HHsearch alignment for GI: 254781039 and conserved domain: cd01078
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.86 E-value=0.0037 Score=40.26 Aligned_cols=78 Identities=29% Similarity=0.462 Sum_probs=52.0
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC---HHHHHHHHHHHC
Q ss_conf 7799977-887899999999977998189994498999999977898422798817874389731---687755554411
Q gi|254781039|r 5 STIFVIG-AGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSD---HTLLQNADIVLF 80 (329)
Q Consensus 5 ~kI~ViG-aGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~---~~~l~~adiIii 80 (329)
T Consensus 29 ~~~~V~G~tG~vG~~~A~~lA~~G-a~v~lv~R~~ek~~~~a~~-i~~r~--g~~~~~-~~~~~~~~~~~~l~~adiV~~ 103 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRDLERAQKAADS-LRARF--GEGVGA-VETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH-HHHHC--CCCCCC-CCCCCHHHHHHHHCCCCEEEE
T ss_conf 889998588578999999999839-9799995878889999999-99970--987311-357887789977466989996
Q ss_pred CCCHHHHH
Q ss_conf 22177766
Q gi|254781039|r 81 ATSSKGYG 88 (329)
Q Consensus 81 avps~~~~ 88 (329)
T Consensus 104 a~a-AGv~ 110 (194)
T cd01078 104 AGA-AGVE 110 (194)
T ss_pred CCH-HHHH
T ss_conf 427-7788