HHsearch alignment for GI: 254781039 and conserved domain: cd05290
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.88 E-value=4.9e-05 Score=52.42 Aligned_cols=101 Identities=23% Similarity=0.307 Sum_probs=62.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCHHHHHH--HHHCCCCCCCCCCCCCCCCEEE-EECHHHHHHHHHHHCC
Q ss_conf 79997788789999999997799-818999449899999--9977898422798817874389-7316877555544112
Q gi|254781039|r 6 TIFVIGAGAFGTALSSVIASRGL-ANVTLLGRKEILMQQ--LEDTRINAKALPGIKLSPLLNF-SSDHTLLQNADIVLFA 81 (329)
Q Consensus 6 kI~ViGaGa~GtAlA~~La~~g~-~~V~l~~r~~~~~~~--i~~~~~n~~~lp~i~l~~~i~~-t~~~~~l~~adiIiia 81 (329)
T Consensus 1 KI~IIGaG~VG~~~A~~l~~~~~~~elvL~Di~~~~a~g~a~Dl~h~~~-----~~~~~~~~~~~~~y~~~~~aDiVVit 75 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATA-----LTYSTNTKIRAGDYDDCADADIIVIT 75 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCC-----CCCCCCEEECCCCHHHHCCCCEEEEC
T ss_conf 9899996989999999998569988799992889823799998761203-----58998658667998994699999986
Q ss_pred C--CH--H--------------HHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 2--17--7--------------766655553320356850552375200
Q gi|254781039|r 82 T--SS--K--------------GYGEALNFYSNWLKESAEIIICSKGFE 112 (329)
Q Consensus 82 v--ps--~--------------~~~~~l~~i~~~l~~~~~ii~~sKGi~ 112 (329)
T Consensus 76 aG~~~kpg~t~~R~dL~~~N~~I~~~i~~~i~~~-~p~~i~ivvsNPvD 123 (307)
T cd05290 76 AGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKV-TKEAVIILITNPLD 123 (307)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCHH
T ss_conf 7776589998358888885789999999998613-99749998479388