Query gi|254781038|ref|YP_003065451.1| putative DNA-binding/iron metalloprotein/AP endonuclease [Candidatus Liberibacter asiaticus str. psy62] Match_columns 363 No_of_seqs 183 out of 2943 Neff 6.1 Searched_HMMs 23785 Date Wed Jun 1 01:17:54 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781038.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2ivn_A O-sialoglycoprotein end 100.0 0 0 774.7 34.7 325 6-354 1-325 (330) 2 3eno_A Putative O-sialoglycopr 100.0 0 0 769.9 32.7 328 3-354 3-330 (334) 3 3en9_A Glycoprotease, O-sialog 100.0 0 0 761.9 34.4 332 2-360 2-334 (540) 4 1hux_A Activator of (R)-2-hydr 100.0 2.9E-26 1.2E-30 199.8 21.7 255 4-330 1-261 (270) 5 2gel_A Putative GRAM negative 99.9 1.3E-22 5.4E-27 174.7 12.1 124 6-151 1-124 (231) 6 2i7n_A Pantothenate kinase 1; 99.9 9.6E-23 4.1E-27 175.5 7.8 223 79-321 98-358 (360) 7 2a6a_A Hypothetical protein TM 99.8 1E-19 4.4E-24 154.6 15.2 116 4-144 11-126 (218) 8 2ews_A Pantothenate kinase; PA 98.6 2.6E-05 1.1E-09 55.3 19.3 257 7-323 21-284 (287) 9 2e2o_A Hexokinase; acetate and 98.5 8.6E-05 3.6E-09 51.7 25.5 285 6-335 2-295 (299) 10 3cqy_A Anhydro-N-acetylmuramic 98.4 0.00016 6.9E-09 49.7 21.5 294 1-329 2-346 (370) 11 2qm1_A Glucokinase; alpha-beta 98.1 0.0009 3.8E-08 44.6 23.4 131 2-146 2-146 (326) 12 3ifr_A Carbohydrate kinase, FG 98.0 0.0012 5.1E-08 43.8 16.2 293 1-324 3-449 (508) 13 3eo3_A Bifunctional UDP-N-acet 97.9 0.002 8.2E-08 42.3 20.9 137 2-154 16-167 (333) 14 2aa4_A Mannac kinase, putative 97.8 0.0032 1.3E-07 40.9 20.0 253 6-326 1-287 (289) 15 1z6r_A MLC protein; transcript 97.7 0.0033 1.4E-07 40.7 14.7 278 4-324 83-390 (406) 16 2gup_A ROK family protein; sug 97.3 0.011 4.5E-07 37.2 17.7 125 5-154 3-138 (292) 17 3l0q_A Xylulose kinase; xlylul 97.3 0.011 4.7E-07 37.1 22.8 77 4-88 3-82 (554) 18 1z05_A Transcriptional regulat 97.3 0.013 5.3E-07 36.7 21.8 279 5-324 107-413 (429) 19 3h3n_X Glycerol kinase; ATP-bi 97.2 0.014 6E-07 36.4 25.7 82 1-88 1-82 (506) 20 2d4w_A Glycerol kinase; alpha 97.2 0.015 6.5E-07 36.1 23.2 135 168-324 309-452 (504) 21 2zf5_O Glycerol kinase; hypert 97.2 0.017 7.1E-07 35.8 24.0 288 4-324 1-442 (497) 22 2ch5_A NAGK protein; transfera 97.0 0.023 9.6E-07 34.9 22.0 113 3-126 3-117 (347) 23 1zc6_A Probable N-acetylglucos 96.9 0.027 1.1E-06 34.5 15.6 136 1-156 6-142 (305) 24 2dpn_A Glycerol kinase; thermu 96.9 0.03 1.2E-06 34.2 14.4 80 238-324 367-447 (495) 25 2hoe_A N-acetylglucosamine kin 96.7 0.041 1.7E-06 33.2 19.5 136 5-154 86-232 (380) 26 2p3r_A Glycerol kinase; glycer 96.5 0.051 2.1E-06 32.5 22.2 138 167-326 306-452 (510) 27 3g25_A Glycerol kinase; IDP007 96.3 0.018 7.6E-07 35.6 7.8 84 3-91 3-87 (501) 28 3ll3_A Gluconate kinase; xylul 96.2 0.074 3.1E-06 31.4 23.1 77 239-323 364-441 (504) 29 2w40_A Glycerol kinase, putati 96.1 0.089 3.8E-06 30.8 18.5 78 239-323 376-455 (503) 30 2ap1_A Putative regulator prot 95.9 0.1 4.3E-06 30.4 15.1 132 4-154 23-166 (327) 31 3mcp_A Glucokinase; structural 95.8 0.12 5E-06 30.0 16.3 108 3-127 6-125 (366) 32 1hjr_A Holliday junction resol 95.6 0.11 4.8E-06 30.1 9.5 103 7-121 2-105 (158) 33 2uyt_A Rhamnulokinase; rhamnos 95.5 0.11 4.6E-06 30.2 9.1 81 237-324 361-441 (489) 34 3epq_A Putative fructokinase; 95.2 0.18 7.4E-06 28.8 16.0 125 5-154 2-143 (302) 35 3htv_A D-allose kinase, alloki 95.2 0.19 7.8E-06 28.7 20.6 137 1-154 2-152 (310) 36 2dpn_A Glycerol kinase; thermu 94.4 0.28 1.2E-05 27.4 8.7 76 7-87 3-78 (495) 37 3jvp_A Ribulokinase; PSI-II, N 94.2 0.12 4.9E-06 30.0 6.4 83 4-88 3-94 (572) 38 3g25_A Glycerol kinase; IDP007 94.1 0.32 1.4E-05 27.0 8.9 135 168-324 310-453 (501) 39 3khy_A Propionate kinase; csgi 92.0 0.66 2.8E-05 24.9 14.3 52 252-304 293-345 (384) 40 1zbs_A Hypothetical protein PG 91.7 0.7 2.9E-05 24.7 16.3 129 8-160 2-133 (291) 41 3i8b_A Xylulose kinase; strain 90.2 0.97 4.1E-05 23.7 8.5 79 239-325 395-474 (515) 42 1saz_A Probable butyrate kinas 90.1 0.99 4.1E-05 23.7 19.6 284 6-331 2-349 (381) 43 1nbw_A Glycerol dehydratase re 88.9 1.2 5E-05 23.1 12.0 178 121-310 395-587 (607) 44 1woq_A Inorganic polyphosphate 88.7 1.2 5.2E-05 23.0 18.6 134 1-147 7-154 (267) 45 2d0o_A DIOL dehydratase-reacti 87.5 1.4 6.1E-05 22.5 15.1 208 101-321 372-598 (610) 46 3hz6_A Xylulokinase; xylulose, 86.8 1.6 6.7E-05 22.2 16.4 134 168-324 305-452 (511) 47 2zgy_A Plasmid segregation pro 83.9 2.1 9E-05 21.3 11.9 154 134-327 163-318 (320) 48 2uyt_A Rhamnulokinase; rhamnos 82.2 0.23 9.5E-06 28.1 0.1 76 1-87 1-80 (489) 49 2b06_A MUTT/nudix family prote 81.8 2.6 0.00011 20.8 5.4 72 1-87 1-76 (155) 50 2wge_A 3-oxoacyl-[acyl-carrier 79.6 3 0.00013 20.3 5.5 31 61-91 85-115 (416) 51 2e1z_A Propionate kinase; TDCD 79.5 2.9 0.00012 20.4 5.0 73 251-328 309-407 (415) 52 1zxo_A Conserved hypothetical 79.3 3.1 0.00013 20.2 10.9 250 8-306 2-263 (291) 53 2vu1_A Acetyl-COA acetyltransf 79.2 1.7 7.2E-05 22.0 3.8 72 43-122 14-90 (392) 54 1wl4_A Acetyl-coenzyme A acety 77.6 3.5 0.00015 19.9 6.4 72 44-122 18-93 (397) 55 3lma_A Stage V sporulation pro 76.4 3.7 0.00016 19.7 5.8 55 59-121 55-110 (347) 56 2itm_A Xylulose kinase, xylulo 74.5 4.2 0.00017 19.3 14.7 78 239-324 357-436 (484) 57 1g99_A Acetate kinase; alpha/b 72.6 4.6 0.00019 19.0 8.5 75 251-330 301-399 (408) 58 2iik_A 3-ketoacyl-COA thiolase 71.8 4.8 0.0002 18.9 5.4 62 61-126 57-122 (418) 59 2wu9_A 3-ketoacyl-COA thiolase 71.8 4.8 0.0002 18.9 5.3 60 60-123 56-120 (442) 60 1dkg_D Molecular chaperone DNA 71.6 4.8 0.0002 18.9 11.2 206 81-299 135-359 (383) 61 1sz2_A Glucokinase, glucose ki 71.4 4.9 0.00021 18.8 15.8 131 4-155 12-159 (332) 62 2fsj_A Hypothetical protein TA 70.8 5 0.00021 18.8 4.3 46 135-180 190-237 (346) 63 3lm2_A Putative kinase; struct 67.9 5.8 0.00024 18.4 4.9 121 1-153 2-130 (226) 64 2ib8_A Acetyl-COA acetyltransf 67.0 6 0.00025 18.2 4.5 72 44-123 20-96 (395) 65 16pk_A PGK, 3-phosphoglycerate 65.0 3.7 0.00016 19.7 2.7 42 273-315 229-289 (415) 66 1ulq_A Putative acetyl-COA ace 64.8 6.6 0.00028 18.0 4.8 75 45-126 15-94 (401) 67 3goa_A 3-ketoacyl-COA thiolase 62.7 7.2 0.0003 17.7 5.4 62 61-122 29-92 (387) 68 3h1q_A Ethanolamine utilizatio 61.9 7.4 0.00031 17.6 15.8 235 4-313 26-264 (272) 69 2ebd_A 3-oxoacyl-[acyl-carrier 61.8 7.4 0.00031 17.6 10.2 64 62-127 53-117 (309) 70 1ltk_A Phosphoglycerate kinase 58.9 4.7 0.0002 19.0 2.4 42 273-315 238-299 (425) 71 1wdk_C 3-ketoacyl-COA thiolase 58.2 6.4 0.00027 18.1 2.9 120 60-186 31-167 (390) 72 3h6e_A Carbohydrate kinase, FG 57.9 8.6 0.00036 17.1 7.2 49 273-323 387-436 (482) 73 3i33_A Heat shock-related 70 k 55.6 9.4 0.00039 16.9 20.0 197 80-300 157-378 (404) 74 3e1h_A PKSIIINC, putative unch 55.4 9.5 0.0004 16.9 5.1 67 51-119 96-169 (465) 75 1fw8_A PGK P72, phosphoglycera 55.2 5.5 0.00023 18.5 2.2 14 310-323 318-331 (416) 76 2dc1_A L-aspartate dehydrogena 54.8 9.7 0.00041 16.8 4.9 38 273-310 74-111 (236) 77 1vpe_A Phosphoglycerate kinase 54.3 6.7 0.00028 17.9 2.5 42 273-315 210-270 (398) 78 2xnk_A DNA topoisomerase 2-bin 53.7 10 0.00042 16.7 4.9 58 165-223 62-120 (292) 79 3o04_A LMO2201 protein, beta-k 53.1 10 0.00043 16.6 6.2 31 60-90 75-107 (413) 80 1i88_A CHS2, chalcone synthase 53.0 10 0.00043 16.6 5.0 56 62-119 105-161 (389) 81 1php_A 3-phosphoglycerate kina 51.0 6.6 0.00028 18.0 2.1 48 100-159 74-121 (394) 82 1a9x_B Carbamoyl phosphate syn 50.4 11 0.00047 16.4 5.6 44 80-126 231-274 (379) 83 1tvm_A PTS system, galactitol- 50.3 11 0.00048 16.3 3.3 29 276-304 25-53 (113) 84 1tqy_B Actinorhodin polyketide 49.0 12 0.0005 16.2 5.6 22 61-82 81-102 (415) 85 1qpg_A PGK, 3-phosphoglycerate 48.3 8.5 0.00036 17.2 2.3 21 100-120 77-97 (415) 86 3p4i_A Acetate kinase; structu 46.5 13 0.00054 15.9 19.7 70 252-326 295-389 (392) 87 2iwz_A 3-oxoacyl-[acyl-carrier 46.3 13 0.00055 15.9 6.5 21 60-80 98-118 (438) 88 1xes_A Dihydropinosylvin synth 46.2 13 0.00055 15.9 5.3 55 61-117 127-182 (413) 89 3kzu_A 3-oxoacyl-(acyl-carrier 44.3 14 0.00059 15.7 6.2 21 60-80 88-108 (428) 90 3euo_A Type III pentaketide sy 44.2 14 0.00059 15.7 5.2 67 51-119 67-140 (379) 91 2gqd_A 3-oxoacyl-[acyl-carrier 44.1 14 0.00059 15.7 6.4 23 60-82 99-121 (437) 92 1ee0_A 2-pyrone synthase; poly 43.7 14 0.0006 15.7 5.1 56 62-119 110-166 (402) 93 1ox0_A Beta ketoacyl-acyl carr 42.9 15 0.00061 15.6 5.6 23 60-82 94-116 (430) 94 1u0m_A Putative polyketide syn 42.3 15 0.00062 15.5 6.1 46 61-112 86-132 (382) 95 3czc_A RMPB; alpha/beta sandwi 40.8 16 0.00066 15.4 3.2 28 276-303 22-49 (110) 96 2wzb_A Phosphoglycerate kinase 40.8 16 0.00066 15.4 2.8 21 100-120 78-98 (416) 97 2vhw_A Alanine dehydrogenase; 40.3 3.2 0.00013 20.1 -0.9 54 240-293 306-359 (377) 98 2w36_A Endonuclease V; hypoxan 39.9 16 0.00068 15.3 3.4 100 5-118 36-138 (225) 99 1v6s_A Phosphoglycerate kinase 38.7 12 0.00051 16.1 1.9 55 62-120 37-91 (390) 100 1j5p_A Aspartate dehydrogenase 38.1 17 0.00072 15.1 5.9 44 138-181 63-112 (253) 101 2p0y_A Hypothetical protein LP 38.0 15 0.00063 15.5 2.2 15 169-183 113-127 (341) 102 3iyk_A VP5; icosahedral virus; 37.7 17 0.00073 15.0 5.1 113 107-231 351-483 (526) 103 1ted_A PKS18; thiolase fold, s 37.2 18 0.00075 15.0 4.2 56 62-119 116-172 (393) 104 2iir_A Acetate kinase; transfe 36.9 18 0.00075 15.0 10.2 74 251-329 301-400 (403) 105 3ho9_A 3-oxoacyl-[acyl-carrier 36.6 18 0.00076 14.9 6.4 23 60-82 89-111 (427) 106 3fk5_A 3-oxoacyl-synthase III; 35.7 19 0.00079 14.8 4.2 60 61-122 63-124 (338) 107 2f82_A HMG-COA synthase; HMGS1 35.4 19 0.00079 14.8 3.5 56 64-119 57-114 (450) 108 3a9l_A Poly-gamma-glutamate hy 35.2 13 0.00056 15.8 1.6 24 30-53 23-47 (216) 109 2gp6_A 3-oxoacyl-[acyl-carrier 34.6 19 0.00082 14.7 5.7 33 60-92 100-132 (434) 110 1t94_A Polymerase (DNA directe 34.2 20 0.00083 14.7 2.7 37 160-196 218-258 (459) 111 3js6_A Uncharacterized PARM pr 33.5 20 0.00085 14.6 13.4 49 136-184 185-233 (355) 112 2p0u_A Stilbenecarboxylate syn 33.4 20 0.00085 14.6 5.7 36 61-96 122-158 (413) 113 2ppv_A Uncharacterized protein 32.8 20 0.00083 14.7 2.1 20 296-315 278-297 (332) 114 3oit_A OS07G0271500 protein; t 31.5 22 0.00091 14.4 4.7 53 63-117 100-153 (387) 115 2d3m_A Pentaketide chromone sy 31.2 22 0.00092 14.3 5.6 57 61-119 117-174 (406) 116 1im4_A DBH; DNA polymerase PAL 30.4 21 0.00087 14.5 1.9 31 277-307 144-174 (221) 117 3goc_A Endonuclease V; alpha-b 30.3 21 0.00089 14.5 2.0 99 5-118 39-142 (237) 118 1ztc_A Hypothetical protein TM 29.7 23 0.00098 14.2 4.3 64 3-90 12-83 (221) 119 3h87_C Putative uncharacterize 29.6 21 0.00089 14.5 1.9 22 281-302 24-45 (73) 120 3ga2_A Endonuclease V; alpha-b 29.4 24 0.00099 14.1 3.1 99 5-118 39-144 (246) 121 2o2z_A Hypothetical protein; N 29.0 24 0.00099 14.1 2.0 14 297-310 280-293 (323) 122 1j3n_A 3-oxoacyl-(acyl-carrier 28.4 24 0.001 14.0 6.4 23 60-82 72-94 (408) 123 3a5r_A Benzalacetone synthase; 27.7 25 0.0011 13.9 4.4 83 61-147 100-190 (387) 124 1yuw_A Heat shock cognate 71 k 26.8 26 0.0011 13.8 15.4 238 51-324 115-376 (554) 125 2w6k_A COBE; biosynthetic prot 26.6 26 0.0011 13.8 5.7 53 61-120 25-77 (145) 126 2fxu_A Alpha-actin-1, actin, a 26.4 26 0.0011 13.8 3.8 50 274-329 294-348 (375) 127 1ygp_A Yeast glycogen phosphor 26.3 27 0.0011 13.8 2.2 53 63-117 134-187 (879) 128 1gnl_A HCP, hybrid cluster pro 25.5 27 0.0012 13.7 2.1 41 310-351 450-491 (544) 129 3bpp_A 1510-N membrane proteas 25.5 27 0.0012 13.7 2.8 44 80-126 38-83 (230) 130 3bux_B E3 ubiquitin-protein li 25.4 28 0.0012 13.7 5.1 62 246-316 91-157 (329) 131 3mfi_A DNA polymerase ETA; DNA 25.2 13 0.00054 16.0 0.1 17 312-328 473-489 (520) 132 3led_A 3-oxoacyl-acyl carrier 24.6 28 0.0012 13.6 5.4 54 61-118 119-174 (392) 133 1pjc_A Protein (L-alanine dehy 24.4 29 0.0012 13.5 4.1 54 240-294 305-358 (361) 134 1zow_A 3-oxoacyl-[acyl-carrier 24.3 29 0.0012 13.5 10.1 59 62-122 54-113 (313) 135 2p8u_A Hydroxymethylglutaryl-C 23.9 29 0.0012 13.5 2.2 32 64-95 78-111 (478) 136 1vl1_A 6PGL, 6-phosphogluconol 23.3 25 0.0011 14.0 1.3 31 56-91 26-56 (232) 137 1e5m_A KAS II, beta ketoacyl a 23.1 30 0.0013 13.4 5.6 35 60-94 78-116 (416) 138 2pjh_A Protein NPL4, nuclear p 23.1 30 0.0013 13.4 2.5 39 147-185 4-42 (80) 139 3gcg_B MAP, L0028 (mitochondri 22.8 31 0.0013 13.3 3.4 117 215-338 15-152 (172) 140 1l5w_A Maltodextrin phosphoryl 22.6 31 0.0013 13.3 2.1 54 62-118 82-137 (796) 141 3nbm_A PTS system, lactose-spe 22.0 32 0.0013 13.2 3.2 20 284-303 17-36 (108) 142 2gj4_A Glycogen phosphorylase, 21.5 33 0.0014 13.2 1.7 53 62-117 92-146 (824) 143 2c4m_A Glycogen phosphorylase; 21.3 33 0.0014 13.1 2.4 54 63-118 84-138 (796) 144 1f8y_A Nucleoside 2-deoxyribos 21.2 16 0.00065 15.4 -0.1 51 97-158 92-142 (157) 145 3gwa_A 3-oxoacyl-(acyl-carrier 21.1 33 0.0014 13.1 6.7 59 61-121 82-142 (365) 146 2c5m_A CTP synthase; cytidine 20.9 33 0.0014 13.1 2.2 93 75-177 17-120 (294) No 1 >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* Probab=100.00 E-value=0 Score=774.65 Aligned_cols=325 Identities=30% Similarity=0.452 Sum_probs=300.1 Q ss_pred CEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE Q ss_conf 46887502602207788733888841898873113346212187145599999999699999999998389822453687 Q gi|254781038|r 6 KTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIA 85 (363) Q Consensus 6 ~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Ia 85 (363) |+|||||||||+|||||++ +++|++|.+.+| |.+||||+||+|+|+|.++|+++++++|++++++++|||+|| T Consensus 1 M~iLgIeTScd~tsvAi~~----~~~il~~~~~~~---~~~~GGvvP~~A~r~H~~~l~~~i~~~l~~a~i~~~~id~ia 73 (330) T 2ivn_A 1 MLALGIEGTAHTLGIGIVS----EDKVLANVFDTL---TTEKGGIHPKEAAEHHARLMKPLLRKALSEAGVSLDDIDVIA 73 (330) T ss_dssp CCEEEEECSSSEEEEEEEC----SSCEEEEEEEEC---CCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCEEE T ss_pred CEEEEEECCCHHHEEEEEE----CCEEEEEEEEEE---ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEE T ss_conf 9099998364402899998----999999988831---267798585899999999999999999998499855686688 Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEECCCCC Q ss_conf 40664301256779999999887514864333036776530132256799843999706874799983756430002233 Q gi|254781038|r 86 VTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTI 165 (363) Q Consensus 86 vt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~ 165 (363) ||+|||+++||+||+++||+||+++++|+++|||||||++++++... +||++||||||||++++++. .+|++||+|+ T Consensus 74 vt~gPG~~~~L~vG~~~Ak~la~~~~~P~i~v~Hl~aH~~~~~~~~~--~~pl~llvSGGht~ll~~~~-~~~~ilg~T~ 150 (330) T 2ivn_A 74 FSQGPGLGPALRVVATAARALAVKYRKPIVGVNHCIAHVEITKMFGV--KDPVGLYVSGGNTQVLALEG-GRYRVFGETL 150 (330) T ss_dssp EEEESSCHHHHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHGGGGGTC--CSCEEEEECSSCEEEEEEET-TEEEEEEEBS T ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCC--CCCEEEEEECCCCEEEEECC-CCEEEEEEEC T ss_conf 81289841026999999999998608763762639999987653367--76347788268827999837-8538988864 Q ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHH Q ss_conf 63002388889885288761035566655405733345861110688754221024589999998511201210688999 Q gi|254781038|r 166 DDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADICA 245 (363) Q Consensus 166 Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaa 245 (363) |||+||+|||+||+|||||||||.||++|++++. .+.+|++. +++|||||||||+++|.+++. ++++.|+|+ T Consensus 151 Dda~Gea~DKvar~Lgl~~PgGp~ie~~a~~g~~-~~~~~~~~---~~~~fSFSGlkt~v~~~~~~~----~~~~~diaa 222 (330) T 2ivn_A 151 DIGIGNAIDVFARELGLGFPGGPKVEKLAEKGEK-YIELPYAV---KGMDLSFSGLLTEAIRKYRSG----KYRVEDLAY 222 (330) T ss_dssp SSCHHHHHHHHHHHHTCCSCHHHHHHHHHHTCCS-CCCCCCCE---ETTEECCHHHHHHHHHHHHHT----CSCHHHHHH T ss_pred CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC-CCCCCCCC---CCCCEECHHHHHHHHHHHHHC----CCCHHHHHH T ss_conf 7523678999998669988896777899870876-55688788---877230137888889998730----210588889 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHHH Q ss_conf 99999999999999999999876214455236541334587999999999998689889962878877258999999999 Q gi|254781038|r 246 SFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAWAALE 325 (363) Q Consensus 246 sfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ag~~ 325 (363) |||++|+++|++|+++|++.+ +++++|++||||||++||++|+++++++|+++++||++|||||||||||+|++ T Consensus 223 sfQ~ai~~~L~~k~~~A~~~~------~~~~lvv~GGVAAN~~LR~~L~~~~~~~g~~~~~Pp~~lCTDNAaMIA~aG~~ 296 (330) T 2ivn_A 223 SFQETAFAALVEVTERAVAHT------EKDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIAYTGLR 296 (330) T ss_dssp HHHHHHHHHHHHHHHHHHHHH------CCSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHSSCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHH------CCCCEEECCHHHHHHHHHHHHHHHHHHCCCEEECCCHHHCCHHHHHHHHHHHH T ss_conf 999999999999999999983------99752322157766999999999999759989858868740679999999999 Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99849998876200235787875775345 Q gi|254781038|r 326 RMEAGLPADDLSISPRSRWPLDEKAPSKI 354 (363) Q Consensus 326 ~~~~g~~~~~~~~~~~~rw~ld~~a~~~~ 354 (363) +|++|+..+..+..++||||||+...+|- T Consensus 297 ~~~~G~~~~l~~~~i~prw~Ld~~~v~w~ 325 (330) T 2ivn_A 297 MYKAGISFRLEETIVKQKFRTDEVEIVWH 325 (330) T ss_dssp HHHTTCCCCGGGGSCCTTCCGGGSBCTTC T ss_pred HHHCCCCCCHHHCCCCCCCCHHCCCCCEE T ss_conf 99769999877686688895230435000 No 2 >3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} Probab=100.00 E-value=0 Score=769.86 Aligned_cols=328 Identities=31% Similarity=0.472 Sum_probs=299.9 Q ss_pred CCCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 88846887502602207788733888841898873113346212187145599999999699999999998389822453 Q gi|254781038|r 3 KIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMD 82 (363) Q Consensus 3 ~~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id 82 (363) ..+|+||||||||||||+||++ +++++++.+. ..|.+||||+||+|+|+|.++|+++++++|++++++++||| T Consensus 3 m~~m~iLgIeTScd~tsvaiv~----~~~il~~~~~---~~~~~~GGvvP~~A~r~H~~~l~~~i~~~l~~a~i~~~~id 75 (334) T 3eno_A 3 MDPMIVLGLEGTAHTISCGIID----ESRILAMESS---MYRPKTGGIRPLDAAVHHSEVIDTVISRALEKAKISIHDID 75 (334) T ss_dssp CCCCEEEEEECSSSEEEEEEEE----SSCCCEEEEE---ECCCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCC T ss_pred CCCCEEEEEECCHHHEEEEEEE----CCEEEEEEEE---EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC T ss_conf 7775799998460420899998----9988899888---71078798886999999999999999999997498643302 Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEECC Q ss_conf 68740664301256779999999887514864333036776530132256799843999706874799983756430002 Q gi|254781038|r 83 SIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLG 162 (363) Q Consensus 83 ~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg 162 (363) +||||.|||+++||+||+++||+||+++++|+++|||||||++++++.++ .|||++||||||||+|+.+++ .+|++|| T Consensus 76 ~ia~t~gPGl~~~l~vG~~~Ak~la~~~~~Pli~v~HleaHi~~~~~~~~-~~~~l~llvSGGht~ll~~~~-~~~~ilg 153 (334) T 3eno_A 76 LIGFSMGPGLAPSLRVTATAARTISVLTGKPIIGVNHPLGHIEIGRRVTG-AIDPVMLYVSGGNTQVIAHVN-GRYRVLG 153 (334) T ss_dssp EEEEECSSSCHHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHHHHHHHT-CSSCEEEEESSSCEEEEEECS-SBEEEEE T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC-CCCEEEEEEECCCEEEEEECC-CEEEEEE T ss_conf 68843578732242067999999887426784523518889766441266-420047899369569996258-6378876 Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 23363002388889885288761035566655405733345861110688754221024589999998511201210688 Q gi|254781038|r 163 TTIDDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIAD 242 (363) Q Consensus 163 ~T~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~d 242 (363) +|+|||+||+|||+||+|||||||||.||++|++|+. .++||++. +++|||||||||++++.+++ ++.+.| T Consensus 154 ~T~Dda~Ge~~DKvar~LGl~~pgG~~ie~lA~~g~~-~~~~p~~~---~~~~fSFSGlktav~~~~~~-----~~~~~d 224 (334) T 3eno_A 154 ETLDIGIGNMIDKFAREAGIPFPGGPEIEKLAMKGTK-LLDLPYSV---KGMDTAFSGILTAALQYLKT-----GQAIED 224 (334) T ss_dssp EBSSCCHHHHHHHHHTTTTCCSCHHHHHHTTGGGCCS-CCCCCCCE---ETTEECCHHHHHHHHHHHHT-----TCCHHH T ss_pred EECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCC-CCCCCCCC---CCCCCCCCCHHHHHHHHHHH-----CCCCCC T ss_conf 7644466777899999749999997677877651884-56799888---86776054488999999874-----011022 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHH Q ss_conf 99999999999999999999999876214455236541334587999999999998689889962878877258999999 Q gi|254781038|r 243 ICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAWA 322 (363) Q Consensus 243 iaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~a 322 (363) +|+|||++++++|++|+++|+..+ ++++|+++||||||++||++|+++++++++++++||++|||||||||||+ T Consensus 225 iaas~Q~~i~~~l~~~~~~al~~~------~~k~lvvsGGVAaN~~LR~~l~~~~~~~~~~~~~pp~~~ctDNAaMIA~a 298 (334) T 3eno_A 225 ISYSIQETAFAMLVEVLERALYVS------GKDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDREYCMDNGIMIAQA 298 (334) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------TCSEEEEESSGGGCHHHHHHHHHHHHHHTSEEECCCTTTTSCCTHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------CCCEEEECCCHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHH T ss_conf 118899999999999999999985------88805414857788999999999999759989889858724779999999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99999849998876200235787875775345 Q gi|254781038|r 323 ALERMEAGLPADDLSISPRSRWPLDEKAPSKI 354 (363) Q Consensus 323 g~~~~~~g~~~~~~~~~~~~rw~ld~~a~~~~ 354 (363) |+++|++|+..+..+..++||||||+...+|. T Consensus 299 g~~~~~~g~~~~~~~~~~~pr~~ld~~~~~~~ 330 (334) T 3eno_A 299 ALLMYKSGVRMSVEETAVNPRFRIDEVDAPWI 330 (334) T ss_dssp HHHHHHTTCCCCGGGCCCCTTCCGGGSBCCCC T ss_pred HHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCC T ss_conf 99999859999865377689998445678755 No 3 >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* Probab=100.00 E-value=0 Score=761.93 Aligned_cols=332 Identities=30% Similarity=0.470 Sum_probs=301.7 Q ss_pred CCCCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 88884688750260220778873388884189887311334621218714559999999969999999999838982245 Q gi|254781038|r 2 SKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDM 81 (363) Q Consensus 2 ~~~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~i 81 (363) |..+|+||||||||||||+|||+ ++++|+++...+ .|.+||||+||+|+|+|.++|+++++++|+++ ++++| T Consensus 2 ~~~~m~vLgIETScddTs~Aiv~---~~~~il~~~~~~---~~~~~gGvvPe~A~r~H~~~l~~li~~al~~~--~~~~i 73 (540) T 3en9_A 2 AMDPMICLGLEGTAEKTGVGIVT---SDGEVLFNKTIM---YKPPKQGINPREAADHHAETFPKLIKEAFEVV--DKNEI 73 (540) T ss_dssp -CCSCEEEEEECSSSEEEEEEEE---TTSCEEEEEEEE---CCCCCSSSSCCCHHHHHHHHHHHHHHHHHHHS--CGGGC T ss_pred CCCCCEEEEEECCCCCEEEEEEE---CCCEEEEEEEEE---EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHC--CCCCC T ss_conf 97773799998666660789996---898099986787---43898998908999999999999999999758--95458 Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEC Q ss_conf 36874066430125677999999988751486433303677653013225679984399970687479998375643000 Q gi|254781038|r 82 DSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRL 161 (363) Q Consensus 82 d~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~il 161 (363) |+||||.||||++||+||+++||+||+++++|++||||||||++++++.++.+|| |+||||||||+++.+.+ .+|++| T Consensus 74 d~IavT~gPGl~g~L~vG~~~Ak~La~~~~iPli~V~HleaH~~a~~~~~~~~~p-l~llvSGGht~li~~~~-~~~~il 151 (540) T 3en9_A 74 DLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEIGKLTTEAEDP-LTLYVSGGNTQVIAYVS-KKYRVF 151 (540) T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHHHHTCCEEEEEHHHHHHHHHHHHSSCSSC-EEEEECSSCEEEEEEET-TEEEEE T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCC-EEEEECCCCEEEEEECC-CCEEEE T ss_conf 8899957997346389999999999996399815633898867433233456674-58998379737999836-426998 Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 22336300238888988528876103556665540573334586111068875422102458999999851120121068 Q gi|254781038|r 162 GTTIDDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIA 241 (363) Q Consensus 162 g~T~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~ 241 (363) |+|+|||+||+|||+||+|||||||||.+|++|.+|++ .+.+|.+. +++|||||||||++++.+++. ++++ T Consensus 152 g~T~Dda~Ge~fDKvAr~Lgl~~pgG~~ie~lA~~g~~-~~~~~~~~---~~~~fSFSGlktav~~~~~~~-----~~~~ 222 (540) T 3en9_A 152 GETLDIAVGNCLDQFARYVNLPHPGGPYIEELARKGKK-LVDLPYTV---KGMDIAFSGLLTAAMRAYDAG-----ERLE 222 (540) T ss_dssp EEBSSSCHHHHHHHHHHHTTCCSSCHHHHHHHHHTCCC-CCCCCCCE---ETTEECCHHHHHHHHHHHHTT-----CCHH T ss_pred EEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC-CCCCCCCC---CCCCCCCCCHHHHHHHHHHCC-----CCHH T ss_conf 76068313789999998648778982789999860886-55688779---998647886879999998739-----9899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHH Q ss_conf 89999999999999999999999987621445523654133458799999999999868988996287887725899999 Q gi|254781038|r 242 DICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAW 321 (363) Q Consensus 242 diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ 321 (363) |||+|||++++++|++++++|+..+ ++++|+++||||||++||++|+++++++++++++||++||||||||||| T Consensus 223 diaas~Q~~i~~~L~~~~~~a~~~~------~~~~lvvsGGVaaN~~LR~~l~~~~~~~~~~~~~p~~~~ctDNaaMIA~ 296 (540) T 3en9_A 223 DICYSLQEYAFSMLTEITERALAHT------NKGEVMLVGGVAANNRLREMLKAMCEGQNVDFYVPPKEFCGDNGAMIAW 296 (540) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------TCSEEEEESGGGGCHHHHHHHHHHHHHTTCEEECCCHHHHSSCHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------CCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHH T ss_conf 9999999999999999999999970------9297999854999899999999999876999987887871488999999 Q ss_pred HHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 999999849998876-200235787875775345798766 Q gi|254781038|r 322 AALERMEAGLPADDL-SISPRSRWPLDEKAPSKIGSGKRG 360 (363) Q Consensus 322 ag~~~~~~g~~~~~~-~~~~~~rw~ld~~a~~~~g~~~~~ 360 (363) +|+++|+.|.. +++ +..+.|||++|+....|+ ...++ T Consensus 297 ~g~~~~~~g~~-~~l~~~~i~p~~r~d~~~~~w~-~~~~~ 334 (540) T 3en9_A 297 LGLLMHKNGRW-MSLDETKIIPNYRTDMVEVNWI-KEIKG 334 (540) T ss_dssp HHHHHHHTCCC-CCGGGCCCCTTCCSTTSCCCCC------ T ss_pred HHHHHHHCCCC-CCHHHCCCCCCCCCCCCCCCHH-CCCCC T ss_conf 99999975999-9866576313899621304410-05765 No 4 >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 Probab=99.95 E-value=2.9e-26 Score=199.78 Aligned_cols=255 Identities=18% Similarity=0.192 Sum_probs=190.8 Q ss_pred CCCEEEEEE---CCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 884688750---26022077887338888418988731133462121871455999999996999999999983898224 Q gi|254781038|r 4 IKKTVIGIE---TSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISD 80 (363) Q Consensus 4 ~~~~ILgIE---TScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~ 80 (363) |+|+.|||| |+ |.+++++ +++++++....+. +..+. .....+.+.|++++....+ T Consensus 1 m~m~~lGID~GsT~---tk~vv~d---e~~~i~~~~~~~~--------~~~~~--------~~~~~i~~~l~~~~~~~~~ 58 (270) T 1hux_A 1 MSIYTLGIDVGSTA---SKCIILK---DGKEIVAKSLVAV--------GTGTS--------GPARSISEVLENAHMKKED 58 (270) T ss_dssp -CCEEEEEEECSSE---EEEEEEE---TTTEEEEEEEEEC--------CSSCC--------HHHHHHHHHHHHHTCCGGG T ss_pred CCCEEEEEEECHHH---EEEEEEE---CCCEEEEEEEEEC--------CCCHH--------HHHHHHHHHHHHCCCCCCC T ss_conf 98289999948136---9999996---8994999999735--------89847--------8999999999970587554 Q ss_pred CCEEEECCCC-CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCC-CC Q ss_conf 5368740664-301256779999999887514864333036776530132256799843999706874799983756-43 Q gi|254781038|r 81 MDSIAVTAGP-GLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVA-HY 158 (363) Q Consensus 81 id~Iavt~gP-G~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~-~~ 158 (363) ++.+++|-.. .+ ...+|...|||+++|...++...+ .+++.+.++|+||.++.+++-. .. T Consensus 59 ~~~~~~tg~g~~~----------------~~~~~~~~v~E~~a~~~ga~~l~~--~~~~vi~igG~~t~~i~~~~g~~~~ 120 (270) T 1hux_A 59 MAFTLATGYGRNS----------------LEGIADKQMSELSCHAMGASFIWP--NVHTVIDIGGQDVKVIHVENGTMTN 120 (270) T ss_dssp CSEEEEESTTTTT----------------TTTTCSEEECHHHHHHHHHHHHCT--TCCEEEEEETTEEEEEEEETTEEEE T ss_pred EEEEEECCCHHHH----------------HHHHCCCCCCEEEHHHHHHHHHCC--CCCEEEEECCCCEEEEEECCCCEEE T ss_conf 2589734761877----------------776056885450099999998689--9999999889881999992896789 Q ss_pred EECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC Q ss_conf 00022336300238888988528876103556665540573334586111068875422102458999999851120121 Q gi|254781038|r 159 DRLGTTIDDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQ 238 (363) Q Consensus 159 ~ilg~T~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~ 238 (363) -..+++.|...|+++|++||.||+||| +++++|.+++. |.|+ ...+.+| .||.+.+.+++ .. T Consensus 121 ~~~~~~c~~GtG~~ld~~a~~lgl~~~---ei~~la~~~~~-----~~~i---~~~c~vF--a~s~i~~~~~~-----g~ 182 (270) T 1hux_A 121 FQMNDKCAAGTGRFLDVMANILEVKVS---DLAELGAKSTK-----RVAI---SSTCTVF--AESEVISQLSK-----GT 182 (270) T ss_dssp EEEESSCCTTSHHHHHHHHHHHTCCTT---THHHHHTTCCS-----CCCC---CCCSHHH--HHHHHHHHHHT-----TC T ss_pred EECCCCCCCHHHHHHHHHHHHHCCCHH---HHHHHHHCCCC-----CCCC---CCCHHHH--HHHHHHHHHHC-----CC T ss_conf 953775652266999999987099989---99999853799-----9783---7601275--78899999987-----99 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHH- Q ss_conf 0688999999999999999999999998762144552365413345879999999999986898899628788772589- Q gi|254781038|r 239 DIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAV- 317 (363) Q Consensus 239 ~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAa- 317 (363) ++.|||+++|++|++.+...+.+ ....+.+++.|||++|+.+|+.+++.. +.++++|| .+.+|+| T Consensus 183 ~~~dIaa~l~~~v~~~i~~~~~~---------~~~~~~vvl~GG~a~n~~l~~~l~~~l---~~~v~~p~--~~~~~gAl 248 (270) T 1hux_A 183 DKIDIIAGIHRSVASRVIGLANR---------VGIVKDVVMTGGVAQNYGVRGALEEGL---GVEIKTSP--LAQYNGAL 248 (270) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT---------TCCCSSEEEESGGGGCHHHHHHHHHHH---CSCEECCG--GGGGHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHH---------CCCCCCEEEECCCCCCHHHHHHHHHHH---CCCEEECC--CCCHHHHH T ss_conf 88999999999999999999973---------578896899788644099999999986---99778799--83277899 Q ss_pred HHHHHHHHHHHCC Q ss_conf 9999999999849 Q gi|254781038|r 318 MIAWAALERMEAG 330 (363) Q Consensus 318 MIA~ag~~~~~~g 330 (363) ++|+.|+++++++ T Consensus 249 GaAl~a~~~~~~~ 261 (270) T 1hux_A 249 GAALYAYKKAAKS 261 (270) T ss_dssp HHHHHHHHHTTC- T ss_pred HHHHHHHHHHHHC T ss_conf 9999999987614 No 5 >2gel_A Putative GRAM negative resuscitation promoting factor; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium LT2} PDB: 2gem_A 1okj_A Probab=99.89 E-value=1.3e-22 Score=174.66 Aligned_cols=124 Identities=19% Similarity=0.337 Sum_probs=99.3 Q ss_pred CEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE Q ss_conf 46887502602207788733888841898873113346212187145599999999699999999998389822453687 Q gi|254781038|r 6 KTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIA 85 (363) Q Consensus 6 ~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Ia 85 (363) |.||+||||++.+|||+.+ ++++++..... .|.|.+.|.++|+++|++++++++|||+|+ T Consensus 1 M~iLaIdTS~~~~sval~~----~~~i~~~~~~~----------------~r~hs~~L~~~i~~~L~~~~i~~~did~i~ 60 (231) T 2gel_A 1 MRILAIDTATEACSVALWN----NGTINAHFELC----------------PREHTQRILPMVQEILAASGASLNEIDALA 60 (231) T ss_dssp CEEEEEECSSSEEEEEEEE----TTEEEEEEEEC----------------CSCCHHHHHHHHHHHHHHTTCCGGGCSEEE T ss_pred CCEEEEECCCCCEEEEEEE----CCEEEEEEEEC----------------CHHHHHHHHHHHHHHHHHCHHHHHHHCEEE T ss_conf 9899999377271999999----99999999975----------------589999999999999875502123310799 Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEE Q ss_conf 406643012567799999998875148643330367765301322567998439997068747999 Q gi|254781038|r 86 VTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILL 151 (363) Q Consensus 86 vt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~ 151 (363) |+.|||+|||||||+++||+||+++++|++||+++++.+........ .-+++++ +-...-+++. T Consensus 61 v~~GPGSFTGlRig~s~akgla~~~~ip~igvssl~~lA~~~~~~~~-~~~i~~~-idArr~~~y~ 124 (231) T 2gel_A 61 FGRGPGSFTGVRIGIGIAQGLALGANLPMIGVSTLATMAQGAWRKTG-ATRVLAA-IDARMGEVYW 124 (231) T ss_dssp EECCSSCHHHHHHHHHHHHHHHHTTTCCEEEECHHHHHHHHHHHHHC-CSEEEEE-EEETTTEEEE T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC-CCCCEEE-EECCCCEEEE T ss_conf 97586513758899999999999748886752769999998664024-5432145-6447882999 No 6 >2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 2i7p_A* 3mk6_A* Probab=99.87 E-value=9.6e-23 Score=175.52 Aligned_cols=223 Identities=16% Similarity=0.126 Sum_probs=172.6 Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC---------------------------- Q ss_conf 2453687406643012567799999998875148643330367765301322---------------------------- Q gi|254781038|r 79 SDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLT---------------------------- 130 (363) Q Consensus 79 ~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~---------------------------- 130 (363) .++..|++|=|=.. -++..+...+++|++-+++|++.+.-..