HHsearch alignment for GI: 254781039 and conserved domain: TIGR00873
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating; InterPro: IPR006113 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) , . Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved . The protein is a homodimer in which the monomers act independently : each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet . NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket . This model does not specify whether the cofactor is NADP only, NAD only, or both.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt.
Probab=98.12 E-value=5e-06 Score=58.88 Aligned_cols=129 Identities=17% Similarity=0.199 Sum_probs=90.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCH-
Q ss_conf 7999778878999999999779981899944989999999778984227988178743897316877555544112217-
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATSS- 84 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavps- 84 (329)
T Consensus 1 diGviGLAVMG~NLaLN~~d~GF-~V~VyNRt~~Ktd~fl~~~~~gk~i~g~~-----~ieeFV~~Le~PRKImLMVkAG 74 (480)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVAVYNRTPEKTDEFLKERAKGKKIVGAY-----SIEEFVQSLERPRKIMLMVKAG 74 (480)
T ss_pred CCCEEEECHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCCCCCCCCCC-----CHHHHHHHCCCCCEEEEEEECC
T ss_conf 95158604135789998874698-27997268479999986037888533432-----6799998506887288877538
Q ss_pred HHH--HHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHC-------CCEECCCCCH
Q ss_conf 776--6655553320356850552375200025854310123321001-------2100128881
Q gi|254781039|r 85 KGY--GEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSH-------SISVLSGPGF 140 (329)
Q Consensus 85 ~~~--~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~-------~~~vlsGPs~ 140 (329)
T Consensus 75 ~pVdaD~~I~~L~P~LE~GDiIIDGGNS~Y~DT~RR~~eL~~~Gi~FvG~GvSGGEeGAl~GPSi 139 (480)
T TIGR00873 75 APVDADAVINSLLPLLEKGDIIIDGGNSHYKDTERRYKELKAKGILFVGVGVSGGEEGALKGPSI 139 (480)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHCCCCCC
T ss_conf 85377899999644358998887588788466578999998649816730132453021378877