0033  Score=40.73  Aligned_cols=278  Identities=14%  Similarity=0.146  Sum_probs=139.5

Q ss_pred             CCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf             88468875026022077887338888418988731133462121871455999999996999999999983898224536
Q gi|254781038|r    4 IKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDS   83 (363)
Q Consensus         4 ~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~   83 (363)
                      ...+++|||=+.+.+.++++   |.+++++.+...+.. .+.      |    ..-.+.+...+++.+.+++.+..++.+
T Consensus        83 ~~~~~igv~i~~~~i~~~l~---dl~g~ii~~~~~~~~-~~~------~----~~~l~~i~~~i~~~~~~~~~~~~~i~g  148 (406)
T 1z6r_A           83 EAWHYLSLRISRGEIFLALR---DLSSKLVVEESQELA-LKD------D----LPLLDRIISHIDQFFIRHQKKLERLTS  148 (406)
T ss_dssp             TTCEEEEEEEETTEEEEEEE---ETTCCEEEEEEEECC-SSC------S----SCHHHHHHHHHHHHHHHTGGGCCCEEE
T ss_pred             CCCEEEEEEECCCEEEEEEE---CCCCCEEEEEEEECC-CCC------H----HHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             86689999988988999998---699988988998436-798------6----999999999999999965775356469


Q ss_pred             EEECCCCCHHH----------HH--HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC-C-CCCCEEEEEECCCEEE
Q ss_conf             87406643012----------56--779999999887514864333036776530132256-7-9984399970687479
Q gi|254781038|r   84 IAVTAGPGLMG----------GL--IVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDD-I-AFPYLVLLVSGGHTQI  149 (363)
Q Consensus        84 Iavt~gPG~~~----------~L--~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~-~-~~PfL~LlvSGGhT~l  149 (363)
                      |+++. ||.+-          .+  .-+...++.|...+++|++=.|...+-+++-.+... . .--|+.+.++-|=-.=
T Consensus       149 igia~-pG~vd~~~g~v~~~~~~~~~~~~~l~~~l~~~~~~pv~v~ND~~a~a~aE~~~g~~~~~~~~~~i~~g~GiG~g  227 (406)
T 1z6r_A          149 IAITL-PGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAG  227 (406)
T ss_dssp             EEEEE-SSEEETTTTEEEECTTCTTCSSBCHHHHHHHHHSSCEEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSEEEE
T ss_pred             EEEEC-CCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEE
T ss_conf             98512-57877888889727887664688579999998788844456256899999984887788760233203688236


Q ss_pred             EEECCCC------CCEECCCCCCCCHH-HHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHH
Q ss_conf             9983756------43000223363002-388889885288-761035566655405733345861110688754221024
Q gi|254781038|r  150 LLVRDVA------HYDRLGTTIDDALG-ECFDKIAKSLGL-PYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGL  221 (363)
Q Consensus       150 ~~~~~~~------~~~ilg~T~Dda~G-e~~DK~ar~Lgl-~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGL  221 (363)
                      +..++.-      ..-.+|...=+.-| .|  .|++.--| .|-+.+.+.+.+......   .+.+.....  +++|.-+
T Consensus       228 ii~~g~~~~G~~g~ageiGh~~v~~~g~~c--~cG~~gclE~~~s~~al~~~~~~~~~~---~~~~~l~~~--~~~~~~l  300 (406)
T 1z6r_A          228 VITDGHLLHAGSSSLVEIGHTQVDPYGKRC--YCGNHGCLETIASVDSILELAQLRLNQ---SMSSMLHGQ--PLTVDSL  300 (406)
T ss_dssp             EEETTEETTTTSSCCBCGGGSBSCTTSCBC--TTSCBSBTHHHHSHHHHHHHHHHHHTT---CTTCGGGSS--CCCHHHH
T ss_pred             EEECCEEEECCCCCCCEECCEEECCCCCCC--CCCCCCCHHHEECHHHHHHHHHHHHCC---CCCHHHCCC--CCCHHHH
T ss_conf             878994776788864231231666888746--788877315323399999999986314---530232155--5667999


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHH-HHHHHHHHHHHHHHC
Q ss_conf             5899999985112012106889999999999999999999999987621445523654133458-799999999999868
Q gi|254781038|r  222 KTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVAS-NHFIRASLIDLCVLH  300 (363)
Q Consensus       222 kTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaa-N~~LR~~l~~~~~~~  300 (363)
                      ..++    ++.+.        .|...-+.+.+.|..-+...+..+      ++..+|++|+++. +..+.+.+++..+++
T Consensus       301 ~~~~----~~gd~--------~a~~i~~~~~~~l~~~l~nl~~~l------dP~~IvlgG~~~~~~~~~~~~l~~~i~~~  362 (406)
T 1z6r_A          301 CQAA----LRGDL--------LAKDIITGVGAHVGRILAIMVNLF------NPQKILIGSPLSKAADILFPVISDSIRQQ  362 (406)
T ss_dssp             HHHH----HTTCH--------HHHHHHHHHHHHHHHHHHHHHHHH------CCSEEEEESGGGGGHHHHHHHHHHHHHHH
T ss_pred             HHHH----HCCCH--------HHHHHHHHHHHHHHHHHHHHHHHH------CCCEEEEECHHHHCHHHHHHHHHHHHHHH
T ss_conf             9999----86999--------899999999999999999999987------98989997947837388999999999985


Q ss_pred             -------CCEEEECCHHHCCCHHHHHHHHHH
Q ss_conf             -------988996287887725899999999
Q gi|254781038|r  301 -------GFRFVAPPARLCTDNAVMIAWAAL  324 (363)
Q Consensus       301 -------~~~~~~P~~~~ctDNAaMIA~ag~  324 (363)
                             .+.+.++.   ..|++..+|.|-+
T Consensus       363 ~~~~~~~~~~i~~s~---~~~~a~~~GAAll  390 (406)
T 1z6r_A          363 ALPAYSQHISVESTQ---FSNQGTMAGAALV  390 (406)
T ss_dssp             SCHHHHTTCEEEECS---CCCCTTTTHHHHH
T ss_pred             CCCCCCCCCEEEECC---CCCHHHHHHHHHH
T ss_conf             240247897799899---7981999999999