RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781038|ref|YP_003065451.1| putative DNA-binding/iron
metalloprotein/AP endonuclease [Candidatus Liberibacter asiaticus str.
psy62]
(363 letters)
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase;
endopeptidase activity, protein kinase activity; HET:
TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A*
2vwb_A*
Length = 540
Score = 288 bits (738), Expect = 1e-78
Identities = 103/342 (30%), Positives = 151/342 (44%), Gaps = 27/342 (7%)
Query: 8 VIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILI 67
+G+E + ++T V +V S GE+L I G+ P AA H + LI
Sbjct: 8 CLGLEGTAEKTGVGIV---TSDGEVLFN---KTIMYKPPKQGINPREAADHHAETFPKLI 61
Query: 68 KQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTA 127
K+ + +++D IA + GPGL L V A+ +S KP +NH HI
Sbjct: 62 KEAFEVVDK--NEIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEIG 119
Query: 128 RLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAKSLGLPYPGG 187
+LT + P L L VSGG+TQ++ Y G T+D A+G C D+ A+ + LP+PGG
Sbjct: 120 KLTTEAEDP-LTLYVSGGNTQVI-AYVSKKYRVFGETLDIAVGNCLDQFARYVNLPHPGG 177
Query: 188 VEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASF 247
IE+ A G K D +FSGL T+ + A + + DIC S
Sbjct: 178 PYIEELARKG----KKLVDLPYTVKGMDIAFSGLLTAAMRAYDA-----GERLEDICYSL 228
Query: 248 QVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAP 307
Q +L ++ K +++ GGVA+N+ +R L +C F P
Sbjct: 229 QEYAFSMLTEITERALAHTNKG------EVMLVGGVAANNRLREMLKAMCEGQNVDFYVP 282
Query: 308 PARLCTDNAVMIAWAALERMEAGL--PADDLSISPRSRWPLD 347
P C DN MIAW L + G D+ I P R +
Sbjct: 283 PKEFCGDNGAMIAWLGLLMHKNGRWMSLDETKIIPNYRTDMV 324
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn
dependent nucleotide phosphatase, metalloprotease,
hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus
abyssi} PDB: 2ivo_A 2ivp_A*
Length = 330
Score = 236 bits (602), Expect = 6e-63
Identities = 97/341 (28%), Positives = 154/341 (45%), Gaps = 24/341 (7%)
Query: 8 VIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILI 67
+GIE + + +V ++LA + GG+ P+ AA H ++ L+
Sbjct: 3 ALGIEGTAHTLGIGIVS----EDKVLANVFDTL---TTEKGGIHPKEAAEHHARLMKPLL 55
Query: 68 KQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTA 127
++ L A + + D+D IA + GPGL L V A+A++ KP +NH H+
Sbjct: 56 RKALSEAGVSLDDIDVIAFSQGPGLGPALRVVATAARALAVKYRKPIVGVNHCIAHVEIT 115
Query: 128 RLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAKSLGLPYPGG 187
++ L VSGG+TQ +L + Y G T+D +G D A+ LGL +PGG
Sbjct: 116 KMFGVKDPVGLY--VSGGNTQ-VLALEGGRYRVFGETLDIGIGNAIDVFARELGLGFPGG 172
Query: 188 VEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDIADICASF 247
++EK A G+ K + P + D SFSGL T + + + D+ SF
Sbjct: 173 PKVEKLAEKGE-KYIELPYAVKG---MDLSFSGLLTEAIRKYRSGK----YRVEDLAYSF 224
Query: 248 QVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLHGFRFVAP 307
Q T L + R ++ +V+ GGVA+N+ +R L + G +F P
Sbjct: 225 QETAFAALVEVTE------RAVAHTEKDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVP 278
Query: 308 PARLCTDNAVMIAWAALERMEAGLPADDLSISPRSRWPLDE 348
P LC DN MIA+ L +AG+ + ++ DE