+. T Consensus 98 ~~~~~i~~TGGGA~--------k~~~~~~~~l~~~i~k~dEm~~li~G~~fl~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 169 (360) T 2i7n_A 98 SLHTTLCATGGGAF--------KFEEDFRMIADLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPY 169 (360) T ss_dssp ------CEESTTTT--------GGGTTC-------CCBCCHHHHHHHHHHHHHHHCBTTBCSEEEEESTTCTTTCEEEEE T ss_pred CCCCEEEEECCCHH--------HHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHCCCCCC T ss_conf 66618998678378--------8899999850996367048998999999998502358862388416786101123555 Q ss_pred -CCCCCCCEEEEEECCCEEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHC Q ss_conf -5679984399970687479998375643000223363002388889885288761035566655405733345861110 Q gi|254781038|r 131 -DDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLV 209 (363) Q Consensus 131 -~~~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~ 209 (363) .+..|||| |+..|+||.++.|++..+|+.+|+| ++|+.+++....|.+++|++++|+++|++||..++++|.+-+ T Consensus 170 ~~~~~~PfL-lvniGsGtsii~v~~~~~~~rigGt---~iGGgt~~GL~~Ll~~~~~~~ei~~lA~~G~~~~~Dl~v~dI 245 (360) T 2i7n_A 170 CLDNPYPML-LVNMGSGVSILAVYSKDNYKRVTGT---SLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDI 245 (360) T ss_dssp CCSSCCSEE-EEEESSSEEEEEEEETTEEEEEEEE---SCSHHHHHHHHHHHHCCCSHHHHHHHHHHCCGGGTSEEHHHH T ss_pred CCCCCCCEE-EEEECCCEEEEEEECCCCEEEECCC---CCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCEECCCC T ss_conf 667787469-9991797799999459855884685---751789999999952999999999998569953455141555 Q ss_pred CCCCCCCCCCHHHHHHHHHHH----HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHH Q ss_conf 688754221024589999998----5112012106889999999999999999999999987621445523654133458 Q gi|254781038|r 210 QGTLCDFSFSGLKTSVQKTIC----AFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVAS 285 (363) Q Consensus 210 ~~~~~dFSFSGLkTav~~~i~----~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaa 285 (363) .+ ++|||+||++.+....- +.+..++..++|+|+|+|..|.+.|..+...+... ++++.++++|||.+ T Consensus 246 ~g--~~~~~~gL~~~~~Assfgk~~~~~~~~~~~~eDia~Sll~mV~~nIg~ia~l~A~~------~~i~~Ivf~G~~~~ 317 (360) T 2i7n_A 246 YG--GDYERFGLQGSAVASSFGNMMSKEKRDSISKEDLARATLVTITNNIGSIARMCALN------ENIDRVVFVGNFLR 317 (360) T ss_dssp HS--SCBGGGTBCTTSEEETTTTTTSHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HTCCCEEEESGGGC T ss_pred CC--CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCCEEEEECCHHC T ss_conf 58--87665577889999870740013444458878899999999999999999999998------09998999782113 Q ss_pred HHHHHHHHHHHHH----HCCCEEEECCH-HHCCCHHHHHHH Q ss_conf 7999999999998----68988996287-887725899999 Q gi|254781038|r 286 NHFIRASLIDLCV----LHGFRFVAPPA-RLCTDNAVMIAW 321 (363) Q Consensus 286 N~~LR~~l~~~~~----~~~~~~~~P~~-~~ctDNAaMIA~ 321 (363) |..++..+.+.+. +.+++.+||.. .|++..+|++-. T Consensus 318 n~~~~~~~ls~a~~~~s~~~~~~~F~~~~gy~galGA~l~~ 358 (360) T 2i7n_A 318 INMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 358 (360) T ss_dssp SSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH T ss_conf 73989999999999734488179953772240799999975 No 7 >2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermotoga maritima MSB8} SCOP: c.55.1.9 c.55.1.9 Probab=99.84 E-value=1e-19 Score=154.58 Aligned_cols=116 Identities=20% Similarity=0.323 Sum_probs=92.7 Q ss_pred CCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE Q ss_conf 88468875026022077887338888418988731133462121871455999999996999999999983898224536 Q gi|254781038|r 4 IKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDS 83 (363) Q Consensus 4 ~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~ 83 (363) ..|.||+||||.+ +|+|+.+. .++......+ .|.|.+.|.++++++|++++++++|||. T Consensus 11 ~~M~iLaiDTS~~-~sval~~~----~~i~~~~~~~----------------~r~hse~L~~~i~~~L~~~~l~~~did~ 69 (218) T 2a6a_A 11 HHMNVLALDTSQR-IRIGLRKG----EDLFEISYTG----------------EKKHAEILPVVVKKLLDELDLKVKDLDV 69 (218) T ss_dssp --CEEEEEECSSS-EEEEEEET----TEEEEEEEES----------------CGGGGGHHHHHHHHHHHHHTCCGGGCSE T ss_pred CCCEEEEEECCCC-CEEEEEEC----CEEEEEEECC----------------CHHHHHHHHHHHHHHHHHCCCCHHHCCE T ss_conf 5460777982776-47999989----9999998326----------------6689999999999999985999788638 Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEC Q ss_conf 8740664301256779999999887514864333036776530132256799843999706 Q gi|254781038|r 84 IAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSG 144 (363) Q Consensus 84 Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSG 144 (363) |+|+.|||+|||||||+++||+||+++++|++||+++++.+..... +.|+++++-.+ T Consensus 70 i~v~~GPGsFTGlRIg~a~akgla~~~~ipl~~vssl~~la~~~~~----~~~i~v~ida~ 126 (218) T 2a6a_A 70 VGVGIGPGGLTGLRVGIATVVGLVSPYDIPVAPLNSFEMTAKSCPA----DGVVLVARRAR 126 (218) T ss_dssp EEEECCSSCHHHHHHHHHHHHHHHGGGTCCEEEECHHHHHHHTCSS----CEEEEEEEECS T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC----CCCCEEEEHHH T ss_conf 9995689808889899999999998649985545779999975433----57726879521 No 8 >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, SGC, transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 Probab=98.59 E-value=2.6e-05 Score=55.27 Aligned_cols=257 Identities=12% Similarity=0.034 Sum_probs=130.3 Q ss_pred EEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE Q ss_conf 68875026022077887338888418988731133462121871455999999996999999999983898224536874 Q gi|254781038|r 7 TVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAV 86 (363) Q Consensus 7 ~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iav 86 (363) +.+|||----.+-++++ |.+++++... .+ .+.+.+.. .+++ .+++.|++ T Consensus 21 m~IGIDiGGT~ik~~~~---d~~g~i~~~~-~~------------------~~~~~i~~----~i~~-----~~i~~Igi 69 (287) T 2ews_A 21 MKVGIDAGGTLIKIVQE---QDNQRTFKTE-LT------------------KNIDQVVE----WLNQ-----QQIEKLCL 69 (287) T ss_dssp CEEEEEECSSEEEEEEE---CSSCEEEEEE-EG------------------GGHHHHHH----HHHT-----SCCSEEEE T ss_pred EEEEEEECHHHEEEEEE---ECCCCEEEEE-EH------------------HHHHHHHH----HHHH-----HCCCEEEE T ss_conf 79999987355899999---0999899986-05------------------36999999----9876-----06888999 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC----CCCCCCCEEEEEECCCEE-EEEECCCCCCEEC Q ss_conf 06643012567799999998875148643330367765301322----567998439997068747-9998375643000 Q gi|254781038|r 87 TAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLT----DDIAFPYLVLLVSGGHTQ-ILLVRDVAHYDRL 161 (363) Q Consensus 87 t~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~----~~~~~PfL~LlvSGGhT~-l~~~~~~~~~~il 161 (363) | |||.. . +.-.+..+.--++-...+.....+. ....++.+ .+.+|... .....+..-+..+ T Consensus 70 ~-g~G~~-------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 135 (287) T 2ews_A 70 T-GGNAG-------V----IAENINIPAQIFVEFDAASQGLGILLKEQGHDLADYI--FANVGTGTSLHYFDGQSQRRVG 135 (287) T ss_dssp E-STTHH-------H----HHTTSSSCCEECCHHHHHHHHHHHHHHHTTCCCSCEE--EEEESSSEEEEEECSSCEEEEE T ss_pred E-EECCC-------H----HHHHEECCCCEECCHHHHHHHHHHHHCCCCCCCCCEE--EEECCCCEEEEEECCCCEEEEE T ss_conf 8-00701-------3----3142072674204166689999986143577642334--4530543222674377169840 Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCH Q ss_conf 22336300238888988528876103556665540573334586111068-87542210245899999985112012106 Q gi|254781038|r 162 GTTIDDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQG-TLCDFSFSGLKTSVQKTICAFDVLEKQDI 240 (363) Q Consensus 162 g~T~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~-~~~dFSFSGLkTav~~~i~~~~~~~~~~~ 240 (363) +.. ...|-.++.-+-..+....+ ++-.++..++............. ..+........... .. ........... T Consensus 136 g~g--~G~g~~~~~~~~~~~~~~~~--e~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~ 209 (287) T 2ews_A 136 GIG--TGGGMIQGLGYLLSQITDYK--QLTDMAQHGDRNTIDLKVRHIYKDTEPPIPGDLTAANF-GH-VLHHLDADFTP 209 (287) T ss_dssp EES--CSHHHHHHHHHHHHCCCCHH--HHHHHHTTCCCTTTCEETTTC-------CCTTSEEETT-TT-GGGCTTSCCCH T ss_pred CCC--CCCCEECCCCHHHCCCCCCH--HHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHCCHH-CC-HHHHHHHHHCC T ss_conf 356--21505405502214999724--77775004798644442024432676430022110010-00-12444443021 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHH-HHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHH Q ss_conf 889999999999999999999999987621445523654133458-7999999999998689889962878877258999 Q gi|254781038|r 241 ADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVAS-NHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMI 319 (363) Q Consensus 241 ~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaa-N~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMI 319 (363) .+.+.++++.+.+.|...+......+ ++..+|++|||++ |.+|++.+++..+.+++++++|+ ..|++..| T Consensus 210 ~~~a~~i~~~~~~~l~~~i~~~~~~~------~p~~IVlgGGv~~~~~~l~~~i~~~l~~~~~~i~~~~---~~~~~Gal 280 (287) T 2ews_A 210 SNKLAAVIGVVGEVVTTMAITVAREF------KTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVE---NGAFSGAI 280 (287) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT------TCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECT---TGGGHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCC------CCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEECC---CCCHHHHH T ss_conf 24689999999999999999875355------9883999896166029999999999975898899679---82386998 Q ss_pred HHHH Q ss_conf 9999 Q gi|254781038|r 320 AWAA 323 (363) Q Consensus 320 A~ag 323 (363) +.+- T Consensus 281 GAa~ 284 (287) T 2ews_A 281 GALY 284 (287) T ss_dssp HHHH T ss_pred HHHH T ss_conf 6998 No 9 >2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuclease-H fold, sugar kinase, glucose, conformational change; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* Probab=98.54 E-value=8.6e-05 Score=51.67 Aligned_cols=285 Identities=11% Similarity=0.016 Sum_probs=132.8 Q ss_pred CEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE Q ss_conf 46887502602207788733888841898873113346212187145599999999699999999998389822453687 Q gi|254781038|r 6 KTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIA 85 (363) Q Consensus 6 ~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Ia 85 (363) |++||||==--.|.++++ |.+++++...+... .+ |. ..=.+.+...+.+++++++....++-.++ T Consensus 2 m~~iGIDiGgT~~~~~l~---d~~G~il~~~~~~~--~~-------~~---~~~~~~~~~~i~~~i~~~~~~~~~~~gig 66 (299) T 2e2o_A 2 MIIVGVDAGGTKTKAVAY---DCEGNFIGEGSSGP--GN-------YH---NVGLTRAIENIKEAVKIAAKGEADVVGMG 66 (299) T ss_dssp CCEEEEEECSSCEEEEEE---CTTSCEEEEEEESC--CC-------HH---HHCHHHHHHHHHHHHHHHHTSCCSEEEEE T ss_pred CEEEEEEECHHHEEEEEE---CCCCCEEEEEEECC--CC-------CC---CCCHHHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 299999937003799999---49998999999278--99-------65---22099999999999998558985489870 Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEECCCCC Q ss_conf 40664301256779999999887514864333036776530132256799843999706874799983756430002233 Q gi|254781038|r 86 VTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTI 165 (363) Q Consensus 86 vt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~ 165 (363) ++. |+... .....+.+...+..|+.-.|...+.+...... .+ ......|+-.......+.......+... T Consensus 67 ~~g-~~~~~----~~~~~~~l~~~~~~~v~i~nd~~~a~~~~~~~----~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 136 (299) T 2e2o_A 67 VAG-LDSKF----DWENFTPLASLIAPKVIIQHDGVIALFAETLG----EP-GVVVIAGTGSVVEGYNGKEFLRVGGRGW 136 (299) T ss_dssp ETT-CCSHH----HHHHHHHHHTTSSSEEEEEEHHHHHHHHHHTT----SC-EEEEEESSSEEEEEECSSCEEEEECSCT T ss_pred CCC-CCCHH----HHHHHHHHHHCCCCCEEEECHHHHHHHHHCCC----CC-CEEEECCCCEEEEEEECCEEEEEECCCC T ss_conf 478-77602----36899999860389789974299999873478----88-0799715641577883351799704665 Q ss_pred CC----CHHH----HHHHHHHHCCCCCCHHHHHHHHHHHCCCCC-CCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 63----0023----888898852887610355666554057333-45861110688754221024589999998511201 Q gi|254781038|r 166 DD----ALGE----CFDKIAKSLGLPYPGGVEIEKAALMGDGKR-FKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLE 236 (363) Q Consensus 166 Dd----a~Ge----~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~-~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~ 236 (363) -. ..++ +.........-..|.++..+.+........ ..+.. ........ +.......+.+... .. T Consensus 137 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~a~~~~~~~~~--a~ 210 (299) T 2e2o_A 137 LLSDDGSAYWVGRKALRKVLKMMDGLENKTILYNKVLKTINVKDLDELVM-WSYTSSCQ---IDLVASIAKAVDEA--AN 210 (299) T ss_dssp TTCCTTSHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHTTCCSHHHHHH-HHHHHTTC---HHHHHTTHHHHHHH--HH T ss_pred CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH-HHHCCCCC---CHHHHHHCHHHHHH--HH T ss_conf 33676513300013220223344578898628899999967999999999-98505786---03555422154544--40 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHH Q ss_conf 21068899999999999999999999999876214455236541334587999999999998689889962878877258 Q gi|254781038|r 237 KQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNA 316 (363) Q Consensus 237 ~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNA 316 (363) .-..+|..+-+...+.|..-+...+..+ ++..++++|||+.|..+|+.+++.++++.+...+++ ++ T Consensus 211 --~gd~~A~~i~~~~~~~L~~~la~~~~~~------~p~~IvlgGgv~~~~~~~~~l~~~l~~~~~~~~~~~------~~ 276 (299) T 2e2o_A 211 --EGDTVAMDILKQGAELLASQAVYLARKI------GTNKVYLKGGMFRSNIYHKFFTLYLEKEGIISDLGK------RS 276 (299) T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHHHH------TCSEEEEESGGGGSHHHHHHHHHHHHHTTCEEECCS------CC T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHH------CCCEEEEECCHHCCHHHHHHHHHHHHCCCEECCCCC------CC T ss_conf --5999999999999999999999999861------997799989331276799999999733734156788------66 Q ss_pred HHHHHHHHHHHHCCCCCCC Q ss_conf 9999999999984999887 Q gi|254781038|r 317 VMIAWAALERMEAGLPADD 335 (363) Q Consensus 317 aMIA~ag~~~~~~g~~~~~ 335 (363) ..++.+-+-+-+.|.+.+. T Consensus 277 ~~~GAa~lA~~~~g~~~~~ 295 (299) T 2e2o_A 277 PEIGAVILAYKEVGCDIKK 295 (299) T ss_dssp HHHHHHHHHHHHHTCCGGG T ss_pred HHHHHHHHHHHHCCCCHHH T ss_conf 9999999999984998455 No 10 >3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, protein structure initiative; 2.30A {Shewanella oneidensis mr-1} Probab=98.43 E-value=0.00016 Score=49.73 Aligned_cols=294 Identities=18% Similarity=0.219 Sum_probs=163.3 Q ss_pred CCCCCCEEEEE--ECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCC------CCCCC-CH---HHHHHHHHHHHHHHH Q ss_conf 98888468875--02602207788733888841898873113346212------18714-55---999999996999999 Q gi|254781038|r 1 MSKIKKTVIGI--ETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGH------YGGVV-PE---VAARAHVDVLDILIK 68 (363) Q Consensus 1 m~~~~~~ILgI--ETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~------~GGv~-P~---~A~~~H~~~l~~li~ 68 (363) |++ ++.+|+ =||+|---+|+++.+....+++......+...-.+ ..+-. +. ...++-.+.....++ T Consensus 2 m~k--~~~IGlMSGTS~DGiD~alv~~dg~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~a~~i~ 79 (370) T 3cqy_A 2 MNK--AYYIGLMSGTSMDGVDAVLVDFAGEQPQLIGTHTETIPTHLLKGLQRLCLPGTDEINRLGRLDRSVGKLFALAVN 79 (370) T ss_dssp TTC--CEEEEEEECTTCCCEEEEEEECSSSSCEEEEEEEECCCHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHHHHHHHH T ss_pred CCC--CEEEEEECCHHHHHHEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 988--889999665315536048999808826998650533899999999985026987599999999999999999999 Q ss_pred HHHHHCCCCCCCCCEEEEC-----CCCCH--HHHHHHHHHHHHHHHHHHCCCC------------------CCCHHHHHH Q ss_conf 9999838982245368740-----66430--1256779999999887514864------------------333036776 Q gi|254781038|r 69 QTLLRANMQISDMDSIAVT-----AGPGL--MGGLIVGLMTAKAISYVSHKPF------------------YAINHLEGH 123 (363) Q Consensus 69 ~~l~~a~~~~~~id~Iavt-----~gPG~--~~~L~vG~~~Ak~la~~~~~Pl------------------i~VnH~~aH 123 (363) +.+++.+++..+||+|+.- --|.. .-.+.+| -+..||...++|+ +|+=|.. T Consensus 80 ~~i~~~~~~~~~Id~IG~HGQTi~H~P~~~~~~T~QiG--~~~~IA~~tgi~VV~DFR~~Dia~GGqGAPLvP~~h~~-- 155 (370) T 3cqy_A 80 NLLAKTKIAKDEIIAIGSHGQTVRHMPNLEVGFTLQIG--DPNTIATETGIDVIADFRRKDIALGGQGAPLVPAFHQQ-- 155 (370) T ss_dssp HHHHHHCCCGGGEEEEEEEEEEEEEETTSSSCEEEEES--CHHHHHHHHSSCEEECCHHHHHHTTSCCCCCHHHHHHH-- T ss_pred HHHHHHCCCCCCEEEECCCCCCEEEECCCCCCEEEECC--CHHHHHHCCCCCEEEEECCCHHHCCCCCCCCCHHHHHH-- T ss_conf 99764114544532774799875887467787068818--87787400588667540133766499999952166899-- Q ss_pred HHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEECCCCCCCCHHHH-HHHHHHHC-CCCCCH-------HHHHHH-H Q ss_conf 5301322567998439997068747999837564300022336300238-88898852-887610-------355666-5 Q gi|254781038|r 124 ILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGEC-FDKIAKSL-GLPYPG-------GVEIEK-A 193 (363) Q Consensus 124 ~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda~Ge~-~DK~ar~L-gl~yPg-------Gp~ie~-~ 193 (363) +.....-+ .+++==||=+.+-+..... -+++ .-|.-+|++ +|...|.. |.+|-- |...+. + T Consensus 156 -----Lf~~~~~~-~~~lNIGGIaNiT~~~~~~-~~~~--afD~GPgN~LiD~~~~~~~~~~~D~~G~~A~~G~v~~~ll 226 (370) T 3cqy_A 156 -----TFAQVGKK-RVILNIGGIANITYLPGNS-EEVL--GFDTGPGNTLIDAWVQQVKNESYDKNGAWAASGKTDPQLL 226 (370) T ss_dssp -----HHCCTTCC-EEEEEESSEEEEEEECSSS-SCCE--EEEEEESSHHHHHHHHHHHCCSSCGGGHHHHHSCCCHHHH T ss_pred -----HHHCCCCC-EEEEEEECCCEEEECCCCC-CCCE--EECCCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHHH T ss_conf -----86312411-3887530423676324688-7534--6524751368999999975988385723205885888999 Q ss_pred HHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 54057333458611106887542210245899999985112012106889999999999999999999999987621445 Q gi|254781038|r 194 ALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHK 273 (363) Q Consensus 194 A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~ 273 (363) .+.-+...|..+.|...++. +|++.-+.- .+.+ ...-...|+.+.+-+..++.+.+-+. .+ . + T Consensus 227 ~~ll~~~~f~~~~PKS~~re-~f~~~~~~~----~~~~---~~~l~~~D~~aTl~~~ta~sI~~~~~----~~----~-~ 289 (370) T 3cqy_A 227 AQLLSHPYFSLAYPKSTGRE-LFNQAWLEQ----QLSA---FNQLNEEDIQSTLLDLTCHSIAQDIL----KL----A-Q 289 (370) T ss_dssp HHHHTCGGGGSCSSCCCCSS-SSSHHHHHH----HTTT---CTTSCHHHHHHHHHHHHHHHHHHHHH----HH----C-S T ss_pred HHHHHHHHCCCCCCCCHHHH-CCCCCCHHH----HHHH---CCCCCHHHHHHHHHHHHHHHHHHHHH----HH----C-C T ss_conf 99986431025675520331-155320155----6542---02478067899999999999999999----72----3-6 Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCC----HHHHHHHHHHHHHHC Q ss_conf 52365413345879999999999986898899628788772----589999999999984 Q gi|254781038|r 274 QAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTD----NAVMIAWAALERMEA 329 (363) Q Consensus 274 ~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctD----NAaMIA~ag~~~~~~ 329 (363) ...++|+||=+-|.+|.++|++.+. +.++ .+.-++-.| -|.+.||.|+++++. T Consensus 290 ~~~~iv~GGG~~N~~L~~~l~~~l~--~~~v-~~~~~~gi~~d~~EA~~FA~La~~~~~~ 346 (370) T 3cqy_A 290 EGELFVCGGGAFNAELMQRLAALLP--GYRI-DTTSALGVDPKWAEGIAFAWLAMRYQLG 346 (370) T ss_dssp SEEEEEESGGGGCHHHHHHHHHHCT--TEEE-EEGGGGTCCTTTHHHHHHHHHHHHHHTT T ss_pred CCCEEEECCCCCCHHHHHHHHHHCC--CCEE-EEHHHHCCCHHHHHHHHHHHHHHHHHCC T ss_conf 8846998999768999999997678--9868-5289939984699999999999999869 No 11 >2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis V583} Probab=98.08 E-value=0.0009 Score=44.64 Aligned_cols=131 Identities=17% Similarity=0.149 Sum_probs=86.7 Q ss_pred CCCCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 88884688750260220778873388884189887311334621218714559999999969999999999838982245 Q gi|254781038|r 2 SKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDM 81 (363) Q Consensus 2 ~~~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~i 81 (363) ..|++.|||||--.-.|-+++++ .+++|+........... -|+ ...+.+...+++.+++++....++ T Consensus 2 ~~m~~~vLgiD~GgT~~~~~l~d---~~G~il~~~~~~~~~~~------~~~----~~~~~i~~~i~~~~~~~~~~~~~i 68 (326) T 2qm1_A 2 NAMDKKIIGIDLGGTTIKFAILT---TDGVVQQKWSIETNILE------DGK----HIVPSIIESIRHRIDLYNMKKEDF 68 (326) T ss_dssp CGGGCEEEEEEECSSEEEEEEEE---TTCCEEEEEEEECCCTT------TTT----THHHHHHHHHHHHHHHTTCCGGGE T ss_pred CCCCCEEEEEEECCCEEEEEEEC---CCCCEEEEEEEECCCCC------CHH----HHHHHHHHHHHHHHHHHCCCCCCE T ss_conf 97898599999873428999993---99979999997179888------989----999999999999999715765671 Q ss_pred CEEEECCCCCHH----------HHHH--HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC--CCCCCCEEEEEECCC Q ss_conf 368740664301----------2567--7999999988751486433303677653013225--679984399970687 Q gi|254781038|r 82 DSIAVTAGPGLM----------GGLI--VGLMTAKAISYVSHKPFYAINHLEGHILTARLTD--DIAFPYLVLLVSGGH 146 (363) Q Consensus 82 d~Iavt~gPG~~----------~~L~--vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~--~~~~PfL~LlvSGGh 146 (363) .+|+++. ||.. +.|. -....++.+...++.|+.=.|-..+.+++-.+.. .-.-+|+.+.+.-|- T Consensus 69 ~~igi~~-~G~vd~~~~~i~~~~~l~~~~~~~l~~~l~~~~~~~v~v~ND~~a~a~ae~~~g~~~~~~~~~~i~~gtGi 146 (326) T 2qm1_A 69 VGIGMGT-PGSVDIEKGTVVGAYNLNWTTVQPVKEQIESALGIPFALDNDANVAALGERWKGAGENNPDVIFITLGTGV 146 (326) T ss_dssp EEEEEEE-SSEEETTTTEEECBGGGTBCSCBCHHHHHHHHHCSCEEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSSE T ss_pred EEEEECC-CCCEECCCCCEEEECCCCCCCCCHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCCCCCEEEEECCCCE T ss_conf 3785224-33050666807630356744443389999998799889856588999999982888899977899627863 No 12 >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural genomics, transferase, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum atcc 11170} Probab=97.96 E-value=0.0012 Score=43.75 Aligned_cols=293 Identities=15% Similarity=0.079 Sum_probs=145.7 Q ss_pred CCCCCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 98888468875026022077887338888418988731133462121871455999999996999999999983898224 Q gi|254781038|r 1 MSKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISD 80 (363) Q Consensus 1 m~~~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~ 80 (363) |.+ .++|||||-..-.+-++++ |.++++++...........+-|.+-. -...-.+.+..++++++++++....+ T Consensus 3 ~~~-~kyvlgIDiGTts~Ka~l~---d~~g~il~~~~~~~~~~~~~~g~~eq--d~~~~~~~~~~~l~~l~~~~~~~~~~ 76 (508) T 3ifr_A 3 LAQ-GRQVIGLDIGTTSTIAILV---RLPDTVVAVASRPTTLSSPHPGWAEE--DPAQWWDNARAVLAELKTTAGESDWR 76 (508) T ss_dssp -----CEEEEEEECSSEEEEEEE---ETTTEEEEEEEEECCCBCSSTTCCEE--CHHHHHHHHHHHHHHHHHHHCGGGCC T ss_pred CCC-CCEEEEEECCCCCEEEEEE---ECCCCEEEEEEEECCCCCCCCCCEEE--CHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 778-9889999872234277899---58999999999856712599981899--99999999999999999963888677 Q ss_pred CCEEEEC-CCCCHHHH------H---------HHHHHH--------HHHHHHHHCCCCCCCHHHHHHH------------ Q ss_conf 5368740-66430125------6---------779999--------9998875148643330367765------------ Q gi|254781038|r 81 MDSIAVT-AGPGLMGG------L---------IVGLMT--------AKAISYVSHKPFYAINHLEGHI------------ 124 (363) Q Consensus 81 id~Iavt-~gPG~~~~------L---------~vG~~~--------Ak~la~~~~~Pli~VnH~~aH~------------ 124 (363) |.+|++| .+.+++.. | |..-.. .+.+....+.|+.+-+.. .++ T Consensus 77 i~aI~is~~~~~~v~~D~~G~pl~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tg~~~~~~~~~-~kl~wl~~~~p~~~~ 155 (508) T 3ifr_A 77 PGGICVTGMLPAVVLLDDRGAVLRPSIQQSDGRCGDEVAELRAEVDSEAFLARTGNGVTQQLVT-AKLRWIERHEPAVFG 155 (508) T ss_dssp EEEEEEEECSSCBEEECTTSCBCSCEECTTCCCCHHHHHHHHHHSCHHHHHHHHSSCSSTTSHH-HHHHHHHHHCHHHHH T ss_pred EEEEEEECCCCCEEEECCCCCCCCCCEECCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHH-HHHHHHHCCCCHHHC T ss_conf 0399997734788998899989520013056651768999873123999999858987757699-999998634813320 Q ss_pred ---------------HCCCCC----------------------------------------------------------- Q ss_conf ---------------301322----------------------------------------------------------- Q gi|254781038|r 125 ---------------LTARLT----------------------------------------------------------- 130 (363) Q Consensus 125 ---------------~~~~l~----------------------------------------------------------- 130 (363) +++... T Consensus 156 ~~~~~l~~~dyi~~~Ltg~~~~d~s~As~tgl~d~~~~~w~~~ll~~~gi~~~~lp~~~~~g~~~G~l~~~~a~~~gl~~ 235 (508) T 3ifr_A 156 AIATVCGSYDYINMLLTGERVVDRNWALEGGFIDLASGTVEADLVALAHIPPSAVPPAHPTHRVLGAVTAEAAALTGLPT 235 (508) T ss_dssp TCSEEECHHHHHHHHHHCCCCEEHHHHHHHTCEETTTTEECHHHHHTTTSCGGGSCCEECTTSEEEECCHHHHHHHCCCT T ss_pred CCEEECCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC T ss_conf 43331245433000126740564554434566665555226788876086400278657643314554588897518998 Q ss_pred -----------------CCCCCCCEEEEEECCCEEEEEECCCC-----CCEECCC---------CCCCCHHHHHHHHHHH Q ss_conf -----------------56799843999706874799983756-----4300022---------3363002388889885 Q gi|254781038|r 131 -----------------DDIAFPYLVLLVSGGHTQILLVRDVA-----HYDRLGT---------TIDDALGECFDKIAKS 179 (363) Q Consensus 131 -----------------~~~~~PfL~LlvSGGhT~l~~~~~~~-----~~~ilg~---------T~Dda~Ge~~DK~ar~ 179 (363) ....-|= .+.+|.|+|..+.+.... ....... ..--..|.+++-+.+. T Consensus 236 ~~~V~~g~~D~~aa~~g~g~~~~g-~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~w~~~~ 314 (508) T 3ifr_A 236 GLPVYGGAADHIASALAAGITRPG-DVLLKFGGAGDIIVASATAKSDPRLYLDYHLVPGLYAPNGCMAATGSALNWLAKL 314 (508) T ss_dssp TCEEECCEEHHHHHHHHTTCCSTT-EEEEEESSSEEEEECBSCCCCBTTBBCCBCSSTTCBCCEEEESSSHHHHHHHHHH T ss_pred CCEEEEECCCHHHHHHHCCCCCCC-CEEEEECCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 966876355056677603654468-5578407613788645886433454033100477544012110241799999998 Q ss_pred CCCCCCH--HHHHHHHHHHCCCC---CCCCCCHHCCCC-------CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH Q ss_conf 2887610--35566655405733---345861110688-------75422102458999999851120121068899999 Q gi|254781038|r 180 LGLPYPG--GVEIEKAALMGDGK---RFKFPCPLVQGT-------LCDFSFSGLKTSVQKTICAFDVLEKQDIADICASF 247 (363) Q Consensus 180 Lgl~yPg--Gp~ie~~A~~g~~~---~~~~P~p~~~~~-------~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasf 247 (363) ++..... -..+++++....+. -+-+| ...+. ...=+|.|+... .+..++..++ T Consensus 315 ~~~~~~~~~~~~l~~~a~~~~~~~~gl~~~P--~~~G~r~P~~~~~~~g~~~gl~~~-------------~~~~~l~rai 379 (508) T 3ifr_A 315 LAPEAGEAAHAQLDALAAEVPAGADGLVCLP--YFLGEKTPIHDPFASGTFTGLSLS-------------HTRGHLWRAL 379 (508) T ss_dssp HSTTCTTHHHHHHHHHHHTSCTTGGGCEEEC--CTTCCC----CCCCCCEEESCCTT-------------CCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEECC--CCCCCCCCCCCCCCCEEEECCCCC-------------CHHHHHHHHH T ss_conf 4354444566678999850888888604546--445778998786787577568640-------------0078999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCH-HHCCCHHHHHHHHHH Q ss_conf 99999999999999999987621445523654133458799999999999868988996287-887725899999999 Q gi|254781038|r 248 QVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPA-RLCTDNAVMIAWAAL 324 (363) Q Consensus 248 Q~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~-~~ctDNAaMIA~ag~ 324 (363) .+.++-.+...+ +.+++. ...++.++++||-+.|..+++.+.++. |.++..+.. +-..=-|||+|..+. T Consensus 380 ~Egia~~~~~~~----~~~~~~-g~~~~~i~~~GGgs~s~~~~Qi~Adv~---g~pV~~~~~~e~~a~GaA~lA~~~~ 449 (508) T 3ifr_A 380 LEAVALAFRHHV----AVLDDI-GHAPQRFFASDGGTRSRVWMGIMADVL---QRPVQLLANPLGSAVGAAWVAAIGG 449 (508) T ss_dssp HHHHHHHHHHHH----HHHHHH-TCCCCEEEEESGGGGCHHHHHHHHHHH---TSCEEEEECCSTHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHH----HHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHH---CCEEEECCCCCHHHHHHHHHHHHHC T ss_conf 998999879999----999971-999777999893301799999999988---9848975876279999999999974 No 13 >3eo3_A Bifunctional UDP-N-acetylglucosamine 2- epimerase/N-acetylmannosamine kinase; non-protein kinase, sialic acid biosynthesis; 2.84A {Homo sapiens} Probab=97.89 E-value=0.002 Score=42.30 Aligned_cols=137 Identities=12% Similarity=0.121 Sum_probs=84.9 Q ss_pred CCCCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 88884688750260220778873388884189887311334621218714559999999969999999999838982245 Q gi|254781038|r 2 SKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDM 81 (363) Q Consensus 2 ~~~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~i 81 (363) .+-.+-+||||=---.+.+++++ .+++++...+.. ..+ .+ ..-.+.+..++.+.+.++..+..++ T Consensus 16 ~~~~~~~lGIDiGGT~~~~al~d---~~G~vl~~~~~~--~~~------~~----~~~~~~i~~~i~~~~~~~~~~~~~i 80 (333) T 3eo3_A 16 FQGTLSALAVDLGGTNLRVAIVS---MKGEIVKKYTQF--NPK------TY----EERINLILQMCVEAAAEAVKLNCRI 80 (333) T ss_dssp ---CCEEEEEEECSSEEEEEEEE---TTSCEEEEEEEE--CCS------SH----HHHHHHHHHHHHHHHHHHHHTTCCE T ss_pred CCCCCEEEEEEECCCEEEEEEEC---CCCCEEEEEEEC--CCC------CH----HHHHHHHHHHHHHHHHHHHCCCCCE T ss_conf 48885499999771139999995---999799999968--999------97----8999999999999999861247866 Q ss_pred CEEEECCCCCHH----------HHH---HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-CCC-CCCCEEEEEECCC Q ss_conf 368740664301----------256---7799999998875148643330367765301322-567-9984399970687 Q gi|254781038|r 82 DSIAVTAGPGLM----------GGL---IVGLMTAKAISYVSHKPFYAINHLEGHILTARLT-DDI-AFPYLVLLVSGGH 146 (363) Q Consensus 82 d~Iavt~gPG~~----------~~L---~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~-~~~-~~PfL~LlvSGGh 146 (363) .+|+++ -||.+ +.+ .-++.+.+.|...+++|+.=.|-..+=+++-.+. ... .-.++.+.+.-|- T Consensus 81 ~~igia-~pG~vd~~~g~v~~s~~~~~~~~~~~l~~~l~~~~~~pv~v~ND~~a~a~aE~~~g~~~~~~~~~~i~~g~Gi 159 (333) T 3eo3_A 81 LGVGIS-TGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDTLHLPVWVDNDGNCAALAERKFGQGKGLENFVTLITGTGI 159 (333) T ss_dssp EEEEEE-C------------------------CCHHHHHHHHCSCEEEECHHHHHHHHHHHTSTTTTCSSEEEEEESSSE T ss_pred EEEEEE-CCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCHHHHHHCCCCCCCCCCEEEEECCCC T ss_conf 799994-2874656658243035554201377555666532398376646532001688761766689873289971566 Q ss_pred EEEEEECC Q ss_conf 47999837 Q gi|254781038|r 147 TQILLVRD 154 (363) Q Consensus 147 T~l~~~~~ 154 (363) .--+..++ T Consensus 160 g~~~~~~g 167 (333) T 3eo3_A 160 GGGIIHQH 167 (333) T ss_dssp EEEEEETT T ss_pred CEEEEEEC T ss_conf 30367506 No 14 >2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10 Probab=97.75 E-value=0.0032 Score=40.87 Aligned_cols=253 Identities=16% Similarity=0.146 Sum_probs=122.8 Q ss_pred CEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE Q ss_conf 46887502602207788733888841898873113346212187145599999999699999999998389822453687 Q gi|254781038|r 6 KTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIA 85 (363) Q Consensus 6 ~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Ia 85 (363) |+|||||----.|.++++ |.+++++....... ..+ .+.+.+...+.+.+++.. .+++.|+ T Consensus 1 m~~igiD~GGT~~~~~l~---d~~G~il~~~~~~~-~~~-------------~~~~~i~~~i~~~~~~~~---~~~~~ig 60 (289) T 2aa4_A 1 MTTLAIDIGGTKLAAALI---GADGQIRDRRELPT-PAS-------------QTPEALRDALSALVSPLQ---AHAQRVA 60 (289) T ss_dssp CCEEEEEECSSEEEEEEE---CTTCCEEEEEEEEC-CSS-------------CCHHHHHHHHHHHHTTTG---GGCSEEE T ss_pred CCEEEEEECCCCEEEEEE---CCCCCEEEEEEEEC-CCC-------------CCHHHHHHHHHHHHHHHH---HHCCEEE T ss_conf 969999988003899999---79996999999978-988-------------789999999999999988---6558469 Q ss_pred ECCCCCHH----------HHH--HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC-CCCCCEEEEEECCCEEEEEE Q ss_conf 40664301----------256--779999999887514864333036776530132256-79984399970687479998 Q gi|254781038|r 86 VTAGPGLM----------GGL--IVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDD-IAFPYLVLLVSGGHTQILLV 152 (363) Q Consensus 86 vt~gPG~~----------~~L--~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~-~~~PfL~LlvSGGhT~l~~~ 152 (363) ++. ||.+ +.+ ..+...++.|...+++|++=.|+..+.++.-..... ...-|+.+.+++|-.--+.. T Consensus 61 Ia~-~G~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pv~v~nd~~a~~~~e~~~~~~~~~~~~~~~~~~~~g~~~~~ 139 (289) T 2aa4_A 61 IAS-TGIIRDGSLLALNPHNLGGLLHFPLVKTLEQLTNLPTIAINDAQAAAWAEFQALDGDITDMVFITVSTGVGGGVVS 139 (289) T ss_dssp EEE-SSEEETTEEECSSGGGGGGGTTCCHHHHHHHHHCSCEEEEEHHHHHHHHHHHTSCTTCCCEEEEEESSSEEEEEEE T ss_pred EEE-CCCEEECCEEEECCCCCCHHCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEE T ss_conf 970-6621211104742534211149946999999879999993658898888887535886269999956887624775 Q ss_pred CCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHH Q ss_conf 375643000223363002388889885288761035--------566655405733345861110688754221024589 Q gi|254781038|r 153 RDVAHYDRLGTTIDDALGECFDKIAKSLGLPYPGGV--------EIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTS 224 (363) Q Consensus 153 ~~~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~yPgGp--------~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTa 224 (363) ++... .| ....+||. +.++ + .|.++ .+|.++ |..+|... T Consensus 140 ~g~~~---~g--~~~~~ge~----g~~~-~-~~~~~~~~~g~~g~le~~~----------------------S~~~l~~~ 186 (289) T 2aa4_A 140 GCKLL---TG--PGGLAGHI----GHTL-A-DPHGPVCGCGRTGCVEAIA----------------------SGRGIAAA 186 (289) T ss_dssp TTEEE---CC--TTSCCCCG----GGSB-S-CTTSCBCTTSCBSBHHHHH----------------------SHHHHHHT T ss_pred ECCEE---CC--CCCCCCEE----EEEE-E-CCCCCCCCCCCCCCCHHCC----------------------CHHHHHHH T ss_conf 06444---15--76545454----6446-5-5899857788878700013----------------------39999999 Q ss_pred H---------HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHH Q ss_conf 9---------9999851120121068899999999999999999999999876214455236541334587999999999 Q gi|254781038|r 225 V---------QKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLID 295 (363) Q Consensus 225 v---------~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~ 295 (363) . ....