RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781040|ref|YP_003065453.1| hypothetical protein
CLIBASIA_04710 [Candidatus Liberibacter asiaticus str. psy62]
         (143 letters)



>gnl|CDD|32770 COG2947, COG2947, Uncharacterized conserved protein [Function
           unknown].
          Length = 156

 Score =  174 bits (443), Expect = 6e-45
 Identities = 76/157 (48%), Positives = 96/157 (61%), Gaps = 17/157 (10%)

Query: 1   MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSN-KGRE 59
            AYWL+KSEP  +S +M +  G   E W GVRNYQARN MR M++GD GFFYHSN K   
Sbjct: 2   AAYWLMKSEPDVFSIEMLKAVGE--EPWDGVRNYQARNFMRDMKIGDLGFFYHSNCKPPG 59

Query: 60  IVGIFEVITCTYPDPTAEQSSC-------------WECVDICAVCSMPCPVSLMAIKANP 106
           IVG+ EV    +PDPT    +              W CVD+  V  +P PV+L  +KANP
Sbjct: 60  IVGLAEVCALAHPDPTQFDPASPYYDPKATPEDPRWYCVDVRFVRKLPRPVTLKELKANP 119

Query: 107 RLSSMILIV-SSRLSVQPVTTDEYLEVCRMGKLSNPP 142
            L+ M L+V  +RLSVQPVT +E+ E+ R+G L  PP
Sbjct: 120 ELAEMSLLVKGNRLSVQPVTPEEWKEILRLGGLDAPP 156


>gnl|CDD|145181 pfam01878, DUF55, Protein of unknown function DUF55.  This family
           of proteins have no known function.
          Length = 143

 Score =  155 bits (395), Expect = 3e-39
 Identities = 66/145 (45%), Positives = 84/145 (57%), Gaps = 13/145 (8%)

Query: 2   AYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSN-KGREI 60
           AYWL+KSEP  +S    + +G  G  W GVRNYQARN +R M+VGD  FFYHSN K   I
Sbjct: 1   AYWLMKSEPDHYSIDDLKGEG--GTPWDGVRNYQARNFLRAMKVGDLVFFYHSNEKPPAI 58

Query: 61  VGIFEVITCTYPDPTAEQSSC---------WECVDICAVCSMPCPVSLMAIKANPRLSSM 111
           VGI EV++  YPDPTA              W  VD+  V  +  PV+L  +KA P L  +
Sbjct: 59  VGIAEVVSEAYPDPTAFDPESPYYDPENPRWYRVDVKFVEKLKRPVTLKELKAEPELKDL 118

Query: 112 ILI-VSSRLSVQPVTTDEYLEVCRM 135
            L+   SRLSV PVT +E+  +  +
Sbjct: 119 SLVRQGSRLSVMPVTEEEWKLILEL 143


>gnl|CDD|38593 KOG3383, KOG3383, KOG3383, Uncharacterized conserved protein
           [Function unknown].
          Length = 187

 Score =  111 bits (279), Expect = 5e-26
 Identities = 60/166 (36%), Positives = 81/166 (48%), Gaps = 27/166 (16%)

Query: 3   YWLVKSEPS---------EWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYH 53
           YWL+K+EP          E+SW+  +  G     W GVRNYQARNN+R M++GD  FFYH
Sbjct: 10  YWLMKTEPEPRYVKGINVEFSWEDLESNGGKISKWDGVRNYQARNNLRSMKLGDLAFFYH 69

Query: 54  SN-KGREIVGIFEVITCTYPDPTA-------------EQSSCWECVDICAVCSMPCPVSL 99
           SN K   IVG+ E+    YPD                 Q+  W  VD+ A+  M   V L
Sbjct: 70  SNCKSPCIVGLVEISREWYPDDAEGVENDPYYDPESTPQNPRWGAVDVQAIGEMRRCVDL 129

Query: 100 MAIKAN----PRLSSMILIVSSRLSVQPVTTDEYLEVCRMGKLSNP 141
             +K +      L  M+L    RLS+ PV  +E+  +C +G    P
Sbjct: 130 KELKMHKDKGIILKGMVLFRRPRLSIVPVEEEEWNFICELGNGFEP 175


>gnl|CDD|30596 COG0247, GlpC, Fe-S oxidoreductase [Energy production and
           conversion].
          Length = 388

 Score = 27.6 bits (60), Expect = 1.4
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 80  SCWECVDICAVCSMPCPVSLMAIKANPR-LSSMILIVSSRLSVQPVTTDEYLEVC 133
           S  +CV  C  C+  CP        +PR    ++  V    +       E L+ C
Sbjct: 7   SLDKCVH-CGFCTNVCPSYRATEALSPRGRIVLVREVLRGKAPGDEEVYEALDTC 60


>gnl|CDD|112456 pfam03639, Glyco_hydro_81, Glycosyl hydrolase family 81.  Family of
           eukaryotic beta-1,3-glucanases.
          Length = 694

 Score = 27.6 bits (61), Expect = 1.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 12  EWSWKMQQDKGRVGEAWTGV 31
           EW+WK+      VGE W G+
Sbjct: 635 EWNWKIPPIINSVGEGWKGI 654


>gnl|CDD|39007 KOG3803, KOG3803, KOG3803, Transcription factor containing C2HC
           type Zn finger [Transcription].
          Length = 968

 Score = 27.1 bits (59), Expect = 1.6
 Identities = 9/37 (24%), Positives = 15/37 (40%)

Query: 44  RVGDKGFFYHSNKGREIVGIFEVITCTYPDPTAEQSS 80
              ++    HS+ GRE V   +   C+  D  +   S
Sbjct: 138 DEAEECLLIHSDDGREKVDDSQPPLCSSDDNESNSES 174