Sbjct: 279 PYDLCRDNGAMIAYTGLRMYKAGISFRLEETIVKQKFRTDE 319
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase,
metal-binding, metalloprotease, protease, zinc, keops
complex, ATPase, metal ION binding; 3.02A {Thermoplasma
acidophilum}
Length = 334
Score = 223 bits (568), Expect = 6e-59
Identities = 97/348 (27%), Positives = 155/348 (44%), Gaps = 26/348 (7%)
Query: 1 MSKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHV 60
M + V+G+E + + ++ ILA GG+ P AA H
Sbjct: 3 MDPMI--VLGLEGTAHTISCGIID----ESRILAM---ESSMYRPKTGGIRPLDAAVHHS 53
Query: 61 DVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHL 120
+V+D +I + L +A + I D+D I + GPGL L V A+ IS ++ KP +NH
Sbjct: 54 EVIDTVISRALEKAKISIHDIDLIGFSMGPGLAPSLRVTATAARTISVLTGKPIIGVNHP 113
Query: 121 EGHILTARLTDDIAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAKSL 180
GHI R P +L VSGG+TQ++ + Y LG T+D +G DK A+
Sbjct: 114 LGHIEIGRRVTGAIDPV-MLYVSGGNTQVIAHVNG-RYRVLGETLDIGIGNMIDKFAREA 171
Query: 181 GLPYPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSFSGLKTSVQKTICAFDVLEKQDI 240
G+P+PGG EIEK A+ G D +FSG+ T+ + + +E
Sbjct: 172 GIPFPGGPEIEKLAMKGTKLLDLPYSV----KGMDTAFSGILTAALQYLKTGQAIEDISY 227
Query: 241 ADICASFQVTVVRILQARLKQGFLLFRKAFPHKQAVLVVSGGVASNHFIRASLIDLCVLH 300
+ +F + V + R + + ++++GGVA N +R + ++
Sbjct: 228 SIQETAFAMLVEVLE-----------RALYVSGKDEILMAGGVALNRRLRDMVTNMAREA 276
Query: 301 GFRFVAPPARLCTDNAVMIAWAALERMEAGLPADDLSISPRSRWPLDE 348
G R C DN +MIA AAL ++G+ + R+ +DE
Sbjct: 277 GIRSYLTDREYCMDNGIMIAQAALLMYKSGVRMSVEETAVNPRFRIDE 324
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo
sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 2i7p_A*
Length = 360
Score = 75.4 bits (185), Expect = 2e-14
Identities = 36/208 (17%), Positives = 65/208 (31%), Gaps = 18/208 (8%)
Query: 93 MGGLIVGLM-TAKAISYVSHKPFYAINHLEGHILTARLTDDI-AFPYLVLLVSGGHTQIL 150
+ LI GL+ + +Y N + + +P L L+ G IL
Sbjct: 131 LDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLDNPYPML-LVNMGSGVSIL 189
Query: 151 LVRDVAHYDRLGTTIDDALGECFDKIAKSLGLPYPGGVEIEKAALMGDGKRFKFPCPLVQ 210
V +Y R+ T G F + L E + A GD +
Sbjct: 190 AVYSKDNYKRVTGTS--LGGGTFLGLCCLL-TGCETFEEALEMAAKGDSTNVDKLVKDIY 246
Query: 211 GTLCDFSFSGLKTSVQKTICAFDVLEKQDI----ADICASFQVTVVRILQARLKQGFLLF 266
G D+ GL+ S + + +++ D+ + VT+ + G +
Sbjct: 247 G--GDYERFGLQGSAVASSFGNMMSKEKRDSISKEDLARATLVTITNNI------GSIAR 298
Query: 267 RKAFPHKQAVLVVSGGVASNHFIRASLI 294
A +V G + + L+
Sbjct: 299 MCALNENIDRVVFVGNFLRINMVSMKLL 326
>2gel_A Putative GRAM negative resuscitation promoting factor; YEAZ, RPF,
actin-like-fold, glycoprotease, chaperone; 2.05A
{Salmonella typhimurium LT2} PDB: 2gem_A 1okj_A
Length = 231
Score = 72.3 bits (176), Expect = 2e-13
Identities = 29/178 (16%), Positives = 65/178 (36%), Gaps = 33/178 (18%)
Query: 8 VIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILI 67
++ I+T+ + +VA+ +G I A E+ R H + ++
Sbjct: 3 ILAIDTATEACSVALWN----NGTINAHF----------------ELCPREHTQRILPMV 42
Query: 68 KQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTA 127
++ L + ++++D++A GPG G+ +G+ A+ ++ ++ P ++ L A
