HHsearch alignment for GI: 254781039 and conserved domain: PRK00436

Probab=97.20  E-value=0.0021  Score=41.82  Aligned_cols=99  Identities=19%  Similarity=0.212  Sum_probs=61.3

Q ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE-CHHHH-HHHHHHHC
Q ss_conf             877999778-8789999999997799818999449899999997789842279881787438973-16877-55554411
Q gi|254781039|r    4 YSTIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSS-DHTLL-QNADIVLF   80 (329)
Q Consensus         4 ~~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~-~~~~l-~~adiIii   80 (329)
T Consensus         1 m~kVaIvGAtG~vG~eli~lL~~hp~~ei~~las~~saGk~i~~~~------p~l~~~~~~~~~~~~~~~~~~~~Divf~   74 (345)
T PRK00436          1 MIKVAIVGASGYTGGELLRLLLNHPEVEIVYLTSRSSAGKPLSDLH------PHLRGLVDLVLEPLDPEEIAAGADVVFL   74 (345)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHC------CCCCCCCCCEEEECCHHHHCCCCCEEEE
T ss_conf             9199998966188999999998099867999975786897377858------1103777874764998894269999998


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf             2217776665555332035685055237520
Q gi|254781039|r   81 ATSSKGYGEALNFYSNWLKESAEIIICSKGF  111 (329)
Q Consensus        81 avps~~~~~~l~~i~~~l~~~~~ii~~sKGi  111 (329)
T Consensus        75 alp~~~S~~~~~~~~---~~g~~VID~Ssdf  102 (345)
T PRK00436         75 ALPHGVSMELAPQLL---EAGVKVIDLSADF  102 (345)
T ss_pred             CCCHHHHHHHHHHHH---HCCCEEEECCHHH
T ss_conf             898389999999998---6698799897012