+..+..+ ..|...-+...+.|..-+...+..+ .+..++++||++.+..+.+.+++ T Consensus 187 ~~~~~~~~~~~~l~~~~~~gd-----~~a~~i~~~~~~~la~~i~~l~~~~------~p~~Ivl~G~i~~~~~~~~~~~~ 255 (289) T 2aa4_A 187 AQGELAGADAKTIFTRAGQGD-----EQAQQLIHRSARTLARLIADIKATT------DCQCVVVGGSVGLAEGYLALVET 255 (289) T ss_dssp CCGGGTTCCHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHHHHHHHHH------CCSEEEEEHHHHTSTTHHHHHHH T ss_pred HHHHHCCCCHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHH------CCCEEEEECHHHCCHHHHHHHHH T ss_conf 854432574056788876278-----7777779999999999999999986------98989997857626558999999 Q ss_pred HHHHC----CCEEEECCHHHCCCHHHHHHHHHHHH Q ss_conf 99868----98899628788772589999999999 Q gi|254781038|r 296 LCVLH----GFRFVAPPARLCTDNAVMIAWAALER 326 (363) Q Consensus 296 ~~~~~----~~~~~~P~~~~ctDNAaMIA~ag~~~ 326 (363) ...+. ..++..+. -.|+|..|+.+-+-+ T Consensus 256 ~l~~~~~~~~~~i~~s~---~~~~a~~iGAa~lA~ 287 (289) T 2aa4_A 256 YLAQEPAAFHVDLLAAH---YRHDAGLLGAALLAQ 287 (289) T ss_dssp HHTTSCGGGCCEEEECS---CSSCHHHHHHHHHHH T ss_pred HHHHCCCCCCCEEEECC---CCCCHHHHHHHHHHC T ss_conf 99844567898599558---899388999999876 No 15 >1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A Probab=97.69 E-value=0.0033 Score=40.73 Aligned_cols=278 Identities=14% Similarity=0.146 Sum_probs=139.5 Q ss_pred CCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE Q ss_conf 88468875026022077887338888418988731133462121871455999999996999999999983898224536 Q gi|254781038|r 4 IKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDS 83 (363) Q Consensus 4 ~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~ 83 (363) ...+++|||=+.+.+.++++ |.+++++.+...+.. .+. | ..-.+.+...+++.+.+++.+..++.+ T Consensus 83 ~~~~~igv~i~~~~i~~~l~---dl~g~ii~~~~~~~~-~~~------~----~~~l~~i~~~i~~~~~~~~~~~~~i~g 148 (406) T 1z6r_A 83 EAWHYLSLRISRGEIFLALR---DLSSKLVVEESQELA-LKD------D----LPLLDRIISHIDQFFIRHQKKLERLTS 148 (406) T ss_dssp TTCEEEEEEEETTEEEEEEE---ETTCCEEEEEEEECC-SSC------S----SCHHHHHHHHHHHHHHHTGGGCCCEEE T ss_pred CCCEEEEEEECCCEEEEEEE---CCCCCEEEEEEEECC-CCC------H----HHHHHHHHHHHHHHHHHCCCCCCCEEE T ss_conf 86689999988988999998---699988988998436-798------6----999999999999999965775356469 Q ss_pred EEECCCCCHHH----------HH--HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC-C-CCCCEEEEEECCCEEE Q ss_conf 87406643012----------56--779999999887514864333036776530132256-7-9984399970687479 Q gi|254781038|r 84 IAVTAGPGLMG----------GL--IVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDD-I-AFPYLVLLVSGGHTQI 149 (363) Q Consensus 84 Iavt~gPG~~~----------~L--~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~-~-~~PfL~LlvSGGhT~l 149 (363) |+++. ||.+- .+ .-+...++.|...+++|++=.|...+-+++-.+... . .--|+.+.++-|=-.= T Consensus 149 igia~-pG~vd~~~g~v~~~~~~~~~~~~~l~~~l~~~~~~pv~v~ND~~a~a~aE~~~g~~~~~~~~~~i~~g~GiG~g 227 (406) T 1z6r_A 149 IAITL-PGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAG 227 (406) T ss_dssp EEEEE-SSEEETTTTEEEECTTCTTCSSBCHHHHHHHHHSSCEEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSEEEE T ss_pred EEEEC-CCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEE T ss_conf 98512-57877888889727887664688579999998788844456256899999984887788760233203688236 Q ss_pred EEECCCC------CCEECCCCCCCCHH-HHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHH Q ss_conf 9983756------43000223363002-388889885288-761035566655405733345861110688754221024 Q gi|254781038|r 150 LLVRDVA------HYDRLGTTIDDALG-ECFDKIAKSLGL-PYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGL 221 (363) Q Consensus 150 ~~~~~~~------~~~ilg~T~Dda~G-e~~DK~ar~Lgl-~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGL 221 (363) +..++.- ..-.+|...=+.-| .| .|++.--| .|-+.+.+.+.+...... .+.+..... +++|.-+ T Consensus 228 ii~~g~~~~G~~g~ageiGh~~v~~~g~~c--~cG~~gclE~~~s~~al~~~~~~~~~~---~~~~~l~~~--~~~~~~l 300 (406) T 1z6r_A 228 VITDGHLLHAGSSSLVEIGHTQVDPYGKRC--YCGNHGCLETIASVDSILELAQLRLNQ---SMSSMLHGQ--PLTVDSL 300 (406) T ss_dssp EEETTEETTTTSSCCBCGGGSBSCTTSCBC--TTSCBSBTHHHHSHHHHHHHHHHHHTT---CTTCGGGSS--CCCHHHH T ss_pred EEECCEEEECCCCCCCEECCEEECCCCCCC--CCCCCCCHHHEECHHHHHHHHHHHHCC---CCCHHHCCC--CCCHHHH T ss_conf 878994776788864231231666888746--788877315323399999999986314---530232155--5667999 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHH-HHHHHHHHHHHHHHC Q ss_conf 5899999985112012106889999999999999999999999987621445523654133458-799999999999868 Q gi|254781038|r 222 KTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVAS-NHFIRASLIDLCVLH 300 (363) Q Consensus 222 kTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaa-N~~LR~~l~~~~~~~ 300 (363) ..++ ++.+. .|...-+.+.+.|..-+...+..+ ++..+|++|+++. +..+.+.+++..+++ T Consensus 301 ~~~~----~~gd~--------~a~~i~~~~~~~l~~~l~nl~~~l------dP~~IvlgG~~~~~~~~~~~~l~~~i~~~ 362 (406) T 1z6r_A 301 CQAA----LRGDL--------LAKDIITGVGAHVGRILAIMVNLF------NPQKILIGSPLSKAADILFPVISDSIRQQ 362 (406) T ss_dssp HHHH----HTTCH--------HHHHHHHHHHHHHHHHHHHHHHHH------CCSEEEEESGGGGGHHHHHHHHHHHHHHH T ss_pred HHHH----HCCCH--------HHHHHHHHHHHHHHHHHHHHHHHH------CCCEEEEECHHHHCHHHHHHHHHHHHHHH T ss_conf 9999----86999--------899999999999999999999987------98989997947837388999999999985 Q ss_pred -------CCEEEECCHHHCCCHHHHHHHHHH Q ss_conf -------988996287887725899999999 Q gi|254781038|r 301 -------GFRFVAPPARLCTDNAVMIAWAAL 324 (363) Q Consensus 301 -------~~~~~~P~~~~ctDNAaMIA~ag~ 324 (363) .+.+.++. ..|++..+|.|-+ T Consensus 363 ~~~~~~~~~~i~~s~---~~~~a~~~GAAll 390 (406) T 1z6r_A 363 ALPAYSQHISVESTQ---FSNQGTMAGAALV 390 (406) T ss_dssp SCHHHHTTCEEEECS---CCCCTTTTHHHHH T ss_pred CCCCCCCCCEEEECC---CCCHHHHHHHHHH T ss_conf 240247897799899---7981999999999 No 16 >2gup_A ROK family protein; sugar kinase, APC80695, sucrose, structural genomics, PSI, protein structure initiative; HET: SUC; 2.01A {Streptococcus pneumoniae TIGR4} SCOP: c.55.1.10 c.55.1.10 Probab=97.35 E-value=0.011 Score=37.22 Aligned_cols=125 Identities=19% Similarity=0.243 Sum_probs=65.3 Q ss_pred CCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE Q ss_conf 84688750260220778873388884189887311334621218714559999999969999999999838982245368 Q gi|254781038|r 5 KKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSI 84 (363) Q Consensus 5 ~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~I 84 (363) -|.|||||==--.+.++++ |.+++++....... |+ +.+.+...+++.+.+ .++++| T Consensus 3 ~~~~~~iDiGGT~ir~~l~---d~~g~ii~~~~~~t-----------~~-----~~~~~~~~i~~~~~~-----~~i~~I 58 (292) T 2gup_A 3 AMTIATIDIGGTGIKFASL---TPDGKILDKTSIST-----------PE-----NLEDLLAWLDQRLSE-----QDYSGI 58 (292) T ss_dssp -CCEEEEEEETTEEEEEEE---CTTCCEEEEEEECC-----------CS-----SHHHHHHHHHHHHTT-----SCCSEE T ss_pred CCEEEEEEECCHHEEEEEE---CCCCCEEEEEEEEC-----------CC-----CHHHHHHHHHHHHHH-----CCCCEE T ss_conf 8889999977024699999---18996999999728-----------76-----599999999998665-----278679 Q ss_pred EECC-CC-----CHH---HHH--HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEEC Q ss_conf 7406-64-----301---256--779999999887514864333036776530132256799843999706874799983 Q gi|254781038|r 85 AVTA-GP-----GLM---GGL--IVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVR 153 (363) Q Consensus 85 avt~-gP-----G~~---~~L--~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~ 153 (363) +++. || |.. +.+ .-+... +.+...+++|++=.|...+-+++-.....-.-.++.+.++-|--.=+..+ T Consensus 59 gia~pG~vd~~~g~i~~~~~~~~~~~~~~-~~~~~~~~~pv~~~ND~~a~a~aE~~~~~~~~~~~~v~ig~GiG~g~~~~ 137 (292) T 2gup_A 59 AMSVPGAVNQETGVIDGFSAVPYIHGFSW-YEALSSYQLPVHLENDANCVGLSELLAHPELENAACVVIGTGIGGAMIIN 137 (292) T ss_dssp EEEESSEECTTTCBEESCCSSGGGSSSBH-HHHTGGGCCCEEEEEHHHHHHHHHHHHCTTCSSEEEEEESSSEEEEEEET T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHCCCCEEEECHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC T ss_conf 99606752156672024333333357326-89998619949982167899899876266534214788626544300222 Q ss_pred C Q ss_conf 7 Q gi|254781038|r 154 D 154 (363) Q Consensus 154 ~ 154 (363) + T Consensus 138 g 138 (292) T 2gup_A 138 G 138 (292) T ss_dssp T T ss_pred C T ss_conf 2 No 17 >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* Probab=97.33 E-value=0.011 Score=37.09 Aligned_cols=77 Identities=12% Similarity=0.187 Sum_probs=51.6 Q ss_pred CCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 88468875026022077887338888418988731133462121871---455999999996999999999983898224 Q gi|254781038|r 4 IKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGV---VPEVAARAHVDVLDILIKQTLLRANMQISD 80 (363) Q Consensus 4 ~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv---~P~~A~~~H~~~l~~li~~~l~~a~~~~~~ 80 (363) |+.++||||-..-.+-++|+ |.++++++....... .+....|- -|+. =-+.+...+++++++++++..+ T Consensus 3 m~~Y~lgIDiGTts~Ka~l~---d~~G~i~~~~~~~~~-~~~~~~g~~Eqdp~~----~w~~~~~~l~~~~~~~~~~~~~ 74 (554) T 3l0q_A 3 LASYFIGVDVGTGSARAGVF---DLQGRMVGQASREIT-MFKPKADFVEQSSEN----IWQAVCNAVRDAVNQADINPIQ 74 (554) T ss_dssp -CCEEEEEEECSSEEEEEEE---ETTSCEEEEEEEECC-CEEEETTEEEECHHH----HHHHHHHHHHHHHHHHTCCGGG T ss_pred CCCEEEEEEECCCCEEEEEE---CCCCCEEEEEEEECC-CCCCCCCCEEECHHH----HHHHHHHHHHHHHHHCCCCHHH T ss_conf 78779999814545254588---499989999998566-176899948999999----9999999999999974999799 Q ss_pred CCEEEECC Q ss_conf 53687406 Q gi|254781038|r 81 MDSIAVTA 88 (363) Q Consensus 81 id~Iavt~ 88 (363) |.+|+++. T Consensus 75 I~aIgis~ 82 (554) T 3l0q_A 75 VKGLGFDA 82 (554) T ss_dssp EEEEEEEE T ss_pred EEEEEECC T ss_conf 69999888 No 18 >1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Probab=97.28 E-value=0.013 Score=36.73 Aligned_cols=279 Identities=15% Similarity=0.153 Sum_probs=138.7 Q ss_pred CCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE Q ss_conf 84688750260220778873388884189887311334621218714559999999969999999999838982245368 Q gi|254781038|r 5 KKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSI 84 (363) Q Consensus 5 ~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~I 84 (363) -.+++|||-..+.+.++++ |.+++++.....+.... -| ..-.+.+...+++.+.+++.+..++-+| T Consensus 107 ~~~~iGIdig~~~i~~~l~---dl~G~il~~~~~~~~~~-------~~----~~~~~~i~~~i~~~l~~~~~~~~~i~gI 172 (429) T 1z05_A 107 GWQFLSMRLGRGYLTIALH---ELGGEVLIDTKIDIHEI-------DQ----DDVLARLLFEIEEFFQTYAAQLDRVTSI 172 (429) T ss_dssp TEEEEEEEEETTEEEEEEE---ETTSCEEEEEEEECCCC-------BH----HHHHHHHHHHHHHHHHHTTTTCCEEEEE T ss_pred EEEEEEEEECCCEEEEEEE---CCCCCEEEEEEECCCCC-------CH----HHHHHHHHHHHHHHHHHCCCCCCCEEEE T ss_conf 0499999989998999998---49987899998348878-------87----8999999999999999757661465799 Q ss_pred EECCCCCHHH---H-------H-HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-CCCC-CCCEEEEEECCCEEEEE Q ss_conf 7406643012---5-------6-7799999998875148643330367765301322-5679-98439997068747999 Q gi|254781038|r 85 AVTAGPGLMG---G-------L-IVGLMTAKAISYVSHKPFYAINHLEGHILTARLT-DDIA-FPYLVLLVSGGHTQILL 151 (363) Q Consensus 85 avt~gPG~~~---~-------L-~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~-~~~~-~PfL~LlvSGGhT~l~~ 151 (363) +++. ||.+- + + .-++..++-|...+++|++=.|...+-+++-.+. .... -.|+.+.++-|=-.=+. T Consensus 173 gi~~-pG~vd~~~g~~~~~~~~~~~~~~l~~~l~~~~~~pV~v~NDa~a~alaE~~~g~~~~~~~~v~i~~g~GiG~gii 251 (429) T 1z05_A 173 AITL-PGLVNSEQGIVLQMPHYNVKNLALGPEIYKATGLPVFVANDTRAWALAEKLFGHSQDVDNSVLISIHHGLGAGIV 251 (429) T ss_dssp EEEE-SSEEETTTTEEEECSSSBCSSBCHHHHHHHHHCSCEEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSEEEEEE T ss_pred EEEE-CCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCHHHHHCCCCCCCCCCEEEEECCCCCCCCC T ss_conf 9962-786168887462489888589845899999979988994464521448776186668886415774478744435 Q ss_pred ECCC------CCCEECCCCCCCCHHHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHH Q ss_conf 8375------643000223363002388889885288-761035566655405733345861110688754221024589 Q gi|254781038|r 152 VRDV------AHYDRLGTTIDDALGECFDKIAKSLGL-PYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTS 224 (363) Q Consensus 152 ~~~~------~~~~ilg~T~Dda~Ge~~DK~ar~Lgl-~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTa 224 (363) .++. ..--.+|.+.-+--|.- ..|++.--| .|=+++.+.+.+...... ..|.++... -++++.-+ T Consensus 252 ~~G~l~~G~~~~aGeiGh~~v~~~g~~-c~cG~~gclE~~~S~~al~~~~~~~~~~--~~~~~l~~~--~~~~~~~i--- 323 (429) T 1z05_A 252 LDGRVLQGRHGNIGELGHIQIDPQGKR-CHCGNYGCLETVASSQAIRDQVTARIQA--GEPSCLATV--EEISIEDI--- 323 (429) T ss_dssp ETTEECCTTTTCTTBCTTSBCCTTCCB-CTTSCBSBTHHHHSHHHHHHHHHHHHHT--TCCCTTTTC--SSCCHHHH--- T ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCC-CCCCCCCCHHHCCCHHHHHHHHHHHHHC--CCCCCCCCC--CCCCHHHH--- T ss_conf 798110068875525554786799975-7688878601040499999999987613--664322453--33899999--- Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHH-HHHHHHHHHHHHHHC--- Q ss_conf 9999985112012106889999999999999999999999987621445523654133458-799999999999868--- Q gi|254781038|r 225 VQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVAS-NHFIRASLIDLCVLH--- 300 (363) Q Consensus 225 v~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaa-N~~LR~~l~~~~~~~--- 300 (363) .... ...++ .|...-+.+.+.|..-+...+..+ ++..+|++|+|+. +..+.+.+++..+++ T Consensus 324 -~~~a---~~gD~-----~a~~ii~~~~~~La~~i~nl~~~l------dPe~IVlgG~v~~~~~~l~~~i~~~i~~~~~~ 388 (429) T 1z05_A 324 -CAAA---ADGDP-----LAVDVIQQLGRYLGAAIAIVINLF------NPEKILIGGVINQAKSILYPSIEQCIREQSLP 388 (429) T ss_dssp -HHHH---HTTCH-----HHHHHHHHHHHHHHHHHHHHHHHH------CCSEEEEESGGGGGHHHHHHHHHHHHHHHSCH T ss_pred -HHHH---HCCCH-----HHHHHHHHHHHHHHHHHHHHHHHH------CCCEEEEECHHHHCHHHHHHHHHHHHHHHCCC T ss_conf -9999---83989-----999999999999999999999987------98989996925747688999999999985031 Q ss_pred ----CCEEEECCHHHCCCHHHHHHHHHH Q ss_conf ----988996287887725899999999 Q gi|254781038|r 301 ----GFRFVAPPARLCTDNAVMIAWAAL 324 (363) Q Consensus 301 ----~~~~~~P~~~~ctDNAaMIA~ag~ 324 (363) .+++.++. ..|++.+++.|-+ T Consensus 389 ~~~~~~~I~~s~---l~~~a~l~GAAll 413 (429) T 1z05_A 389 VYHQDLKLVESR---FYKQATMPGAALI 413 (429) T ss_dssp HHHTTCEEEECS---CSSCTTHHHHHHH T ss_pred CCCCCCEEEECC---CCCHHHHHHHHHH T ss_conf 257898899899---7981999999999 No 19 >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleotide-binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O Probab=97.23 E-value=0.014 Score=36.36 Aligned_cols=82 Identities=13% Similarity=0.217 Sum_probs=55.1 Q ss_pred CCCCCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 98888468875026022077887338888418988731133462121871455999999996999999999983898224 Q gi|254781038|r 1 MSKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISD 80 (363) Q Consensus 1 m~~~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~ 80 (363) |+++ ++|||||-..-.+-++|+ |.++++++...........+-|-+-.. ...--+.+..++++++.+++++..+ T Consensus 1 M~~~-~y~lgIDiGTts~Ka~l~---d~~g~~i~~~~~~~~~~~~~~g~~Eqd--~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (506) T 3h3n_X 1 MAEK-NYVMAIDQGTTSSRAIIF---DRNGKKIGSSQKEFPQYFPKSGWVEHN--ANEIWNSVQSVIAGAFIESGIRPEA 74 (506) T ss_dssp -CCC-CEEEEEEECSSEEEEEEE---ETTSCEEEEEEEECCCBCSSTTCCEEC--HHHHHHHHHHHHHHHHHHHTCCGGG T ss_pred CCCC-CEEEEEECCCCCEEEEEE---CCCCCEEEEEEEECCCCCCCCCCEEEC--HHHHHHHHHHHHHHHHHHCCCCHHH T ss_conf 9988-589999832203100068---189999999998567165899818889--9999999999999999985998788 Q ss_pred CCEEEECC Q ss_conf 53687406 Q gi|254781038|r 81 MDSIAVTA 88 (363) Q Consensus 81 id~Iavt~ 88 (363) |.+|++|. T Consensus 75 I~aI~is~ 82 (506) T 3h3n_X 75 IAGIGITN 82 (506) T ss_dssp EEEEEEEE T ss_pred EEEEEEEC T ss_conf 68999978 No 20 >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} Probab=97.20 E-value=0.015 Score=36.12 Aligned_cols=135 Identities=16% Similarity=0.093 Sum_probs=75.0 Q ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC-CCCCCCCHHCCCC-------CCCCCCCHHHHHHHHHHHHHCCCCCCC Q ss_conf 00238888988528876103556665540573-3345861110688-------754221024589999998511201210 Q gi|254781038|r 168 ALGECFDKIAKSLGLPYPGGVEIEKAALMGDG-KRFKFPCPLVQGT-------LCDFSFSGLKTSVQKTICAFDVLEKQD 239 (363) Q Consensus 168 a~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~-~~~~~P~p~~~~~-------~~dFSFSGLkTav~~~i~~~~~~~~~~ 239 (363) ..|.+++-..+.+......-...+..+...+. ..+-+| ...+. ...=+|.|+.. ..+ T Consensus 309 ~~G~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lP--~~~G~r~P~~~~~~~g~~~gl~~-------------~~~ 373 (504) T 2d4w_A 309 VTGSLVQWLRDNLGMFEDAPDVEWLAGKVQDNGGAYFVP--AFSGLFAPYWRPDARGALVGLTR-------------YVN 373 (504) T ss_dssp CSHHHHHHHHHTTCTTTTCSCTHHHHTTSSSCTTCEEEC--TTCCCSTTTCCCCSCEEEEEECS-------------SCC T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCEECC--CCCCCCCCCCCCCCCEEECCCCC-------------CCC T ss_conf 869999999873133335789999853034568847457--66787787768232505405676-------------545 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCH-HHCCCHHHH Q ss_conf 6889999999999999999999999987621445523654133458799999999999868988996287-887725899 Q gi|254781038|r 240 IADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPA-RLCTDNAVM 318 (363) Q Consensus 240 ~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~-~~ctDNAaM 318 (363) ..++..++.+.++-.+..-+ +.+++.....++.|+++||.+.|..+++.+.+.+ |.++..++. +-+.=-||| T Consensus 374 ~~~~~ra~~Egia~~~~~~~----~~l~~~~g~~~~~i~~~GGgs~s~~~~Qi~Advl---g~pV~~~~~~e~~alGaA~ 446 (504) T 2d4w_A 374 RNHIARAALEATAFQSREVV----DAMNADSGVDLTELRVDGGMVANELLMQFQADQL---GVDVVRPKVAETTALGAAY 446 (504) T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHSCCCCEEEEESGGGGCHHHHHHHHHHH---TSCEEEESCSCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHH---CCEEEECCCCCHHHHHHHH T ss_conf 89999999999999999999----9999863989887999895232599999999998---9925957988579999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254781038|r 319 IAWAAL 324 (363) Q Consensus 319 IA~ag~ 324 (363) +|..|. T Consensus 447 lA~~a~ 452 (504) T 2d4w_A 447 AAGIAV 452 (504) T ss_dssp HHHHHH T ss_pred HHHHHC T ss_conf 999973 No 21 >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, glycerol metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis KOD1} Probab=97.15 E-value=0.017 Score=35.83 Aligned_cols=288 Identities=15% Similarity=0.118 Sum_probs=142.3 Q ss_pred CCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE Q ss_conf 88468875026022077887338888418988731133462121871455999999996999999999983898224536 Q gi|254781038|r 4 IKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDS 83 (363) Q Consensus 4 ~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~ 83 (363) |+++|||||-..-..-++++ |.++++++.........+.+-|.+-.. ...--+.+...+++++++++++..+|.+ T Consensus 1 M~ky~lgIDiGTss~Ka~l~---d~~g~~~~~~~~~~~~~~~~~g~~Eqd--~~~~w~~~~~~~~~~~~~~~~~~~~I~a 75 (497) T 2zf5_O 1 MEKFVLSLDEGTTSARAIIF---DRESNIHGIGQYEFPQHYPRPGWVEHN--PEEIWDAQLRAIKDAIQSARIEPNQIAA 75 (497) T ss_dssp CCCEEEEEEECSSEEEEEEE---CTTCCEEEEEEEECCCBCCSTTCCEEC--HHHHHHHHHHHHHHHHHHHTCCGGGEEE T ss_pred CCCEEEEEECCCCCEEEEEE---ECCCCEEEEEEEECCCCCCCCCCEEEC--HHHHHHHHHHHHHHHHHHCCCCCCCEEE T ss_conf 99389999802535276699---588999999999776226899828999--9999999999999999975989312799 Q ss_pred EEECCC-CCHHHH----------------------HHHHH------------------HHHHHHHHHHCCC--------- Q ss_conf 874066-430125----------------------67799------------------9999988751486--------- Q gi|254781038|r 84 IAVTAG-PGLMGG----------------------LIVGL------------------MTAKAISYVSHKP--------- 113 (363) Q Consensus 84 Iavt~g-PG~~~~----------------------L~vG~------------------~~Ak~la~~~~~P--------- 113 (363) |+++.- .+.... -.... +.+|-+-+.-+.| T Consensus 76 I~is~~~~~~v~lD~~g~pl~~~i~w~D~r~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~ 155 (497) T 2zf5_O 76 IGVTNQRETTLVWDKDGKPLYNAIVWQCRRTAEMVEEIKREYGTMIKEKTGLVPDAYFSASKLKWLLDNVPGLREKAEKG 155 (497) T ss_dssp EEEEECSSCEEEECTTCCBSSCEECTTCCTTHHHHHHHHHHHHHHHHHHHSSCCCTTSHHHHHHHHHHHSTTHHHHHHTT T ss_pred EEEECCCCCEEEECCCCCEEECHHHCCCCCCHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHC T ss_conf 99935678889998999881320211343105679998751113566423883472429999999986498899999705 Q ss_pred ---CCCCHHHHHHHHCCCCCC----------------------------------------------------------- Q ss_conf ---433303677653013225----------------------------------------------------------- Q gi|254781038|r 114 ---FYAINHLEGHILTARLTD----------------------------------------------------------- 131 (363) Q Consensus 114 ---li~VnH~~aH~~~~~l~~----------------------------------------------------------- 131 (363) +..+.--..+.|++.+.. T Consensus 156 ~~~~~~~~d~l~~~LTG~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~i~~~g~~~G~v~~~~l~~~~pV~~ 235 (497) T 2zf5_O 156 EVMFGTVDTFLIYRLTGEHVTDYSNASRTMLFNIKKLDWDDELLELFDIPESVLPEVRESSEVYGYTKKELLGAEIPVSG 235 (497) T ss_dssp CCEEEEHHHHHHHHHHSCCEEEHHHHTTSSSEETTTTEECHHHHHHTTCCGGGCCEEECSEEEEEECCHHHHSSCCEEEE T ss_pred CEEECCHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHCCCCCCCCCCCEECCHHHCCCCCEEEE T ss_conf 71130776999998639964443165423355388788749999871999788898635765313126646699987997 Q ss_pred ------------CCCCCCEEEEEECCCEEEEEECCCC-----C---------------CEECCCCCCCCHHHHHHHHHHH Q ss_conf ------------6799843999706874799983756-----4---------------3000223363002388889885 Q gi|254781038|r 132 ------------DIAFPYLVLLVSGGHTQILLVRDVA-----H---------------YDRLGTTIDDALGECFDKIAKS 179 (363) Q Consensus 132 ------------~~~~PfL~LlvSGGhT~l~~~~~~~-----~---------------~~ilg~T~Dda~Ge~~DK~ar~ 179 (363) ....|- .+.+|.|++..+.+.... + |-+.|. =...|-+++-+... T Consensus 236 g~~D~~aa~~g~g~~~~g-~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~G~~~~w~~~~ 312 (497) T 2zf5_O 236 DAGDQQAALFGQAAFEAG-MVKATYGTGSFILVNTDKMVLYSDNLLTTIAWGLNGRVSYALEGS--IFVTGAAVQWLRDG 312 (497) T ss_dssp EEEHHHHHHHHTTCCSTT-CEEEEESSSEEEEEEEETCCCCCTTSEEEEEEEETTEEEEEEEEE--ESCSHHHHHHHHHT T ss_pred ECCHHHHHHHHCCCCCCC-CEEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHHH--HHHHHHHHHHHHHH T ss_conf 060488987502578899-436763564599995697301676645641045798624263889--99999999999986 Q ss_pred CCCCCCHHHHHHHHHHHCCC--CCCCCCCHHCCCC-------CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 28876103556665540573--3345861110688-------75422102458999999851120121068899999999 Q gi|254781038|r 180 LGLPYPGGVEIEKAALMGDG--KRFKFPCPLVQGT-------LCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVT 250 (363) Q Consensus 180 Lgl~yPgGp~ie~~A~~g~~--~~~~~P~p~~~~~-------~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~ 250 (363) ++.... -...+.++..-.. .-+-+|. ..+. ...=+|.||. ...+..++..++.+. T Consensus 313 ~~~~~~-~~~~~~~a~~~~~~~gl~~~P~--~~G~r~P~~d~~~rg~~~Gl~-------------~~~~~~~l~ravlEg 376 (497) T 2zf5_O 313 IKIIKH-ASETEELATKLESNEGVYFVPA--FVGLGAPYWDQFARGIIIGIT-------------RGTGREHLARATLEA 376 (497) T ss_dssp SCCCSC-GGGHHHHHTTSSSCTTCEEECC--TTCBCTTTCBTTCCEEEEEEC-------------TTCCHHHHHHHHHHH T ss_pred CCCCCH-HHHHHHHHHCCCCCCCEEEECC--CCCCCCCCCCCCCCEEEECCC-------------CCCCHHHHHHHHHHH T ss_conf 065530-6689999824679997598388--777678777845670675689-------------999989999999860 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCH-HHCCCHHHHHHHHHH Q ss_conf 99999999999999987621445523654133458799999999999868988996287-887725899999999 Q gi|254781038|r 251 VVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPA-RLCTDNAVMIAWAAL 324 (363) Q Consensus 251 i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~-~~ctDNAaMIA~ag~ 324 (363) ++-.+ +..++..++ ...++.|.++||.+.|..+++.+.+.+ |.++..++. +-..=-|||+|..|. T Consensus 377 ia~~~----~~~~~~l~~--~~~~~~i~~~GGga~n~~~~Qi~Adv~---g~pV~~~~~~ea~a~GaA~lA~~a~ 442 (497) T 2zf5_O 377 IAYLT----RDVVDEMEK--LVQIKELRVDGGATANDFLMQFQADIL---NRKVIRPVVKETTALGAAYLAGLAV 442 (497) T ss_dssp HHHHH----HHHHHHHTT--TSCCCCEEEESGGGGCHHHHHHHHHHH---TSCEEEESCSCHHHHHHHHHHHHHT T ss_pred HHHHH----HHHHHHHHH--CCCCCEEEEECCCHHCHHHHHHHHHHH---CCCEEECCCCCHHHHHHHHHHHHHC T ss_conf 89999----999999983--479876999658034689999999997---9905977988679999999999974 No 22 >2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, ribonuclease H fold, sugar kinase/HSP70/actin superfamily, domain rotation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* Probab=97.01 E-value=0.023 Score=34.93 Aligned_cols=113 Identities=15% Similarity=0.182 Sum_probs=64.3 Q ss_pred CCCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-CCCC Q ss_conf 888468875026022077887338888418988731133462121871455999999996999999999983898-2245 Q gi|254781038|r 3 KIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQ-ISDM 81 (363) Q Consensus 3 ~~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~-~~~i 81 (363) -|+.+.+|||-=--.|-++++ |.+++++...+..-.... ..-..+-.+.|..++++++++++++ ..++ T Consensus 3 ~m~~~~iGIDiGGTk~~~~l~---d~~G~il~~~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~g~~~~~~i 71 (347) T 2ch5_A 3 FMAAIYGGVEGGGTRSEVLLV---SEDGKILAEADGLSTNHW--------LIGTDKCVERINEMVNRAKRKAGVDPLVPL 71 (347) T ss_dssp SSSCEEEEEEECTTCEEEEEE---ETTSCEEEEEEECCCCHH--------HHCHHHHHHHHHHHHHHHHHHHTCCTTCCB T ss_pred CCCCEEEEEECCCHHEEEEEE---CCCCCEEEEEEECCCCCC--------CCCHHHHHHHHHHHHHHHHHHCCCCCCCCE T ss_conf 648789999906121288899---499999999994689966--------589999999999999999997499977644 Q ss_pred CEEEECCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC Q ss_conf 3687406643-01256779999999887514864333036776530 Q gi|254781038|r 82 DSIAVTAGPG-LMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILT 126 (363) Q Consensus 82 d~Iavt~gPG-~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~ 126 (363) ..+.+..... ....-..-.......-....+|++=.|...+.+.. T Consensus 72 ~~ig~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~i~nDa~a~~~~ 117 (347) T 2ch5_A 72 RSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIAT 117 (347) T ss_dssp SEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHH T ss_pred EEEEEECCCCCCCCCCEECCCHHHHHCCCCCCEEEEECHHHHHHHH T ss_conf 4433423665575312111412334325778719995669998876 No 23 >1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, structural genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum atcc 12472} SCOP: c.55.1.5 c.55.1.5 Probab=96.93 E-value=0.027 Score=34.46 Aligned_cols=136 Identities=12% Similarity=0.029 Sum_probs=77.9 Q ss_pred CCCCCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 98888468875026022077887338888418988731133462121871455999999996999999999983898224 Q gi|254781038|r 1 MSKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISD 80 (363) Q Consensus 1 m~~~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~ 80 (363) |+.+.+++||||----.+-+++++ .+++++...+.... .|+.-...-.+.+..++++++.++++...+ T Consensus 6 ~~~~m~y~iGIDiGgT~i~~~l~d---~~G~il~~~~~~~~---------~~~~~~~~~~~~i~~~i~~~~~~~gi~~~~ 73 (305) T 1zc6_A 6 MNPSIRYLIGVDGGGTGTRIRLHA---SDGTPLAMAEGGAS---------ALSQGIAKSWQAVLSTLEAAFQQAGLPAAP 73 (305) T ss_dssp --CCCCEEEEEEECSSCEEEEEEE---TTCCEEEEEEESCC---------CGGGCHHHHHHHHHHHHHHHHHHTTCCCCC T ss_pred CCCCCCEEEEEECCCCEEEEEEEC---CCCCEEEEEEECCC---------CCCCCHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 898886899999281008999997---99989999996699---------856699999999999999999974999654 Q ss_pred CCEEEE-CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCC Q ss_conf 536874-0664301256779999999887514864333036776530132256799843999706874799983756 Q gi|254781038|r 81 MDSIAV-TAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVA 156 (363) Q Consensus 81 id~Iav-t~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~ 156 (363) +..+.. ...||... ...............|+.-.|+..+=.+... .... ..+++.|++..-....... T Consensus 74 ~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~----~~~~-~~~~~~~~~~~g~~~~~~~ 142 (305) T 1zc6_A 74 ASACAIGLGLSGVHN---RQWAGEFESQAPGFARLSLATDGYTTLLGAH----GGQP-GIIVALGTGSIGEALYPDG 142 (305) T ss_dssp GGGEEEEEEESCCCT---TSHHHHHHHTCCCCSEEEEECHHHHHHHHHT----TTSS-EEEEEESSSEEEEEECTTS T ss_pred CCCEEEECCCCCCCC---CHHHHHHHHHHCCCCCEEEEHHHHHHHHHHC----CCCC-EEEEEECCCCEEEEEECCC T ss_conf 332332025677664---2047888886436873776035999986330----6898-6999974773589998783 No 24 >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Probab=96.87 E-value=0.03 Score=34.16 Aligned_cols=80 Identities=19% Similarity=0.186 Sum_probs=53.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCH-HHCCCHH Q ss_conf 106889999999999999999999999987621445523654133458799999999999868988996287-8877258 Q gi|254781038|r 238 QDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPA-RLCTDNA 316 (363) Q Consensus 238 ~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~-~~ctDNA 316 (363) .+..++.+++.+.+.-.+... ++..++.....++++.++||.+.|..+++.+.+.+ |.++..++. +-+.=-| T Consensus 367 ~~~~~l~rai~Egia~~~~~~----~~~~~~~~g~~~~~i~~~GGgs~s~~~~Qi~Adv~---g~pV~~~~~~e~~a~Ga 439 (495) T 2dpn_A 367 TSRAHLARAALEGVAFQVRDV----VLAMEEEAGVRLKVLKADGGMAQNRLFLKIQADLL---GVPVAVPEVTETTALGA 439 (495) T ss_dssp CCHHHHHHHHHHHHHHHHHHH----HHHHHTTTSCCCCCEEEESGGGGCHHHHHHHHHHH---TSCEEEESCSCHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHH----HHHHHHHCCCCCCEEEEECCHHHCHHHHHHHHHHH---CCEEEECCCCCHHHHHH T ss_conf 999999999998888899999----99998763999777999771033799999999997---99079778874799999 Q ss_pred HHHHHHHH Q ss_conf 99999999 Q gi|254781038|r 317 VMIAWAAL 324 (363) Q Consensus 317 aMIA~ag~ 324 (363) ||+|..|. T Consensus 440 A~lA~~a~ 447 (495) T 2dpn_A 440 ALMAGVGA 447 (495) T ss_dssp HHHHHHHH T ss_pred HHHHHHHC T ss_conf 99999975 No 25 >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Probab=96.68 E-value=0.041 Score=33.18 Aligned_cols=136 Identities=18% Similarity=0.203 Sum_probs=88.2 Q ss_pred CCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE Q ss_conf 84688750260220778873388884189887311334621218714559999999969999999999838982245368 Q gi|254781038|r 5 KKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSI 84 (363) Q Consensus 5 ~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~I 84 (363) ..+++|||=..+.+.++++ |.+++++........... -| ....+.+..++++.++..+....++.+| T Consensus 86 ~~~~igidig~~~i~~~l~---d~~g~vi~~~~~~~~~~~------~~----~~~~~~l~~~i~~~~~~~~~~~~~i~gI 152 (380) T 2hoe_A 86 CAYVLGIEVTRDEIAACLI---DASMNILAHEAHPLPSQS------DR----EETLNVMYRIIDRAKDMMEKLGSKLSAL 152 (380) T ss_dssp GCEEEEEEECSSEEEEEEE---ETTCCEEEEEEEECCSSC------CH----HHHHHHHHHHHHHHHHHHHHTTCCCCEE T ss_pred CCEEEEEEECCCEEEEEEE---CCCCCEEEEEEEECCCCC------CH----HHHHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 0789999999998999999---499989999987579888------88----9999999999999999854217864699 Q ss_pred EECCCCCHHH---H-------H-HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEEC Q ss_conf 7406643012---5-------6-779999999887514864333036776530132256799843999706874799983 Q gi|254781038|r 85 AVTAGPGLMG---G-------L-IVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVR 153 (363) Q Consensus 85 avt~gPG~~~---~-------L-~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~ 153 (363) +++. ||.+- + + .-++..++.|...+++|++=.|...+-+++-.+...-..-|+.+.++-|---=+..+ T Consensus 153 gia~-pG~vd~~~g~v~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~~~alaE~~~g~~~~~~~~i~~g~GiG~gii~~ 231 (380) T 2hoe_A 153 TVAA-PGPIDTERGIIIDPRNFPLSQIPLANLLKEKYGIEVWVENDADMGAVGEKWYTKRDDSFAWILTGKGIGAGIIID 231 (380) T ss_dssp EEEE-SSCEETTTTEECCCSSCTTBTSCHHHHHHHHHCSEEEEEEHHHHHHHHHHHHTTCCSCEEEEEESSSCEEEEEET T ss_pred EEEE-CCCEECCCCEEECCCCCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEC T ss_conf 9996-864607857594357888433547999999879988998274548999987435882499999537885059889 Q ss_pred C Q ss_conf 7 Q gi|254781038|r 154 D 154 (363) Q Consensus 154 ~ 154 (363) + T Consensus 232 G 232 (380) T 2hoe_A 232 G 232 (380) T ss_dssp T T ss_pred C T ss_conf 9 No 26 >2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} SCOP: c.55.1.4 c.55.1.4 PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* Probab=96.53 E-value=0.051 Score=32.54 Aligned_cols=138 Identities=16% Similarity=0.142 Sum_probs=74.4 Q ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHH--CCCCCCCCCC------HHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC Q ss_conf 300238888988528876103556665540--5733345861------11068875422102458999999851120121 Q gi|254781038|r 167 DALGECFDKIAKSLGLPYPGGVEIEKAALM--GDGKRFKFPC------PLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQ 238 (363) Q Consensus 167 da~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~--g~~~~~~~P~------p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~ 238 (363) -..|.+++-+.+.++..-..- ..+..+.. +...-+-+|. |..+ ....-+|.||.. .. T Consensus 306 ~~~G~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~gl~~lP~l~G~r~P~~d-~~~~g~~~Gl~~-------------~~ 370 (510) T 2p3r_A 306 FMAGASIQWLRDEMKLINDAY-DSEYFATKVQNTNGVYVVPAFTGLGAPYWD-PYARGAIFGLTR-------------GV 370 (510) T ss_dssp SCSHHHHHHHHHTSCCCCSSS-CHHHHHTTSSSCTTCEEECCTTCCBTTTCC-TTCCEEEEEECT-------------TC T ss_pred HHHHHHHHHHHHHHCCCCHHH-HHHHHHHCCCCCCCEEEECCCCCCCCCCCC-CCCCEEEECCCC-------------CC T ss_conf 999999999999732230356-799996046899977994787777788888-666757845877-------------79 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCH-HHCCCHHH Q ss_conf 06889999999999999999999999987621445523654133458799999999999868988996287-88772589 Q gi|254781038|r 239 DIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPA-RLCTDNAV 317 (363) Q Consensus 239 ~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~-~~ctDNAa 317 (363) +..