HHsearch alignment for GI: 254781039 and conserved domain: TIGR01317
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=95.90 E-value=0.013 Score=36.69 Aligned_cols=79 Identities=22% Similarity=0.347 Sum_probs=52.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH-----------------H-----HHHHHHHCCCCCCCCCCCCCC-
Q ss_conf 87799977887899999999977998189994498-----------------9-----999999778984227988178-
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKE-----------------I-----LMQQLEDTRINAKALPGIKLS- 60 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~-----------------~-----~~~~i~~~~~n~~~lp~i~l~- 60 (329)
T Consensus 151 GkkVAVVGSGPAGLAaA~qLnrAG-H~VTVfER~DR~GGLL~YGIPnmKLdK~e~v~RRi~~l~aEG~--~FvtnteiGd 227 (517)
T TIGR01317 151 GKKVAVVGSGPAGLAAADQLNRAG-HTVTVFEREDRVGGLLRYGIPNMKLDKEEIVDRRIDLLEAEGV--DFVTNTEIGD 227 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCCCCCCC
T ss_conf 866899756757999999985358-8389974367888630248887433738899999999874784--2017830046
Q ss_pred --CCEEEEE----C--HH-HHHHHHHHHCCCCHH
Q ss_conf --7438973----1--68-775555441122177
Q gi|254781039|r 61 --PLLNFSS----D--HT-LLQNADIVLFATSSK 85 (329)
Q Consensus 61 --~~i~~t~----~--~~-~l~~adiIiiavps~ 85 (329)
T Consensus 228 Wdenskitnlsk~di~~~~L~~~fDAVVLa~Ga~ 261 (517)
T TIGR01317 228 WDENSKITNLSKKDISADELKEDFDAVVLATGAT 261 (517)
T ss_pred CCCCCCEECCCCCCCCHHHHHHHCCEEEEECCCC
T ss_conf 5344420002234268799871469389833788