HHsearch alignment for GI: 254781039 and conserved domain: PRK12771
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional.
Probab=96.91 E-value=0.0034 Score=40.50 Aligned_cols=124 Identities=20% Similarity=0.217 Sum_probs=66.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHH---------------------HHHHHHCCCCCCCCCCCCCCC
Q ss_conf 88779997788789999999997799818999449899---------------------999997789842279881787
Q gi|254781039|r 3 NYSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEIL---------------------MQQLEDTRINAKALPGIKLSP 61 (329)
Q Consensus 3 ~~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~---------------------~~~i~~~~~n~~~lp~i~l~~ 61 (329)
T Consensus 136 tgkkVAVIGaGPAGLsaA~~La~~G-~~VtVfE~~~~~GGml~~GIP~yRLP~~vl~~ei~~i~~~--------GV~~~~ 206 (560)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYQLRRLG-HAVTIFEAGPKLGGMMRYGIPGYRLPRDVLDAEIQRILDL--------GVEVKL 206 (560)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHC--------CCEEEE
T ss_conf 8998999897789999999999769-8589967678889888356875447589999999999964--------967983
Q ss_pred CEEEEEC--HH-HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHH--HHHHHCCCEECC
Q ss_conf 4389731--68-775555441122177766655553320356850552375200025854310123--321001210012
Q gi|254781039|r 62 LLNFSSD--HT-LLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSE--KVLPSHSISVLS 136 (329)
Q Consensus 62 ~i~~t~~--~~-~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~--~~~~~~~~~vls 136 (329)
T Consensus 207 n~~vg~dit~~~L~~~yDAV~la~Ga~~~r~l--~i~G---~d------~~gV~-~al~fL~~~~~g~~~~~Gk~VvVIG 274 (560)
T PRK12771 207 GVRVGEDITLEQLEGDYDAVFVAIGAQLGKRL--PIPG---ED------AANVL-DAVSFLRAVEEGEPPKLGKRVVVIG 274 (560)
T ss_pred CCEECCCCCHHHHHCCCCEEEECCCCCCCCCC--CCCC---CC------CCCCE-EHHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf 87844656799971778889991687877608--9788---77------65524-0599999975689755688689989
Q ss_pred CCCHHHHHHHH
Q ss_conf 88817899876
Q gi|254781039|r 137 GPGFARDIAQG 147 (329)
Q Consensus 137 GPs~A~Eia~~ 147 (329)
T Consensus 275 GGntAmD~art 285 (560)
T PRK12771 275 GGNTAMDAART 285 (560)
T ss_pred CCCHHHHHHHH
T ss_conf 98228999999