HHsearch alignment for GI: 254781039 and conserved domain: TIGR03466
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=92.83 E-value=0.084 Score=31.42 Aligned_cols=38 Identities=29% Similarity=0.451 Sum_probs=31.3
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 77999778-8789999999997799818999449899999
Q gi|254781039|r 5 STIFVIGA-GAFGTALSSVIASRGLANVTLLGRKEILMQQ 43 (329)
Q Consensus 5 ~kI~ViGa-Ga~GtAlA~~La~~g~~~V~l~~r~~~~~~~ 43 (329)
T Consensus 1 MriLVTGgtGfiG~~l~~~L~~~G-~~V~~l~r~~~~~~~ 39 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLERG-EEVRVLVRPTSDRRN 39 (328)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCCHHH
T ss_conf 949998677799999999999784-989999899986556