HHsearch alignment for GI: 254781039 and conserved domain: pfam02254

>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=96.98  E-value=0.0018  Score=42.27  Aligned_cols=91  Identities=19%  Similarity=0.288  Sum_probs=61.8

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE---CHH-HHHHHHHHHCCC
Q ss_conf             9997788789999999997799818999449899999997789842279881787438973---168-775555441122
Q gi|254781039|r    7 IFVIGAGAFGTALSSVIASRGLANVTLLGRKEILMQQLEDTRINAKALPGIKLSPLLNFSS---DHT-LLQNADIVLFAT   82 (329)
Q Consensus         7 I~ViGaGa~GtAlA~~La~~g~~~V~l~~r~~~~~~~i~~~~~n~~~lp~i~l~~~i~~t~---~~~-~l~~adiIiiav   82 (329)
T Consensus         1 viI~G~g~~G~~la~~L~~~~--~v~vId~d~~~~~~~~~~~~~vi~-G--------D~~~~~~L~~a~i~~a~~vi~~~   69 (115)
T pfam02254         1 IIIIGYGRVGRSLAEELREGG--PVVVIDKDPERVEELREEGVPVVV-G--------DATDEEVLEEAGIEDADAVVAAT   69 (115)
T ss_pred             CEEECCCHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHCCCEEEE-E--------ECCCHHHHHHHCCCCCCEEEEEC
T ss_conf             999878889999999998089--999999987998778866986999-9--------56886678761920287999962


Q ss_pred             CHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf             17776665555332035685055237
Q gi|254781039|r   83 SSKGYGEALNFYSNWLKESAEIIICS  108 (329)
Q Consensus        83 ps~~~~~~l~~i~~~l~~~~~ii~~s  108 (329)
T Consensus        70 ~~d~~n~~~~~~~r~~~~~~~iiar~   95 (115)
T pfam02254        70 GDDEANILIVLLARELNPAKKIIARA   95 (115)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             98499999999999978998099998