HHsearch alignment for GI: 254781039 and conserved domain: pfam01113
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=96.85 E-value=0.0051 Score=39.33 Aligned_cols=118 Identities=22% Similarity=0.283 Sum_probs=67.8
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECH-HHHHHHHHHHCCC
Q ss_conf 7999778-878999999999779981-899944989999999778984227988178743897316-8775555441122
Q gi|254781039|r 6 TIFVIGA-GAFGTALSSVIASRGLAN-VTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDH-TLLQNADIVLFAT 82 (329)
Q Consensus 6 kI~ViGa-Ga~GtAlA~~La~~g~~~-V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~-~~l~~adiIiiav 82 (329)
T Consensus 2 kV~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~--~~~~---d~---~~~~~~~~~~~~~~~~~~~~~~DVvIDFS 73 (122)
T pfam01113 2 KVAVVGASGRMGRELIKAILEAPDFELVAAVDRPGSS--LLGS---DA---GELAGPLGVPVTDDLEEVLADADVLIDFT 73 (122)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCC--CCCC---CC---CCCCCCCCCEECCCHHHHCCCCCEEEEEC
T ss_conf 8999889887899999999858996899999438961--2254---31---00146787111244777515788899906
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCH
Q ss_conf 1777666555533203568505523752000258543101233210012100128881
Q gi|254781039|r 83 SSKGYGEALNFYSNWLKESAEIIICSKGFEYNSGMLLSSYSEKVLPSHSISVLSGPGF 140 (329)
Q Consensus 83 ps~~~~~~l~~i~~~l~~~~~ii~~sKGi~~~t~~~~se~i~~~~~~~~~~vlsGPs~ 140 (329)
T Consensus 74 ~p~~~~~~~~~~~---~~~~~~ViGTTG~s~~~~~~i~~~a~------~ipi~~apNF 122 (122)
T pfam01113 74 TPEATLENLELAL---KHGKPLVIGTTGFTEEQLAELKEAAK------KIPIVIAPNF 122 (122)
T ss_pred CHHHHHHHHHHHH---HCCCCEEEECCCCCHHHHHHHHHHHC------CCCEEECCCC
T ss_conf 8789999999999---67998899899999999999999844------5988982799