HHsearch alignment for GI: 254781039 and conserved domain: cd01065

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.38  E-value=0.0006  Score=45.36  Aligned_cols=74  Identities=19%  Similarity=0.262  Sum_probs=55.5

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf             87799977887899999999977998189994498999999977898422798817874389731687755554411221
Q gi|254781039|r    4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS   83 (329)
Q Consensus         4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp   83 (329)
T Consensus        19 ~k~vlIlGaGGaarai~~aL~~~g~~~I~i~nR~~~r~~~l~~~~~~~--~------~~~~~~~~~~~~~~~dliIN~tp   90 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGEL--G------IAIAYLDLEELLAEADLIINTTP   90 (155)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHC--C------CCEEECCHHHHHCCCCEEEECCC
T ss_conf             999999867589999999999719982288608999999999985013--6------64010453443156887987677


Q ss_pred             HH
Q ss_conf             77
Q gi|254781039|r   84 SK   85 (329)
Q Consensus        84 s~   85 (329)
T Consensus        91 ~G   92 (155)
T cd01065          91 VG   92 (155)
T ss_pred             CC
T ss_conf             87