++..++.+.+.-. ++..++..++.....++.+.++||-+.|..+++.+.+++ |.++..+.. +-..=-|| T Consensus 371 ~~~~~~rAvlEgia~~----~~~~~~~l~~~~g~~~~~I~~~GGgakn~~~~Qi~Adv~---g~pV~~~~~~e~~a~GaA 443 (510) T 2p3r_A 371 NANHIIRATLESIAYQ----TRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDIL---GTRVERPEVREVTALGAA 443 (510) T ss_dssp CHHHHHHHHHHHHHHH----HHHHHHHHHHHHCCCCSEEEEESGGGGCHHHHHHHHHHH---TSEEEEESCCCHHHHHHH T ss_pred CHHHHHHHHHHHHHHH----HHHHHHHHHHHCCCCCCEEEEECCCHHCHHHHHHHHHHH---CCEEEECCCCCHHHHHHH T ss_conf 9899999999968999----999999999864989877999897034789999999997---992695698856899999 Q ss_pred HHHHHHHHH Q ss_conf 999999999 Q gi|254781038|r 318 MIAWAALER 326 (363) Q Consensus 318 MIA~ag~~~ 326 (363) |+|..|.-. T Consensus 444 ~lA~~~~G~ 452 (510) T 2p3r_A 444 YLAGLAVGF 452 (510) T ss_dssp HHHHHHHTS T ss_pred HHHHHHCCC T ss_conf 999997288 No 27 >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, structural genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* Probab=96.28 E-value=0.018 Score=35.63 Aligned_cols=84 Identities=14% Similarity=0.209 Sum_probs=55.4 Q ss_pred CCCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 88846887502602207788733888841898873113346212187145599999999699999999998389822453 Q gi|254781038|r 3 KIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMD 82 (363) Q Consensus 3 ~~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id 82 (363) -|+++|||||-..-.+-++++ |.++++++.........+.+ .|.+ |.=....-+.+...+++++++++++..+|. T Consensus 3 ~M~kyvlgIDiGTss~Ka~l~---d~~g~i~~~~~~~~~~~~~~-~g~~-Eqd~~~~~~~~~~~i~~~~~~~~~~~~~I~ 77 (501) T 3g25_A 3 AMEKYILSIDQGTTSSRAILF---NQKGEIAGVAQREFKQYFPQ-SGWV-EHDANEIWTSVLAVMTEVINENDVRADQIA 77 (501) T ss_dssp CCCCEEEEEEECSSEEEEEEE---CTTSCEEEEEEEECCCBCSS-TTCC-EECHHHHHHHHHHHHHHHHHTTTCCGGGEE T ss_pred CCCCEEEEEECCCCCEEEEEE---CCCCCEEEEEEECCCCCCCC-CCCE-EECHHHHHHHHHHHHHHHHHHCCCCHHHEE T ss_conf 727279999831103100078---59998999999727713589-9808-889999999999999999987599965578 Q ss_pred EEEEC-CCCC Q ss_conf 68740-6643 Q gi|254781038|r 83 SIAVT-AGPG 91 (363) Q Consensus 83 ~Iavt-~gPG 91 (363) +|++| .+.| T Consensus 78 aIgis~~~~~ 87 (501) T 3g25_A 78 GIGITNQRET 87 (501) T ss_dssp EEEEEECSSC T ss_pred EEEEECCCCC T ss_conf 9999778798 No 28 >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* Probab=96.23 E-value=0.074 Score=31.39 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=47.9 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCH-HHCCCHHH Q ss_conf 06889999999999999999999999987621445523654133458799999999999868988996287-88772589 Q gi|254781038|r 239 DIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPA-RLCTDNAV 317 (363) Q Consensus 239 ~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~-~~ctDNAa 317 (363) +..++..++.+.++-.+.. .++..++. ...+..|.++||.+.|..+++.+.++. |.++..++. +-..=-|| T Consensus 364 ~~~~~~rAvlEgia~~~~~----~~~~l~~~-~~~~~~I~~~GG~a~s~~~~Qi~Adv~---g~pV~~~~~~e~~alGaA 435 (504) T 3ll3_A 364 QKPEMARAVIEGIIFNLYD----AASNLIKN-TKKPVAINATGGFLKSDFVRQLCANIF---NVPIVTMKEQQSGTLAAM 435 (504) T ss_dssp CHHHHHHHHHHHHHHHHHH----HHHHHHTT-SCCCSEEEEESGGGCSHHHHHHHHHHH---TSCEEEESCSCHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHH----HHHHHHHC-CCCCCEEEEECCCHHHHHHHHHHHHHH---CCEEEECCCCCHHHHHHH T ss_conf 7689999999999999999----99999973-899748999794224699999999988---990796788847999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254781038|r 318 MIAWAA 323 (363) Q Consensus 318 MIA~ag 323 (363) |+|..| T Consensus 436 ~lA~~a 441 (504) T 3ll3_A 436 FLARQA 441 (504) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999997 No 29 >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* Probab=96.06 E-value=0.089 Score=30.85 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=47.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCH-HHCCCHH Q ss_conf 0688999999999999999999999998762144-5523654133458799999999999868988996287-8877258 Q gi|254781038|r 239 DIADICASFQVTVVRILQARLKQGFLLFRKAFPH-KQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPA-RLCTDNA 316 (363) Q Consensus 239 ~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~-~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~-~~ctDNA 316 (363) +..++..++.+.++-.+...++ .+++.... ..+.+.++||-+.|..+++.+.+.. |.++..+.. +-+.=-| T Consensus 376 ~~~~l~rav~Egia~~~~~~~~----~l~~~~G~~~~~~i~~~GGgs~s~~~~Qi~Adv~---g~pV~~~~~~e~~alGa 448 (503) T 2w40_A 376 ERSHIVRALLEGIAFQLNEIVD----SLTSDMGIEMLHVLRCDGGMTKNKPFMQFNSDII---NTKIEVSKYKEVTSLGA 448 (503) T ss_dssp CHHHHHHHHHHHHHHHHHHHHH----HHHHHHTCSCCSCEEEESGGGGCHHHHHHHHHHH---TSCEEEESCSCHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH---CCEEEECCCCCHHHHHH T ss_conf 9999999889899999999999----9999729897608999686310999999999988---99079579885699999 Q ss_pred HHHHHHH Q ss_conf 9999999 Q gi|254781038|r 317 VMIAWAA 323 (363) Q Consensus 317 aMIA~ag 323 (363) ||+|..| T Consensus 449 A~lA~~a 455 (503) T 2w40_A 449 AVLAGLE 455 (503) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999998 No 30 >2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 Probab=95.92 E-value=0.1 Score=30.43 Aligned_cols=132 Identities=16% Similarity=0.134 Sum_probs=74.0 Q ss_pred CCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE Q ss_conf 88468875026022077887338888418988731133462121871455999999996999999999983898224536 Q gi|254781038|r 4 IKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDS 83 (363) Q Consensus 4 ~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~ 83 (363) ..|+ ||||-=.-.+-++++ |.+++|+....... |+....+-.+.+..++++++.+.+ .+.. T Consensus 23 ~~~y-lGiDiGGT~i~~al~---d~~G~il~~~~~~t-----------~~~~~~~~l~~i~~~i~~~~~~~~----~~~~ 83 (327) T 2ap1_A 23 NAMY-YGFDIGGTKIALGVF---DSTRRLQWEKRVPT-----------PHTSYSAFLDAVCELVEEADQRFG----VKGS 83 (327) T ss_dssp CCEE-EEEEECSSEEEEEEE---ETTCCEEEEEEEEC-----------CCSCHHHHHHHHHHHHHHHHHHHT----SCCE T ss_pred CCEE-EEEEECCCEEEEEEE---CCCCCEEEEEEEEC-----------CCCCHHHHHHHHHHHHHHHHHHCC----CCCE T ss_conf 9579-999967224999999---19998999999869-----------999999999999999999988638----8728 Q ss_pred EEECCCC------CH--HHH--HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCC--CCCEEEEEECCCEEEEE Q ss_conf 8740664------30--125--677999999988751486433303677653013225679--98439997068747999 Q gi|254781038|r 84 IAVTAGP------GL--MGG--LIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIA--FPYLVLLVSGGHTQILL 151 (363) Q Consensus 84 Iavt~gP------G~--~~~--L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~--~PfL~LlvSGGhT~l~~ 151 (363) |+++... |. .+. -.-+.....-|...+++|++-.|+..+-++.-.+..... .-|+.+.++.|=---+. T Consensus 84 igi~~~G~vd~~~g~i~~~~~~~~~~~~l~~~L~~~~~~~v~~~nD~~~~Al~e~~~g~~~~~~~~~~~~ig~gig~g~~ 163 (327) T 2ap1_A 84 VGIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDVRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLV 163 (327) T ss_dssp EEEEESSBSCCTTSCCBCTTCTTTTTSCHHHHHHHHHTSCEEEEEHHHHHHHHHHTSTTGGGCSEEEEEEESSSEEEEEE T ss_pred EEEEECCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEE T ss_conf 99997886546786483466733246609999999879987982475187888876177652351899996464221377 Q ss_pred ECC Q ss_conf 837 Q gi|254781038|r 152 VRD 154 (363) Q Consensus 152 ~~~ 154 (363) .++ T Consensus 164 ~~g 166 (327) T 2ap1_A 164 LNG 166 (327) T ss_dssp ETT T ss_pred ECC T ss_conf 457 No 31 >3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis} Probab=95.76 E-value=0.12 Score=30.00 Aligned_cols=108 Identities=13% Similarity=0.088 Sum_probs=65.1 Q ss_pred CCCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 88846887502602207788733888841898873113346212187145599999999699999999998389822453 Q gi|254781038|r 3 KIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMD 82 (363) Q Consensus 3 ~~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id 82 (363) ..+++|||||=--..+.+++++ .+++++......... + ...+..+.+...+++. ......++. T Consensus 6 ~d~~~vlgiDIGGT~i~~al~d---~~g~i~~~~~~pt~~-~----------~~~~~l~~i~~~i~~~---~~~~~~~i~ 68 (366) T 3mcp_A 6 NDNRIVMTLDAGGTNFVFSAIQ---GGKEIADPVVLPACA-D----------CLDKCLGNLVEGFKAI---QAGLPEAPV 68 (366) T ss_dssp TCCCEEEEEECSSSEEEEEEEE---TTEECSCCEEEECCT-T----------CHHHHHHHHHHHHHHH---HTTCSSCCC T ss_pred CCCCEEEEEEECCCEEEEEEEE---CCCCEEEEEEECCCC-C----------CHHHHHHHHHHHHHHH---HHHCCCCCC T ss_conf 8998899999873149999990---899599999975898-8----------9999999999999999---854789876 Q ss_pred EEEECC-CC-----C------HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC Q ss_conf 687406-64-----3------012567799999998875148643330367765301 Q gi|254781038|r 83 SIAVTA-GP-----G------LMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTA 127 (363) Q Consensus 83 ~Iavt~-gP-----G------~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~ 127 (363) +|+++. || | .++...-+...++.|...+++|++=.|...+-++.- T Consensus 69 gIGia~pG~vd~~~G~v~~~~nl~~~~~~~~l~~~l~~~~g~pV~i~NDa~aaalgE 125 (366) T 3mcp_A 69 AISFAFPGPADYQAGIIGDLPNFPSFRGGVALGPFLEDIFGIPVFINNDGSLFAYGE 125 (366) T ss_dssp EEEEECCSSEETTTTEECCCTTCGGGTTCBCHHHHHHHHHCSCEEEECHHHHHHHHH T ss_pred EEEEEECCCEECCCCEEEECCCCHHHHCCCCHHHHHHHHHCCCEEECCCHHHHHHHH T ss_conf 799992676868999898278733754597489999998788868617488999999 No 32 >1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6 Probab=95.64 E-value=0.11 Score=30.11 Aligned_cols=103 Identities=10% Similarity=0.143 Sum_probs=58.2 Q ss_pred EEEEEECCCHHHEEEEEECCCCCCEEEEE-EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE Q ss_conf 68875026022077887338888418988-73113346212187145599999999699999999998389822453687 Q gi|254781038|r 7 TVIGIETSCDETAVAVVRRKDSHGEILAE-AVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIA 85 (363) Q Consensus 7 ~ILgIETScd~tsvaiv~~~~~~~~il~~-~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Ia 85 (363) +|||||-|-..|+.||++.++...+++.. .+.+..+.+ . +....|-.-+.+.+++.+.+.--+..+. T Consensus 2 iILGiDPgl~~tG~avid~~~~~~~~i~~g~i~t~~~~~----------~--~Rl~~I~~~l~~ii~~~~pd~vaiE~~f 69 (158) T 1hjr_A 2 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDL----------P--SRLKLIYAGVTEIITQFQPDYFAIEQVF 69 (158) T ss_dssp EEEEEECCSSEEEEEEEEEETTEEEEEEEEEEECCCSCH----------H--HHHHHHHHHHHHHHHHHCCSEEEEEECC T ss_pred EEEEECCCCCCEEEEEEEEECCEEEEEEEEEEECCCCCH----------H--HHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 899984355856899999539878999866897799887----------9--9999999999999971397353698988 Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH Q ss_conf 406643012567799999998875148643330367 Q gi|254781038|r 86 VTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLE 121 (363) Q Consensus 86 vt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~ 121 (363) +...+...-.+.--.......++..++|++.+.-.+ T Consensus 70 ~~~n~~sa~~l~~a~G~i~~~~~~~~i~i~~~~P~~ 105 (158) T 1hjr_A 70 MAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQ 105 (158) T ss_dssp CCCCTTTHHHHHHHHHHHHHHHHTTTCCEEEEEHHH T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH T ss_conf 623888999999999999999998599601368899 No 33 >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinase-HSP70- actin superfamily, L-rhamnulose kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* Probab=95.54 E-value=0.11 Score=30.24 Aligned_cols=81 Identities=17% Similarity=0.235 Sum_probs=52.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHH Q ss_conf 21068899999999999999999999999876214455236541334587999999999998689889962878877258 Q gi|254781038|r 237 KQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNA 316 (363) Q Consensus 237 ~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNA 316 (363) ...+.++..++.+.+.-.+ +..++..++.....++.|.++||.+-|..+++.+.+.. |.+++.++.+-+.=-| T Consensus 361 ~~~~~~l~ra~lEgia~~~----~~~~~~l~~~~g~~~~~I~~~GG~sks~~~~Qi~Adv~---g~~V~~~~~e~s~lGa 433 (489) T 2uyt_A 361 PESDAELARCIFDSLALLY----ADVLHELAQLRGEDFSQLHIVGGGCQNTLLNQLCADAC---GIRVIAGPVEASTLGN 433 (489) T ss_dssp CCSHHHHHHHHHHHHHHHH----HHHHHHHHHHHTCCCSEEEEESGGGGCHHHHHHHHHHH---TSEEEECCTTHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHH----HHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHH---CCEEEECCCCHHHHHH T ss_conf 9999999886899999999----99999999961979888999877565789999999988---9926967964789999 Q ss_pred HHHHHHHH Q ss_conf 99999999 Q gi|254781038|r 317 VMIAWAAL 324 (363) Q Consensus 317 aMIA~ag~ 324 (363) ||+|+.+. T Consensus 434 a~~A~~a~ 441 (489) T 2uyt_A 434 IGIQLMTL 441 (489) T ss_dssp HHHHHHHT T ss_pred HHHHHHHH T ss_conf 99999980 No 34 >3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3lm9_A* Probab=95.25 E-value=0.18 Score=28.81 Aligned_cols=125 Identities=15% Similarity=0.139 Sum_probs=72.2 Q ss_pred CCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE Q ss_conf 84688750260220778873388884189887311334621218714559999999969999999999838982245368 Q gi|254781038|r 5 KKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSI 84 (363) Q Consensus 5 ~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~I 84 (363) +.+++|||=--..+.++++ |.+++|+........ .|+ +..+.+ .+.+++. ++.+| T Consensus 2 ~~l~~GiDiGgT~i~~~l~---d~~G~il~~~~~pt~---------~~~----~~~~~i----~~~~~~~-----~i~~i 56 (302) T 3epq_A 2 NAMLGGIEAGGTXFVCAVG---REDGTIIDRIEFPTX---------MPD----ETIEXV----IQYFSQF-----SLQAI 56 (302) T ss_dssp -CCEEEEEECSSEEEEEEE---CTTSCEEEEEEEECC---------CHH----HHHHHH----HHHHTTS-----CCSEE T ss_pred CCEEEEEEECCCEEEEEEE---CCCCCEEEEEEECCC---------CHH----HHHHHH----HHHHHHH-----CCCEE T ss_conf 9779999967747999999---699939999996689---------979----999999----9999872-----57654 Q ss_pred EECC-CCCHH------HH--------HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC--CCCCCEEEEEECCCE Q ss_conf 7406-64301------25--------6779999999887514864333036776530132256--799843999706874 Q gi|254781038|r 85 AVTA-GPGLM------GG--------LIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDD--IAFPYLVLLVSGGHT 147 (363) Q Consensus 85 avt~-gPG~~------~~--------L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~--~~~PfL~LlvSGGhT 147 (363) +++. ||.-. .+ =..+....+.|...+++|++=.|...+-++.-.+... -.-.|+.+.++=|-- T Consensus 57 gi~~pG~vd~~~~~~~~g~i~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~aaal~E~~~G~~~~~~~~~~l~~gtGiG 136 (302) T 3epq_A 57 GIGSFGPVDNDXTSQTYGTITATPXAGWRHYPFLQTVXNEMXIPVGFSTDVNAAALGEFLFGEAXGLDSCLYITIGTGIG 136 (302) T ss_dssp EEEECSSEECCTTSTTTTEECCCSSTTTBTCCHHHHHHHHHCSCEEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSSEE T ss_pred EEEEEEEECCCCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEEEEECCCEE T ss_conf 79111422356664101279348987747885588886424535899745889999999726667997089999389536 Q ss_pred EEEEECC Q ss_conf 7999837 Q gi|254781038|r 148 QILLVRD 154 (363) Q Consensus 148 ~l~~~~~ 154 (363) -=+..++ T Consensus 137 ~gii~~g 143 (302) T 3epq_A 137 AGAIVEG 143 (302) T ss_dssp EEEEETT T ss_pred EEEEECC T ss_conf 7786579 No 35 >3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12} Probab=95.17 E-value=0.19 Score=28.66 Aligned_cols=137 Identities=13% Similarity=0.120 Sum_probs=77.6 Q ss_pred CCCCCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 98888468875026022077887338888418988731133462121871455999999996999999999983898224 Q gi|254781038|r 1 MSKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISD 80 (363) Q Consensus 1 m~~~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~ 80 (363) |.+....|+|||=....+-++++ |.+++++........... .+ .-.+.+..++++.+++.+ .+ T Consensus 2 ~~~~~~~v~GIDiGgt~i~~~l~---d~~g~i~~~~~~~~~~~~------~~-----~~~~~i~~~i~~~~~~~~---~~ 64 (310) T 3htv_A 2 MQKQHNVVAGVDMGATHIRFCLR---TAEGETLHCEKKRTAEVI------AP-----GLVSGIGEMIDEQLRRFN---AR 64 (310) T ss_dssp --CCEEEEEEEEECSSEEEEEEE---ETTSCEEEEEEEEHHHHH------TT-----CHHHHHHHHHHHHHHHHT---EE T ss_pred CCCCCCEEEEEEECCCEEEEEEE---CCCCCEEEEEEECCCCCC------HH-----HHHHHHHHHHHHHHHHCC---CC T ss_conf 98889899999976667999999---299989999996188878------89-----999999999999998759---97 Q ss_pred CCEEEECC-CC-----C--H-HHHH----HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCC-CCCEEEEEECCC Q ss_conf 53687406-64-----3--0-1256----77999999988751486433303677653013225679-984399970687 Q gi|254781038|r 81 MDSIAVTA-GP-----G--L-MGGL----IVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIA-FPYLVLLVSGGH 146 (363) Q Consensus 81 id~Iavt~-gP-----G--~-~~~L----~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~-~PfL~LlvSGGh 146 (363) +.+|+++. || | . .+.| ..+...++.|...+++|++=.|...+=++.-.+..... -.|+.+.++-|= T Consensus 65 i~gIgia~pG~vd~~~g~v~~~~~~~~~~~~~~~l~~~l~~~~~~pv~i~ND~~aaa~~e~~~~~~~~~~~~~i~~gtGi 144 (310) T 3htv_A 65 CHGLVMGFPALVSKDKRTIISTPNLPLTAADLYDLADKLENTLNCPVEFSRDVNLQLSWDVVENRLTQQLVLAAYLGTGM 144 (310) T ss_dssp EEEEEEEESSCBCTTSSCBCSCCSSSCCHHHHTTHHHHHHHHHTSCEEEEEHHHHHHHHHHHHTTCTTSCEEEEEESSSE T ss_pred CCEEEEEECCEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCCCEEEEEEECCCC T ss_conf 30799982630867998499568778644447767999878629857995537777776654034546659999846713 Q ss_pred EEEEEECC Q ss_conf 47999837 Q gi|254781038|r 147 TQILLVRD 154 (363) Q Consensus 147 T~l~~~~~ 154 (363) -.=+..++ T Consensus 145 G~gii~~g 152 (310) T 3htv_A 145 GFAVWMNG 152 (310) T ss_dssp EEEEEETT T ss_pred CCCCCCCC T ss_conf 55413478 No 36 >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Probab=94.40 E-value=0.28 Score=27.40 Aligned_cols=76 Identities=13% Similarity=0.098 Sum_probs=50.0 Q ss_pred EEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE Q ss_conf 68875026022077887338888418988731133462121871455999999996999999999983898224536874 Q gi|254781038|r 7 TVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAV 86 (363) Q Consensus 7 ~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iav 86 (363) ++||||-..--+-++++ |.++++++.......... ...|-. |.-....-+.+...+++++++++++..+|.+|++ T Consensus 3 y~lgIDiGTts~Ka~l~---d~~g~~~~~~~~~~~~~~-~~~g~~-eqd~~~~w~~~~~~~~~~l~~~~~~~~~I~aIg~ 77 (495) T 2dpn_A 3 FLLALDQGTTSSRAILF---TLEGRPVAVAKREFRQLY-PKPGWV-EHDPLEIWETTLWAAREVLRRAGAEAGEVLALGI 77 (495) T ss_dssp CEEEEEECSSEEEEEEE---CTTSCEEEEEEEECCEEC-SSTTCC-EECHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEE T ss_pred EEEEEECCCCCEEEEEE---ECCCCEEEEEEEECCEEC-CCCCCE-EECHHHHHHHHHHHHHHHHHHCCCCHHCEEEEEE T ss_conf 99999742323344488---088999999997456045-899938-9999999999999999999974998421689999 Q ss_pred C Q ss_conf 0 Q gi|254781038|r 87 T 87 (363) Q Consensus 87 t 87 (363) | T Consensus 78 s 78 (495) T 2dpn_A 78 T 78 (495) T ss_dssp E T ss_pred E T ss_conf 8 No 37 >3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} Probab=94.22 E-value=0.12 Score=30.03 Aligned_cols=83 Identities=18% Similarity=0.192 Sum_probs=50.6 Q ss_pred CCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCC----CCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHC Q ss_conf 884688750260220778873388884189887311334----6212187145-----5999999996999999999983 Q gi|254781038|r 4 IKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQID----QHGHYGGVVP-----EVAARAHVDVLDILIKQTLLRA 74 (363) Q Consensus 4 ~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~----~~~~~GGv~P-----~~A~~~H~~~l~~li~~~l~~a 74 (363) |+++|||||-..-.+-++|++. +++++++........ .+....++.+ |.-...-.+.+...++++++++ T Consensus 3 M~ky~LgIDiGTts~Ka~l~D~--~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~Eqd~~~~~~a~~~~i~~~l~~~ 80 (572) T 3jvp_A 3 LTKYTIGVDYGTESGRAVLIDL--SNGQELADHVTPYRHGVIDQYLPNTNIKLGHEWALQHPLDYVEVLTTSVPAVMKES 80 (572) T ss_dssp --CEEEEEEECSSEEEEEEEET--TTCCEEEEEEEECTTCCBSSBSTTSCCBCCTTCCEECHHHHHHHHTTHHHHHHHC- T ss_pred CCEEEEEEEECCCCEEEEEEEC--CCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHC T ss_conf 7717999972465528899988--99909999998602343222479888678988277789999999999999999984 Q ss_pred CCCCCCCCEEEECC Q ss_conf 89822453687406 Q gi|254781038|r 75 NMQISDMDSIAVTA 88 (363) Q Consensus 75 ~~~~~~id~Iavt~ 88 (363) +++..+|.+|++|. T Consensus 81 ~~~~~~I~aIgis~ 94 (572) T 3jvp_A 81 GVDADDVIGIGVDF 94 (572) T ss_dssp --CCSCEEEEEEEE T ss_pred CCCHHHEEEEEEEC T ss_conf 98988848999856 No 38 >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, structural genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* Probab=94.15 E-value=0.32 Score=27.01 Aligned_cols=135 Identities=16% Similarity=0.123 Sum_probs=71.6 Q ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHC--CCCCCCCCC------HHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC Q ss_conf 002388889885288761035566655405--733345861------110688754221024589999998511201210 Q gi|254781038|r 168 ALGECFDKIAKSLGLPYPGGVEIEKAALMG--DGKRFKFPC------PLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQD 239 (363) Q Consensus 168 a~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g--~~~~~~~P~------p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~ 239 (363) ..|.+++-..+.+...-.. ...+..+... ...-+-+|. |..+ .+..=+|.||.. ..+ T Consensus 310 ~~G~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~gl~~~P~~~G~r~P~~d-~~~~g~~~Gl~~-------------~~~ 374 (501) T 3g25_A 310 VSGSAIQWLRDGLRMINSA-PQSESYATRVDSTEGVYVVPAFVGLGTPYWD-SEARGAIFGLTR-------------GTE 374 (501) T ss_dssp CSTHHHHHHHHTSCCCSSG-GGHHHHHTTSSCCTTCEEECCTTCBCTTTCB-TTCCEEEEEECT-------------TCC T ss_pred HHHHHHHHHHHHCCCCCHH-HHHHHHHHHCCCCCCEEECCCCCCCCCCCCC-CCCCEEEECCCC-------------CCC T ss_conf 9899999999750123114-5679987523456844875777777898889-777647962687-------------631 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCH-HHCCCHHHH Q ss_conf 6889999999999999999999999987621445523654133458799999999999868988996287-887725899 Q gi|254781038|r 240 IADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPA-RLCTDNAVM 318 (363) Q Consensus 240 ~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~-~~ctDNAaM 318 (363) ..++..++.+.++-.+. +.++..++.....++.|.++||.+.|..+++.+.+.. |.++..++. +-+.=-||| T Consensus 375 ~~~l~ra~~Egia~~~~----~~~~~~~~~~g~~~~~i~~~GG~s~s~~~~Qi~Adv~---g~pV~~~~~~ea~alGaA~ 447 (501) T 3g25_A 375 KEHFIRATLESLCYQTR----DVMEAMSKDSGIDVQSLRVDGGAVKNNFIMQFQADIV---NTSVERPEIQETTALGAAF 447 (501) T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHSSCCCSEEEEESGGGGCHHHHHHHHHHH---TSEEEEESCCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHCCCCCCEEEEECCCHHCHHHHHHHHHHH---CCEEEECCCCCHHHHHHHH T ss_conf 37999999986689999----9999999863989888999896023899999999997---9857967988568999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254781038|r 319 IAWAAL 324 (363) Q Consensus 319 IA~ag~ 324 (363) +|..|. T Consensus 448 la~~a~ 453 (501) T 3g25_A 448 LAGLAV 453 (501) T ss_dssp HHHHHT T ss_pred HHHHHC T ss_conf 999974 No 39 >3khy_A Propionate kinase; csgid, IDP01739, ATP-binding, nucleotide-binding, transferase, structural genomics; 1.98A {Francisella tularensis subsp} Probab=91.98 E-value=0.66 Score=24.85 Aligned_cols=52 Identities=25% Similarity=0.388 Sum_probs=35.4 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHH-HHHHHHHHHHHHHHHCCCEE Q ss_conf 999999999999998762144552365413345-87999999999998689889 Q gi|254781038|r 252 VRILQARLKQGFLLFRKAFPHKQAVLVVSGGVA-SNHFIRASLIDLCVLHGFRF 304 (363) Q Consensus 252 ~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVa-aN~~LR~~l~~~~~~~~~~~ 304 (363) ++..+-++.+.+-.+-... .++..+|+.||++ ...++|+++.+-++-.|+++ T Consensus 293 ~d~~~yqi~k~IGa~aa~l-ggvDaIVfTGGIgens~~vR~~i~~~l~~lGi~l 345 (384) T 3khy_A 293 IEIFSHRVAKFVASYMIYF-NKLDALVFTGGIGENAANIRKNIISKLANLGFMI 345 (384) T ss_dssp HHHHHHHHHHHHHHHGGGC-SSCCEEEEEHHHHHHCHHHHHHHHHHTGGGTCCB T ss_pred HHHHHHHHHHHHHHHHHHH-CCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEE T ss_conf 9999999999999999973-8999999867103588999999984304418066 No 40 >1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.30A {Porphyromonas gingivalis W83} SCOP: c.55.1.5 c.55.1.5 Probab=91.75 E-value=0.7 Score=24.68 Aligned_cols=129 Identities=10% Similarity=0.053 Sum_probs=59.4 Q ss_pred EEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCEEEE Q ss_conf 8875026022077887338888418988731133462121871455999-999996999999999983898224536874 Q gi|254781038|r 8 VIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAA-RAHVDVLDILIKQTLLRANMQISDMDSIAV 86 (363) Q Consensus 8 ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~-~~H~~~l~~li~~~l~~a~~~~~~id~Iav 86 (363) ||++|.=.-.|.+++++ ++++++..+. ||..|.... .+=.++|...+.+++.+++.+ +..+.+ T Consensus 2 iL~vDgGGTKT~~~l~~----~g~~i~~~~~---------~~~N~~~~~~~~~~~~i~~~i~~~l~~~~~~---~~~i~~ 65 (291) T 1zbs_A 2 ILIGDSGSTKTDWCIAK----EGKSLGRFQT---------SGINPFQQDRNEIDTALRSEVLPAIGQKASS---IRAVYF 65 (291) T ss_dssp EEEEEECSSEEEEEEEE----TTEEEEEEEE---------ECCCTTTSCHHHHHHHHTTTTHHHHTTSTTT---CCEEEE T ss_pred EEEEEECHHHEEEEEEC----CCCEEEEEEC---------CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC---CCEEEE T ss_conf 89999363257899998----9978999974---------8888201799999999999999998636888---416999 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH--CCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEE Q ss_conf 066430125677999999988751--48643330367765301322567998439997068747999837564300 Q gi|254781038|r 87 TAGPGLMGGLIVGLMTAKAISYVS--HKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDR 160 (363) Q Consensus 87 t~gPG~~~~L~vG~~~Ak~la~~~--~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~i 160 (363) . +-|..+.-+ -...+.+...+ ..++.=+|-.++-+.++.-. .| =.++++|==+..+..+..+.... T Consensus 66 ~-~aG~~~~~~--~~~~~~l~~~~~~~~~v~V~nD~~~a~~aa~~~----~~-GivvIaGTGSi~~~~~~~g~~~r 133 (291) T 1zbs_A 66 Y-GAGCTPAKA--PMLNEALDSMLPHCDRIEVAGDMLGAARALCGD----SE-GIACILGTGSNSCLFDGREIKAN 133 (291) T ss_dssp E-ETTCCTTTH--HHHHHHHHHHSTTCSEEEEECHHHHHHHHHTTT----SC-EEEEEESSSEEEEEECSSSEEEE T ss_pred E-EECCCHHHH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCC----CC-EEEEECCCCEEEEEEECCCCEEE T ss_conf 9-833753331--999999998643477299954869999973368----96-39998589826999978987788 No 41 >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Probab=90.15 E-value=0.97 Score=23.69 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=49.4 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCH-HHCCCHHH Q ss_conf 06889999999999999999999999987621445523654133458799999999999868988996287-88772589 Q gi|254781038|r 239 DIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPA-RLCTDNAV 317 (363) Q Consensus 239 ~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~-~~ctDNAa 317 (363) .+.++..++.+.+.-.+. ..++.++. ....++.|+++||.+.|..+++.+.++. |.++..+.. +.+.=-|| T Consensus 395 ~~~~l~rA~lEgia~~~~----~~~~~~~~-~g~~~~~I~~~GG~a~n~~~~Q~~Adv~---g~~V~~~~~~e~~a~GaA 466 (515) T 3i8b_A 395 TRENLARAFVEGLLCSQR----DCLELIRS-LGASITRILLIGGGAKSEAIRTLAPSIL---GMDVTRPATDEYVAIGAA 466 (515) T ss_dssp SHHHHHHHHHHHHHHHHH----HHHHHHHH-TTCCCCEEEEESGGGGCHHHHHHHHHHH---TSCEEEECCCCHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHH----HHHHHHHH-CCCCCCEEEEECCHHHCHHHHHHHHHHH---CCEEEECCCCCHHHHHHH T ss_conf 378887899999999999----99999997-0989787999895220799999999998---991696798857999999 Q ss_pred HHHHHHHH Q ss_conf 99999999 Q gi|254781038|r 318 MIAWAALE 325 (363) Q Consensus 318 MIA~ag~~ 325 (363) |+|..+.- T Consensus 467 ~lA~~~~g 474 (515) T 3i8b_A 467 RQAAWVLS 474 (515) T ss_dssp HHHHHHHH T ss_pred HHHHHHHC T ss_conf 99999847 No 42 >1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A* Probab=90.09 E-value=0.99 Score=23.65 Aligned_cols=284 Identities=14% Similarity=0.190 Sum_probs=129.3 Q ss_pred CEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE Q ss_conf 468875026022077887338888418988731133-4621218714559999999969999999999838982245368 Q gi|254781038|r 6 KTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQI-DQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSI 84 (363) Q Consensus 6 ~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~-~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~I 84 (363) |-||.|-.=.-.|-+++++. + +.+.....+.. +.-.++.-+.. +.+....++.+.|.+.++.+..++++ T Consensus 2 ~kILvIN~GSSS~K~alf~~---~-~~~~~~~i~h~~~~~~~~~~~~d------~~~~r~~~i~~~L~~~g~~l~~v~~r 71 (381) T 1saz_A 2 FRILTINPGSTSTKLSIFED---E-RMVKMQNFSHSPDELGRFQKILD------QLEFREKIARQFVEETGYSLSSFSAF 71 (381) T ss_dssp CEEEEEEECSSEEEEEEEET---T-EEEEEEEEECCHHHHHTCSSGGG------GHHHHHHHHHHHHHTTTCCGGGCSEE T ss_pred CEEEEECCCCHHHEEEEEEC---C-CCEEECEEEECCHHHCCCCCCHH------HHHHHHHHHHHHHHHCCCCCCCCCEE T ss_conf 74999857817562378938---8-61234421432101044453010------58899999999998769983514779 Q ss_pred EECCC--CCHHH-HHHH--------------------HHHHHHHHHHHHCCCCCCC---HHHH----------------- Q ss_conf 74066--43012-5677--------------------9999999887514864333---0367----------------- Q gi|254781038|r 85 AVTAG--PGLMG-GLIV--------------------GLMTAKAISYVSHKPFYAI---NHLE----------------- 121 (363) Q Consensus 85 avt~g--PG~~~-~L~v--------------------G~~~Ak~la~~~~~Pli~V---nH~~----------------- 121 (363) .|--| +-..+ ..+| +...|..++...++|.+-+ -|.+ T Consensus 72 vv~GG~~~~~~~g~~~v~~~~l~~l~~~apl~~~~nl~~i~a~~~~~~~~~p~~vfDtafh~~mp~~Ar~yglP~~~Rry 151 (381) T 1saz_A 72 VSRGGLLDPIPGGVYLVDGLMIKTLKSGKNGEHASNLGAIIAHRFSSETGVPAYVVDPVVVDEMEDVARVSGHPNYQRKS 151 (381) T ss_dssp EEECCSCSCBCSSEEECCHHHHHHHHHTTTCCCTTHHHHHHHHHHHHHHCCCEEEESCTTBCCCCGGGTBCSSTTCBCCC T ss_pred EEECCCCCCCCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHCCCCCEEEEE T ss_conf 98089876506971876799999987467877701489999999857899975886881313586888866798756765 Q ss_pred -----HHHHCCC-----CCCCC-CCCCEEEEEECCCEEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHCCCCC------ Q ss_conf -----7653013-----22567-998439997068747999837564300022336300238888988528876------ Q gi|254781038|r 122 -----GHILTAR-----LTDDI-AFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAKSLGLPY------ 184 (363) Q Consensus 122 -----aH~~~~~-----l~~~~-~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~y------ 184 (363) .|-+.++ +..+. +.-+++.|+-||-|.-..-++ .++|-+-|=-- =|+.. T Consensus 152 gFHGlS~~~va~~~a~~lgk~~~~~nlIv~HLG~G~Si~Ai~~G--------ksvDtsmG~tp------eGl~m~tRsG~ 217 (381) T 1saz_A 152 IFHALNQKTVAKEVARMMNKRYEEMNLVVAHMGGGISIAAHRKG--------RVIDVNNALDG------DGPFTPERSGT 217 (381) T ss_dssp CSCHHHHHHHHHHHHHHTTCCGGGCEEEEEEESSSEEEEEEETT--------EEEEECCGGGT------CSSCCSSCCCS T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHCEEEEEEECCCCEEEHHHCC--------EEEECCCCCCC------CCCCCCCCCCC T ss_conf 44354399999999999688978871899995698355733288--------61560887688------87868876789 Q ss_pred -CHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf -103556665540573334586111068875422102458999999851-120121068899999999999999999999 Q gi|254781038|r 185 -PGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAF-DVLEKQDIADICASFQVTVVRILQARLKQG 262 (363) Q Consensus 185 -PgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~-~~~~~~~~~diaasfQ~~i~~~L~~k~~~a 262 (363) |.|..+. +.+++.-..-.+..-+.++.++ ++.|| -+.+ |-+++. +..+ +.+.+ +++..+.++.+. T Consensus 218 ldp~~l~~-l~~~~~~s~~e~~~~Ln~~sGL-~g~sG-tsD~-Rev~~~~~~Gd--~~A~L-------A~d~~~y~i~K~ 284 (381) T 1saz_A 218 LPLTQLVD-LCFSGKFTYEEMKKRIVGNGGL-VAYLG-TSDA-REVVRRIKQGD--EWAKR-------VYRAMAYQIAKW 284 (381) T ss_dssp CCHHHHHH-HHTSSCCCTTGGGSTTTTSCTH-HHHHS-CCCH-HHHHHHHHTTC--HHHHH-------HHHHHHHHHHHH T ss_pred CCHHHHHH-HHHHCCCCHHHHHHHHHCCCCC-CCCCC-CCCH-HHHHHHHHCCC--HHHHH-------HHHHHHHHHHHH T ss_conf 88799999-9986699999999998356662-21168-8759-99999988879--98999-------999999999999 Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHH-HHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHHHHHHCCC Q ss_conf 9998762144552365413345879-99999999998689889962878877258999999999998499 Q gi|254781038|r 263 FLLFRKAFPHKQAVLVVSGGVASNH-FIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAWAALERMEAGL 331 (363) Q Consensus 263 ~~~~~~~~~~~~~~lvv~GGVaaN~-~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ag~~~~~~g~ 331 (363) +-.+-.....++..+|+.||++-|+ ++|+++.+.++-.+.=.++| -+|--.+||.-++. ...|. T Consensus 285 IGa~aa~L~G~vDaIVfTGGIgens~~lr~~I~~~l~~lgpV~v~P----g~~E~~alA~~~lr-vl~g~ 349 (381) T 1saz_A 285 IGKMAAVLKGEVDFIVLTGGLAHEKEFLVPWITKRVSFIAPVLVFP----GSNEEKALALSALR-VLRGE 349 (381) T ss_dssp HHHHHHHTTTCCSEEEEEEGGGGCTTTHHHHHHHHHTTTSCEEEEE----BCCHHHHHHHHHHH-HHTTS T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEC----CCCHHHHHHHHHHH-HHCCC T ss_conf 9999997299778899867021586999999997466403089977----97889999998999-86697 No 43 >1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Probab=88.89 E-value=1.2 Score=23.06 Aligned_cols=178 Identities=14% Similarity=0.051 Sum_probs=94.2 Q ss_pred HHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEECCCCCCCCHHHHHHH-HHHHCCCCCCHHHHHHHHHHHC-C Q ss_conf 7765301322567998439997068747999837564300022336300238888-9885288761035566655405-7 Q gi|254781038|r 121 EGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECFDK-IAKSLGLPYPGGVEIEKAALMG-D 198 (363) Q Consensus 121 ~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda~Ge~~DK-~ar~Lgl~yPgGp~ie~~A~~g-~ 198 (363) .