HHsearch alignment for GI: 254781039 and conserved domain: cd01338
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.13 E-value=0.0014 Score=42.93 Aligned_cols=103 Identities=19% Similarity=0.246 Sum_probs=62.0
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHC---CC-C--EEEEEECCHHH--HHH--HHHCCCCCCCCCCCCCCCCEEEEEC-HHH
Q ss_conf 877999778-87899999999977---99-8--18999449899--999--9977898422798817874389731-687
Q gi|254781039|r 4 YSTIFVIGA-GAFGTALSSVIASR---GL-A--NVTLLGRKEIL--MQQ--LEDTRINAKALPGIKLSPLLNFSSD-HTL 71 (329)
Q Consensus 4 ~~kI~ViGa-Ga~GtAlA~~La~~---g~-~--~V~l~~r~~~~--~~~--i~~~~~n~~~lp~i~l~~~i~~t~~-~~~ 71 (329)
T Consensus 2 p~KV~IiGAaG~IG~~la~~la~g~l~g~~~~v~l~L~Di~~~~~~l~G~amDl~~~------a~~~~~~v~~~~~~~~a 75 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDC------AFPLLAEIVITDDPNVA 75 (322)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHCHHCCCCCEEEEEEECCCCCCCCCCEEEEEHHHC------CCCCCCCEEEECCHHHH
T ss_conf 709999899968999999999711130799726999975757566676577445326------76545877974887898
Q ss_pred HHHHHHHHCCC--C--------------HHHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 75555441122--1--------------77766655553320356850552375200
Q gi|254781039|r 72 LQNADIVLFAT--S--------------SKGYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 72 l~~adiIiiav--p--------------s~~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
T Consensus 76 ~~~aDvVvitaG~prkPG~tR~DLl~~Na~I~~~~~~~i~~~a~p~~~vivvsNPvd 132 (322)
T cd01338 76 FKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCN 132 (322)
T ss_pred HCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 378878999368789989818999998689999999999975798838999578188