HHsearch alignment for GI: 254781039 and conserved domain: cd01483
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.86 E-value=0.0014 Score=42.92 Aligned_cols=101 Identities=20% Similarity=0.337 Sum_probs=61.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCC-CCCCC--CC--------CCCCCCEEEE-------E
Q ss_conf 79997788789999999997799818999449899999997789-84227--98--------8178743897-------3
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRI-NAKAL--PG--------IKLSPLLNFS-------S 67 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~-n~~~l--p~--------i~l~~~i~~t-------~ 67 (329)
T Consensus 1 kVlivG~GglG~~va~~L~~~Gv~~i~ivD~D~v~~~Nl~Rq~~~~~~dvG~~Ka~~a~~~l~~~np~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCH
T ss_conf 99999979899999999999379719999789875001464225898894922489999999856898389999456896
Q ss_pred --CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf --16877555544112217776665555332035685055237
Q gi|254781039|r 68 --DHTLLQNADIVLFATSSKGYGEALNFYSNWLKESAEIIICS 108 (329)
Q Consensus 68 --~~~~l~~adiIiiavps~~~~~~l~~i~~~l~~~~~ii~~s 108 (329)
T Consensus 81 ~~~~~~~~~~dvvi~~~D~~~~r~~l~~~~~~--~~ip~i~~~ 121 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNIAVRRALNRACKE--LGIPVIDAG 121 (143)
T ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH--CCCCEEEEE
T ss_conf 46999975999999877999999999999998--699889963