HHsearch alignment for GI: 254781039 and conserved domain: pfam01488
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=98.11 E-value=7.6e-06 Score=57.70 Aligned_cols=76 Identities=26% Similarity=0.339 Sum_probs=58.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCC
Q ss_conf 87799977887899999999977998189994498999999977898422798817874389731687755554411221
Q gi|254781039|r 4 YSTIFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSSDHTLLQNADIVLFATS 83 (329)
Q Consensus 4 ~~kI~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~~~~~l~~adiIiiavp 83 (329)
T Consensus 12 ~~~vlVIGaG~~~~~~~~~L~~~g~~~i~v~nRt~~ka~~la~~~~------~~~~-~~~~~~~l~~~l~~~DivI~aT~ 84 (134)
T pfam01488 12 GKKVLLIGAGEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFG------GEEV-EALPLDELEELLAEADIVISATS 84 (134)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCC------CCCE-EEEECHHHHHHHHHCCEEEEECC
T ss_conf 8989999960999999999997599889995475789999999849------9725-89851354413631999999259
Q ss_pred HHH
Q ss_conf 777
Q gi|254781039|r 84 SKG 86 (329)
Q Consensus 84 s~~ 86 (329)
T Consensus 85 s~~ 87 (134)
T pfam01488 85 APT 87 (134)
T ss_pred CCC
T ss_conf 997