HHSEARCH alignment of GI: 254781040 and SCOP domain: d2ar1a1

Alignment
>d2ar1a1 b.122.1.8 (A:7-163) Hypothetical protein LmjF36.6870 {Leishmania major [TaxId: 5664]}
Probab=100.00  E-value=0  Score=407.19  Aligned_cols=137  Identities=42%  Similarity=0.677  Sum_probs=129.6

Q ss_pred             CCCCEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCC-CCCEEEEEECCCCCCCCCCC--
Q ss_conf             974500115886677899858688877777658999999985388978999945888-76348888604466677644--
Q gi|254781040|r    1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKG-REIVGIFEVITCTYPDPTAE--   77 (143)
Q Consensus         1 M~yWL~KsEP~~~s~~~~~~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~-~~ivgi~~v~~~~y~d~t~~--   77 (143)
                      |+||||||||++|||+|+.+++  +++||||||||||||||+|++||+||||||||+ ++|+|+++|++++|||+|++  
T Consensus         5 m~YWL~KsEP~~ys~~dl~~~~--~~~WdGVrN~qArn~lr~Mk~GD~~~fYHS~~~~~~i~g~~~v~~~~~pd~t~~d~   82 (157)
T d2ar1a1           5 IHYWLLKSEPHKFSIDDLAKQK--TSPWDGVRNYAARNNMRAMSVGDKVLFYHSNTKEPGVAGLAEVVRLAYDDFTALDK   82 (157)
T ss_dssp             CCEEEEEECTTTSCHHHHHHHS--EEECCCCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEEECGGGGCT
T ss_pred             CEEEEEECCCCCCCHHHHHHHC--CCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCC
T ss_conf             6167883188758899995408--87766720199999998675788899997488887157999983244677654567


Q ss_pred             -----------CCCCEEEEECHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCC
Q ss_conf             -----------56722798503221079975888984082011460100574550116899999999972799
Q gi|254781040|r   78 -----------QSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLSVQPVTTDEYLEVCRMGKLS  139 (143)
Q Consensus        78 -----------~~p~W~~VdVk~~~~l~~pVsL~~lK~~~~L~~m~Llk~~RLSV~PVt~~ew~~I~~L~~~~  139 (143)
                                 ++|+|+||||+|+++|++||+|++||+++.|++|.||||+||||||||++||++||+||+..
T Consensus        83 ~s~y~Dpks~~~~p~w~~VdV~~v~~~~~pVtL~eLK~~~~L~~m~Llr~~RLSV~PVt~~ew~~I~~L~~~~  155 (157)
T d2ar1a1          83 TSEYFDPKATKEKNPWKMVDVKFVARWDTVLTLHELKSRRELQKMALFTQRRLSVQPVSASEYAYILRMNEEQ  155 (157)
T ss_dssp             TSTTCCTTCCSSCCCCEEEEEEEEEEEEEEEEHHHHTTCGGGTTCHHHHCSSCSEEEECHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHCCCCCCCCCEEECCCCCEEECCHHHHHHHHHHHCCC
T ss_conf             7652276455678866899999702208962799974584602295752286654555999999999986444


SCOP domain information

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein LmjF36.6870
species: Leishmania major [TaxId: 5664]