+-.++.+..++.+++.+.+=+=||+|.+-+.+.-.... ....--.|+-||+ +++.|++++..- -|++-+.. . T Consensus 395 ~Aa~~~aLt~~e~~~gvaViDiGGGTTDvSI~~~g~~v~---s~vlalGGd~IT~dIa~~L~l~~~~~--AE~IK~~~g~ 469 (607) T 1nbw_A 395 NMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQIT---AVHLAGAGNMVSLLIKTELGLEDLSL--AEAIKKYPLA 469 (607) T ss_dssp HHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECSSSCEE---EEEEECCHHHHHHHHHHHHTCSCHHH--HHHHHHSCEE T ss_pred HHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCCEEE---EEEECCCCHHHHHHHHHHCCCCCHHH--HHHHHHHCCC T ss_conf 999966389988758649999589837999996997799---98764634545379986464544777--9999864476 Q ss_pred ----C--------CCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ----3--------3345861110688754221024589999998511201210688999999999999999999999998 Q gi|254781038|r 199 ----G--------KRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLF 266 (363) Q Consensus 199 ----~--------~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~ 266 (363) . ..-.+..++...-.....+.+... ..+...+....+++.-.+..+.+.+.....|++... T Consensus 470 a~~s~~~~~~e~~~v~~~ke~ls~ev~~rv~~~~~~~-------~v~~~~~isreeL~eiIr~rleeIf~~~i~RaL~~~ 542 (607) T 1nbw_A 470 KVESLFSIRHENGAVEFFREALSPAVFAKVVYIKEGE-------LVPIDNASPLEKIRLVRRQAKEKVFVTNCLRALRQV 542 (607) T ss_dssp EECSSSEEEETTSCEEECSSCCCGGGTTCEEEEETTE-------EEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHSSS T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC-------CCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 5369899999875665523336712201465421677-------877306876999999999999999999999999853 Q ss_pred HHHC-CCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHH Q ss_conf 7621-4455236541334587999999999998689889962878 Q gi|254781038|r 267 RKAF-PHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPAR 310 (363) Q Consensus 267 ~~~~-~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~ 310 (363) .... ...+..+|++||-|.-..|++.+.+.+...++.+--|..+ T Consensus 543 ~~~~~~~dI~gVVLVGGSS~lpgI~eLv~e~L~~~~V~vGrgni~ 587 (607) T 1nbw_A 543 SPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIR 587 (607) T ss_dssp STTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGG T ss_pred CCCCCCCCCCEEEEECHHHHHCCHHHHHHHHHCCCCEECCCCCCC T ss_conf 765550239949998935412059999999857997424777765 No 44 >1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10 Probab=88.73 E-value=1.2 Score=22.99 Aligned_cols=134 Identities=18% Similarity=0.209 Sum_probs=73.3 Q ss_pred CCCCCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 98888468875026022077887338888418988731133462121871455999999996999999999983898224 Q gi|254781038|r 1 MSKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISD 80 (363) Q Consensus 1 m~~~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~ 80 (363) ||+++..|||||=--..+.+++++.+ .++++.+......... -.|+ .=.+.+..++++...+ ...... T Consensus 7 ~~~~~~~viGiDiGGT~i~~~l~d~~--~~~i~~~~~~~~t~~~-----~~~~----~i~~~i~~~i~~l~~~-~~~~~~ 74 (267) T 1woq_A 7 KSHKNAPLIGIDIGGTGIKGGIVDLK--KGKLLGERFRVPTPQP-----ATPE----SVAEAVALVVAELSAR-PEAPAA 74 (267) T ss_dssp ----CCCEEEEEECSSEEEEEEEETT--TTEEEEEEEEEECCSS-----CCHH----HHHHHHHHHHHHHHTS-TTCCCT T ss_pred CCCCCCCEEEEEECCCEEEEEEEECC--CCEEEEEEEEECCCCC-----CCHH----HHHHHHHHHHHHHHHH-CCCCCC T ss_conf 64899989999987765999999899--9989999999678999-----9999----9999999999998750-267764 Q ss_pred CCEEEECCCCCHHH-----------HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCC-CC-C-CEEEEEECCC Q ss_conf 53687406643012-----------567799999998875148643330367765301322567-99-8-4399970687 Q gi|254781038|r 81 MDSIAVTAGPGLMG-----------GLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDI-AF-P-YLVLLVSGGH 146 (363) Q Consensus 81 id~Iavt~gPG~~~-----------~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~-~~-P-fL~LlvSGGh 146 (363) +.+|+++. ||..- .-.-+...++-|...+++|++=.|...+-++.-.+.... .. . ++.+.+++|- T Consensus 75 ~~gIGi~~-PG~vd~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pV~v~NDanaaAlaE~~~G~~~~~~~~~~~~~~gtGi 153 (267) T 1woq_A 75 GSPVGVTF-PGIIQHGVVHSAANVDKSWLNTDIDALLTARLGRPVEVINDADAAGLAEARYGAGAGVKGTVLVITLGTGI 153 (267) T ss_dssp TCCEEEEE-SSCEETTEECCCTTSCGGGTTCBHHHHHHHHHTSCEEEEEHHHHHHHHHHHHSTTTTCCSEEEEEEESSSE T ss_pred CCCEECCC-CCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCCCCEEEEEECCEE T ss_conf 52132268-87055400565157653435885789999987999898124213688886518465887837999978878 Q ss_pred E Q ss_conf 4 Q gi|254781038|r 147 T 147 (363) Q Consensus 147 T 147 (363) - T Consensus 154 G 154 (267) T 1woq_A 154 G 154 (267) T ss_dssp E T ss_pred E T ss_conf 5 No 45 >2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Probab=87.55 E-value=1.4 Score=22.50 Aligned_cols=208 Identities=18% Similarity=0.130 Sum_probs=108.0 Q ss_pred HHHHHHHHHHCCCCC-CCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEECCCCCCCC-HHHHHHH-HH Q ss_conf 999998875148643-33036776530132256799843999706874799983756430002233630-0238888-98 Q gi|254781038|r 101 MTAKAISYVSHKPFY-AINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDA-LGECFDK-IA 177 (363) Q Consensus 101 ~~Ak~la~~~~~Pli-~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda-~Ge~~DK-~a 177 (363) ..|+.++.-+++.+- .++--.|-.++....++-+.+.+.+=+=||+|.+-+.+...... +...+ .|+-||. ++ T Consensus 372 ~~a~~i~~nl~~~Ve~~g~Ep~AAa~~~l~~~~~~~gvaViDiGGGTtDVSIl~~~g~v~----s~~la~GGd~~t~~I~ 447 (610) T 2d0o_A 372 MIAREIEQKLNIDVQIGGAEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDII----ATHLAGAGDMVTMIIA 447 (610) T ss_dssp HHHHHHHHHHCCEEEEEEEHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECTTCCEE----EEEEECSHHHHHHHHH T ss_pred HHHHHHHHHHCCHHHHHCCCHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCCEEE----EEEECCCHHHHHHHHH T ss_conf 538899997366144232529999865489988637559999589827999997898799----9644363265639999 Q ss_pred HHCCCCCCH-HHHHHHHHHH------------CCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHH Q ss_conf 852887610-3556665540------------573334586111068875422102458999999851120121068899 Q gi|254781038|r 178 KSLGLPYPG-GVEIEKAALM------------GDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADIC 244 (363) Q Consensus 178 r~Lgl~yPg-Gp~ie~~A~~------------g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~dia 244 (363) ..|++++.- ...+.+.... +....++-+.+... ..+..+.+... ..+...+....++. T Consensus 448 ~~L~l~~~~~AE~iKk~~g~~~es~~~l~~~~~~ae~~k~~LS~~v--~~rv~i~~~~~-------~lp~~~~Isreel~ 518 (610) T 2d0o_A 448 RELGLEDRYLAEEIKKYPLAKVESLFHLRHEDGSVQFFSTPLPPAV--FARVCVVKADE-------LVPLPGDLALEKVR 518 (610) T ss_dssp HHHTCCCHHHHHHHHHSCEEEECSSSEEEETTSCEEECSSCCCGGG--TTCEEEECSSC-------EEECCTTCCHHHHH T ss_pred HHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCC--EEEEEECCCCC-------CCCEEEEECHHHHH T ss_conf 8630110666899986347653499999999866665333367012--56787414777-------87612787699999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHC--CCHHHHHHH Q ss_conf 99999999999999999999987621-445523654133458799999999999868988996287887--725899999 Q gi|254781038|r 245 ASFQVTVVRILQARLKQGFLLFRKAF-PHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLC--TDNAVMIAW 321 (363) Q Consensus 245 asfQ~~i~~~L~~k~~~a~~~~~~~~-~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~c--tDNAaMIA~ 321 (363) .-.+..+-+.+..-++++++...... ...+..+|++||-|.-..|++.+.+.+.+.++.+..|+.+-+ =+||+-.+. T Consensus 519 eii~~~leeIfe~~v~raLe~a~~~l~~~dIdgVVLVGGSSrlpgI~eLVte~L~~~~V~~Grg~irgv~~P~~AVA~GL 598 (610) T 2d0o_A 519 AIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGL 598 (610) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHCHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHH T ss_conf 99999999999999999998667544503489099988254110699999998479976416677656898889999999 No 46 >3hz6_A Xylulokinase; xylulose, structural genomic, manolate, transferase, structural genomics, PSI-2, protein structure initiative; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* Probab=86.81 E-value=1.6 Score=22.22 Aligned_cols=134 Identities=18% Similarity=0.083 Sum_probs=71.3 Q ss_pred CHHHHHHHHHHHCCCCCC-HHHHH-HHHHHH--CCCC-CCCCCCHHCCCCC-------CCCCCCHHHHHHHHHHHHHCCC Q ss_conf 002388889885288761-03556-665540--5733-3458611106887-------5422102458999999851120 Q gi|254781038|r 168 ALGECFDKIAKSLGLPYP-GGVEI-EKAALM--GDGK-RFKFPCPLVQGTL-------CDFSFSGLKTSVQKTICAFDVL 235 (363) Q Consensus 168 a~Ge~~DK~ar~Lgl~yP-gGp~i-e~~A~~--g~~~-~~~~P~p~~~~~~-------~dFSFSGLkTav~~~i~~~~~~ 235 (363) ..|.+++-+.+.++.... ...+. +..+.. ..+. .-.+-.|...+.. ..=+|.||.. T Consensus 305 ~~G~~~~w~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~gl~~~P~l~G~~~P~~~~~~~g~~~Gl~~------------ 372 (511) T 3hz6_A 305 NAGNILQWALTLVGHRPGEDCAEYFHMAAAEVQGVTVPDGLLFVPYLHAERCPVELPAPRGALLGVTG------------ 372 (511) T ss_dssp SSHHHHHHHGGGGTCCTTSCSHHHHHHHHHHHTTCCCCTTCEEEEESSCBCSSSCBSSCEEEEECCCT------------ T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC------------ T ss_conf 78999999999842131035677888776542046688874136875656798768566511106883------------ Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEE-CCHHHCC- Q ss_conf 12106889999999999999999999999987621445523654133458799999999999868988996-2878877- Q gi|254781038|r 236 EKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVA-PPARLCT- 313 (363) Q Consensus 236 ~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~-P~~~~ct- 313 (363) ..+..++..++.+.++-.+.. .++..+ ..+++.+.++||.+.|..+.+.+.++. |.++.. |..+.++ T Consensus 373 -~~~~~~l~rAilEgia~~~~~----~~e~l~---~~~~~~i~v~GG~s~n~~~~Qi~Adv~---~~pV~~~~~~~e~~a 441 (511) T 3hz6_A 373 -ATTRAQILLAVLEGAALSLRW----CAELLG---MEKVGLLKVVGGGARSEAWLRMIADNL---NVSLLVKPDAHLHPL 441 (511) T ss_dssp -TCCHHHHHHHHHHHHHHHHHH----HHHHHT---GGGCCEEEEESGGGGCHHHHHHHHHHH---TCEEEECCCGGGHHH T ss_pred -CCCHHHHHHHHHHHHHHHHHH----HHHHHC---CCCCCEEEEECCHHHHHHHHHHHHHHH---CCCEEECCCCCCHHH T ss_conf -123267789999999999999----999951---899887999846345799999999986---898597788861799 Q ss_pred CHHHHHHHHHH Q ss_conf 25899999999 Q gi|254781038|r 314 DNAVMIAWAAL 324 (363) Q Consensus 314 DNAaMIA~ag~ 324 (363) =-|||+|..+. T Consensus 442 ~GaA~la~~a~ 452 (511) T 3hz6_A 442 RGLAALAAVEL 452 (511) T ss_dssp HHHHHHHHHHT T ss_pred HHHHHHHHHHH T ss_conf 99999999983 No 47 >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Probab=83.95 E-value=2.1 Score=21.32 Aligned_cols=154 Identities=13% Similarity=0.067 Sum_probs=66.5 Q ss_pred CCCCEEEEEECCCEEEEEECCCCCCEECC-CCCCCCHHHHHH-HHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCC Q ss_conf 99843999706874799983756430002-233630023888-8988528876103556665540573334586111068 Q gi|254781038|r 134 AFPYLVLLVSGGHTQILLVRDVAHYDRLG-TTIDDALGECFD-KIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQG 211 (363) Q Consensus 134 ~~PfL~LlvSGGhT~l~~~~~~~~~~ilg-~T~Dda~Ge~~D-K~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~ 211 (363) ....+.+=+-||+|.+.++++.. ..+.. .+.+..-|..+| .+++.|.-.|.. ..+..+.. .... T Consensus 163 ~~~~lviDiGggTtd~~~~~~~~-~~~~~~~~~~~~G~~~i~~~i~~~l~~~~~~--~~~~~~~~-----------~~~~ 228 (320) T 2zgy_A 163 LDSLLIIDLGGTTLDISQVMGKL-SGISKIYGDSSLGVSLVTSAVKDALSLARTK--GSSYLADD-----------IIIH 228 (320) T ss_dssp TCEEEEEEECSSCEEEEEEEGGG-CCEEEEEEECSCCTHHHHHHHHHHTTCCSBG--GGHHHHHH-----------HHHT T ss_pred CCEEEEEECCCCEEEEEEEECCE-EEEEEEECCCCCCHHHHHHHHHHHHHHHHCC--CCCHHHHH-----------HHHH T ss_conf 85499998389869999993880-7998740683432799999999999997274--74077999-----------9997 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHH Q ss_conf 87542210245899999985112012106889999999999999999999999987621445523654133458799999 Q gi|254781038|r 212 TLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRA 291 (363) Q Consensus 212 ~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~ 291 (363) . . .....+ . .........++...++..+ +-+.+.+...+. + ......++++||-| .+|++ T Consensus 229 ~-~-------~~~~~~---~-~~~~~~~~~~~~~~~~~~~-~~i~~~i~~~~~---~--~~~~~~I~l~GGga--~li~~ 288 (320) T 2zgy_A 229 R-K-------DNNYLK---Q-RINDENKISIVTEAMNEAL-RKLEQRVLNTLN---E--FSGYTHVMVIGGGA--ELICD 288 (320) T ss_dssp T-T-------CHHHHH---H-HSSSSCTHHHHHHHHHHHH-HHHHHHHHHHHT---T--CCCCCEEEEESTTH--HHHHH T ss_pred H-H-------CCCEEE---E-CCCCHHHHHHHHHHHHHHH-HHHHHHHHHHCC---C--HHCCCEEEEECCHH--HHHHH T ss_conf 5-4-------062002---0-4563009999999999999-999999998566---3--41298599998888--88999 Q ss_pred HHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHHHHH Q ss_conf 999999868988996287887725899999999999 Q gi|254781038|r 292 SLIDLCVLHGFRFVAPPARLCTDNAVMIAWAALERM 327 (363) Q Consensus 292 ~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ag~~~~ 327 (363) .+++.+...+.+++.| ||..+=-.-|+.++ T Consensus 289 ~l~~~~~~~~~~v~~~------~~p~~A~~~G~~~~ 318 (320) T 2zgy_A 289 AVKKHTQIRDERFFKT------NNSQYDLVNGMYLI 318 (320) T ss_dssp HHHHTSCCCGGGEECC------SCGGGHHHHHHHHH T ss_pred HHHHHHCCCCCCEEEC------CCCHHHHHHHHHHH T ss_conf 9999958999877978------99768999999985 No 48 >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinase-HSP70- actin superfamily, L-rhamnulose kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* Probab=82.24 E-value=0.23 Score=28.07 Aligned_cols=76 Identities=20% Similarity=0.222 Sum_probs=40.2 Q ss_pred CCCCCCEEEEEECCCHHHEEEEEECCCCCCEEEEEE---EECC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 988884688750260220778873388884189887---3113-346212187145599999999699999999998389 Q gi|254781038|r 1 MSKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEA---VLSQ-IDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANM 76 (363) Q Consensus 1 m~~~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~---~~sq-~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~ 76 (363) |+. +.|||||--.-.+-++|++. ++++++.. ..+. ...+.+-|..... .+.+-..+.++++++.. T Consensus 1 M~~--~~~lgiDiGTtsvKa~l~d~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~d------~~~~~~~v~~~l~~~~~ 69 (489) T 2uyt_A 1 MTF--RNCVAVDLGASSGRVMLARY---ERECRSLTLREIHRFNNGLHSQNGYVTWD------VDSLESAIRLGLNKVCA 69 (489) T ss_dssp -CC--EEEEEEEECSSEEEEEEEEE---EGGGTEEEEEEEEEEECCCEEETTEEECC------HHHHHHHHHHHHHHHHH T ss_pred CCC--CEEEEEECCCCCEEEEEEEC---CCCEEEEEEEEEECCCCCCCCCCCCCEEC------HHHHHHHHHHHHHHHHC T ss_conf 998--76999977643526589967---99889999998651699873489964898------99999999999999844 Q ss_pred CCCCCCEEEEC Q ss_conf 82245368740 Q gi|254781038|r 77 QISDMDSIAVT 87 (363) Q Consensus 77 ~~~~id~Iavt 87 (363) +..+|.+|++| T Consensus 70 ~~~~I~aI~is 80 (489) T 2uyt_A 70 AGIAIDSIGID 80 (489) T ss_dssp TTCCCCEEEEE T ss_pred CCCCCEEEEEE T ss_conf 88981599993 No 49 >2b06_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Probab=81.76 E-value=2.6 Score=20.76 Aligned_cols=72 Identities=13% Similarity=0.248 Sum_probs=44.3 Q ss_pred CCCCCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 988884688750260220778873388884189887311334621----2187145599999999699999999998389 Q gi|254781038|r 1 MSKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHG----HYGGVVPEVAARAHVDVLDILIKQTLLRANM 76 (363) Q Consensus 1 m~~~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~----~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~ 76 (363) |++.++.|+ |++|++.+.+ +.+||--.+........ .-|+|-|.+. -..-+++++.+|.|+ T Consensus 1 m~~~~~~i~--------~~i~~i~~~~-~~~vLl~~R~~~~~~~~~w~~PGG~ve~gEs------~~~aa~RE~~EEtGl 65 (155) T 2b06_A 1 MSRSQLTIL--------TNICLIEDLE-TQRVVMQYRAPENNRWSGYAFPGGHVENDEA------FAESVIREIYEETGL 65 (155) T ss_dssp CCGGGCEEE--------EEEEEEEETT-TTEEEEEEEC-----CCEEECCCCBCCTTSC------HHHHHHHHHHHHHSE T ss_pred CCCCCCEEE--------EEEEEEEECC-CCEEEEEEECCCCCCCCCEECCEEEECCCCC------HHHHHHHHHHHHHCC T ss_conf 998775789--------8999999899-9999999988999999889993032869999------999999999998693 Q ss_pred CCCCCCEEEEC Q ss_conf 82245368740 Q gi|254781038|r 77 QISDMDSIAVT 87 (363) Q Consensus 77 ~~~~id~Iavt 87 (363) ....+..+.+. T Consensus 66 ~~~~~~~~~~~ 76 (155) T 2b06_A 66 TIQNPQLVGIK 76 (155) T ss_dssp EEESCEEEEEE T ss_pred EEECCEEEEEE T ss_conf 34312699999 No 50 >2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* Probab=79.62 E-value=3 Score=20.28 Aligned_cols=31 Identities=29% Similarity=0.226 Sum_probs=18.9 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEECCCCC Q ss_conf 9699999999998389822453687406643 Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMDSIAVTAGPG 91 (363) Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id~Iavt~gPG 91 (363) +....+.+++++.+++.-.+.+.+.+-.|-+ T Consensus 85 ~~~~~a~~~Al~dag~~~~~~~~~gv~vg~~ 115 (416) T 2wge_A 85 RMGKLLGGQLWESAGSPEVDPDRFAVVVGTG 115 (416) T ss_dssp HHHHHHHHHHHHHTTCCCCCGGGEEEEEECC T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEECC T ss_conf 9999999999997368777810012387415 No 51 >2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} SCOP: c.55.1.2 c.55.1.2 PDB: 1x3n_A* 2e1y_A 1x3m_A* 2e20_A* Probab=79.53 E-value=2.9 Score=20.41 Aligned_cols=73 Identities=19% Similarity=0.323 Sum_probs=48.4 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHH-HHHHHHHHHHHHHHHCC-------------------------CEE Q ss_conf 9999999999999998762144552365413345-87999999999998689-------------------------889 Q gi|254781038|r 251 VVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVA-SNHFIRASLIDLCVLHG-------------------------FRF 304 (363) Q Consensus 251 i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVa-aN~~LR~~l~~~~~~~~-------------------------~~~ 304 (363) +++..+-++.+.+-.+-... .++..||+.||++ .+..+|+++.+-++-.| +++ T Consensus 309 a~d~f~y~i~k~IGa~aa~L-ggvDaiVfTGGige~s~~vR~~i~~~l~~lgi~lD~~~N~~~~~~~~~~is~~~s~v~v 387 (415) T 2e1z_A 309 AIKTFVHRIARHIAGHAASL-HRLDGIIFTGGIGENSVLIRQLVIEHLGVLGLTLDVEMNKQPNSHGERIISANPSQVIC 387 (415) T ss_dssp HHHHHHHHHHHHHHHHHTTC-SSCCEEEEEHHHHHHCHHHHHHHHHTTGGGTCCBCHHHHHSCGGGCSEECBCTTCSSEE T ss_pred HHHHHHHHHHHHHHHHHHHH-CCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEECHHHHCCCCCCCCCEECCCCCCCEE T ss_conf 99999999999999999987-89999998773035869999999841034063677878404357888765589997369 Q ss_pred EECCHHHCCCHHHHHHHHHHHHHH Q ss_conf 962878877258999999999998 Q gi|254781038|r 305 VAPPARLCTDNAVMIAWAALERME 328 (363) Q Consensus 305 ~~P~~~~ctDNAaMIA~ag~~~~~ 328 (363) +.-| ||--.|||.-.+...+ T Consensus 388 ~vip----t~Ee~~iA~~~~~l~~ 407 (415) T 2e1z_A 388 AVIP----TNEEKMIALDAIHLGN 407 (415) T ss_dssp EECC----CCHHHHHHHHHHHHTT T ss_pred EEEC----CCHHHHHHHHHHHHHC T ss_conf 9978----9779999999999836 No 52 >1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5 Probab=79.34 E-value=3.1 Score=20.22 Aligned_cols=250 Identities=12% Similarity=0.073 Sum_probs=99.5 Q ss_pred EEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCEEEE Q ss_conf 887502602207788733888841898873113346212187145599999-9996999999999983898224536874 Q gi|254781038|r 8 VIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARA-HVDVLDILIKQTLLRANMQISDMDSIAV 86 (363) Q Consensus 8 ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~-H~~~l~~li~~~l~~a~~~~~~id~Iav 86 (363) ||+||.=.-.|..++++ +++++...+. ||..|...... =.++|...+++++.+++++. +..-.. T Consensus 2 IL~IDgGGTKT~~vl~d----~g~~i~~~~~---------gg~Np~~~~~~~~~~~i~~~i~~~~~~~~i~~--~~~~~a 66 (291) T 1zxo_A 2 ILIADSGSTKTDWCVVL----NGAVIKRLGT---------KGINPFFQSEEEIQQKLTASLLPQLPEGKFNA--VYFYGA 66 (291) T ss_dssp --CEECCTTCEEEEEEC----SSSEEEEEEE---------CCCCTTTSCSTTTTTTTTC---------------CEEECT T ss_pred EEEEEECHHHEEEEEEE----CCCEEEEEEC---------CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCE--EEEEEE T ss_conf 89999452256899994----9968999972---------77882418999999999999997625269874--899960 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEE---CC Q ss_conf 066430125677999999988751-48643330367765301322567998439997068747999837564300---02 Q gi|254781038|r 87 TAGPGLMGGLIVGLMTAKAISYVS-HKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDR---LG 162 (363) Q Consensus 87 t~gPG~~~~L~vG~~~Ak~la~~~-~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~i---lg 162 (363) ..+......+ ..+.+...+ ..++.=+|-.++=+.++. .. -| =.+.++|-=+..+..++.+.... .| T Consensus 67 G~~~~~~~~~-----~~~~l~~~~~~~~~~v~~D~~~a~~~~~-~~---~~-Giv~I~GTGS~~~~~~~~g~~~r~GGwG 136 (291) T 1zxo_A 67 GCTPEKAPVL-----RRAIADSLPVIGNIKANSDMLAAAHGLC-GQ---KA-GIACILGTGSNSCFYNGKEIVSNISPLG 136 (291) T ss_dssp TCCTTTTHHH-----HHHHHHHSCCCSCCEEECSHHHHHHHTT-TT---SC-BEEEEESSSEEEEEECSSSEEEECCCCC T ss_pred CCCCCHHHHH-----HHHHHHHCCCCCEEEEECCCHHHHHHHC-CC---CC-EEEEECCCCCEEEEEECCCCEEEECCCC T ss_conf 0275115789-----9999987468855999758489999733-69---98-5999858883169992898689815888 Q ss_pred CCCCCC-HH-----HHHHHHHHHCCCCCCHHHHHHHHHHH-CCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 233630-02-----38888988528876103556665540-573334586111068875422102458999999851120 Q gi|254781038|r 163 TTIDDA-LG-----ECFDKIAKSLGLPYPGGVEIEKAALM-GDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVL 235 (363) Q Consensus 163 ~T~Dda-~G-----e~~DK~ar~Lgl~yPgGp~ie~~A~~-g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~ 235 (363) --+.|- =| +++-.+-|.. .+-..-+.+.+. +......+. ........+.-++.+-..+ .+. . T Consensus 137 ~~lGDeGSG~~iG~~al~~~l~~~----d~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~A~~a~~v----~~~--~ 205 (291) T 1zxo_A 137 FILGDEGSGAVLGKLLVGDILKNQ----LPATLKEEFLKQFDLTPPEIID-RVYRQPFPNRFLASLSPFI----AQH--L 205 (291) T ss_dssp TTTSCCSSHHHHHHHHHHHGGGTC----SCSHHHHHHHHHHTCCHHHHGG-GTTTSSCSTTTSSTTTHHH----HTT--T T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHCCCHHHHHH-HHHHCCCCCCHHHHHHHHH----HHC--C T ss_conf 666898649999999999999735----7713789999997899678789-9986359721102246998----861--6 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEE Q ss_conf 12106889999999999999999999999987621445523654133458799999999999868988996 Q gi|254781038|r 236 EKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVA 306 (363) Q Consensus 236 ~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~ 306 (363) +++...+| +++++.+ +++.. +. ......-.|+++|||+. ++++.|++.++++++++.- T Consensus 206 ~~~~a~~i---i~~~~~~-~~~~~---~~----~~~~~~~pv~~~Gsva~--~~~~~L~~~l~~~~i~~~~ 263 (291) T 1zxo_A 206 EEPAIRQL---VMNSFIA-FFRRN---VM----QYDYKQYPVHFIGSIAY--CYKEILQDAARQTGIQIGK 263 (291) T ss_dssp TSTTTTHH---HHHHHHH-HHTTT---GG----GSCTTTSCEEECSHHHH--HTHHHHHHHTTTTTCCEEE T ss_pred CCHHHHHH---HHHHHHH-HHHHH---HH----HCCCCCCEEEEECCHHH--HHHHHHHHHHHHCCCEEEE T ss_conf 98899999---9999999-99999---98----54789971999917589--9999999999986998711 No 53 >2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, cytoplasm, thiolase fold; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... Probab=79.20 E-value=1.7 Score=22.00 Aligned_cols=72 Identities=17% Similarity=0.282 Sum_probs=45.3 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC-CCHHHHHHHHHHHHHHHHHHHCC----CCCCC Q ss_conf 62121871455999999996999999999983898224536874066-43012567799999998875148----64333 Q gi|254781038|r 43 QHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAG-PGLMGGLIVGLMTAKAISYVSHK----PFYAI 117 (363) Q Consensus 43 ~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~g-PG~~~~L~vG~~~Ak~la~~~~~----Pli~V 117 (363) .-++|+|..... .-.+.....++++|++++++.++||.+-+..- |+. . |.+.|+..+...++ |.+-| T Consensus 14 P~g~~~G~l~~~---~~~eL~a~a~~~al~~agi~~~~Id~v~~G~~~~~~-~----g~~~ar~~al~aGlp~~vp~~~v 85 (392) T 2vu1_A 14 AVGSFNGAFANT---PAHELGATVISAVLERAGVAAGEVNEVILGQVLPAG-E----GQNPARQAAMKAGVPQEATAWGM 85 (392) T ss_dssp CCEETTSTTTTC---CHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTT-S----CSCHHHHHHHHTTCCTTSEEEEE T ss_pred CCCCCCCCCCCC---CHHHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCC-C----CCHHHHHHHHHCCCCCCCCEEEE T ss_conf 325789877899---999999999999998709698997999999447656-6----65699999997799987761898 Q ss_pred HHHHH Q ss_conf 03677 Q gi|254781038|r 118 NHLEG 122 (363) Q Consensus 118 nH~~a 122 (363) |..-+ T Consensus 86 ~~~Ca 90 (392) T 2vu1_A 86 NQLCG 90 (392) T ss_dssp ECGGG T ss_pred ECCCH T ss_conf 45421 No 54 >1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A Probab=77.58 E-value=3.5 Score=19.88 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=42.9 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH----CCCCCCCHH Q ss_conf 2121871455999999996999999999983898224536874066430125677999999988751----486433303 Q gi|254781038|r 44 HGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVS----HKPFYAINH 119 (363) Q Consensus 44 ~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~----~~Pli~VnH 119 (363) -++|+|.....-. .+.....++++|++++++.+|||.+.++....... |-+.++..+... .+|.+-|+. T Consensus 18 fg~~~G~l~~~~~---~eLa~~a~~~al~dagl~~~dID~v~~G~v~~~~~----~~~~ar~~al~~g~~~~ip~~tv~~ 90 (397) T 1wl4_A 18 IGSFNGALAAVPV---QDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGC----GQNPVRQASVGAGIPYSVPAWSCQM 90 (397) T ss_dssp CEETTSTTTTSCH---HHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTTS----CSCHHHHHHHHTTCCTTSCEEEECC T ss_pred CCCCCCCCCCCCH---HHHHHHHHHHHHHHCCCCHHHHCEEEEEECCCCCC----CCHHHHHHHHHCCCCCCCCCEEEEC T ss_conf 2468986799999---99999999999987196989919999993176565----6449999999769998644233401 Q ss_pred HHH Q ss_conf 677 Q gi|254781038|r 120 LEG 122 (363) Q Consensus 120 ~~a 122 (363) .-+ T Consensus 91 aC~ 93 (397) T 1wl4_A 91 ICG 93 (397) T ss_dssp GGG T ss_pred CCH T ss_conf 342 No 55 >3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A Probab=76.37 E-value=3.7 Score=19.66 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=38.1 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEECCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH Q ss_conf 9996999999999983898224536874066-43012567799999998875148643330367 Q gi|254781038|r 59 HVDVLDILIKQTLLRANMQISDMDSIAVTAG-PGLMGGLIVGLMTAKAISYVSHKPFYAINHLE 121 (363) Q Consensus 59 H~~~l~~li~~~l~~a~~~~~~id~Iavt~g-PG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~ 121 (363) ..+.+...+.++|++++++.+|||.+-+..- +-.. .+...+..+++|.++|+-.- T Consensus 55 E~~L~~eA~~~ALekAGl~~~dID~vi~Gdll~q~~--------~a~~~a~~lgIP~~~V~~AC 110 (347) T 3lma_A 55 ERKLMEDAVQSALSKQNLKKEDIDIFLAGDLLNQNV--------TANYVARHLKIPFLCLFGAC 110 (347) T ss_dssp HHHHHHHHHHHHHHTTTCCGGGCSEEEEEESSSSST--------THHHHHHHHCCCEEEBCCST T ss_pred HHHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCHH--------HHHHHHHHCCCCEEEECCCC T ss_conf 999999999999998198989998999841578727--------99999997499888515655 No 56 >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Probab=74.52 E-value=4.2 Score=19.34 Aligned_cols=78 Identities=18% Similarity=0.167 Sum_probs=47.3 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEC-CHHHCC-CHH Q ss_conf 068899999999999999999999999876214455236541334587999999999998689889962-878877-258 Q gi|254781038|r 239 DIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAP-PARLCT-DNA 316 (363) Q Consensus 239 ~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P-~~~~ct-DNA 316 (363) +..++..++.+.++=.+ +..++.++.. ...++.++++||.+.|..+++.+.++. |.++..+ ..+.++ =-| T Consensus 357 ~~~~l~ra~~Egla~~~----~~~~~~~~~~-~~~~~~i~~~GG~s~s~~~~Qi~Adv~---g~pV~~~~~~~~~~a~Ga 428 (484) T 2itm_A 357 GPNELARAVLEGVGYAL----ADGMDVVHAC-GIKPQSVTLIGGGARSEYWRQMLADIS---GQQLDYRTGGDVGPALGA 428 (484) T ss_dssp CHHHHHHHHHHHHHHHH----HHHHHHHHTT-TCCCSCEEEESGGGCCHHHHHHHHHHH---CCCEEEESCTTSCHHHHH T ss_pred CHHHHHHHHHHHHHHHH----HHHHHHHHHC-CCCCCEEEEECCCHHCHHHHHHHHHHH---CCEEEECCCCCHHHHHHH T ss_conf 87999999999999987----6689999970-999777999887121899999999987---990585588736899999 Q ss_pred HHHHHHHH Q ss_conf 99999999 Q gi|254781038|r 317 VMIAWAAL 324 (363) Q Consensus 317 aMIA~ag~ 324 (363) ||+|..+. T Consensus 429 A~la~~~~ 436 (484) T 2itm_A 429 ARLAQIAA 436 (484) T ss_dssp HHHHHHHH T ss_pred HHHHHHHC T ss_conf 99999875 No 57 >1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} SCOP: c.55.1.2 c.55.1.2 PDB: 1tuu_A* 1tuy_A* Probab=72.59 E-value=4.6 Score=19.03 Aligned_cols=75 Identities=19% Similarity=0.246 Sum_probs=48.9 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHH-HHHHHHHHHHHHHHCCC-----------------------EEEE Q ss_conf 99999999999999987621445523654133458-79999999999986898-----------------------8996 Q gi|254781038|r 251 VVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVAS-NHFIRASLIDLCVLHGF-----------------------RFVA 306 (363) Q Consensus 251 i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaa-N~~LR~~l~~~~~~~~~-----------------------~~~~ 306 (363) +++..+-++.+.+-.+-.... ++..+|+.||++- +..+|+++-+-++-.|+ +++. T Consensus 301 a~d~~~y~i~k~Iga~aa~Lg-GvDaiVfTGGIge~s~~vR~~i~~~l~~lGi~lD~~~N~~~~~~~~is~~~s~v~v~v 379 (408) T 1g99_A 301 ALEIFAYKVKKFIGEYSAVLN-GADAVVFTAGIGENSASIRKRILTGLDGIGIKIDDEKNKIRGQEIDISTPDAKVRVFV 379 (408) T ss_dssp HHHHHHHHHHHHHHHHHHHTT-SCSEEEEEHHHHHHCHHHHHHHHTTCGGGTCCBCTTGGGCCSSCEECBCTTCSSEEEE T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEECHHHHHCCCCCCEECCCCCCCEEEE T ss_conf 999999999999999998758-9998998784024889999999853124172676888625787744338999842999 Q ss_pred CCHHHCCCHHHHHHHHHHHHHHCC Q ss_conf 287887725899999999999849 Q gi|254781038|r 307 PPARLCTDNAVMIAWAALERMEAG 330 (363) Q Consensus 307 P~~~~ctDNAaMIA~ag~~~~~~g 330 (363) -| ||---|||.-.+..++.. T Consensus 380 i~----t~Ee~~iA~~~~~~l~~~ 399 (408) T 1g99_A 380 IP----TNEELAIARETKEIVETE 399 (408) T ss_dssp CC----CCHHHHHHHHHHHHHHC- T ss_pred EC----CCHHHHHHHHHHHHHHHC T ss_conf 77----977999999999999737 No 58 >2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genomics consortium, SGC, transferase; 2.55A {Homo sapiens} Probab=71.84 E-value=4.8 Score=18.92 Aligned_cols=62 Identities=19% Similarity=0.314 Sum_probs=41.1 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHC----CCCCCCHHHHHHHHC Q ss_conf 969999999999838982245368740664301256779999999887514----864333036776530 Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSH----KPFYAINHLEGHILT 126 (363) Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~----~Pli~VnH~~aH~~~ 126 (363) +.....++++|++++++.++||.+.+..--.- + -|.+.|+..++..+ +|.+-||..-+=-.. T Consensus 57 dL~~~a~~~al~~agi~~~~ID~vi~G~v~~~--g--~g~~~ar~aal~aGlp~~vPa~tVe~aCaSG~~ 122 (418) T 2iik_A 57 ELLSAVMTAVLKDVNLRPEQLGDICVGNVLQP--G--AGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQ 122 (418) T ss_dssp HHHHHHHHHHHHHHTCCGGGCCCEEEECSSSB--G--GGHHHHHHHHHHTTCCTTSCEEEEECGGGHHHH T ss_pred HHHHHHHHHHHHHCCCCHHHCCEEEEEECCCC--C--CCCHHHHHHHHHCCCCCCCCEEEECCCCHHHHH T ss_conf 99999999999974989899499999907876--6--666599999997799988863897360577789 No 59 >2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty acid metabolism, oxylipin biosynthesis, plant lipid metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A 2c7z_A 2wua_A Probab=71.84 E-value=4.8 Score=18.92 Aligned_cols=60 Identities=12% Similarity=0.136 Sum_probs=39.3 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCC-CCHHHHHHHHHHHHHHHHHHHC----CCCCCCHHHHHH Q ss_conf 996999999999983898224536874066-4301256779999999887514----864333036776 Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMDSIAVTAG-PGLMGGLIVGLMTAKAISYVSH----KPFYAINHLEGH 123 (363) Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id~Iavt~g-PG~~~~L~vG~~~Ak~la~~~~----~Pli~VnH~~aH 123 (363) .+.....++++|++++++.++||.+-+..- |+.. -+.+.++..+...+ +|.+-||..-+= T Consensus 56 ~dL~a~av~~al~~agi~~~~Id~vi~G~~~~~g~----~~~n~ar~~al~aGLp~~vPa~tVe~aCaS 120 (442) T 2wu9_A 56 DDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPGS----QRASECRMAAFYAGFPETVAVRTVNRQCSS 120 (442) T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCCEEEECCSSBHH----HHHHHHHHHHHHTTCCTTSCEEEEECGGGH T ss_pred HHHHHHHHHHHHHHCCCCHHHHCEEEEEEECCCCC----CCCCHHHHHHHHCCCCCCCCEEEECCCCHH T ss_conf 99999999999998296989909899996046665----667799999997699988765898151279 No 60 >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Probab=71.65 E-value=4.8 Score=18.89 Aligned_cols=206 Identities=13% Similarity=0.110 Sum_probs=84.4 Q ss_pred CCEEEECCCCCHHHH-HHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHCCCCCCCC-CCCCEEEEEECCCEEEEEECC--- Q ss_conf 536874066430125-6779999999887514864333-0367765301322567-998439997068747999837--- Q gi|254781038|r 81 MDSIAVTAGPGLMGG-LIVGLMTAKAISYVSHKPFYAI-NHLEGHILTARLTDDI-AFPYLVLLVSGGHTQILLVRD--- 154 (363) Q Consensus 81 id~Iavt~gPG~~~~-L~vG~~~Ak~la~~~~~Pli~V-nH~~aH~~~~~l~~~~-~~PfL~LlvSGGhT~l~~~~~--- 154 (363) ++.+.+|+ |-.++. -|--+.-| |...+.+.+.+ +--+|=++.-.+.... +-.+|.+=+-||+|.+.+++- T Consensus 135 ~~~~Vitv-P~~~~~~qr~~l~~A---a~~AG~~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~Gggt~d~sv~~~~~~ 210 (383) T 1dkg_D 135 VTEAVITV-PAYFNDAQRQATKDA---GRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEV 210 (383) T ss_dssp CCEEEECB-CTTCCHHHHHHHHHH---HHHTTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC- T ss_pred CCEEEEEE-CCCCCHHHHHHHHHH---HHHCCCCEEEEEEHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEEEEEECC T ss_conf 98099999-989899999999999---99869984799742999999817777999809999997899099999999866 Q ss_pred --CCCCEECCCCCCCC-HHHHHHHHHH-H--------CCCCCCHHH-HHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHH Q ss_conf --56430002233630-0238888988-5--------288761035-566655405733345861110688754221024 Q gi|254781038|r 155 --VAHYDRLGTTIDDA-LGECFDKIAK-S--------LGLPYPGGV-EIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGL 221 (363) Q Consensus 155 --~~~~~ilg~T~Dda-~Ge~~DK~ar-~--------Lgl~yPgGp-~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGL 221 (363) ...