Sbjct: 43 QEILAASGASLNEIDALAFGRGPGSFTGVRIGIGIAQGLALGANLPMIGVSTLATMAQGA 102
Query: 128 RLTDDIAFPYLVL-------------LVSGGHTQILLVRDVAHYDRLGTTIDDALGEC 172
+ + G Q V +R+G + GE
Sbjct: 103 WRKTGATRVLAAIDARMGEVYWAEYQRDAQGVWQGEETEAVLKPERVGERLKQLSGEW 160
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural
genomics, joint center for structural genomics, JCSG;
2.50A {Thermotoga maritima MSB8} SCOP: c.55.1.9 c.55.1.9
Length = 218
Score = 55.2 bits (132), Expect = 2e-08
Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 21/121 (17%)
Query: 8 VIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILI 67
V+ ++TS + + GE L E + H ++L +++
Sbjct: 15 VLALDTS-QRIRIGLR-----KGEDLFEIS---------------YTGEKKHAEILPVVV 53
Query: 68 KQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTA 127
K+ L ++++ D+D + V GPG + GL VG+ T + P +N E +
Sbjct: 54 KKLLDELDLKVKDLDVVGVGIGPGGLTGLRVGIATVVGLVSPYDIPVAPLNSFEMTAKSC 113
Query: 128 R 128
Sbjct: 114 P 114
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 47.2 bits (112), Expect = 5e-06
Identities = 76/475 (16%), Positives = 127/475 (26%), Gaps = 211/475 (44%)
Query: 28 SHGEILAEAVLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRA--NMQISD-MDSI 84
SHG + E VL VP + L+ N + + +
Sbjct: 12 SHGSL--EHVLL-----------VPT----------ASFFIASQLQEQFNKILPEPTEGF 48
Query: 85 AVTAGPGLMGGLIVGLMTAKAISYVSHK------PFY------AINHLE-----G---HI 124
A P L K + YVS + + E G H
Sbjct: 49 AADDEPTT----PAEL-VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103
Query: 125 LTARLTDDIAFPYLVLLVSGGHTQILLVRDV--AHY-------DRLGTTIDDAL------ 169
L A+L + T ++ +++ + + AL
Sbjct: 104 LAAKLLQEND------------TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 170 ----------G-----ECFDKIAKSLGLPYPGGVE--IEKAA-----LMGDGKRFKFPCP 207
G + F+++ L Y V I+ +A L+ +
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELR-DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 208 LVQGTLCDFSFSGLKTSVQKTICAFDVL------EKQ-DIAD-----------IC----A 245
QG ++L D D I A
Sbjct: 211 --QG--------------------LNILEWLENPSNTPDK-DYLLSIPISCPLIGVIQLA 247
Query: 246 SFQVTVVRILQARLKQGFLLFRKAFP----HKQAVLVVSGGVAS----NHFIRASLIDLC 297
+ VT ++L G R H Q + V + +A F + +
Sbjct: 248 HYVVT-AKLLG--FTPG--ELRSYLKGATGHSQGL-VTAVAIAETDSWESFFVSVRKAIT 301
Query: 298 VLH--GFR----F---VAPPARL--CTDNAV-----MIAWAALERME---------AGLP 332
VL G R + PP+ L +N M++ + L + + + LP
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 333 ADD-LSIS-------------PRS-----RWPLDE-KAP-----SKIGSGKRGVK 362
A + IS P+S L + KAP S+I +R +K
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLNLT-LRKAKAPSGLDQSRIPFSERKLK 415
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.014
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 21/43 (48%)
Query: 323 ALERMEAGLP--ADDLSISPRSRWPLDEKAPSKIGSGKRGVKA 363
AL++++A L ADD AP+ +KA
Sbjct: 21 ALKKLQASLKLYADD-------------SAPA------LAIKA 44
Score = 28.4 bits (62), Expect = 2.6
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 31/59 (52%)
Query: 236 EKQDIADICASFQVTVVRILQARLKQGFLLFR-KAFPHKQAVLVVSGGVASNHFIRASL 293
EKQ + LQA LK L+ + P +A I+A++
