HHsearch alignment for GI: 254781040 and conserved domain: pfam01878
>pfam01878 DUF55 Protein of unknown function DUF55. This family of proteins have no known function.
Probab=100.00 E-value=0 Score=348.67 Aligned_cols=132 Identities=48% Similarity=0.808 Sum_probs=126.1
Q ss_pred CCCEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCC-CCCEEEEEECCCCCCCCCC----
Q ss_conf 74500115886677899858688877777658999999985388978999945888-7634888860446667764----
Q gi|254781040|r 2 AYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKG-REIVGIFEVITCTYPDPTA---- 76 (143)
Q Consensus 2 ~yWL~KsEP~~~s~~~~~~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~-~~ivgi~~v~~~~y~d~t~---- 76 (143)
T Consensus 1 ~YWL~ksep~~~s~~~~~~~~~--~~wdGVrN~qarn~lr~mk~GD~v~fYhs~~~~~~ivGi~~V~~e~y~D~t~~d~~ 78 (143)
T pfam01878 1 AYWLMKSEPDHYSIDDLKGEGG--TPWDGVRNYQARNFLRAMKVGDLVFFYHSNEKPPAIVGIAEVVSEAYPDPTAFDPE 78 (143)
T ss_pred CCEEEECCCCCCCHHHHHHCCC--CCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCC
T ss_conf 9402733887678999975699--87677336999999986557877999872789975789999951441688645677
Q ss_pred -----CCCCCEEEEECHHHCCCCCCCCHHHHHCCCCCCCCCCCCC-CCCCEEECCHHHHHHHHHH
Q ss_conf -----4567227985032210799758889840820114601005-7455011689999999997
Q gi|254781040|r 77 -----EQSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVS-SRLSVQPVTTDEYLEVCRM 135 (143)
Q Consensus 77 -----~~~p~W~~VdVk~~~~l~~pVsL~~lK~~~~L~~m~Llk~-~RLSV~PVt~~ew~~I~~L 135 (143)
T Consensus 79 ~~~~d~~~~~w~~Vdv~~~~~~~~pv~L~~Lk~~~~l~~m~lv~~g~RLSv~pVt~~~~~~I~~~ 143 (143)
T pfam01878 79 SPYYDPENPRWYRVDVKFVEKLKRPVTLKELKAEPELKDLSLVRQGSRLSVMPVTEEEWKLILEL 143 (143)
T ss_pred CCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHCCCCCCCCHHHCCCCCCCEEECCHHHHHHHHCC
T ss_conf 76768778977899999845238742899996298802391011588652786699999999719