+++++..-|.. -|+.||+.=. . -+++.+.-+ .+.++-+....-+..|. .....++++.++ T Consensus 211 ~~~~~~~vl~~~g~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls----~~~~~~i~i~~~ 286 (383) T 1dkg_D 211 DGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELS----SAQQTDVNLPYI 286 (383) T ss_dssp ---CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTT----SSSEEEEEEEEE T ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC----CCCCEEEEEEEE T ss_conf 7883799999469967098999999999999998787299965299999999999999999846----998247887522 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHH Q ss_conf 589999998511201210688999999999999999999999998762144552365413345879999999999986 Q gi|254781038|r 222 KTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVL 299 (363) Q Consensus 222 kTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~ 299 (363) ..... ......-.-.+.++...++. +++-+.+.++.++.... .....+..++++||-+...+||+.+++.... T Consensus 287 ~~~~~---~~~~~~~~itr~~~e~~~~~-~~~~i~~~i~~~l~~a~-~~~~~I~~V~lvGG~s~~p~v~~~i~~~f~~ 359 (383) T 1dkg_D 287 TADAT---GPKHMNIKVTRAKLESLVED-LVNRSIELLKVALQDAG-LSVSDIDDVILVGGQTRMPMVQKKVAEFFGK 359 (383) T ss_dssp EEETT---EEEEEEEEEEHHHHHHHSHH-HHHHHHHHHHHHHHTTT-CCTTTCCEEEEESGGGGSHHHHHHHHHHHSS T ss_pred ECCCC---CCCEEEEEEEHHHHHHHHHH-HHHHHHHHHHHHHHHCC-CCHHHCCEEEEECCCCCHHHHHHHHHHHHCC T ss_conf 05788---88306999809999999999-99999999999999839-8988999999989510458999999998688 No 61 >1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A* Probab=71.40 E-value=4.9 Score=18.85 Aligned_cols=131 Identities=18% Similarity=0.139 Sum_probs=66.0 Q ss_pred CCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE Q ss_conf 88468875026022077887338888418988731133462121871455999999996999999999983898224536 Q gi|254781038|r 4 IKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDS 83 (363) Q Consensus 4 ~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~ 83 (363) .++++|++|==--.+-+|+++.+ .++|....+.+..+ + +.+...+++.+++.+.++..+ + T Consensus 12 ~~~y~L~~DIGGT~ir~alvd~~--~~~i~~~~~~~~~~-~----------------~~~~~~l~~~~~~~~~~~~~i-g 71 (332) T 1sz2_A 12 STKYALVGDVGGTNARLALCDIA--SGEISQAKTYSGLD-Y----------------PSLEAVIRVYLEEHKVEVKDG-C 71 (332) T ss_dssp --CEEEEEEEETTEEEEEEEETT--TCCEEEEEEEEGGG-C----------------SCHHHHHHHHHHHSCCCCCEE-E T ss_pred CCCEEEEEEECHHHHHHEEEECC--CCEEEEEEEECCCC-H----------------HHHHHHHHHHHHHCCCCCCEE-E T ss_conf 33289999988154325569899--99897889878987-6----------------479999999998659987759-9 Q ss_pred EEECCCCCH-----HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC------------CCCCCCEEEEEECCC Q ss_conf 874066430-----125677999999988751486433303677653013225------------679984399970687 Q gi|254781038|r 84 IAVTAGPGL-----MGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTD------------DIAFPYLVLLVSGGH 146 (363) Q Consensus 84 Iavt~gPG~-----~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~------------~~~~PfL~LlvSGGh 146 (363) |++ .||-. .....-.......+......|+.-.|-.+..++.-.... .-...++.+-...|. T Consensus 72 I~~-pGpv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~lgtG~G~ 150 (332) T 1sz2_A 72 IAI-ACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFTAVSMAIPMLKKEHLIQFGGAEPVEGKPIAVYGAGTGL 150 (332) T ss_dssp EEE-SSCCCSSEECCSSSCCCEEHHHHHHHHTCSEEEEEEHHHHHHHHGGGCCGGGEEECSSCCCCTTCCEEEEEESSSE T ss_pred EEE-CCCCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC T ss_conf 990-2564287346631433578689987642563566237332122444455646777376778886269998376656 Q ss_pred EEEEEECCC Q ss_conf 479998375 Q gi|254781038|r 147 TQILLVRDV 155 (363) Q Consensus 147 T~l~~~~~~ 155 (363) ..++..+.. T Consensus 151 g~~~~~~~~ 159 (332) T 1sz2_A 151 GVAHLVHVD 159 (332) T ss_dssp EEEEEEEET T ss_pred EEEEEECCC T ss_conf 567860345 No 62 >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural protein; 1.90A {Thermoplasma acidophilum dsm 1728} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Probab=70.77 E-value=5 Score=18.80 Aligned_cols=46 Identities=13% Similarity=0.175 Sum_probs=28.5 Q ss_pred CCCEEEEEECCCEEEEEECCCCC-C-EECCCCCCCCHHHHHHHHHHHC Q ss_conf 98439997068747999837564-3-0002233630023888898852 Q gi|254781038|r 135 FPYLVLLVSGGHTQILLVRDVAH-Y-DRLGTTIDDALGECFDKIAKSL 180 (363) Q Consensus 135 ~PfL~LlvSGGhT~l~~~~~~~~-~-~ilg~T~Dda~Ge~~DK~ar~L 180 (363) ...+.+=+-||+|.+..++.... + .....|.+...-++.+++++.| T Consensus 190 ~~~lviDiG~gTtdv~v~~~~~~~~~~~~~~~~~~G~~~i~~~i~~~l 237 (346) T 2fsj_A 190 GYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGDAISALSRKI 237 (346) T ss_dssp SEEEEEEECSSCEEEEEEETTTTEECGGGCEEESCCHHHHHHHHHHHH T ss_pred CCEEEEEECCCEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHH T ss_conf 738999908991899999878937987523771502899999999999 No 63 >3lm2_A Putative kinase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, transferase; HET: MSE; 1.70A {Agrobacterium tumefaciens} Probab=67.89 E-value=5.8 Score=18.36 Aligned_cols=121 Identities=15% Similarity=0.087 Sum_probs=55.5 Q ss_pred CCCCCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 98888468875026022077887338888418988731133462121871455999999996999999999983898224 Q gi|254781038|r 1 MSKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISD 80 (363) Q Consensus 1 m~~~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~ 80 (363) |++. +.|||||=--..+.+++++ .++++...... .. -| . .+...+.+.+++. + T Consensus 2 m~~~-~~vlgiDIGGT~i~~~l~d---~~~~~~~~t~~---~~-------~~----~----~~~~~i~~~i~~~-----~ 54 (226) T 3lm2_A 2 MAED-QTVLAIDIGGSHVKIGLST---DGEERKVESGK---TM-------TG----P----EMVAAVTAMAKDM-----T 54 (226) T ss_dssp CGGG-CCEEEEEECSSEEEEEETT---TCCEEEEECCT---TC-------CH----H----HHHHHHHHHTTTC-----C T ss_pred CCCC-CEEEEEEECCCEEEEEEEE---CCCCEEEECCC---CC-------CH----H----HHHHHHHHHHHHH-----C T ss_conf 9878-8599999788569999997---99868996589---99-------97----9----9999999999750-----3 Q ss_pred CCEEEECCCCCHHHH---HHH-----HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEE Q ss_conf 536874066430125---677-----999999988751486433303677653013225679984399970687479998 Q gi|254781038|r 81 MDSIAVTAGPGLMGG---LIV-----GLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLV 152 (363) Q Consensus 81 id~Iavt~gPG~~~~---L~v-----G~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~ 152 (363) ++.|+++. ||..-. ... ......-+...+++|+.=.|-..+.++.-.... .++.+.++-|=-.=+.. T Consensus 55 ~~~igi~~-pG~vd~~~~i~~~~~~~~~~~~~~l~~~~g~pv~v~NDanaaalgE~~~~----~~~~i~~GtGiG~gii~ 129 (226) T 3lm2_A 55 YDVIAMGY-PGPVVHNKPLREPVNLGEGWVGYDYEGAFGRPVRIVNDALMQAIGSYNGG----RMLFLGLGTGLGAAMIV 129 (226) T ss_dssp CSEEEEEE-SSCEETTEECSCCTTSCSCCTTCCHHHHHTSCEEEEEHHHHHHHHHCCSS----EEEEEEESSSEEEEEEE T ss_pred CCCCEEEC-CCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHHHCC----CCCEEEEEEEEEEEEEE T ss_conf 23518951-68877773289605766300135799861999899247999885342347----77659972899988999 Q ss_pred C Q ss_conf 3 Q gi|254781038|r 153 R 153 (363) Q Consensus 153 ~ 153 (363) + T Consensus 130 ~ 130 (226) T 3lm2_A 130 E 130 (226) T ss_dssp T T ss_pred C T ss_conf 9 No 64 >2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta- alpha-beta-alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* Probab=67.03 E-value=6 Score=18.24 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=40.8 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC-CCHHHHHHHHHHHHHHHHHHH----CCCCCCCH Q ss_conf 2121871455999999996999999999983898224536874066-430125677999999988751----48643330 Q gi|254781038|r 44 HGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAG-PGLMGGLIVGLMTAKAISYVS----HKPFYAIN 118 (363) Q Consensus 44 ~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~g-PG~~~~L~vG~~~Ak~la~~~----~~Pli~Vn 118 (363) -++|||..-. ..-.+.....++++|++++++.+|||.+-+..- ++..+ ...++..+... ++|.+.|+ T Consensus 20 fg~~~g~l~~---~~~~eL~~~a~~~Al~dagi~~~dId~v~~G~~~~~~~~-----~~~ar~~~l~~glp~~~p~~~ve 91 (395) T 2ib8_A 20 IGSFLGSLSL---LPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEG-----QAPTRQAVLGAGLPISTPCTTIN 91 (395) T ss_dssp CEETTSTTTT---SCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTTSC-----SCHHHHHHHHTTCCTTCCEEEEE T ss_pred CCCCCCCCCC---CCHHHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCCC-----CHHHHHHHHHCCCCCCCCCEEEE T ss_conf 0578988689---999999999999999871949899399999707854534-----47999999977999788716884 Q ss_pred HHHHH Q ss_conf 36776 Q gi|254781038|r 119 HLEGH 123 (363) Q Consensus 119 H~~aH 123 (363) ..-+= T Consensus 92 ~aCaS 96 (395) T 2ib8_A 92 KVCAS 96 (395) T ss_dssp CGGGH T ss_pred CCCHH T ss_conf 50229 No 65 >16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A* Probab=64.98 E-value=3.7 Score=19.68 Aligned_cols=42 Identities=19% Similarity=0.457 Sum_probs=31.0 Q ss_pred CCCEEEEEHHHHHHHHHHHH-------------------HHHHHHHCCCEEEECCHHHCCCH Q ss_conf 55236541334587999999-------------------99999868988996287887725 Q gi|254781038|r 273 KQAVLVVSGGVASNHFIRAS-------------------LIDLCVLHGFRFVAPPARLCTDN 315 (363) Q Consensus 273 ~~~~lvv~GGVaaN~~LR~~-------------------l~~~~~~~~~~~~~P~~~~ctDN 315 (363) +...+++ ||+.||.+|..+ +.+.+++++.++++|..-.|.++ T Consensus 229 k~D~iii-gG~mantfL~a~G~~iG~sl~e~~~~~~a~~i~~~~~~~~~~i~lp~d~~v~~~ 289 (415) T 16pk_A 229 RIDYLLI-GGAMAYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTE 289 (415) T ss_dssp GCSEEEE-CTTHHHHHHHHHTCCCTTCCCCGGGHHHHHHHHHHHHHTTCEEECCSSEEEESS T ss_pred HCCEEEE-CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCEECCCC T ss_conf 4582454-518999999981985565423156689999999888864922626623011345 No 66 >1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 Probab=64.83 E-value=6.6 Score=17.96 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=45.8 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC-CCCHHHHHHHHHHHHHHHHHHHCCCC----CCCHH Q ss_conf 12187145599999999699999999998389822453687406-64301256779999999887514864----33303 Q gi|254781038|r 45 GHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTA-GPGLMGGLIVGLMTAKAISYVSHKPF----YAINH 119 (363) Q Consensus 45 ~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~-gPG~~~~L~vG~~~Ak~la~~~~~Pl----i~VnH 119 (363) ++|+|.... ..-.+.....++++|++++++.+|||.+.++. .|+... +.+.|+..+...++|. +.|+. T Consensus 15 gk~~g~l~~---~~~~eLa~~A~~~al~dagl~~~dID~v~~G~~~~~~~~----~~~~ar~~al~~Glp~~~pa~~V~~ 87 (401) T 1ulq_A 15 GKHGGALAS---VRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGED----NRNVARMALLLAGFPVEVAGCTVNR 87 (401) T ss_dssp EETTSTTTT---SCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCSSTT----TTTHHHHHHHHTTCCTTCEEEEEEC T ss_pred CCCCCCCCC---CCHHHHHHHHHHHHHHHCCCCHHHHCEEEEEECCCCCCC----CCHHHHHHHHHCCCCCCCCEEEEEC T ss_conf 079997789---999999999999999981959799498999947665544----0149999999769898765589835 Q ss_pred HHHHHHC Q ss_conf 6776530 Q gi|254781038|r 120 LEGHILT 126 (363) Q Consensus 120 ~~aH~~~ 126 (363) ..+=-.. T Consensus 88 aCaSG~~ 94 (401) T 1ulq_A 88 LCGSGLE 94 (401) T ss_dssp GGGHHHH T ss_pred CCCHHHH T ss_conf 2446999 No 67 >3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium} Probab=62.75 E-value=7.2 Score=17.71 Aligned_cols=62 Identities=19% Similarity=0.226 Sum_probs=39.7 Q ss_pred HHHHHHHHHHHH-HCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH Q ss_conf 969999999999-838982245368740-66430125677999999988751486433303677 Q gi|254781038|r 61 DVLDILIKQTLL-RANMQISDMDSIAVT-AGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEG 122 (363) Q Consensus 61 ~~l~~li~~~l~-~a~~~~~~id~Iavt-~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~a 122 (363) +.....++++|. .+++...|||.+.+. ..|+...+..++-..+-......++|.+-|+..-+ T Consensus 29 eL~~~a~~~al~rdagi~~~dID~v~~G~~~~~~~~g~~~ar~~al~~~~~~~~p~~~V~~aCa 92 (387) T 3goa_A 29 DLSAHLMRSLLARNPSLTAATLDDIYWGCVQQTLEQGFNIARNAALLAEIPHSVPAVTVNRLCG 92 (387) T ss_dssp HHHHHHHHHHHHHCTTSCGGGCCEEEEECSCCSBTTTTTHHHHHHHHTTCCTTSCCEEEECGGG T ss_pred HHHHHHHHHHHHHCCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCC T ss_conf 9999999999962799598999989999587645442419999999779998724689954564 No 68 >3h1q_A Ethanolamine utilization protein EUTJ; structural genomics, PSI-2, protein structure initiative; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-2901} Probab=61.90 E-value=7.4 Score=17.61 Aligned_cols=235 Identities=15% Similarity=0.144 Sum_probs=107.0 Q ss_pred CCCEEEEEECCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 88468875026022077887338888418988731133462121871455-99999999699999999998389822453 Q gi|254781038|r 4 IKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPE-VAARAHVDVLDILIKQTLLRANMQISDMD 82 (363) Q Consensus 4 ~~~~ILgIETScd~tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~-~A~~~H~~~l~~li~~~l~~a~~~~~~id 82 (363) ..++.+|||-=.-.|.+++.+ .++.+++......... + -|++-. .++. +.|-.+++++-...+.. +. T Consensus 26 ~~p~~vgIDlGTt~~~v~v~~---~~~~~~~~~~~~~~~l--~-~GvI~d~~~a~---~~l~~l~~~ae~~~g~~---i~ 93 (272) T 3h1q_A 26 PPPYKVGVDLGTADIVLVVTD---QEGIPVAGALKWASVV--K-DGLVVDYIGAI---QIVRELKAKVERLLGSE---LF 93 (272) T ss_dssp CSCCEEEEECCSSEEEEEEEC---TTCCEEEEEEEECCCC--B-TTBCTTHHHHH---HHHHHHHHHHHHHSSSC---CC T ss_pred CCCCEEEEECCCCCEEEEEEC---CCCCEEEEEEEECCCC--C-CCEEECHHHHH---HHHHHHHHHHHHHCCCC---CC T ss_conf 888679998899858999999---9998897754444478--7-88796589999---99999999999874998---88 Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEC Q ss_conf 6874066430125677999999988751486433-303677653013225679984399970687479998375643000 Q gi|254781038|r 83 SIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYA-INHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRL 161 (363) Q Consensus 83 ~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~-VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~il 161 (363) .+.+|.=++.-..=|-.+.-| +..-+...+. ++.-.|-++...+.. -+.+-+-||+|.+..++.-. +. T Consensus 94 ~~vi~VP~~~t~~~r~ai~~a---a~~AGl~~~~li~Ep~AAA~~~g~~~-----~lVvDiGggttdvsv~~~g~---i~ 162 (272) T 3h1q_A 94 QAATAIPPGTVGRNAEACGHV---VAGAGLELVTLVDEPVAAARALGIND-----GIVVDIGGGTTGIAVIEKGK---IT 162 (272) T ss_dssp EEEEECCSCC---CTTHHHHH---HHHTTCEEEEEECHHHHHHHHHTCSS-----EEEEEECSSCEEEEEEETTE---EE T ss_pred CEEEEECCCCCHHHHHHHHHH---HHHCCCCEEECCCCHHHHHHHHCCCC-----EEEEECCCCEEEEEEECCCC---EE T ss_conf 689998998998999999999---99859976621277899998766774-----39999089827655311686---03 Q ss_pred CCCCCCCHHHHHHHH-HHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCH Q ss_conf 223363002388889-8852887610355666554057333458611106887542210245899999985112012106 Q gi|254781038|r 162 GTTIDDALGECFDKI-AKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDI 240 (363) Q Consensus 162 g~T~Dda~Ge~~DK~-ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~ 240 (363) -+....-.|+-||+. ++.+..+|.- -|++- .++| .+++. T Consensus 163 ~~~~~~~GG~~~d~~I~~~l~~~~~~---AE~iK-------------------~~l~------------------~~~e~ 202 (272) T 3h1q_A 163 ATFDEPTGGTHLSLVLAGSYKIPFEE---AETIK-------------------KDFS------------------RHREI 202 (272) T ss_dssp EECCBSCCHHHHHHHHHHHHTCCHHH---HHHHH-------------------HSST------------------THHHH T ss_pred EECCCCCCCHHHHHHHHHHHCHHHHH---HHHHC-------------------CCCC------------------CCCCC T ss_conf 41126779748999999985546999---86222-------------------2664------------------44432 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEE-CCHHHCC Q ss_conf 889999999999999999999999987621445523654133458799999999999868988996-2878877 Q gi|254781038|r 241 ADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVA-PPARLCT 313 (363) Q Consensus 241 ~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~-P~~~~ct 313 (363) .+++..+ ++.+.+.+++++..+ + ....+++.||.+....|++.+++... .++.. ..|.+|+ T Consensus 203 ~~ii~~~----~e~i~~~i~~~l~~~----~-~~~~VvL~GG~s~ipgi~~~l~~~~g---~~v~~~~nP~~av 264 (272) T 3h1q_A 203 MRVVRPV----IEKMALIVKEVIKNY----D-QTLPVYVVGGTAYLTGFSEEFSRFLG---KEVQVPIHPLLVT 264 (272) T ss_dssp HHHHHHH----HHHHHHHHHHHTTTS----C-SSCCEEEESGGGGSTTHHHHHHHHHS---SCCBCCSSGGGHH T ss_pred CCCCHHH----HHHHHHHHHHHHHHC----C-CCCCEEEECCCCCHHHHHHHHHHHHC---CCCCCCCCCCCEE T ss_conf 2102267----778888999999716----9-99869998981631219999999978---9974469941221 No 69 >2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, lipid metabolism, structural genomics, NPPSFA; 2.10A {Aquifex aeolicus VF5} Probab=61.79 E-value=7.4 Score=17.59 Aligned_cols=64 Identities=16% Similarity=0.102 Sum_probs=35.7 Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECC-CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC Q ss_conf 699999999998389822453687406-643012567799999998875148643330367765301 Q gi|254781038|r 62 VLDILIKQTLLRANMQISDMDSIAVTA-GPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTA 127 (363) Q Consensus 62 ~l~~li~~~l~~a~~~~~~id~Iavt~-gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~ 127 (363) .....++++|++++++.+|||.|.++. .|.......... .+..+ ..-+...+.+++..+-.+++ T Consensus 53 La~~Aa~~~l~~~~~~~~~Id~li~~t~~~~~~~~~~~~~-~~~~l-~~~~~~~~di~~~C~~~~~a 117 (309) T 2ebd_A 53 MATQAAKEALREANLSPEELDLIILATLTPQKRFPSTACL-VQAQL-KAKGVYAFDISAACSGFIYA 117 (309) T ss_dssp HHHHHHHHHHHHHTCCGGGCSEEEEECSSCSSSSSCHHHH-HHHHH-TCTTCEEEEEECGGGHHHHH T ss_pred HHHHHHHHHHHHCCCCHHHCEEEEEECCCCCCCCCHHHHH-HHHHC-CCCCCEEEEHHCCCHHHHHH T ss_conf 9999999988865589758649998526999889829999-87633-68994697620320069999 No 70 >1ltk_A Phosphoglycerate kinase; PGK, glycolysis, glycerol, open conformation, ADP complex, selenomethionine, transferase; HET: AMP; 3.00A {Plasmodium falciparum} SCOP: c.86.1.1 Probab=58.85 E-value=4.7 Score=18.96 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=29.0 Q ss_pred CCCEEEEEHHHHHHHHHHH--------------------HHHHHHHHCCCEEEECCHHHCCCH Q ss_conf 5523654133458799999--------------------999999868988996287887725 Q gi|254781038|r 273 KQAVLVVSGGVASNHFIRA--------------------SLIDLCVLHGFRFVAPPARLCTDN 315 (363) Q Consensus 273 ~~~~lvv~GGVaaN~~LR~--------------------~l~~~~~~~~~~~~~P~~~~ctDN 315 (363) +...+++ ||+.+|.+|+. .+.+.+++++.+++.|..-.|.|+ T Consensus 238 k~D~iii-gG~~antfL~a~~g~~ig~s~~e~~~~~~a~~i~~~ak~~~~~i~lP~d~~~~~~ 299 (425) T 1ltk_A 238 KVDRMII-GGGMAYTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQIFLPVDFKIADN 299 (425) T ss_dssp TCSEEEE-ESSHHHHHHHHHHCCCCTTSCCCTTGGGTHHHHHHHHHHTTCEEECCSEEEEESS T ss_pred HCCEEEE-CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECC T ss_conf 2472896-4279999999703886685332466779999999999862995345676376204 No 71 >1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C* Probab=58.18 E-value=6.4 Score=18.06 Aligned_cols=120 Identities=16% Similarity=0.202 Sum_probs=59.6 Q ss_pred HHHHHHHHHHHHH-HCCCCCCCCCEEEECC-CCCHHHHHHHHHHHHHHHHHHH----CCCCCCCHHHHHHHHCCC----- Q ss_conf 9969999999999-8389822453687406-6430125677999999988751----486433303677653013----- Q gi|254781038|r 60 VDVLDILIKQTLL-RANMQISDMDSIAVTA-GPGLMGGLIVGLMTAKAISYVS----HKPFYAINHLEGHILTAR----- 128 (363) Q Consensus 60 ~~~l~~li~~~l~-~a~~~~~~id~Iavt~-gPG~~~~L~vG~~~Ak~la~~~----~~Pli~VnH~~aH~~~~~----- 128 (363) .+.....++++|. .++++.+|||.+-+.. .|+...+-. .++..+... .+|.+-|+..-+=-..+. T Consensus 31 ~eL~~~a~~~al~rdagl~~~dId~v~~G~~~~~~~~g~~----~ar~~al~~g~~~~~p~~~v~~aCaSg~~Ai~~A~~ 106 (390) T 1wdk_C 31 EDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTLEQGWN----IARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQ 106 (390) T ss_dssp HHHHHHHHHHHHHHCTTSCGGGEEEEEEECSSBSBTTTTT----HHHHHHTTSSSCTTSEEEEEECGGGHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCHHHCCEEEEEECCCCCCCCCH----HHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHH T ss_conf 9999999999998658959899898999964652223230----999999955998886668972422589999999975 Q ss_pred -CCCCCCCCCEEEEEECCCEE----EEE-ECCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCH Q ss_conf -22567998439997068747----999-83756430002233630023888898852887610 Q gi|254781038|r 129 -LTDDIAFPYLVLLVSGGHTQ----ILL-VRDVAHYDRLGTTIDDALGECFDKIAKSLGLPYPG 186 (363) Q Consensus 129 -l~~~~~~PfL~LlvSGGhT~----l~~-~~~~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~yPg 186 (363) +... .+ -++++-|--++ +.. .............-....|+..+..++..++.+.. T Consensus 107 ~I~sG-~~--d~vla~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 167 (390) T 1wdk_C 107 AIMTG-NG--DVFVVGGVEHMGHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQ 167 (390) T ss_dssp HHHTT-SC--SEEEEEEEEETTTSCTTTTBCCCGGGGGTSCGGGGSHHHHHHHHHHHHTCCHHH T ss_pred HHCCC-CC--CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHH T ss_conf 52189-86--378884100146665444556565544334444564788899999996877778 No 72 >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain DSM 12444, SGX, transferase, structural genomics; 2.50A {Novosphingobium aromaticivorans DSM12444} Probab=57.91 E-value=8.6 Score=17.15 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=34.2 Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHH-CCCHHHHHHHHH Q ss_conf 552365413345879999999999986898899628788-772589999999 Q gi|254781038|r 273 KQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARL-CTDNAVMIAWAA 323 (363) Q Consensus 273 ~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~-ctDNAaMIA~ag 323 (363) ..+.++++||.+.|..+.+.+.+... +.++..++... +.=-|||+|..+ T Consensus 387 ~~~~i~~~GG~sks~~~~Qi~Advl~--g~~V~~~~~~e~talGAAlla~~~ 436 (482) T 3h6e_A 387 STGRILVEGRFAEADVFVRALASLRP--DCAVYTANAHNDVSFGALRLIDPG 436 (482) T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHST--TSEEEEESSCCCTTGGGHHHHCTT T ss_pred CCCEEEEECCCHHCHHHHHHHHHHCC--CCEEEECCCCCHHHHHHHHHHHHH T ss_conf 99869998986336999999998639--987990797637999999998723 No 73 >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide- binding, phosphoprotein, polymorphism; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3fzh_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 1ngh_A* 1ngd_A* 1ngf_A* 1bup_A* 1nga_A* ... Probab=55.58 E-value=9.4 Score=16.89 Aligned_cols=197 Identities=14% Similarity=0.102 Sum_probs=87.3 Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHCCCCCCC----CCCCCEEEEEECCCEEEEEECC Q ss_conf 453687406643012567799999998875148643-33036776530132256----7998439997068747999837 Q gi|254781038|r 80 DMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFY-AINHLEGHILTARLTDD----IAFPYLVLLVSGGHTQILLVRD 154 (363) Q Consensus 80 ~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli-~VnH~~aH~~~~~l~~~----~~~PfL~LlvSGGhT~l~~~~~ 154 (363) .++.+.+|+=+..-..=|-.+.-| |...+.+.+ =|+.-+|=++.-..... .+-.+|.+=+-||||.+-+++- T Consensus 157 ~~~~~VitVP~~~~~~~r~~l~~A---a~~AG~~~~~li~Ep~AAAl~~~~~~~~~~~~~~~vlVvD~GggT~Disv~~~ 233 (404) T 3i33_A 157 KVHSAVITVPAYFNDSQRQATKDA---GTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTI 233 (404) T ss_dssp CCCEEEEEECTTCCHHHHHHHHHH---HHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEE T ss_pred CCCEEEEEECCCCCHHHHHHHHHH---HHHCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEE T ss_conf 987599998998999999999999---99869986899702899999863531245789838999994899099999999 Q ss_pred -CCCCEECCCCCCCC-HHHHHHHH-HHHC--------CCCC-CHHHHHHHHHHHCC--------CCCCCCCCHHCCCCCC Q ss_conf -56430002233630-02388889-8852--------8876-10355666554057--------3334586111068875 Q gi|254781038|r 155 -VAHYDRLGTTIDDA-LGECFDKI-AKSL--------GLPY-PGGVEIEKAALMGD--------GKRFKFPCPLVQGTLC 214 (363) Q Consensus 155 -~~~~~ilg~T~Dda-~Ge~~DK~-ar~L--------gl~y-PgGp~ie~~A~~g~--------~~~~~~P~p~~~~~~~ 214 (363) ...+++++..-|.. -|+.||+. +..+ +... +.-..+.++..... .....+..+... .+. T Consensus 234 ~~~~~~v~a~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~aK~~Ls~~~~~~i~~~~l~-~~~ 312 (404) T 3i33_A 234 EDGIFEVKSTAGDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLY-EGV 312 (404) T ss_dssp ETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEE-TTE T ss_pred ECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC-CCC T ss_conf 5998999996599872689999999999999987874888881999999999999999985478985589942445-897 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHH Q ss_conf 42210245899999985112012106889999999999999999999999987621445523654133458799999999 Q gi|254781038|r 215 DFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLI 294 (363) Q Consensus 215 dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~ 294 (363) ||+.+ ....+..+++..+-+.+.+. ++++++... .....+..+++.||-+...+||+.++ T Consensus 313 d~~~~---------------itr~~fe~~~~~~~~~i~~~----i~~~l~~a~-~~~~~i~~V~LvGG~sr~P~v~~~l~ 372 (404) T 3i33_A 313 DFYTS---------------ITRARFEELNADLFRGTLEP----VEKALRDAK-LDKGQIQEIVLVGGSTRIPKIQKLLQ 372 (404) T ss_dssp EEEEE---------------EEHHHHHHHTHHHHHHTHHH----HHHHHHHHT-CCGGGCCEEEEESGGGGCHHHHHHHH T ss_pred CEEEE---------------ECHHHHHHHHHHHHHHHHHH----HHHHHHHCC-CCHHHCCEEEEECCHHCHHHHHHHHH T ss_conf 33899---------------71999999999999999999----999999759-98778998999893003278999999 Q ss_pred HHHHHC Q ss_conf 999868 Q gi|254781038|r 295 DLCVLH 300 (363) Q Consensus 295 ~~~~~~ 300 (363) +..... T Consensus 373 ~~f~~~ 378 (404) T 3i33_A 373 DFFNGK 378 (404) T ss_dssp HHTTTC T ss_pred HHCCCC T ss_conf 971999 No 74 >3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa} Probab=55.41 E-value=9.5 Score=16.88 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=38.0 Q ss_pred CCHHHHHHHH------HHHHHHHHHHHHHCCCCCCCCCEEEECCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 4559999999------9699999999998389822453687406643-0125677999999988751486433303 Q gi|254781038|r 51 VPEVAARAHV------DVLDILIKQTLLRANMQISDMDSIAVTAGPG-LMGGLIVGLMTAKAISYVSHKPFYAINH 119 (363) Q Consensus 51 ~P~~A~~~H~------~~l~~li~~~l~~a~~~~~~id~Iavt~gPG-~~~~L~vG~~~Ak~la~~~~~Pli~VnH 119 (363) .|..+.|... +.-....+++|++++++.+|||+|-+..-.| ..|++ ....++.|.+.-+++.+.++. T Consensus 96 ~~~~~~r~~~~~~~a~dLa~~Aa~kAL~~Agi~p~dId~lI~~T~T~~~~P~~--a~~v~~~LGl~~~~~~~~i~~ 169 (465) T 3e1h_A 96 PPTVKELHEVFMSDGVPLAVEASRKAMAEARLVPAQITHMVSTTCTDSANPGY--DHYVAKELGLSDRLEKVLLHG 169 (465) T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCGGGCCEEEEECSSCCCSSCH--HHHHHHHHTCCTTCEEEEECS T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEEECCCCCCCH--HHHHHHHHCCCCCCEEEECCC T ss_conf 99999999999999999999999999997599988978579983089999988--999999847899800331526 No 75 >1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycolysis, mutant, permutation, permuted sequence, protein folding; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1 Probab=55.17 E-value=5.5 Score=18.48 Aligned_cols=14 Identities=7% Similarity=0.136 Sum_probs=10.0 Q ss_pred HHCCCHHHHHHHHH Q ss_conf 88772589999999 Q gi|254781038|r 310 RLCTDNAVMIAWAA 323 (363) Q Consensus 310 ~~ctDNAaMIA~ag 323 (363) ..||=-+|++-|.. T Consensus 318 hVSTGGGA~Le~Le 331 (416) T 1fw8_A 318 HVSTGGGASLELLE 331 (416) T ss_dssp EECSCSHHHHHHHT T ss_pred EEECCHHHHHHHHC T ss_conf 69477799999987 No 76 >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} Probab=54.77 E-value=9.7 Score=16.81 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=27.9 Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHH Q ss_conf 55236541334587999999999998689889962878 Q gi|254781038|r 273 KQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPAR 310 (363) Q Consensus 273 ~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~ 310 (363) +...++.+=|.-++..++++|.+.+++.+.++++|+-- T Consensus 74 G~~vvv~S~galad~~~~~~L~~~A~~~g~~l~i~sGa 111 (236) T 2dc1_A 74 GIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGA 111 (236) T ss_dssp TCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTT T ss_pred CCCEEEEECHHHCCCHHHHHHHHHHHHCCCCEEECCCH T ss_conf 99799962216317349999999998658837844200 No 77 >1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1 Probab=54.31 E-value=6.7 Score=17.89 Aligned_cols=42 Identities=19% Similarity=0.367 Sum_probs=28.8 Q ss_pred CCCEEEEEHHHHHHHHHH-------------------HHHHHHHHHCCCEEEECCHHHCCCH Q ss_conf 552365413345879999-------------------9999999868988996287887725 Q gi|254781038|r 273 KQAVLVVSGGVASNHFIR-------------------ASLIDLCVLHGFRFVAPPARLCTDN 315 (363) Q Consensus 273 ~~~~lvv~GGVaaN~~LR-------------------~~l~~~~~~~~~~~~~P~~~~ctDN 315 (363) +...++ .||+.||.+|. +.+.+.+++++.++++|-...|..+ T Consensus 210 k~D~ii-igG~~antfL~a~G~~iG~s~~e~~~~~~~~~i~~~a~~~~~~i~lp~d~~v~~~ 270 (398) T 1vpe_A 210 KADRIL-IGGAMMFTFLKALGKEVGSSRVEEDKIDLAKELVEKAKEKGVEIVLPVDAVIAQK 270 (398) T ss_dssp TCSEEE-ECTTTHHHHHHHTSCCCTTSCCCGGGHHHHHHHHHHHHHTTCEEECCSEEEEESS T ss_pred HHCEEE-ECCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECC T ss_conf 604202-2629999999977987675435512478999999977752986678842798534 No 78 >2xnk_A DNA topoisomerase 2-binding protein 1; phosphorylation, protein-protein interaction; HET: DNA; 2.60A {Homo sapiens} PDB: 2xnh_A* Probab=53.67 E-value=10 Score=16.69 Aligned_cols=58 Identities=19% Similarity=0.118 Sum_probs=27.7 Q ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC-CCCCCHHCCCCCCCCCCCHHHH Q ss_conf 3630023888898852887610355666554057333-4586111068875422102458 Q gi|254781038|r 165 IDDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKR-FKFPCPLVQGTLCDFSFSGLKT 223 (363) Q Consensus 165 ~Dda~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~-~~~P~p~~~~~~~dFSFSGLkT 223 (363) +|+--|++||.+-+ +|..-.|-|.+..+++.+.+-. ...|.+-.--.++.++|||+.. T Consensus 62 ~~~f~~~~f~~l~~-~~~~i~gp~~l~~~~~~~~~lp~~~~p~~~~~l~g~~i~~sg~~~ 120 (292) T 2xnk_A 62 CDPFSGVVFDHLKK-LGCRIVGPQVVIFCMHHQRCVPRAEHPVYNMVMSDVTISCTSLEK 120 (292) T ss_dssp CSSSCSHHHHHHHH-HTCCEECHHHHHHHHHTTCCCCCCSSCBCCCTTTTCEEEEESCCH T ss_pred ECCCCCHHHHHHHH-CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCH T ss_conf 57658669999998-699416869999999808989999987663036996899848998 No 79 >3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} Probab=53.15 E-value=10 Score=16.63 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=20.9 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCE--EEECCCC Q ss_conf 996999999999983898224536--8740664 Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMDS--IAVTAGP 90 (363) Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id~--Iavt~gP 90 (363) .+.....+.++++.+++...+++. ++|-.|- T Consensus 75 ~~~~l~aa~~Al~dAGl~~~~~~~~r~Gv~~Gs 107 (413) T 3o04_A 75 THYAIASAEMAVQDSGLVIDDSNANRVGVWIGS 107 (413) T ss_dssp HHHHHHHHHHHHHHHTCCCCTTTGGGEEEEEEC T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEE T ss_conf 999999999999850988443688877999996 No 80 >1i88_A CHS2, chalcone synthase 2; polyketide synthase, transferase; 1.45A {Medicago sativa} SCOP: c.95.1.2 c.95.1.2 PDB: 1i89_A 1i86_A 1i8b_A 1bi5_A 1cml_A* 1d6f_A* 1chw_A* 1cgz_A* 1cgk_A* 1bq6_A* 1jwx_A 1d6i_A 1d6h_A* 1u0v_A 1u0w_A* 1z1e_A* 1z1f_A* Probab=52.98 E-value=10 Score=16.62 Aligned_cols=56 Identities=13% Similarity=0.076 Sum_probs=32.9 Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 699999999998389822453687406643-0125677999999988751486433303 Q gi|254781038|r 62 VLDILIKQTLLRANMQISDMDSIAVTAGPG-LMGGLIVGLMTAKAISYVSHKPFYAINH 119 (363) Q Consensus 62 ~l~~li~~~l~~a~~~~~~id~Iavt~gPG-~~~~L~vG~~~Ak~la~~~~~Pli~VnH 119 (363) .-....+++|++++++.+|||+|-+....+ ..|+. ....++.|...-+.....+++ T Consensus 105 la~~Aa~~aL~~ag~~~~dId~lI~~t~t~~~~P~~--a~~v~~~Lgl~~~~~~~~~~~ 161 (389) T 1i88_A 105 LGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGA--DYQLTKLLGLRPYVKRYMMYQ 161 (389) T ss_dssp HHHHHHHHHHHHHCSCGGGCCEEEEEESSCCCSSCH--HHHHHHHHTCCTTCEEEEEES T ss_pred HHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCH--HHHHHHHHCCCCCCCEEECCC T ss_conf 999999999998499988986999946589988889--999999967886664200026 No 81 >1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 Probab=51.03 E-value=6.6 Score=17.95 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=28.7 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCE Q ss_conf 999999887514864333036776530132256799843999706874799983756430 Q gi|254781038|r 100 LMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYD 159 (363) Q Consensus 100 ~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~~ 159 (363) .-.|+.|+..++.|+.-+....+...-.. ...++.. ++++.++..-|. T Consensus 74 ~~~a~~L~~~l~~~v~f~~d~~g~~~~~~-i~~l~~g-----------~i~lLENvRf~~ 121 (394) T 1php_A 74 DAVAKRLGELLERPVAKTNEAVGDEVKAA-VDRLNEG-----------DVLLLENVRFYP 121 (394) T ss_dssp HHHHHHHHHHHTSCCEECSCSSSHHHHHH-HHTCCTT-----------CEEECCCGGGSH T ss_pred HHHHHHHHHHHCCCCCEECCCCCHHHHHH-HHHCCCC-----------CEEEHHHHHHCC T ss_conf 99999999864556410013356779999-9616888-----------686337577575 No 82 >1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B* Probab=50.45 E-value=11 Score=16.35 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=32.5 Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC Q ss_conf 45368740664301256779999999887514864333036776530 Q gi|254781038|r 80 DMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILT 126 (363) Q Consensus 80 ~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~ 126 (363) +.