Sbjct: 18 EKQALKK------------LQASLK----LYADDSAP----------ALA----IKATM 46
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory,
pyridoxal phosphate, one-carbon metabolism,
PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus
stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A*
1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 1yjz_A* 1yjy_A* 2vgu_A*
2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* 2vmr_A* 2vms_A* 2vmt_A*
2vmu_A* 2vmq_A* ...
Length = 405
Score = 30.0 bits (67), Expect = 0.78
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 12/89 (13%)
Query: 90 PGLMGGLIVGLMTAKAISYVSHKPFYAINHLEGHILTARLTDDIAFPYLVLL------VS 143
PG+ GG ++ ++ AKA++ F + R+ D+ L VS
Sbjct: 252 PGIQGGPLMHVIAAKAVA------FGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVS 305
Query: 144 GGHTQILLVRDVAHYDRLGTTIDDALGEC 172
GG LL+ D+ G T + L E
Sbjct: 306 GGTDNHLLLVDLRPQQLTGKTAEKVLDEV 334
>2iqt_A Fructose-bisphosphate aldolase class 1; TIM berrel, structural
genomics, PSI-2, protein structure initiative; 2.46A
{Porphyromonas gingivalis W83}
Length = 296
Score = 29.5 bits (66), Expect = 1.1
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 37 VLSQIDQHGHYGGVVPEVAARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGL 96
+ ++D H E+ R + LD + + +L+ + D + P ++
Sbjct: 178 LEPEVDIHCPEKAKAEEILKRELLAQLDKMTEPVMLKITIPTVDNFYKEIIEHPMMLR-- 235
Query: 97 IVGL 100
+V L
Sbjct: 236 VVAL 239
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability,
potential tentoxin binding site, hydrolase; 3.20A
{Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1kmh_B*
Length = 498
Score = 29.2 bits (65), Expect = 1.6
Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 3/103 (2%)
Query: 1 MSKIKKTVIGIETSCDETAVAVVRRKDSHGEILAEAVLSQIDQHGHYGGVVPEVAARAHV 60
+S ++K +G + V I ++ D G V EV
Sbjct: 12 VSTLEKKNLGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGN 71
Query: 61 D-VLDILIKQTL-LRANMQISDMDS-IAVTAGPGLMGGLIVGL 100
+ V + + T L M++ D + ++V G +G + L
Sbjct: 72 NRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGPTLGRIFNVL 114
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase,
disease mutation, DNA replication, DNA-binding,
DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo
sapiens}
Length = 1172
Score = 27.2 bits (60), Expect = 5.9
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 233 DVLEKQDIADICASFQVTV------VRILQARLKQGFLLFRKAFPHK 273
++ K + DI +FQ + V +Q LF + PH
Sbjct: 308 ELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLERCPHP 354
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.324 0.139 0.411
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,103,695
Number of extensions: 144103
Number of successful extensions: 541
Number of sequences better than 10.0: 1
Number of HSP's gapped: 519
Number of HSP's successfully gapped: 22
Length of query: 363
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 269
Effective length of database: 3,414,294
Effective search space: 918445086
Effective search space used: 918445086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.0 bits)