HHSEARCH alignment of GI: 254781040 and SCOP domain: d2gbsa1

Alignment
>d2gbsa1 b.122.1.8 (A:2-137) Hypothetical protein RPA0253 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=100.00  E-value=0  Score=421.69  Aligned_cols=136  Identities=60%  Similarity=0.998  Sum_probs=132.9

Q ss_pred             CCCEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf             74500115886677899858688877777658999999985388978999945888763488886044666776445672
Q gi|254781040|r    2 AYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREIVGIFEVITCTYPDPTAEQSSC   81 (143)
Q Consensus         2 ~yWL~KsEP~~~s~~~~~~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~ivgi~~v~~~~y~d~t~~~~p~   81 (143)
                      +||||||||++|||||++++++++++||||||||||||||+|++||+||||||||+++|||+++|++++|||+| +++|+
T Consensus         1 aYWL~KsEP~~~siddl~~~~~~~~~WdGVRNyqArn~mr~M~~GD~~~fYHS~~~~~ivg~~~v~~~~~pd~t-~~~p~   79 (136)
T d2gbsa1           1 AYWLVKSEPSVWSWDQQVAKGAAGEAWTGVRNHSAKLHMVAMRRGDRAFYYHSNEGKEIVGIAEIIREAYPDPT-DASGK   79 (136)
T ss_dssp             CEEEEEECTTTSCHHHHHTTTTTCEECCCCCCHHHHHHHHHCCTTCEEEEEETTTTCEEEEEEEEEEEEEECTT-CTTSC
T ss_pred             CCEEEECCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEECCCCCCC-CCCCC
T ss_conf             91025148987899999875898885777164999999997515778999853888886799754411467866-66667


Q ss_pred             EEEEECHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCC
Q ss_conf             279850322107997588898408201146010057455011689999999997279
Q gi|254781040|r   82 WECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLSVQPVTTDEYLEVCRMGKL  138 (143)
Q Consensus        82 W~~VdVk~~~~l~~pVsL~~lK~~~~L~~m~Llk~~RLSV~PVt~~ew~~I~~L~~~  138 (143)
                      |++|||+|+++|++||+|++||+++.|++|.|+||+||||+|||++||++||+|||+
T Consensus        80 w~~Vdvk~~~~~~~~V~L~~lK~~~~L~~m~Llk~~RLSV~PVt~~ew~~I~~L~g~  136 (136)
T d2gbsa1          80 FVCVDIKADKPLKTPVTLAAVKAEPRLADMALMKYSRLSVQPVTAEEWKLVCKMGGL  136 (136)
T ss_dssp             SEEEEEEEEEEEEEEEEHHHHHHCTTGGGSHHHHCTTCSSEEECHHHHHHHHHHTTC
T ss_pred             CEEEECCCCCCCCCCEEHHHHHCCCCCCCCCHHHCCCCEEEECCHHHHHHHHHHCCC
T ss_conf             465605547706760609997356540348521248730334799999999986298


SCOP domain information

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein RPA0253
species: Rhodopseudomonas palustris [TaxId: 1076]