|+|-.+.|||-+.-...-+...|.+- ..++|++|| +-||=+. T Consensus 231 ~pDgi~lS~GPG~P~~~~~~i~~i~~~~-~~~~PilGI--CLGhQll 274 (379) T 1a9x_B 231 NPDGIFLSNGPGDPAPCDYAITAIQKFL-ETDIPVFGI--CLGHQLL 274 (379) T ss_dssp CCSEEEECCCSBCSTTCHHHHHHHHHHT-TSCCCEEEE--THHHHHH T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHH-HCCCCEEEE--EHHHHHH T ss_conf 9998996699999515568999999998-169988997--4778999 No 83 >1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli} Probab=50.31 E-value=11 Score=16.34 Aligned_cols=29 Identities=21% Similarity=0.492 Sum_probs=24.7 Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHHCCCEE Q ss_conf 36541334587999999999998689889 Q gi|254781038|r 276 VLVVSGGVASNHFIRASLIDLCVLHGFRF 304 (363) Q Consensus 276 ~lvv~GGVaaN~~LR~~l~~~~~~~~~~~ 304 (363) -+|++.|++..+.|..++++.+++.++.+ T Consensus 25 lvvC~sGigTS~ll~~ki~~~~~~~gi~~ 53 (113) T 1tvm_A 25 IVACGGAVATSTMAAEEIKELCQSHNIPV 53 (113) T ss_dssp EEESCSCSSHHHHHHHHHHHHHHHTTCCE T ss_pred EEECCCCHHHHHHHHHHHHHHHHHCCCCC T ss_conf 99999978999999999999999839874 No 84 >1tqy_B Actinorhodin polyketide putative beta-ketoacyl synthase 2; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Probab=48.95 E-value=12 Score=16.20 Aligned_cols=22 Identities=9% Similarity=-0.020 Sum_probs=16.3 Q ss_pred HHHHHHHHHHHHHCCCCCCCCC Q ss_conf 9699999999998389822453 Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMD 82 (363) Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id 82 (363) +.......++++.+++...+++ T Consensus 81 ~~~l~aa~~Al~dAg~~~~~~~ 102 (415) T 1tqy_B 81 RLALTAADWALQDAKADPESLT 102 (415) T ss_dssp HHHHHHHHHHHHHTTCCGGGSC T ss_pred HHHHHHHHHHHHHCCCCCHHCC T ss_conf 9999999999997488600015 No 85 >1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A* Probab=48.31 E-value=8.5 Score=17.19 Aligned_cols=21 Identities=19% Similarity=0.086 Sum_probs=12.8 Q ss_pred HHHHHHHHHHHCCCCCCCHHH Q ss_conf 999999887514864333036 Q gi|254781038|r 100 LMTAKAISYVSHKPFYAINHL 120 (363) Q Consensus 100 ~~~Ak~la~~~~~Pli~VnH~ 120 (363) .-.|+.|+..++.|+.=+.-. T Consensus 77 ~pva~~L~~~l~~~V~f~~d~ 97 (415) T 1qpg_A 77 APVAKELQSLLGKDVTFLNDC 97 (415) T ss_dssp HHHHHHHHHHHTSCCEEESCS T ss_pred HHHHHHHHHHHCCCEEECCCC T ss_conf 999999999878974970676 No 86 >3p4i_A Acetate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, no pathogenic species; 2.35A {Mycobacterium avium} Probab=46.52 E-value=13 Score=15.95 Aligned_cols=70 Identities=16% Similarity=0.267 Sum_probs=40.9 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHH-HHHHHHHHHHHHCCC------------------------EEEE Q ss_conf 999999999999998762144552365413345879-999999999986898------------------------8996 Q gi|254781038|r 252 VRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNH-FIRASLIDLCVLHGF------------------------RFVA 306 (363) Q Consensus 252 ~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~-~LR~~l~~~~~~~~~------------------------~~~~ 306 (363) ++..+-++.+.+-.+-... .++..+|+.||++-|+ .+|+++-+-++-.|+ +++. T Consensus 295 ~d~~~y~i~K~IGa~aa~L-G~vDaIVfTGGIge~s~~vR~~v~~~l~~lGi~lD~~~N~~~~~~~~~is~~~s~v~v~V 373 (392) T 3p4i_A 295 YSVFTHRLRKYIGAYLAVL-GHTDVISFTAGIGENDAAVRRDAVSGMEELGIVLDERRNLPGAKGARQISADDSPITVLV 373 (392) T ss_dssp HHHHHHHHHHHHHHHHHHH-SSCCEEEEEHHHHTTCHHHHHHHHTTCGGGTCCBCTTTTCTTCCSSEECBCTTCSSEEEE T ss_pred HHHHHHHHHHHHHHHHHHH-CCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEECHHHHCCCCCCCCEEECCCCCCCEEE T ss_conf 9999999999999999973-799989987841236699999998422441756557661003578874507999740899 Q ss_pred CCHHHCCCHHHHHHHHHHHH Q ss_conf 28788772589999999999 Q gi|254781038|r 307 PPARLCTDNAVMIAWAALER 326 (363) Q Consensus 307 P~~~~ctDNAaMIA~ag~~~ 326 (363) -| ||.-.|||.-.+.. T Consensus 374 ip----tnEe~~iA~~~~~l 389 (392) T 3p4i_A 374 VP----TNEELAIARDCVRV 389 (392) T ss_dssp CC----CCHHHHHHHHHHHH T ss_pred EC----CCHHHHHHHHHHHH T ss_conf 88----80799999999998 No 87 >2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid synthesis, fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A Probab=46.28 E-value=13 Score=15.92 Aligned_cols=21 Identities=0% Similarity=-0.208 Sum_probs=14.6 Q ss_pred HHHHHHHHHHHHHHCCCCCCC Q ss_conf 996999999999983898224 Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISD 80 (363) Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~ 80 (363) .........++++++++.... T Consensus 98 ~~lal~aa~~Al~dAG~~~~~ 118 (438) T 2iwz_A 98 TIMAIGAAELAMKDSGWHPQS 118 (438) T ss_dssp HHHHHHHHHHHHHHHTCCCCS T ss_pred HHHHHHHHHHHHHHCCCCCHH T ss_conf 999999999999971898101 No 88 >1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A Probab=46.19 E-value=13 Score=15.91 Aligned_cols=55 Identities=9% Similarity=0.040 Sum_probs=32.4 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCE-EEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 96999999999983898224536-8740664301256779999999887514864333 Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMDS-IAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAI 117 (363) Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id~-Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~V 117 (363) +.-....+++|++++++.+|||+ |.+|.-+-..|++ ....++.|.+.-++..+.+ T Consensus 127 ~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~P~~--a~~l~~~LGL~~~~~~~~~ 182 (413) T 1xes_A 127 RLAKEAAEKAIQEWGQSKSGITHLIFCSTTTPDLPGA--DFEVAKLLGLHPSVKRVGV 182 (413) T ss_dssp HHHHHHHHHHHHHHCSCGGGCCEEEEEESCCCEESCH--HHHHHHHHTCCTTCEEEEE T ss_pred HHHHHHHHHHHHHCCCCHHHCCEEEEEEECCCCCCCH--HHHHHHHHCCCCCCCEEEC T ss_conf 9999999999998198988999999992089988867--9999998478877301112 No 89 >3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A Probab=44.25 E-value=14 Score=15.71 Aligned_cols=21 Identities=14% Similarity=-0.080 Sum_probs=15.0 Q ss_pred HHHHHHHHHHHHHHCCCCCCC Q ss_conf 996999999999983898224 Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISD 80 (363) Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~ 80 (363) .+.......++|+.+++...+ T Consensus 88 ~~~~l~aa~~Al~dAGl~~~~ 108 (428) T 3kzu_A 88 IVYAVGAADQALDDAGWHPEN 108 (428) T ss_dssp HHHHHHHHHHHHHHHTCCCCS T ss_pred HHHHHHHHHHHHHHCCCCCCC T ss_conf 999999999999975998211 No 90 >3euo_A Type III pentaketide synthase; alpha helix, acyltransferase, transferase; 1.75A {Neurospora crassa} PDB: 3eut_A* 3euq_A* Probab=44.18 E-value=14 Score=15.71 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=38.2 Q ss_pred CCHHHHHHHH------HHHHHHHHHHHHHCCCCCCCCCEEEECCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 4559999999------9699999999998389822453687406643-0125677999999988751486433303 Q gi|254781038|r 51 VPEVAARAHV------DVLDILIKQTLLRANMQISDMDSIAVTAGPG-LMGGLIVGLMTAKAISYVSHKPFYAINH 119 (363) Q Consensus 51 ~P~~A~~~H~------~~l~~li~~~l~~a~~~~~~id~Iavt~gPG-~~~~L~vG~~~Ak~la~~~~~Pli~VnH 119 (363) .|..+.|++. +.-....+++|++++++.+|||+|-+....+ ..++. ....+..+...-+...+.+++ T Consensus 67 ~~~~~~~~~~~~~~~~dma~~Aa~~aL~~ag~~p~dId~li~~t~t~~~~p~~--aa~v~~~l~~~~~~~~~~~~~ 140 (379) T 3euo_A 67 PPTVKELHEVFMSDGVPLAVEASRKAMAEARLVPAQITHMVSTTCTDSANPGY--DHYVAKELGLSDRLEKVLLHG 140 (379) T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCGGGCCEEEEECSSCCCSSCH--HHHHHHHHTCCTTCEEEEECS T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCH--HHHHHHHHCCCCCEEEEECCC T ss_conf 76678887777768999999999999998599989987789942037878987--999999854478756873405 No 91 >2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} Probab=44.13 E-value=14 Score=15.70 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=16.5 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 99699999999998389822453 Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMD 82 (363) Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id 82 (363) .+......++++..+++...+++ T Consensus 99 ~~~al~aa~eAl~dAGl~~~~~~ 121 (437) T 2gqd_A 99 TQYAIVAAREAVKDAQLDINENT 121 (437) T ss_dssp HHHHHHHHHHHHHHHTCCCCTTT T ss_pred HHHHHHHHHHHHHHCCCCCCCCC T ss_conf 99999999999996575412578 No 92 >1ee0_A 2-pyrone synthase; polyketide synthase, thiolase fold, transferase; HET: CAA; 2.05A {Gerbera hybrid cultivar} SCOP: c.95.1.2 c.95.1.2 PDB: 1qlv_A Probab=43.73 E-value=14 Score=15.66 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=31.2 Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 699999999998389822453687406643-0125677999999988751486433303 Q gi|254781038|r 62 VLDILIKQTLLRANMQISDMDSIAVTAGPG-LMGGLIVGLMTAKAISYVSHKPFYAINH 119 (363) Q Consensus 62 ~l~~li~~~l~~a~~~~~~id~Iavt~gPG-~~~~L~vG~~~Ak~la~~~~~Pli~VnH 119 (363) .-....+++|++++++.+|||+|-+..-.| ..|++ ....++.|.+.-++..+.+++ T Consensus 110 La~~Aa~~aL~~ag~~~~dId~lI~~T~t~~~~P~~--a~~l~~~LGl~~~~~~~~~~~ 166 (402) T 1ee0_A 110 LGKEAAVKAIDEWGLPKSKITHLIFCTTAGVDMPGA--DYQLVKLLGLSPSVKRYMLYQ 166 (402) T ss_dssp HHHHHHHHHHHHHCSCGGGCCEEEEECSSCCEESCH--HHHHHHHHTCCTTCEEEEECS T ss_pred HHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCH--HHHHHHHHCCCCCCCEECCCC T ss_conf 999999999998499989999999995799988867--999999837986621100037 No 93 >1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A Probab=42.94 E-value=15 Score=15.58 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=17.2 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 99699999999998389822453 Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMD 82 (363) Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id 82 (363) .+.......++|+.++++..+.+ T Consensus 94 ~~~~l~aa~eAl~dAGl~~~~~~ 116 (430) T 1ox0_A 94 SLYALYAAQEAVNHANLDVEALN 116 (430) T ss_dssp HHHHHHHHHHHHHHTTCCTTTSC T ss_pred HHHHHHHHHHHHHHCCCCCCCCC T ss_conf 99999999999986599820146 No 94 >1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, alpha-beta-alpha-beta-alpha fold; HET: 15P; 2.22A {Streptomyces coelicolor A3} SCOP: c.95.1.2 c.95.1.2 Probab=42.33 E-value=15 Score=15.52 Aligned_cols=46 Identities=17% Similarity=0.175 Sum_probs=31.2 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCH-HHHHHHHHHHHHHHHHHHCC Q ss_conf 96999999999983898224536874066430-12567799999998875148 Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMDSIAVTAGPGL-MGGLIVGLMTAKAISYVSHK 112 (363) Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~-~~~L~vG~~~Ak~la~~~~~ 112 (363) +......+++|++++++.+|||+|-+...+++ +|+ +|-.+...+++ T Consensus 86 ~la~~Aa~~aL~~ag~~~~dIdllI~~s~t~~~~P~------~a~~v~~~LGl 132 (382) T 1u0m_A 86 SRVPAVIQRALDDAELLATDIDVIIYVSCTGFMMPS------LTAWLINEMGF 132 (382) T ss_dssp HHHHHHHHHHHHHHTCCGGGCSEEEEECSSSCCSSC------HHHHHHHHTTC T ss_pred HHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCC------HHHHHHHHHCC T ss_conf 999999999999839898999899998679998888------89999998578 No 95 >3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans} Probab=40.78 E-value=16 Score=15.36 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=23.8 Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHHCCCE Q ss_conf 3654133458799999999999868988 Q gi|254781038|r 276 VLVVSGGVASNHFIRASLIDLCVLHGFR 303 (363) Q Consensus 276 ~lvv~GGVaaN~~LR~~l~~~~~~~~~~ 303 (363) .++++.|++....++.++++.++++++. T Consensus 22 lvvCgsGigTS~ml~~kik~~l~e~gi~ 49 (110) T 3czc_A 22 LTACGNGMGSSMVIKMKVENALRQLGVS 49 (110) T ss_dssp EEECCCCHHHHHHHHHHHHHHHHHTTCC T ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 9999997029999999999999985997 No 96 >2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* 2p9q_A* 2paa_A* Probab=40.75 E-value=16 Score=15.36 Aligned_cols=21 Identities=10% Similarity=-0.036 Sum_probs=12.9 Q ss_pred HHHHHHHHHHHCCCCCCCHHH Q ss_conf 999999887514864333036 Q gi|254781038|r 100 LMTAKAISYVSHKPFYAINHL 120 (363) Q Consensus 100 ~~~Ak~la~~~~~Pli~VnH~ 120 (363) .-.|+.|+..++.|+.=+.-. T Consensus 78 ~~va~~L~~~L~~~V~fv~d~ 98 (416) T 2wzb_A 78 EPVAVELKSLLGKDVLFLKDC 98 (416) T ss_dssp HHHHHHHHHHHTSCCEECSCS T ss_pred HHHHHHHHHHHCCCEEECCCC T ss_conf 999999999768970764753 No 97 >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* Probab=40.28 E-value=3.2 Score=20.14 Aligned_cols=54 Identities=9% Similarity=0.048 Sum_probs=30.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHH Q ss_conf 688999999999999999999999998762144552365413345879999999 Q gi|254781038|r 240 IADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASL 293 (363) Q Consensus 240 ~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l 293 (363) ..+-...|-+.+...|..-........-...+.-.+.+++-.|.--|..+++.+ T Consensus 306 p~~AS~~fs~~l~~~l~~l~~~g~~~~~~~de~i~~a~~~~~G~i~~~~v~~~~ 359 (377) T 2vhw_A 306 PKTSTYALTNATMPYVLELADHGWRAACRSNPALAKGLSTHEGALLSERVATDL 359 (377) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHTTEEEETTEECCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHCCEEEECCEECCHHHHHHC T ss_conf 999999999999999999972304332545958867759989999699999971 No 98 >2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A Probab=39.85 E-value=16 Score=15.26 Aligned_cols=100 Identities=19% Similarity=0.149 Sum_probs=47.4 Q ss_pred CCEEEEEECCCH--HHEEE-EEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 846887502602--20778-873388884189887311334621218714559999999969999999999838982245 Q gi|254781038|r 5 KKTVIGIETSCD--ETAVA-VVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDM 81 (363) Q Consensus 5 ~~~ILgIETScd--~tsva-iv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a~~~~~~i 81 (363) -.+|-|+|.|.. +..+| ++-.+-.+.+++...... ......| +|-.=++. -++ .+-+++++-.. .. T Consensus 36 ~~~VaGvDvsy~~~~~~~A~~Vv~~~~~~~~v~~~~~~-~~~~~PY---IPG~LafR---E~P-~ll~al~~L~~---~P 104 (225) T 2w36_A 36 PEYVAGVALSFPGKEEGLAVIVVLEYPSFKILEVVSER-GEITFPY---IPGLLAFR---EGP-LFLKAWEKLRT---KP 104 (225) T ss_dssp CSEEEEEEEEEEETTEEEEEEEEEETTTTEEEEEEEEE-EECCSCC---CTTCTHHH---HHH-HHHHHHTTCCS---CC T ss_pred CCEEEEEEEEECCCCCEEEEEEEEECCCCEEEEEEEEE-EECCCCC---CCCCEECC---HHH-HHHHHHHHCCC---CC T ss_conf 58899998587589935999999977995599999999-6325775---66411201---048-99999996578---99 Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH Q ss_conf 3687406643012567799999998875148643330 Q gi|254781038|r 82 DSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAIN 118 (363) Q Consensus 82 d~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~Vn 118 (363) |.|-|- |=|..-.= +...|--+...+++|-|||- T Consensus 105 dvilvD-G~G~~HPR--~~GlA~HlGv~l~~PtIGVA 138 (225) T 2w36_A 105 DVVVFD-GQGLAHPR--KLGIASHMGLFIEIPTIGVA 138 (225) T ss_dssp SEEEEE-SCSSSSTT--SCCHHHHHHHHHTSCEEEEE T ss_pred CEEEEC-CCEEECCC--CCCHHHEEEEECCCCEEEEE T ss_conf 999984-85333687--66442200342298876333 No 99 >1v6s_A Phosphoglycerate kinase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A Probab=38.65 E-value=12 Score=16.11 Aligned_cols=55 Identities=11% Similarity=0.006 Sum_probs=26.5 Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 69999999999838982245368740664301256779999999887514864333036 Q gi|254781038|r 62 VLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHL 120 (363) Q Consensus 62 ~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~ 120 (363) ...|.|+.++++ +-++-=++...-..|.--..+| ...|+.|+..++.++.-+... T Consensus 37 ~~lpTI~~l~~~-~akvvi~SHlGRPkg~~~~~SL---~~va~~L~~~L~~~v~~~~~~ 91 (390) T 1v6s_A 37 ESLPTLRHLLAG-GASLVLLSHLGRPKGPDPKYSL---APVGEALRAHLPEARFAPFPP 91 (390) T ss_dssp HHHHHHHHHHHT-TCEEEEECCCSCCSSCCGGGCS---HHHHHHHHHHCTTEEECCSCT T ss_pred HHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCCH---HHHHHHHHHHCCCCEEEECCC T ss_conf 999999999988-9989998058999998977368---999999997638761752145 No 100 >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* Probab=38.07 E-value=17 Score=15.08 Aligned_cols=44 Identities=14% Similarity=-0.059 Sum_probs=16.5 Q ss_pred EEEEEECCCEEEEEEC---CCCCCEECCCCC---CCCHHHHHHHHHHHCC Q ss_conf 3999706874799983---756430002233---6300238888988528 Q gi|254781038|r 138 LVLLVSGGHTQILLVR---DVAHYDRLGTTI---DDALGECFDKIAKSLG 181 (363) Q Consensus 138 L~LlvSGGhT~l~~~~---~~~~~~ilg~T~---Dda~Ge~~DK~ar~Lg 181 (363) +.+-+++..+..-++. ..+..-++++|- |....+-+-..|+.=| T Consensus 63 vVve~~~~~~~~~~~~~al~~g~~vv~~s~g~~~~~~~~~~l~~~a~~~~ 112 (253) T 1j5p_A 63 TVVECASPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSP 112 (253) T ss_dssp EEEECSCHHHHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCS T ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCC T ss_conf 99985880799999999997399799983642457315999999999729 No 101 >2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum} Probab=38.04 E-value=15 Score=15.49 Aligned_cols=15 Identities=0% Similarity=0.184 Sum_probs=11.1 Q ss_pred HHHHHHHHHHHCCCC Q ss_conf 023888898852887 Q gi|254781038|r 169 LGECFDKIAKSLGLP 183 (363) Q Consensus 169 ~Ge~~DK~ar~Lgl~ 183 (363) .=++++..+++||.+ T Consensus 113 l~~ai~~~~~~l~i~ 127 (341) T 2p0y_A 113 VFDAVQELSNMMQVD 127 (341) T ss_dssp HHHHHHHHHHHTTCS T ss_pred HHHHHHHHHHHHCCC T ss_conf 889999999985899 No 102 >3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus} Probab=37.73 E-value=17 Score=15.04 Aligned_cols=113 Identities=16% Similarity=0.214 Sum_probs=60.3 Q ss_pred HHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEE------------EEEECCCC--------CCEECCCCCC Q ss_conf 875148643330367765301322567998439997068747------------99983756--------4300022336 Q gi|254781038|r 107 SYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQ------------ILLVRDVA--------HYDRLGTTID 166 (363) Q Consensus 107 a~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~------------l~~~~~~~--------~~~ilg~T~D 166 (363) +..+.+|.- ++-.-|++++-|.++. -|+...||-=|+. +|+..+.. ..++.|.|.- T Consensus 351 ~~~lkip~~--QqP~ih~y~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (526) T 3iyk_A 351 MMKFKIPRA--QQPQIHVYSAPWDSDD--VFFFHCISHHHANESFFLGFDLSIDLVHYEDLTAHWHALGAAQTAAGRTLT 426 (526) T ss_pred HHCCCCCCC--CCCCCEEECCCCCCCC--EEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCHH T ss_conf 742268501--4998441068878772--789985257668861588761131124533446544336776205786679 Q ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 30023888898852887610355666554057333458611106887542210245899999985 Q gi|254781038|r 167 DALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICA 231 (363) Q Consensus 167 da~Ge~~DK~ar~Lgl~yPgGp~ie~~A~~g~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~ 231 (363) -|.-|+|.-.++.- ..+-.+-.++.+..... |+ .+....|+.||.-+++.+.+++.. T Consensus 427 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~ 483 (526) T 3iyk_A 427 EAYREFLNLAISNA---FGTQMHTRRLVRSKTVH----PI-YLGSLHYDISFSDLRGNAQRIVYD 483 (526) T ss_pred HHHHHHHHHHHCCC---CCCHHHHHHHHHCCCCC----CE-EECCCCCHHHHHHHHHHHHHHHCC T ss_conf 99999999985699---98378999998634679----81-222766440199999989978188 No 103 >1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis H37RV} SCOP: c.95.1.2 PDB: 1tee_A Probab=37.16 E-value=18 Score=14.99 Aligned_cols=56 Identities=11% Similarity=0.192 Sum_probs=34.9 Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECCCCCH-HHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 6999999999983898224536874066430-125677999999988751486433303 Q gi|254781038|r 62 VLDILIKQTLLRANMQISDMDSIAVTAGPGL-MGGLIVGLMTAKAISYVSHKPFYAINH 119 (363) Q Consensus 62 ~l~~li~~~l~~a~~~~~~id~Iavt~gPG~-~~~L~vG~~~Ak~la~~~~~Pli~VnH 119 (363) .-....+++|++++++.+|||.|-+...+|+ .|++ ....++-|...-++..+.++. T Consensus 116 La~~Aa~~aL~~ag~~~~dId~vI~~t~t~~~~P~~--a~~v~~~LGl~~~~~~~~i~~ 172 (393) T 1ted_A 116 LAVDVSKRALAGLPYRAAEIGLLVLATSTGFIAPGV--DVAIVKELGLSPSISRVVVNF 172 (393) T ss_dssp HHHHHHHHHHTTCCCCGGGEEEEEEEESSCCCSSCH--HHHHHHHHTCCTTCEEEEEES T ss_pred HHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCH--HHHHHHHHCCCCCEEEEECCC T ss_conf 999999999998499989998999988789989869--999999867998758987578 No 104 >2iir_A Acetate kinase; transferase; 3.30A {Thermotoga maritima} Probab=36.93 E-value=18 Score=14.96 Aligned_cols=74 Identities=20% Similarity=0.285 Sum_probs=47.1 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHH-HHHHHHHHHHHHHHHCCC-------------------------EE Q ss_conf 9999999999999998762144552365413345-879999999999986898-------------------------89 Q gi|254781038|r 251 VVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVA-SNHFIRASLIDLCVLHGF-------------------------RF 304 (363) Q Consensus 251 i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVa-aN~~LR~~l~~~~~~~~~-------------------------~~ 304 (363) +++..+.++.+.+-.+-.... ++..||+.||++ ....+|+++.+.++-.|+ ++ T Consensus 301 A~d~f~yri~k~IGa~aa~Lg-GvDaIVfTGGIgens~~vR~~i~~~l~~lGi~lD~~~N~~~~~~~~~~Is~~~s~v~v 379 (403) T 2iir_A 301 VLEIYDYRIAKYIGAYAAAMN-GVDAIVFTAGVGENSPITREDVCSYLEFLGVKLDKQKNEETIRGKEGIISTPDSRVKV 379 (403) T ss_dssp HHHHHHHHHHHHHHHHHHHHT-CCSEEEEEHHHHTTCHHHHHHHHHTTGGGTCCBCHHHHHHSCTTCCEECBCTTCSSEE T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCEEEECCCCCCCCHHHHHHHHHHCHHCCEEECHHHHHCCCCCCCCEECCCCCCCEE T ss_conf 999999999999999998757-9989998783235889999999841312156666777412358877666389997449 Q ss_pred EECCHHHCCCHHHHHHHHHHHHHHC Q ss_conf 9628788772589999999999984 Q gi|254781038|r 305 VAPPARLCTDNAVMIAWAALERMEA 329 (363) Q Consensus 305 ~~P~~~~ctDNAaMIA~ag~~~~~~ 329 (363) +.- -||--.|||.-.+..+++ T Consensus 380 ~Vi----pt~EE~~iA~~~~~ll~~ 400 (403) T 2iir_A 380 LVV----PTNEELMIARDTKEIVEK 400 (403) T ss_dssp EEC----CCCHHHHHHHHHHHHHCC T ss_pred EEE----CCCHHHHHHHHHHHHHHH T ss_conf 997----797899999999999997 No 105 >3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A Probab=36.62 E-value=18 Score=14.93 Aligned_cols=23 Identities=9% Similarity=0.133 Sum_probs=16.7 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 99699999999998389822453 Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMD 82 (363) Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id 82 (363) .+.......++++.++++..+++ T Consensus 89 ~~l~l~aa~eAl~dAGl~~~~~~ 111 (427) T 3ho9_A 89 IQYGIVAGVQAMQDSGLEITEEN 111 (427) T ss_dssp HHHHHHHHHHHHHHHTCCCCTTT T ss_pred HHHHHHHHHHHHHHCCCCHHHCC T ss_conf 99999999999998599824527 No 106 >3fk5_A 3-oxoacyl-synthase III; bacterial blight, XOO4209, FABH, xanthomonas oryzae PV. oryzae KACC10331, cytoplasm, multifunctional enzyme; 2.05A {Xanthomonas oryzae PV} Probab=35.72 E-value=19 Score=14.83 Aligned_cols=60 Identities=10% Similarity=0.130 Sum_probs=36.5 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEE-EECCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH Q ss_conf 969999999999838982245368-7406643-0125677999999988751486433303677 Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMDSI-AVTAGPG-LMGGLIVGLMTAKAISYVSHKPFYAINHLEG 122 (363) Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id~I-avt~gPG-~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~a 122 (363) +.-....+++|++++++.+|||.| .+|..|. .+|++ ....+..|...-+++.+.|+.--+ T Consensus 63 dmA~~Aa~~aL~~ag~~~~dId~lI~~s~t~~~~~P~~--a~~v~~~LGl~~~~~~~dv~~~C~ 124 (338) T 3fk5_A 63 DAATQAARKALIDAGIGIEKIGLLVNTSVSRDYLEPST--ASIVSGNLGVGDHCVTFDVANACL 124 (338) T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEEEECCSSCSCSSSCH--HHHHHHHHTCCTTCEEEECCCGGG T ss_pred HHHHHHHHHHHHHCCCCHHHCCEEEEEEECCCCCCCCH--HHHHHHHCCCCCCEEEEEEHHHHH T ss_conf 99999999999984989899999999821489758749--999999818998668986130157 No 107 >2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* Probab=35.43 E-value=19 Score=14.80 Aligned_cols=56 Identities=7% Similarity=-0.113 Sum_probs=31.5 Q ss_pred HHHHHHHHHHCCCCCCCCCEEEECC--CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 9999999998389822453687406--6430125677999999988751486433303 Q gi|254781038|r 64 DILIKQTLLRANMQISDMDSIAVTA--GPGLMGGLIVGLMTAKAISYVSHKPFYAINH 119 (363) Q Consensus 64 ~~li~~~l~~a~~~~~~id~Iavt~--gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH 119 (363) ...++++|++++++.++||.|.|.. ++-..++...-+.-...+.-..+++.+-+++ T Consensus 57 ~~Aa~~lL~~~~i~p~dId~liv~T~S~~d~~~s~as~v~~~l~~~g~~~~~~~di~~ 114 (450) T 2f82_A 57 FNAVTSLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTN 114 (450) T ss_dssp HHHHHHHHHHTTCCGGGEEEEEEECCCCSCSSSCHHHHHTHHHHTTTCCCCBCCEECS T ss_pred HHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEHHC T ss_conf 9999999997599989999999993698877765799999998730899822861401 No 108 >3a9l_A Poly-gamma-glutamate hydrolase; zinc ION binding, open alpha/beta mixed core structure; 1.90A {Bacillus phage PHINIT1} Probab=35.18 E-value=13 Score=15.84 Aligned_cols=24 Identities=8% Similarity=-0.072 Sum_probs=10.7 Q ss_pred CEEEEEEEECCCCCCCCCC-CCCCH Q ss_conf 4189887311334621218-71455 Q gi|254781038|r 30 GEILAEAVLSQIDQHGHYG-GVVPE 53 (363) Q Consensus 30 ~~il~~~~~sq~~~~~~~G-Gv~P~ 53 (363) =+|..+.+-++...-+.+| ||-|- T Consensus 23 y~i~~~~~~s~~~vlApHGGgIE~g 47 (216) T 3a9l_A 23 YNIEVKRQNPSMIYFSPHAGGIEVG 47 (216) T ss_dssp EEEEEEECCSSEEEEEEEEETTSTT T ss_pred EEEEEECCCCCEEEEECCCCCCCCC T ss_conf 7999960798689995777765737 No 109 >2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} Probab=34.59 E-value=19 Score=14.71 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=22.0 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCH Q ss_conf 996999999999983898224536874066430 Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMDSIAVTAGPGL 92 (363) Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~ 92 (363) .+.......++|+.++++..+.+-+.+..|-|. T Consensus 100 ~~~~l~aa~~Al~dAGl~~~~~~~~~~~vg~~~ 132 (434) T 2gp6_A 100 QRMSTVLSRRLWENAGSPEVDTNRLMVSIGTGL 132 (434) T ss_dssp HHHHHHHHHHHHHHTTCCCCCTTSEEEEEECSS T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECC T ss_conf 999999999999854998445678408996056 No 110 >1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A* Probab=34.19 E-value=20 Score=14.67 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=21.2 Q ss_pred ECCCCCCCCHHHHHHHHHHHCCCCCCHH----HHHHHHHHH Q ss_conf 0022336300238888988528876103----556665540 Q gi|254781038|r 160 RLGTTIDDALGECFDKIAKSLGLPYPGG----VEIEKAALM 196 (363) Q Consensus 160 ilg~T~Dda~Ge~~DK~ar~Lgl~yPgG----p~ie~~A~~ 196 (363) +++.....-+-+.=+++-..+||+-..| +.+-|+|.. T Consensus 218 ~~~~~a~~ia~~ir~~I~~~~gl~~SiGIa~nk~lAKlAs~ 258 (459) T 1t94_A 218 VFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSD 258 (459) T ss_dssp ECCSSHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHH T ss_conf 11667999999999999998699625442476888898897 No 111 >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Probab=33.51 E-value=20 Score=14.60 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=29.6 Q ss_pred CCEEEEEECCCEEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHCCCCC Q ss_conf 8439997068747999837564300022336300238888988528876 Q gi|254781038|r 136 PYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAKSLGLPY 184 (363) Q Consensus 136 PfL~LlvSGGhT~l~~~~~~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~y 184 (363) ..+.+=+-||+|.+.++++..-..-...|.+...-+..+.+++.+.-.| T Consensus 185 ~v~viDiG~~Ttd~~v~~~~~~~~~~s~~~~~g~~~~~~~i~~~l~~~~ 233 (355) T 3js6_A 185 KYSVLDFGSGTTIIDTYQNMKRVEEESFVINKGTIDFYKRIASHVSKKS 233 (355) T ss_dssp EEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHTC--- T ss_pred EEEEEEECCCEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHHHHHH T ss_conf 0899994898699999969888887660348872547999999999995 No 112 >2p0u_A Stilbenecarboxylate synthase 2; polyketide synthase, PKS type III, transferase; 1.90A {Marchantia polymorpha} Probab=33.45 E-value=20 Score=14.59 Aligned_cols=36 Identities=14% Similarity=0.047 Sum_probs=25.3 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEE-ECCCCCHHHHH Q ss_conf 9699999999998389822453687-40664301256 Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMDSIA-VTAGPGLMGGL 96 (363) Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id~Ia-vt~gPG~~~~L 96 (363) +.-....+++|++++++.+|||+|- +|.-|-..|++ T Consensus 122 ~La~~Aa~~AL~~ag~~~~dId~lI~~t~t~~~~P~~ 158 (413) T 2p0u_A 122 KLAKEASMNAIKEWGRPKSEITHIVMATTSGVNMPGA 158 (413) T ss_dssp HHHHHHHHHHHHHHTSCGGGCCEEEEEESSCCCBSCH T ss_pred HHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCH T ss_conf 9999999999998298989998999984589878878 No 113 >2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis atcc 12228} Probab=32.82 E-value=20 Score=14.68 Aligned_cols=20 Identities=15% Similarity=0.110 Sum_probs=11.7 Q ss_pred HHHHCCCEEEECCHHHCCCH Q ss_conf 99868988996287887725 Q gi|254781038|r 296 LCVLHGFRFVAPPARLCTDN 315 (363) Q Consensus 296 ~~~~~~~~~~~P~~~~ctDN 315 (363) ..++.|++++..+.-..+++ T Consensus 278 ~l~~~G~~vi~~~~l~~~~~ 297 (332) T 2ppv_A 278 QLKDSGIRVLTASNLVEISN 297 (332) T ss_dssp HHHHTTCEEECCTTSEEECT T ss_pred HHHHCCCEEEECCCEEECCC T ss_conf 99867996997153352168 No 114 >3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} Probab=31.50 E-value=22 Score=14.38 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=31.7 Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEECCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 99999999998389822453687406643-01256779999999887514864333 Q gi|254781038|r 63 LDILIKQTLLRANMQISDMDSIAVTAGPG-LMGGLIVGLMTAKAISYVSHKPFYAI 117 (363) Q Consensus 63 l~~li~~~l~~a~~~~~~id~Iavt~gPG-~~~~L~vG~~~Ak~la~~~~~Pli~V 117 (363) .....+++|++++++.+|||+|-++...+ ..|++ ....+..|...-++..+.+ T Consensus 100 a~~Aa~~aL~~ag~~~~dIdllI~~t~t~~~~P~~--a~~i~~~Lgl~~~~~~~~~ 153 (387) T 3oit_A 100 AAEAAKKAIAEWGRPAADITHLVVTTNSGAHVPGV--DFRLVPLLGLRPSVRRTML 153 (387) T ss_dssp HHHHHHHHHHHHTSCGGGCCEEEEEESSCCEESCH--HHHHHHHHTCCTTCEEEEE T ss_pred HHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCH--HHHHHHHHCCCCCEEEEEH T ss_conf 99999999998499988975799977789989869--9999998477787167652 No 115 >2d3m_A Pentaketide chromone synthase; chalcone synthase, polyketide synthase, transferase; HET: COA; 1.60A {Aloe arborescens} PDB: 2d51_A 2d52_A* Probab=31.20 E-value=22 Score=14.35 Aligned_cols=57 Identities=12% Similarity=0.020 Sum_probs=34.1 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEE-CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 96999999999983898224536874-066430125677999999988751486433303 Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMDSIAV-TAGPGLMGGLIVGLMTAKAISYVSHKPFYAINH 119 (363) Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id~Iav-t~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH 119 (363) +.-....+++|++++++.+|||+|-+ |.-|-..+++ ....++.|...-+...+.+++ T Consensus 117 ~La~~Aa~~AL~~ag~~~~dId~lI~~t~T~~~~P~~--~~~l~~~Lgl~~~~~~~~~~~ 174 (406) T 2d3m_A 117 ALGTEAAVKAIEEWGRPKSEITHLVFCTSCGVDMPSA--DFQCAKLLGLHANVNKYCIYM 174 (406) T ss_dssp HHHHHHHHHHHHHHCSCGGGCCEEEEEESSCCEESCH--HHHHHHHHTCCTTCEEEEEES T ss_pred HHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCH--HHHHHHHCCCCCCCEEEECCC T ss_conf 9999999999998097989998999986579878986--799999839998841763457 No 116 >1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7 Probab=30.44 E-value=21 Score=14.51 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=24.5 Q ss_pred EEEEHHHHHHHHHHHHHHHHHHHCCCEEEEC Q ss_conf 6541334587999999999998689889962 Q gi|254781038|r 277 LVVSGGVASNHFIRASLIDLCVLHGFRFVAP 307 (363) Q Consensus 277 lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P 307 (363) +-++-|+|.|+.|-+...+..+..|+.++.| T Consensus 144 l~~siGia~nk~lAKlAs~~~KP~g~~vi~~ 174 (221) T 1im4_A 144 ITVTVGVAPNKILAKIIADKSKPNGLGVIRP 174 (221) T ss_dssp CCEEEEEESSHHHHHHHHHHTCSSCEEECCG T ss_pred CCEEEEECCCHHHHHHHHHCCCCCCEEEECH T ss_conf 8766532685899999983658897699789 No 117 >3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: YES; 1.60A {Streptomyces avermitilis ma-4680} Probab=30.32 E-value=21 Score=14.47 Aligned_cols=99 Identities=19% Similarity=0.211 Sum_probs=47.6 Q ss_pred CCEEEEEECCCHHH---E-EEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 84688750260220---7-7887338888418988731133462121871455-99999999699999999998389822 Q gi|254781038|r 5 KKTVIGIETSCDET---A-VAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPE-VAARAHVDVLDILIKQTLLRANMQIS 79 (363) Q Consensus 5 ~~~ILgIETScd~t---s-vaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~-~A~~~H~~~l~~li~~~l~~a~~~~~ 79 (363) -.+|-|+|-|.++. . +|+|-.+-.+.+++....... .....| +|- +|.|+ ++ .+-+++++... T Consensus 39 ~~~VaGvDvsy~~~~~~~~a~~Vvl~~~~~~~v~~~~~~~-~~~~PY---IPG~LaFRE----~p-~~l~al~~l~~--- 106 (237) T 3goc_A 39 TGRVTGVDVAYDDERDVVVAAAVVLDAATLDVVAEATAVG-EVSFPY---VPGLLAFRE----IP-TVLAALDALPC--- 106 (237) T ss_dssp SSEEEEEEEEECSSSSEEEEEEEEEETTTCCEEEEEEEEE-ECCSCC---CTTCGGGGT----HH-HHHHHHHTSSS--- T ss_pred CCEEEEEEEEEECCCCEEEEEEEEEECCCCEEEEEEEEEE-ECCCCC---CCCHHHHHH----HH-HHHHHHHHCCC--- T ss_conf 7789999866856998699999999889854999999994-047875---653254520----18-99999985678--- Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH Q ss_conf 453687406643012567799999998875148643330 Q gi|254781038|r 80 DMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAIN 118 (363) Q Consensus 80 ~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~Vn 118 (363) ..