HHsearch alignment for GI: 254781039 and conserved domain: pfam02254
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=96.98 E-value=0.0018 Score=42.27 Aligned_cols=91 Identities=19% Similarity=0.288 Sum_probs=61.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE---CHH-HHHHHHHHHCCC
Q ss_conf 9997788789999999997799818999449899999997789842279881787438973---168-775555441122
Q gi|254781039|r 7 IFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSS---DHT-LLQNADIVLFAT 82 (329)
Q Consensus 7 I~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~---~~~-~l~~adiIiiav 82 (329)
T Consensus 1 viI~G~g~~G~~la~~L~~~~--~v~vId~d~~~~~~~~~~~~~vi~-G--------D~~~~~~L~~a~i~~a~~vi~~~ 69 (115)
T pfam02254 1 IIIIGYGRVGRSLAEELREGG--PVVVIDKDPERVEELREEGVPVVV-G--------DATDEEVLEEAGIEDADAVVAAT 69 (115)
T ss_pred CEEECCCHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHCCCEEEE-E--------ECCCHHHHHHHCCCCCCEEEEEC
T ss_conf 999878889999999998089--999999987998778866986999-9--------56886678761920287999962
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 17776665555332035685055237
Q gi|254781039|r 83 SSKGYGEALNFYSNWLKESAEIIICS 108 (329)
Q Consensus 83 ps~~~~~~l~~i~~~l~~~~~ii~~s 108 (329)
T Consensus 70 ~~d~~n~~~~~~~r~~~~~~~iiar~ 95 (115)
T pfam02254 70 GDDEANILIVLLARELNPAKKIIARA 95 (115)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 98499999999999978998099998