HHsearch alignment of GI: 254781040 and MMDB domain: 3eop_A_

>3eop_A (A:) Thymocyte nuclear protein 1; protein of unknown function, alternative splicing, nucleus, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00  E-value=0  Score=424.59  Aligned_cols=142  Identities=37%  Similarity=0.655  Sum_probs=135.0

Q ss_pred             CCCCEECCCCCC---------CCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCC-CCCCEEEEEECCCC
Q ss_conf             974500115886---------67789985868887777765899999998538897899994588-87634888860446
Q gi|254781040|r    1 MAYWLVKSEPSE---------WSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNK-GREIVGIFEVITCT   70 (143)
Q Consensus         1 M~yWL~KsEP~~---------~s~~~~~~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~-~~~ivgi~~v~~~~   70 (143)
                      |+||||||||++         ||||||.++++++++||||||||||||||+||+||+|||||||| +|+||||++|++++
T Consensus         1 M~YWL~KsEP~~r~~~g~d~~fSidDl~~~~~~~~~WdGVRNyqArn~lR~Mk~GD~~ffYHS~~~~pgIvGiaeV~~~~   80 (176)
T 3eop_A            1 MSHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHSNCKEPGIAGLMKIVKEA   80 (176)
T ss_dssp             -CEEEEEEBSSCCBSSSSBCBCCSHHHHTSGGGEEECCCCCCHHHHHHHHHCCTTCEEEEEECCSSSCEEEEEEEEEEEE
T ss_pred             CCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEEEEEEC
T ss_conf             96022522788765567656365999986568898778815399999998654678899985378886368999999714


Q ss_pred             CCCCCC-------------CCCCCEEEEECHHHCCCCCCCCHHHHHCCC--------CCCCCCCCCCCCCCEEECCHHHH
Q ss_conf             667764-------------456722798503221079975888984082--------01146010057455011689999
Q gi|254781040|r   71 YPDPTA-------------EQSSCWECVDICAVCSMPCPVSLMAIKANP--------RLSSMILIVSSRLSVQPVTTDEY  129 (143)
Q Consensus        71 y~d~t~-------------~~~p~W~~VdVk~~~~l~~pVsL~~lK~~~--------~L~~m~Llk~~RLSV~PVt~~ew  129 (143)
                      |||+|+             +++|+|+||||+|+++|++||+|++||+++        +|++|.|+||+||||+|||++||
T Consensus        81 ypD~ta~dp~s~YyD~ks~~e~prW~~VdV~~~~k~~~pv~L~~lK~~~~~~~~~~~aL~~m~L~r~~RLSV~PVt~~ew  160 (176)
T 3eop_A           81 YPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEF  160 (176)
T ss_dssp             EECGGGTCTTSTTCCTTCCTTSCSCEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHTCTTSSCHHHHCTTCSEEEECHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCEECHHHHHHCHHHCCCCCCCCCCCEEEECCCCCEEECCHHHH
T ss_conf             55785546666645876656699779999998043487043999863721113456630158142058552564699999


Q ss_pred             HHHHHHCCCCCCC
Q ss_conf             9999972799989
Q gi|254781040|r  130 LEVCRMGKLSNPP  142 (143)
Q Consensus       130 ~~I~~L~~~~~p~  142 (143)
                      ++||+|+++.+..
T Consensus       161 ~~I~~l~~~~~~~  173 (176)
T 3eop_A          161 DFVLSLEELEHHH  173 (176)
T ss_dssp             HHHHHGGGCC---
T ss_pred             HHHHHHHCCCCCC
T ss_conf             9999987774434