|.|-| .|=|..-.=+ ...|--|...+++|-|||- T Consensus 107 ~Pdlllv-DG~Gi~HPR~--~GlAsHlGv~l~~PtIGVA 142 (237) T 3goc_A 107 PPGLIVC-DGYGVAHPRR--FGLASHLGVLTGLPTIGVA 142 (237) T ss_dssp CCSEEEE-ESCSSCSTTS--CCHHHHHHHHHCSCEEEEE T ss_pred CCCEEEE-CCCEEECCCC--CCHHHEEEECCCCCEEEEE T ss_conf 9999998-2860227876--6642203210598867541 No 118 >1ztc_A Hypothetical protein TM0894; structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Probab=29.72 E-value=23 Score=14.18 Aligned_cols=64 Identities=6% Similarity=0.069 Sum_probs=39.0 Q ss_pred CCCCEEEEEECCCHH--------HEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 888468875026022--------077887338888418988731133462121871455999999996999999999983 Q gi|254781038|r 3 KIKKTVIGIETSCDE--------TAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRA 74 (363) Q Consensus 3 ~~~~~ILgIETScd~--------tsvaiv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~~A~~~H~~~l~~li~~~l~~a 74 (363) .||+-+|+..++... +++.+++. .+..+|.+.... . +. +.+.+.|++. T Consensus 12 ~m~~~~~~~g~~~~~~~~~~~~~~~~~li~~--~~~~iLIDtG~~------------~------~~----~~l~~~l~~~ 67 (221) T 1ztc_A 12 HMELKILVTGGNVFVPGRLNAHFSTVVYLEH--KDRRIIIDPGNL------------S------SM----DELEEKFSEL 67 (221) T ss_dssp CEEEEEEECCBEEEETTTEECCBCCEEEEEE--TTEEEEECCCCG------------G------GH----HHHHHHHHHH T ss_pred EEEEEEEECCCCEECCCCCCCCCEEEEEEEE--CCEEEEEECCCC------------C------CH----HHHHHHHHHC T ss_conf 3698999818975458866788237999998--999999919997------------2------19----9999999984 Q ss_pred CCCCCCCCEEEECCCC Q ss_conf 8982245368740664 Q gi|254781038|r 75 NMQISDMDSIAVTAGP 90 (363) Q Consensus 75 ~~~~~~id~Iavt~gP 90 (363) +++.++||+|-+|-.= T Consensus 68 g~~~~~I~~Ii~TH~H 83 (221) T 1ztc_A 68 GISPDDITDVLFTHVH 83 (221) T ss_dssp TCCGGGCCEEECSCCC T ss_pred CCCHHHCCEEEECCCC T ss_conf 9996898499959987 No 119 >3h87_C Putative uncharacterized protein; toxin antitoxin complex, RHH motif, structural genomics; 1.49A {Mycobacterium tuberculosis} Probab=29.59 E-value=21 Score=14.46 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=16.6 Q ss_pred HHHHHHHHHHHHHHHHHHHCCC Q ss_conf 3345879999999999986898 Q gi|254781038|r 281 GGVASNHFIRASLIDLCVLHGF 302 (363) Q Consensus 281 GGVaaN~~LR~~l~~~~~~~~~ 302 (363) =|++-|+|||+.|++.+...+- T Consensus 24 ~GlSRnE~L~r~le~~a~~~~~ 45 (73) T 3h87_C 24 LGLSRTEYIRRRLAQDAQTARV 45 (73) T ss_dssp HTCCHHHHHHHHHHHHHTSCCC T ss_pred CCCCHHHHHHHHHHHHHCCCCC T ss_conf 3876889999998876227788 No 120 >3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis} Probab=29.41 E-value=24 Score=14.14 Aligned_cols=99 Identities=17% Similarity=0.224 Sum_probs=46.0 Q ss_pred CCEEEEEECCC--HH---HEEE-EEECCCCCCEEEEEEEECCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 84688750260--22---0778-87338888418988731133462121871455-999999996999999999983898 Q gi|254781038|r 5 KKTVIGIETSC--DE---TAVA-VVRRKDSHGEILAEAVLSQIDQHGHYGGVVPE-VAARAHVDVLDILIKQTLLRANMQ 77 (363) Q Consensus 5 ~~~ILgIETSc--d~---tsva-iv~~~~~~~~il~~~~~sq~~~~~~~GGv~P~-~A~~~H~~~l~~li~~~l~~a~~~ 77 (363) -++|-|+|-|. ++ +++| +|-.+-.+.+++....... .....| +|- +|.|+ ++. +-+++++-... T Consensus 39 v~~VaGvDvsy~~~~~~~~~~a~~Vvl~~~~~~~v~~~~~~~-~~~~PY---IPG~LaFRE----~p~-ll~al~~L~~~ 109 (246) T 3ga2_A 39 INTTAGVDLAYWEQDGEPYGVCCIIVIDADTKEVIEKVHSMG-RISVPY---VSGFLAFRE----LPL-IIEAAKKLETE 109 (246) T ss_dssp CSEEEEEEEEEEEETTEEEEEEEEEEEETTTCCEEEEEEEEE-ECCCCS---SSSCGGGGT----HHH-HHHHHHHCSSC T ss_pred CCEEEEEEEEEECCCCCEEEEEEEEEEECCCCCEEEEEEEEE-ECCCCC---CCCHHHHHH----HHH-HHHHHHHCCCC T ss_conf 768999986665488864899999999779871899999996-236883---652365621----799-99999856789 Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH Q ss_conf 22453687406643012567799999998875148643330 Q gi|254781038|r 78 ISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAIN 118 (363) Q Consensus 78 ~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~Vn 118 (363) .|.|-| .|=|..=.- +...|--+...+++|-|||- T Consensus 110 ---PDvllv-DG~Gi~HPR--~~GlA~HlGv~l~~PtIGVA 144 (246) T 3ga2_A 110 ---PDVFLF-DGNGYLHYN--HMGVATHAAFFLGKPTIGIA 144 (246) T ss_dssp ---CSCEEE-EBCSSSSTT--SCCHHHHHHHHHTSCEEEEE T ss_pred ---CCEEEE-CCCCCCCCC--CCCHHHHEEEECCCCEEEEE T ss_conf ---999999-286210687--76453310000398876441 No 121 >2o2z_A Hypothetical protein; NP_244435.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A Probab=29.00 E-value=24 Score=14.14 Aligned_cols=14 Identities=7% Similarity=-0.157 Sum_probs=6.5 Q ss_pred HHHCCCEEEECCHH Q ss_conf 98689889962878 Q gi|254781038|r 297 CVLHGFRFVAPPAR 310 (363) Q Consensus 297 ~~~~~~~~~~P~~~ 310 (363) .+..+++++..+.- T Consensus 280 l~~~g~~vi~~d~~ 293 (323) T 2o2z_A 280 LKALGVGTISDYFV 293 (323) T ss_dssp HHHTTCEEEEECCE T ss_pred HHHCCCEEEECCCE T ss_conf 98679979950415 No 122 >1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 Probab=28.41 E-value=24 Score=14.03 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=17.3 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 99699999999998389822453 Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMD 82 (363) Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id 82 (363) .+.......++|++++++..+++ T Consensus 72 ~~~~l~a~~~Al~dAGl~~~~~~ 94 (408) T 1j3n_A 72 VQYALIAAQLALEDAGLKPEDLD 94 (408) T ss_dssp HHHHHHHHHHHHHHHTCCGGGSC T ss_pred HHHHHHHHHHHHHHCCCCHHHCC T ss_conf 99999999999997699956768 No 123 >3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A Probab=27.69 E-value=25 Score=13.94 Aligned_cols=83 Identities=12% Similarity=-0.007 Sum_probs=43.4 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEE-CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH--HHHHHHCC-----CCCCC Q ss_conf 96999999999983898224536874-066430125677999999988751486433303--67765301-----32256 Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMDSIAV-TAGPGLMGGLIVGLMTAKAISYVSHKPFYAINH--LEGHILTA-----RLTDD 132 (363) Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id~Iav-t~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH--~~aH~~~~-----~l~~~ 132 (363) +.-....+++|++++++.+|||+|.+ |..|-..+++- ...++.|...-+...+.+++ +-|=+.+- ++... T Consensus 100 ~la~~Aa~~aL~~ag~~~~dIdllI~~t~t~~~~P~~a--~~v~~~Lgl~~~~~~~~~~~~aC~g~~~aL~~A~~~i~sg 177 (387) T 3a5r_A 100 ELGKEAALKAIKEWGQPKSKITHLIVCCLAGVDMPGAD--YQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENN 177 (387) T ss_dssp HHHHHHHHHHHHHHCSCGGGCCEEEEEESSCCEESCHH--HHHHHHTTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCHH--HHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999984999889919999664898899879--9999984689881355334782189999999999999719 Q ss_pred CCCCCEEEEEECCCE Q ss_conf 799843999706874 Q gi|254781038|r 133 IAFPYLVLLVSGGHT 147 (363) Q Consensus 133 ~~~PfL~LlvSGGhT 147 (363) .. --+|+|++-.+ T Consensus 178 ~~--~~vLvV~~E~~ 190 (387) T 3a5r_A 178 KG--ARVLIVCSEMT 190 (387) T ss_dssp TT--CEEEEEEEECC T ss_pred CC--CEEEEEEEEHH T ss_conf 99--80689852020 No 124 >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Probab=26.81 E-value=26 Score=13.84 Aligned_cols=238 Identities=15% Similarity=0.135 Sum_probs=107.1 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHH-HHHHHHHHHHHHHHCCCCC-CCHHHHHHHHCCC Q ss_conf 4559999999969999999999838982245368740664301256-7799999998875148643-3303677653013 Q gi|254781038|r 51 VPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGL-IVGLMTAKAISYVSHKPFY-AINHLEGHILTAR 128 (363) Q Consensus 51 ~P~~A~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L-~vG~~~Ak~la~~~~~Pli-~VnH~~aH~~~~~ 128 (363) .||..+-.-.+.+-...++.+ +. .+....+| =|.+|+.- |-.+--|-.+ .++.++ =||.--|=++.-. T Consensus 115 ~peel~a~iL~~lk~~ae~~~---~~---~v~~~VIt-VPa~f~~~qR~a~~~Aa~~---AGl~v~~linEptAAAl~y~ 184 (554) T 1yuw_A 115 YPEEVSSMVLTKMKEIAEAYL---GK---TVTNAVVT-VPAYFNDSQRQATKDAGTI---AGLNVLRIINEPTAAAIAYG 184 (554) T ss_dssp CHHHHHHHHHHHHHHHHHHHH---SS---CCCEEEEE-ECTTCCHHHHHHHHHHHHT---TTCEEEEEEEHHHHHHHHTT T ss_pred CHHHHHHHHHHHHHHHHHHHH---CC---CCCEEEEE-ECCCCCHHHHHHHHHHHHH---CCCCEEEEECHHHHHHHHHC T ss_conf 799999999999999999983---89---97739999-9999999999999999998---69957898256799999835 Q ss_pred CCCCCC--CCCEEEEEECCCEEEEEECC-CCCCEECCCCCCCCH-HHHHHHHH-HH--------CCCCCCHHH-HHHHHH Q ss_conf 225679--98439997068747999837-564300022336300-23888898-85--------288761035-566655 Q gi|254781038|r 129 LTDDIA--FPYLVLLVSGGHTQILLVRD-VAHYDRLGTTIDDAL-GECFDKIA-KS--------LGLPYPGGV-EIEKAA 194 (363) Q Consensus 129 l~~~~~--~PfL~LlvSGGhT~l~~~~~-~~~~~ilg~T~Dda~-Ge~~DK~a-r~--------Lgl~yPgGp-~ie~~A 194 (363) +..... --+|.+=+=||++.+-+++- .+.+++++..-|... |+-||+.= .. -+.....-+ .+.++- T Consensus 185 ~~~~~~~~~~vlV~D~Gggt~dvSi~~~~~~~~~vla~~gd~~LGG~d~D~~l~~~~~~~f~~k~~~~~~~~~~~~~~L~ 264 (554) T 1yuw_A 185 LDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLR 264 (554) T ss_dssp CSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTSCCTTSCHHHHHHHH T ss_pred CCCCCCCCCEEEEEECCCCEEEEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH T ss_conf 54668997689999979971899999997998999996488875979999999999999999984899985999999999 Q ss_pred HHC--------CCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 405--------733345861110688754221024589999998511201210688999999999999999999999998 Q gi|254781038|r 195 LMG--------DGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASFQVTVVRILQARLKQGFLLF 266 (363) Q Consensus 195 ~~g--------~~~~~~~P~p~~~~~~~dFSFSGLkTav~~~i~~~~~~~~~~~~diaasfQ~~i~~~L~~k~~~a~~~~ 266 (363) ... ......+..+... .+.||+++ ...++-..+|..+-.-+.+ .+++++... T Consensus 265 ~~aEk~K~~LS~~~~~~i~i~~l~-~~~d~~~~---------------itR~eFe~l~~~l~~r~~~----~i~~~L~~a 324 (554) T 1yuw_A 265 TACERAKRTLSSSTQASIEIDSLY-EGIDFYTS---------------ITRARFEELNADLFRGTLD----PVEKALRDA 324 (554) T ss_dssp HHHHHHHHHHTTSSEEEEEETTCS-SSCCEEEE---------------EEHHHHHHHTHHHHHHTTH----HHHHHHHHT T ss_pred HHHHHHHHHCCCCCEEEEEEEECC-CCCCCEEE---------------EEHHHHHHHHHHHHHHHHH----HHHHHHHHC T ss_conf 999999986798864999974035-88743078---------------7799999888999999999----999999982 Q ss_pred HHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHH Q ss_conf 7621445523654133458799999999999868988996287887725899999999 Q gi|254781038|r 267 RKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAWAAL 324 (363) Q Consensus 267 ~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ag~ 324 (363) + .....+..++++||-+.-..+|+.++++.....+. ..+..|=|+=.|.|=+ T Consensus 325 ~-~~~~dId~V~LvGGssriP~V~~~l~~~f~~~~~~-----~~in~deaVa~GAA~~ 376 (554) T 1yuw_A 325 K-LDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELN-----KSINPDEAVAYGAAVQ 376 (554) T ss_dssp T-CCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCB-----CCSCTTTHHHHHHHHH T ss_pred C-CCHHHCCEEEEECCCCCHHHHHHHHHHHHCCCCCC-----CCCCCHHHHHHHHHHH T ss_conf 9-99888978999898374377999999981998888-----8879506789989999 No 125 >2w6k_A COBE; biosynthetic protein, cobalamin, complete proteome, vitamin B12; 1.70A {Pseudomonas aeruginosa} SCOP: c.151.1.1 PDB: 2bsn_A 2w6l_A Probab=26.60 E-value=26 Score=13.82 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=37.3 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 969999999999838982245368740664301256779999999887514864333036 Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHL 120 (363) Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~ 120 (363) +.+...++++|.+.++...+|+.||.-.-----++| ..+|..+++|++-+.-- T Consensus 25 e~i~~ai~~al~~~~l~~~~i~~iASid~K~dE~gl-------~~~A~~l~~p~~~~~~e 77 (145) T 2w6k_A 25 EHLRALLERTLGEHGRSLAELDALASIDGKRDEPGL-------RQLATLLERPVHFLAPA 77 (145) T ss_dssp HHHHHHHHHHHHHTTCCGGGCCEEEEECSSSCCHHH-------HHHHHHHTSCEEEECHH T ss_pred HHHHHHHHHHHHHCCCCHHHHHEEECCCCCCCCHHH-------HHHHHHHCCCEEEECHH T ss_conf 999999999999859997883334612213798999-------99999939985986899 No 126 >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Probab=26.36 E-value=26 Score=13.79 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=35.2 Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHH-----CCCEEEECCHHHCCCHHHHHHHHHHHHHHC Q ss_conf 52365413345879999999999986-----898899628788772589999999999984 Q gi|254781038|r 274 QAVLVVSGGVASNHFIRASLIDLCVL-----HGFRFVAPPARLCTDNAVMIAWAALERMEA 329 (363) Q Consensus 274 ~~~lvv~GGVaaN~~LR~~l~~~~~~-----~~~~~~~P~~~~ctDNAaMIA~ag~~~~~~ 329 (363) ...++++||.+.=.-++++|++.... ..+++..|+ +...-+|.|--.+-. T Consensus 294 ~~nIil~GG~s~~~G~~~RL~~eL~~~~p~~~~~~v~~~~------~~~~~~W~Ggsilas 348 (375) T 2fxu_A 294 YANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP------ERKYSVWIGGSILAS 348 (375) T ss_dssp HTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCT------TTTSHHHHHHHHHHH T ss_pred HCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCC------CCCEEEEHHHHHHHC T ss_conf 5355882551357058999999999768998348994599------878258641667467 No 127 >1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4 Probab=26.30 E-value=27 Score=13.78 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=36.4 Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHH-HHHHHHHHHHHHCCCCCCC Q ss_conf 999999999983898224536874066430125677-9999999887514864333 Q gi|254781038|r 63 LDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIV-GLMTAKAISYVSHKPFYAI 117 (363) Q Consensus 63 l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~v-G~~~Ak~la~~~~~Pli~V 117 (363) +...++++|.+-|+++++|-..-.-.|=|.. ||-+ ...+-|++|- +++|++|| T Consensus 134 ~~~~~~~~l~~lg~~~~~~~~~E~da~LGnG-GLGrLAg~~LkSaAd-L~lP~vG~ 187 (879) T 1ygp_A 134 PREMIKGALDELGFKLEDVLDQEPDAGLGNG-GLGRLAACFVDSMAT-EGIPAWGY 187 (879) T ss_dssp CHHHHHHHHHHHTCCHHHHHTTCCCBCSCCS-HHHHHHHHHHHHHHH-TTCCEEEE T ss_pred HHHHHHHHHHHCCCCHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHH-CCCCEEEE T ss_conf 2799999999819999999854867678885-089999999999986-89896999 No 128 >1gnl_A HCP, hybrid cluster protein; anaerobic desulfovibrio desulfuricans, iron anomalous; HET: FSO; 1.25A {Desulfovibrio desulfuricans} SCOP: e.26.1.1 PDB: 1gn9_A* 1oa0_A* 1upx_A* Probab=25.49 E-value=27 Score=13.68 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=28.3 Q ss_pred HHCCCHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCC Q ss_conf 8877258999999999998499-98876200235787875775 Q gi|254781038|r 310 RLCTDNAVMIAWAALERMEAGL-PADDLSISPRSRWPLDEKAP 351 (363) Q Consensus 310 ~~ctDNAaMIA~ag~~~~~~g~-~~~~~~~~~~~rw~ld~~a~ 351 (363) .=|.||+-++..+.-..=.-|. ..+++-+...+-| ++|+|. T Consensus 450 G~C~D~~r~~~~a~~LA~~lg~~di~dLPl~~~~~W-~eqKAv 491 (544) T 1gnl_A 450 GQCNDSYSLAVIALKLKEVFGLEDVNDLPIVYNIAW-YEQKAV 491 (544) T ss_dssp CSGGGHHHHHHHHHHHHHHTTCSCGGGSSEEEEEEC-CSHHHH T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECHH-HHHHHH T ss_conf 056337889999999999739997566865764014-658999 No 129 >3bpp_A 1510-N membrane protease; specific for A stomatin homolog, archaea, thermostable, catalytic DYAD, hydrolase; 2.30A {Pyrococcus horikoshii} PDB: 2deo_A Probab=25.47 E-value=27 Score=13.68 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=23.0 Q ss_pred CCCEEEE-CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHC Q ss_conf 4536874-0664301256779999999887514864333-036776530 Q gi|254781038|r 80 DMDSIAV-TAGPGLMGGLIVGLMTAKAISYVSHKPFYAI-NHLEGHILT 126 (363) Q Consensus 80 ~id~Iav-t~gPG~~~~L~vG~~~Ak~la~~~~~Pli~V-nH~~aH~~~ 126 (363) ++++|.. -.-|| ++...+...++.+.. ..+|.+++ .-+-+.+.+ T Consensus 38 ~~kaivL~IdSPG--G~v~~~~~I~~~i~~-~~~~v~~~v~~~~~~AaS 83 (230) T 3bpp_A 38 NAEAIIIELDTPG--GRADAMMNIVQRIQQ-SKIPVIIYVYPPGASAAS 83 (230) T ss_dssp TCSEEEEEEEBSC--BCHHHHHHHHHHHHT-CSSCEEEEECSTTCEEET T ss_pred CCCEEEEEEECCC--CCHHHHHHHHHHHHH-CCCCCCEEEEECCHHHHH T ss_conf 9986999985988--189999999999860-467885799973446777 No 130 >3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 2cbl_A* 1b47_A Probab=25.36 E-value=28 Score=13.66 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=41.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHC-----CCEEEECCHHHCCCHH Q ss_conf 9999999999999999999987621445523654133458799999999999868-----9889962878877258 Q gi|254781038|r 246 SFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLH-----GFRFVAPPARLCTDNA 316 (363) Q Consensus 246 sfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~~~~~~~-----~~~~~~P~~~~ctDNA 316 (363) .|-..-.+.|+.|+++++..++...+. + ---++..|..|.+++-.. .++..||.-.||.|+= T Consensus 91 eyl~iyl~nl~~K~kq~~~Lfk~~~e~-----~----f~e~S~~RR~LtKLsLiFSHml~elkalFP~g~~~g~~~ 157 (329) T 3bux_B 91 EYFRVFMENLMKKTKQTISLFKEGKER-----M----YEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTF 157 (329) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGG-----G----GSTTCHHHHHHHHHHHHHHHHHHHHHHHSGGGSCCGGGC T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCHH-----H----HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEE T ss_conf 520467999999999999998853444-----4----242328887535689989999999986588988526402 No 131 >3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 2r8j_A* 2r8k_A* 2wtf_A* 1jih_A* Probab=25.23 E-value=13 Score=15.97 Aligned_cols=17 Identities=0% Similarity=-0.120 Sum_probs=8.0 Q ss_pred CCCHHHHHHHHHHHHHH Q ss_conf 77258999999999998 Q gi|254781038|r 312 CTDNAVMIAWAALERME 328 (363) Q Consensus 312 ctDNAaMIA~ag~~~~~ 328 (363) .++++..|--++...++ T Consensus 473 ~~~~~~~i~~~a~~L~~ 489 (520) T 3mfi_A 473 INFQSHELLKVGIKFVT 489 (520) T ss_dssp GGGHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHH T ss_conf 88689999999999999 No 132 >3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris} Probab=24.64 E-value=28 Score=13.58 Aligned_cols=54 Identities=7% Similarity=0.062 Sum_probs=32.2 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEE-CCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCCH Q ss_conf 96999999999983898224536874-06643-012567799999998875148643330 Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMDSIAV-TAGPG-LMGGLIVGLMTAKAISYVSHKPFYAIN 118 (363) Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id~Iav-t~gPG-~~~~L~vG~~~Ak~la~~~~~Pli~Vn 118 (363) +.-....+++|++++++.+|||.|-+ |.-|. .+|+.- ...++.|. ++...+-++ T Consensus 119 ~ma~~AA~~AL~~ag~~~~dId~lI~at~t~d~~~P~~a--~~v~~~LG--~~~~a~di~ 174 (392) T 3led_A 119 EMAVTAAEQAIERWGKPRERIGAVLCACSNMQRAYPAMA--IEVQNALG--LGGFAFDMN 174 (392) T ss_dssp HHHHHHHHHHHHHHCSCGGGEEEEEEESSCCSCSBSCHH--HHHHHHTT--CCSEEEEEE T ss_pred HHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCHH--HHHHHHCC--CCCEEEEHH T ss_conf 999999999999839998899699997677998888299--99998522--576698843 No 133 >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A Probab=24.43 E-value=29 Score=13.55 Aligned_cols=54 Identities=7% Similarity=-0.037 Sum_probs=26.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHH Q ss_conf 6889999999999999999999999987621445523654133458799999999 Q gi|254781038|r 240 IADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLI 294 (363) Q Consensus 240 ~~diaasfQ~~i~~~L~~k~~~a~~~~~~~~~~~~~~lvv~GGVaaN~~LR~~l~ 294 (363) ..+-...|-+.++..|..-........ +..+.-.+.+++-.|.-.|..+++.+. T Consensus 305 p~~AS~~fs~~l~~~l~~l~~~~~~~~-~~dd~i~~~~~~~~G~lt~~~~~~~~~ 358 (361) T 1pjc_A 305 PWTATQALNNSTLPYVVKLANQGLKAL-ETDDALAKGLNVQAHRLVHPAVQQVFP 358 (361) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGG-GTCHHHHHHEEEETTEECCHHHHTTST T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCHHHHCCCEEECCEECCHHHHHHHH T ss_conf 999999999999999999973856356-889588726689799981899997634 No 134 >1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A Probab=24.25 E-value=29 Score=13.53 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=34.5 Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH Q ss_conf 699999999998389822453687406643-0125677999999988751486433303677 Q gi|254781038|r 62 VLDILIKQTLLRANMQISDMDSIAVTAGPG-LMGGLIVGLMTAKAISYVSHKPFYAINHLEG 122 (363) Q Consensus 62 ~l~~li~~~l~~a~~~~~~id~Iavt~gPG-~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~a 122 (363) ......+++|++++++.+|||.|-++.-.+ +.+... ....++.+. ..+.+.+.+++.-+ T Consensus 54 la~~Aa~~aL~~a~~~~~dId~li~~s~~~~~~~~~~-a~~~~~~l~-~~~~~~~di~~~C~ 113 (313) T 1zow_A 54 LAYEASVKAIADAGIQPEDIDMIIVATATGDMPFPTV-ANMLQERLG-TGKVASMDQLAACS 113 (313) T ss_dssp HHHHHHHHHHHHHTCCGGGCCEEEEECSSCSCSSSCH-HHHHHHHHT-CCSCCEEEEECGGG T ss_pred HHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCHH-HHHHHHHHC-CCCCEEEEHHCCCC T ss_conf 9999999999884999778657998410356578247-899987523-78665875101433 No 135 >2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} Probab=23.86 E-value=29 Score=13.48 Aligned_cols=32 Identities=9% Similarity=0.074 Sum_probs=23.4 Q ss_pred HHHHHHHHHHCCCCCCCCCEEEECC--CCCHHHH Q ss_conf 9999999998389822453687406--6430125 Q gi|254781038|r 64 DILIKQTLLRANMQISDMDSIAVTA--GPGLMGG 95 (363) Q Consensus 64 ~~li~~~l~~a~~~~~~id~Iavt~--gPG~~~~ 95 (363) ...++++|++++++.++||.|-|+. ++-..++ T Consensus 78 ~~Aa~~aL~~a~i~p~~Id~li~aT~s~~~~~ps 111 (478) T 2p8u_A 78 MTVVQNLMERNNLSYDCIGRLEVGTETIIDKSKS 111 (478) T ss_dssp HHHHHHHHHHTTCCGGGEEEEEEECSCCSCSSSC T ss_pred HHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCC T ss_conf 9999999997599989999999991688877875 No 136 >1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A Probab=23.29 E-value=25 Score=13.95 Aligned_cols=31 Identities=10% Similarity=0.106 Sum_probs=18.5 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCC Q ss_conf 999999699999999998389822453687406643 Q gi|254781038|r 56 ARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPG 91 (363) Q Consensus 56 ~~~H~~~l~~li~~~l~~a~~~~~~id~Iavt~gPG 91 (363) ...=.+.+...+++++++-+. -.|+++-|.- T Consensus 26 ~~~~a~~i~~~i~~~l~~~~~-----~~i~lsGGst 56 (232) T 1vl1_A 26 VDFVVEKIRTKMEKLLEEKDK-----IFVVLAGGRT 56 (232) T ss_dssp HHHHHHHHHHHHHHHHHHCSC-----EEEEECCSTT T ss_pred HHHHHHHHHHHHHHHHHHCCC-----EEEEECCCHH T ss_conf 999999999999999987799-----8999899824 No 137 >1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 Probab=23.12 E-value=30 Score=13.38 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=23.2 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC----EEEECCCCCHHH Q ss_conf 99699999999998389822453----687406643012 Q gi|254781038|r 60 VDVLDILIKQTLLRANMQISDMD----SIAVTAGPGLMG 94 (363) Q Consensus 60 ~~~l~~li~~~l~~a~~~~~~id----~Iavt~gPG~~~ 94 (363) .+.......++|+.+++...+++ .|-+..+.|... T Consensus 78 ~~~~l~a~~eAl~dAgl~~~~~~~~r~gv~~Gs~~g~~~ 116 (416) T 1e5m_A 78 CHFAVCASQQAINDAKLVINELNADEIGVLIGTGIGGLK 116 (416) T ss_dssp HHHHHHHHHHHHHHHTCCCCTTTGGGEEEEEECSSCSHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCC T ss_conf 999999999999866998301476640379984356544 No 138 >2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus} Probab=23.11 E-value=30 Score=13.38 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=30.5 Q ss_pred EEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCC Q ss_conf 479998375643000223363002388889885288761 Q gi|254781038|r 147 TQILLVRDVAHYDRLGTTIDDALGECFDKIAKSLGLPYP 185 (363) Q Consensus 147 T~l~~~~~~~~~~ilg~T~Dda~Ge~~DK~ar~Lgl~yP 185 (363) ++|+.+++..-...+--.-++.+++.++|++..+++|-+ T Consensus 4 ~mIlRvrS~~G~~Rv~v~~~~t~~~L~~kI~~~l~~~~~ 42 (80) T 2pjh_A 4 SIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNN 42 (80) T ss_dssp CCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTT T ss_pred CEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCCC T ss_conf 479999989997889818977199999999998599988 No 139 >3gcg_B MAP, L0028 (mitochondria associated protein); CDC42, complex, alternative splicing, cell membrane, GTP-binding, lipoprotein, membrane; 2.30A {Escherichia coli} Probab=22.84 E-value=31 Score=13.34 Aligned_cols=117 Identities=11% Similarity=0.154 Sum_probs=66.6 Q ss_pred CCCCCH--HHHHHHHHHHHHCCC-C-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCC Q ss_conf 422102--458999999851120-1-----------------21068899999999999999999999999-87621445 Q gi|254781038|r 215 DFSFSG--LKTSVQKTICAFDVL-E-----------------KQDIADICASFQVTVVRILQARLKQGFLL-FRKAFPHK 273 (363) Q Consensus 215 dFSFSG--LkTav~~~i~~~~~~-~-----------------~~~~~diaasfQ~~i~~~L~~k~~~a~~~-~~~~~~~~ 273 (363) +|||+- |-+.++..|++.... + ++...++|.+.+..+....-.++-.++.. +......+ T Consensus 15 ~is~n~~kl~~~iL~~V~~qs~t~di~~W~kqE~ivy~Sr~iNk~ID~~c~~n~~~Is~e~K~~IF~~ie~~~~~~LD~n 94 (172) T 3gcg_B 15 NFVINHGKLTNQLLQAVAKQTRNGDTQQWFQQEQTTYISRTVNRTLDDYCRSNNSVISKETKGHIFRAVENALQQPLDMN 94 (172) T ss_dssp -CCCCHHHHHHHHHHHHHTSSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTCCCCTT T ss_pred EEEECHHHHHHHHHHHHHHHCCCCCHHHHHHCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHH T ss_conf 14530889999999999986255537899852030116899988899999866886887889999999999818876722 Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 52365413345879999999999986898899628788772589999999999984999887620 Q gi|254781038|r 274 QAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAPPARLCTDNAVMIAWAALERMEAGLPADDLSI 338 (363) Q Consensus 274 ~~~lvv~GGVaaN~~LR~~l~~~~~~~~~~~~~P~~~~ctDNAaMIA~ag~~~~~~g~~~~~~~~ 338 (363) .-+=.+..=+..|.++-+++.++|.+.--. -....|+|+ ||-..+-+-|++.+. ++++ T Consensus 95 aAQsSI~H~l~~N~~f~kk~d~Lc~~g~~~---~~k~~t~~~--~in~iad~~fek~~~--~i~i 152 (172) T 3gcg_B 95 GAQSSIGHFLQSNKYFNQKVDEQCGKRVDP---ITRFNTQTK--MIEQVSQEIFERNFS--GFKV 152 (172) T ss_dssp CCCCHHHHHHHTCHHHHHHHHHHHTTCCCH---HHHHHHHHH--HHHHHHHHHHHHHCT--TSCH T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHCCCCH---HHHHHHHHH--HHHHHHHHHHHHCCC--CCCH T ss_conf 556249999963399999999998648977---778889999--999999999996389--9879 No 140 >1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, transferase; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A* Probab=22.55 E-value=31 Score=13.31 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=36.2 Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECCCCCHH-HHHHH-HHHHHHHHHHHHCCCCCCCH Q ss_conf 69999999999838982245368740664301-25677-99999998875148643330 Q gi|254781038|r 62 VLDILIKQTLLRANMQISDMDSIAVTAGPGLM-GGLIV-GLMTAKAISYVSHKPFYAIN 118 (363) Q Consensus 62 ~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~-~~L~v-G~~~Ak~la~~~~~Pli~Vn 118 (363) .|...++++|++-|+++++|-. .-.-||++ |||-+ ...+-|++|- +++|++||- T Consensus 82 gi~~~~~~~l~~lg~~~~~~~~--~E~d~~LgnGGLG~LAgd~lkSaad-LglP~vGvG 137 (796) T 1l5w_A 82 GWYQDVQDSLKAYDINLTDLLE--EEIDPALGNGGLGRLAACFLDSMAT-VGQSATGYG 137 (796) T ss_dssp TCHHHHHHHHHTTTCCHHHHHT--TCCCCCCCCSHHHHHHHHHHHHHHH-TTCCEEEEE T ss_pred CCHHHHHHHHHHCCCCHHHHHH--CCCCCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEE T ss_conf 8689999999980999999985--4767787885079999999999986-797969997 No 141 >3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae} Probab=22.02 E-value=32 Score=13.24 Aligned_cols=20 Identities=10% Similarity=0.115 Sum_probs=10.0 Q ss_pred HHHHHHHHHHHHHHHHCCCE Q ss_conf 58799999999999868988 Q gi|254781038|r 284 ASNHFIRASLIDLCVLHGFR 303 (363) Q Consensus 284 aaN~~LR~~l~~~~~~~~~~ 303 (363) ++.+.|-+++++.++++|++ T Consensus 17 mSSsll~~km~~~a~~~~~~ 36 (108) T 3nbm_A 17 GTSAQLANAINEGANLTEVR 36 (108) T ss_dssp SHHHHHHHHHHHHHHHHTCS T ss_pred CCHHHHHHHHHHHHHHCCCC T ss_conf 75999999999999976997 No 142 >2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 2pyi_A* 2pyd_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* 1xl0_A* 1xl1_A* 1z62_A* 2amv_A* 2f3p_A* 2f3q_A* ... Probab=21.50 E-value=33 Score=13.17 Aligned_cols=53 Identities=11% Similarity=0.240 Sum_probs=34.4 Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHH-HH-HHHHHHHHHHHHHHCCCCCCC Q ss_conf 699999999998389822453687406643012-56-779999999887514864333 Q gi|254781038|r 62 VLDILIKQTLLRANMQISDMDSIAVTAGPGLMG-GL-IVGLMTAKAISYVSHKPFYAI 117 (363) Q Consensus 62 ~l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~-~L-~vG~~~Ak~la~~~~~Pli~V 117 (363) .|-..++++|++-|+++++|-. .-.-||+.- || +-...+-|++|- +++|++|| T Consensus 92 ~~~~~~~~al~~~g~~~~~i~~--~E~d~~LGnGGLG~LAgd~lkSaAd-LgiP~vG~ 146 (824) T 2gj4_A 92 ALENACDEATYQLGLDMEELEE--IEEDAGLGNGGLGRLAACFLDSMAT-LGLAAYGY 146 (824) T ss_dssp TCHHHHHHHHHHTTCCHHHHHT--TSCCEEECCSHHHHHHHHHHHHHHH-TTCCEEEE T ss_pred CCHHHHHHHHHHCCCCHHHHHH--CCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEE T ss_conf 8689999999980999899985--4767677884079999999999986-89897999 No 143 >2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae} Probab=21.25 E-value=33 Score=13.13 Aligned_cols=54 Identities=15% Similarity=0.038 Sum_probs=35.8 Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH-HHHHHHHHHHHHHCCCCCCCH Q ss_conf 99999999998389822453687406643012567-799999998875148643330 Q gi|254781038|r 63 LDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLI-VGLMTAKAISYVSHKPFYAIN 118 (363) Q Consensus 63 l~~li~~~l~~a~~~~~~id~Iavt~gPG~~~~L~-vG~~~Ak~la~~~~~Pli~Vn 118 (363) |-..++++|.+-|+++++|-..---.|=|.. ||- -...+-|++|- +++|++||- T Consensus 84 ~~~~~~~al~~~g~~~~~~~~~e~d~~LGnG-GLG~LAgd~LkSasd-Lg~P~vGvG 138 (796) T 2c4m_A 84 LVDEAAAATRELGHELTDILEIENDAALGNG-GLGRLAACFLDSAVT-QDYPVTGYG 138 (796) T ss_dssp CHHHHHHHHHHTTCCHHHHHTTCCCBCCCCS-HHHHHHHHHHHHHHH-TTCCEEEEE T ss_pred CHHHHHHHHHHHCCCHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHHH-CCCCEEEEC T ss_conf 7999999999819999999853778788884-369999999999986-697979981 No 144 >1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A* Probab=21.21 E-value=16 Score=15.38 Aligned_cols=51 Identities=16% Similarity=0.187 Sum_probs=29.8 Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCC Q ss_conf 77999999988751486433303677653013225679984399970687479998375643 Q gi|254781038|r 97 IVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHY 158 (363) Q Consensus 97 ~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~~~PfL~LlvSGGhT~l~~~~~~~~~ 158 (363) -.|..+--+.|++++||++.+.-- .....| +.|.+.|+++.+.-..+..+| T Consensus 92 d~Gt~~E~G~A~a~~kpvi~~~~~----------~~~~~~-~NlM~~~~~~~~~~~~el~~y 142 (157) T 1f8y_A 92 DVGLGMELGYALSQGKYVLLVIPD----------EDYGKP-INLMSWGVSDNVIKMSQLKDF 142 (157) T ss_dssp CHHHHHHHHHHHHTTCEEEEEECG----------GGTTSC-BCHHHHHHCSEEEEGGGTTTC T ss_pred CCCHHHHHHHHHHCCCCEEEEECC----------CCCCCC-HHHHHHHHHHHCCCHHHHHHC T ss_conf 866799999999879968999668----------856872-017976033323769999655 No 145 >3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase, transferase; 1.60A {Burkholderia pseudomallei 1710B} PDB: 3gwe_A Probab=21.05 E-value=33 Score=13.10 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=34.2 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEE-EECCCCCHH-HHHHHHHHHHHHHHHHHCCCCCCCHHHH Q ss_conf 969999999999838982245368-740664301-2567799999998875148643330367 Q gi|254781038|r 61 DVLDILIKQTLLRANMQISDMDSI-AVTAGPGLM-GGLIVGLMTAKAISYVSHKPFYAINHLE 121 (363) Q Consensus 61 ~~l~~li~~~l~~a~~~~~~id~I-avt~gPG~~-~~L~vG~~~Ak~la~~~~~Pli~VnH~~ 121 (363) +.-....+++|++++++.+|||.| .+|..|... ++... .....+....+.+.+.++.-. T Consensus 82 dmA~~Aa~~aL~~agi~~~dIdllI~~t~t~~~~~p~~a~--~v~~~l~~~~~~~~~di~~~C 142 (365) T 3gwa_A 82 DLAYEAARKLFAQGAVGADQVDFVILCTQAPDYVLPTSAC--MLQHRLGIPTHAGALDVNLGC 142 (365) T ss_dssp HHHHHHHHHHHHTTSCCGGGCCEEEEEESSCSCSBSCHHH--HHHHHTTCCTTSEEEEEECST T ss_pred HHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCHHHH--HHHHHHCCCCCEEEEEHHHHH T ss_conf 9999999999997599989989999973379877980588--876540268976897664047 No 146 >2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A* Probab=20.92 E-value=33 Score=13.08 Aligned_cols=93 Identities=19% Similarity=0.373 Sum_probs=43.7 Q ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCC------CCCCEEEEEECCCEE Q ss_conf 89822453687406643012567799999998875148643330367765301322567------998439997068747 Q gi|254781038|r 75 NMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDI------AFPYLVLLVSGGHTQ 148 (363) Q Consensus 75 ~~~~~~id~Iavt~gPG~~~~L~vG~~~Ak~la~~~~~Pli~VnH~~aH~~~~~l~~~~------~~PfL~LlvSGGhT~ 148 (363) ++.+...-.|-||-|= +++|-=|+. |-+++..+.--=+-|..+. +-|.|+-++ +.--+-++--||-|. T Consensus 17 ~~~~~~~KyIfVtGGV--~SglGKGi~-aaSig~lLk~~g~~V~~~K---~DPYlNvD~GTMsP~eHGEVfVt~DG~EtD 90 (294) T 2c5m_A 17 NLYFQSMKYILVTGGV--ISGIGKGII-ASSVGTILKSCGLHVTSIK---IDPYINIDAGTFSPYEHGEVFVLDDGGEVD 90 (294) T ss_dssp ----CCCEEEEEEECS--STTSCHHHH-HHHHHHHHHTTTCCEECCE---EECBCCCCC--------------------- T ss_pred CCCCCCEEEEEEECCE--ECCCCCHHH-HHHHHHHHHHCCCCEEEEE---CCCCEECCCCCCCHHHHCCEEECCCCCCCC T ss_conf 2434530599991883--036640799-9999999997797146763---266312388878856727188635547104 Q ss_pred EEEECCCCCCEE-----CCCCCCCCHHHHHHHHH Q ss_conf 999837564300-----02233630023888898 Q gi|254781038|r 149 ILLVRDVAHYDR-----LGTTIDDALGECFDKIA 177 (363) Q Consensus 149 l~~~~~~~~~~i-----lg~T~Dda~Ge~~DK~a 177 (363) | +.+.||+ +-..-....|+.|.++- T Consensus 91 l----DlG~YERFl~~~l~~~~niTtGkiy~~Vi 120 (294) T 2c5m_A 91 L----DLGNYERFLDIRLTKDNNLTTGKIYQYVI 120 (294) T ss_dssp ------------------CCTTEEEHHHHHHHHH T ss_pred C----CCCCCHHHCCCCCCCCCCCCHHHHHHHHH T ss_conf 7----77530110257867767641348999999 Done!