HHSEARCH alignment of GI: 254781040 and SCOP domain: d2hd9a1

Alignment
>d2hd9a1 b.122.1.8 (A:1-145) Hypothetical protein PH1033 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=97.66  E-value=3.1e-06  Score=55.71  Aligned_cols=120  Identities=20%  Similarity=0.406  Sum_probs=74.9

Q ss_pred             CCCCEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCC--------CCCEEEEEECCCCCC
Q ss_conf             974500115886677899858688877777658999999985388978999945888--------763488886044666
Q gi|254781040|r    1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKG--------REIVGIFEVITCTYP   72 (143)
Q Consensus         1 M~yWL~KsEP~~~s~~~~~~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~--------~~ivgi~~v~~~~y~   72 (143)
                      |+|||.=+..+-+-+--  ..+    .| || +...+|-++.|++||.++||-++..        ..++|+++|.++.|.
T Consensus         1 MtYWi~v~s~e~~~~~~--~~g----~~-~~-~~~k~~~~~rikpGD~li~Y~~~~~~~~~~~~~q~f~ai~~V~~~~~~   72 (145)
T d2hd9a1           1 MTYWICITNRENWEVIK--RHN----VW-GV-PKKHKNTLSRVKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYV   72 (145)
T ss_dssp             CCEEEEEECHHHHHHHH--HHC----EE-EE-CGGGHHHHTTCCTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEE
T ss_pred             CCEEEEECCHHHHHHHH--HCC----EE-EC-CCCCHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCEE
T ss_conf             92489747899999998--688----88-61-577630685378999999996763457886556379999999144320


Q ss_pred             CCCCC----CCCC---EEEEECHHHCCCCCCCCHHHHHCCCCCCCCCCCCCC--------CCCEEECCHHHHHHHHHH
Q ss_conf             77644----5672---279850322107997588898408201146010057--------455011689999999997
Q gi|254781040|r   73 DPTAE----QSSC---WECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSS--------RLSVQPVTTDEYLEVCRM  135 (143)
Q Consensus        73 d~t~~----~~p~---W~~VdVk~~~~l~~pVsL~~lK~~~~L~~m~Llk~~--------RLSV~PVt~~ew~~I~~L  135 (143)
                      |.|.-    +...   =+-++|++....  +|++..|.     ..|..++..        |--+.++++..++.|.+.
T Consensus        73 d~t~i~~~~~~~~~~~P~R~~v~~~~~~--ev~i~~l~-----~~L~fi~~k~~W~~y~~r~g~~~I~~~D~~lI~~~  143 (145)
T d2hd9a1          73 DFSRIFKPHRGGKETYPYRVKIKPIKIG--EINFKPLI-----NDLKFIKNKKRWSMHFFGKAMRELPEEDYKLIEKL  143 (145)
T ss_dssp             CCCCCSCCTTSSCCCCCEEEEEEEEEEE--EEESGGGG-----GGCTTCCCSTTGGGGTTTCSEEEECHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCEEEEEEEEEEEECC--CCCHHHHH-----HHHHHHCCCHHHHHHHHCCCCEECCHHHHHHHHHH
T ss_conf             2661466533578647899984786406--52088978-----67776328443537776477634698999999997


SCOP domain information

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein PH1033
species: Pyrococcus horikoshii [TaxId: 53953]