>gnl|CDD|38284 KOG3074, KOG3074, KOG3074, Transcriptional regulator of the PUR
           family, single-stranded-DNA-binding [Transcription].
          Length = 263

 Score = 26.1 bits (57), Expect = 3.2
 Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 7/49 (14%)

Query: 39  NMRKMRVGDKGFFYHSNKGREIVGIFEVITCTYPDPTAEQS-----SCW 82
               + V +K F +   K +   G+F  I+    + +   S       W
Sbjct: 179 EGTSITVDNKRFLFDVGKNKR--GVFVRISEVKSNGSYRNSITVPFKAW 225


>gnl|CDD|34275 COG4656, RnfC, Predicted NADH:ubiquinone oxidoreductase, subunit
           RnfC [Energy production and conversion].
          Length = 529

 Score = 26.0 bits (57), Expect = 3.5
 Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 9/38 (23%)

Query: 71  YPDPTAEQSS--CWECVDICAVCSMPCPVSLMAIKANP 106
             +P  EQS   C  C D        CPV+L+  +   
Sbjct: 358 LLEPIKEQSCIRCSLCADA-------CPVNLLPQQLYW 388


>gnl|CDD|38190 KOG2979, KOG2979, KOG2979, Protein involved in DNA repair [General
           function prediction only].
          Length = 262

 Score = 26.2 bits (57), Expect = 3.5
 Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 63  IFEVITCTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLSVQ 122
             + I    PDP  E     E +    V S   P+S   I  NP +S     V  R S+ 
Sbjct: 149 AAKDINMKIPDPEEEDED--EELIGQEVFSNRDPISKKPIV-NPVISKKCGHVYDRDSIM 205

Query: 123 PVTTDEYLEVCRMGKLSNP 141
            +  DE    C +    NP
Sbjct: 206 QILCDEITIRCPVLGCENP 224


>gnl|CDD|34436 COG4827, COG4827, Predicted transporter [General function
           prediction only].
          Length = 239

 Score = 26.0 bits (57), Expect = 3.7
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 6/46 (13%)

Query: 88  CAVCSMPCPVSLMAIKANPRLSSMILIVSSRLSVQPVTTDEYLEVC 133
               SMPCPV L A      ++  I+++S  LS+  V     + + 
Sbjct: 107 FLAISMPCPVCLGA------VAVSIMLLSQILSLSGVKIGLLVGIA 146


>gnl|CDD|113611 pfam04845, PurA, PurA ssDNA and RNA-binding protein.  This family
           represents most of the length of the protein.
          Length = 218

 Score = 25.6 bits (56), Expect = 4.8
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 39  NMRKMRVGDKGFFYH--SNKGREIVGIFEV 66
               + V +K F++   SNK    + I EV
Sbjct: 160 EGTSLTVDNKRFYFDVGSNKRGVFMRISEV 189


>gnl|CDD|38865 KOG3661, KOG3661, KOG3661, Uncharacterized conserved protein
           [Function unknown].
          Length = 1019

 Score = 25.4 bits (55), Expect = 5.0
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 67  ITCTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIKANPRL-----SSMILIVSSRLSV 121
           +T     PT  QS+ W      +      P+S+  ++  PR      S  IL  S  LS 
Sbjct: 174 VTALPLHPTRAQSNLWNPQGPLSDGPGSLPLSIAPVRKRPRHDPGAPSPGILQDSDGLSG 233

Query: 122 QPVT 125
             + 
Sbjct: 234 SYLD 237


>gnl|CDD|36489 KOG1275, KOG1275, KOG1275, PAB-dependent poly(A) ribonuclease,
           subunit PAN2 [Replication, recombination and repair].
          Length = 1118

 Score = 25.7 bits (56), Expect = 5.2
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 13/52 (25%)

Query: 96  PVSLMA----IKANPRLSSMILIVSSRLSVQPVTTDEYLEVCRMGKLSNPPL 143
           P+        ++ +P L++ + + S     Q V T           LSNPP 
Sbjct: 261 PIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTAT---------LSNPPA 303


>gnl|CDD|38461 KOG3251, KOG3251, KOG3251, Golgi SNAP receptor complex member
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 213

 Score = 25.6 bits (56), Expect = 5.3
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 6/49 (12%)

Query: 5   LVKSEP-----SEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDK 48
           LV  EP     +    ++ Q    V    T +R    RNN R+ +  ++
Sbjct: 55  LVSKEPPKSRQAAR-LRVDQLLEDVEHLQTSLRTSMNRNNRREQQARER 102


>gnl|CDD|176946 CHL00001, rpoB, RNA polymerase beta subunit.
          Length = 1070

 Score = 25.6 bits (57), Expect = 5.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 41  RKMRVGDKGFFYHSNKG 57
           R+++VGDK    H NKG
Sbjct: 812 REIQVGDKVAGRHGNKG 828


>gnl|CDD|39784 KOG4584, KOG4584, KOG4584, Uncharacterized conserved protein
           [General function prediction only].
          Length = 348

 Score = 25.3 bits (55), Expect = 6.8
 Identities = 13/45 (28%), Positives = 17/45 (37%)

Query: 65  EVITCTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIKANPRLS 109
           EVI C    P     +  E  ++ A  +  C V L AI     L 
Sbjct: 230 EVILCANSSPALNDVTYSELKELAAELANDCNVLLKAIDTGQLLV 274


>gnl|CDD|31237 COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75
           kD subunit (chain G) [Energy production and conversion].
          Length = 693

 Score = 24.9 bits (54), Expect = 8.2
 Identities = 10/21 (47%), Positives = 11/21 (52%)

Query: 70  TYPDPTAEQSSCWECVDICAV 90
           TY D   E   C  CVD+C V
Sbjct: 178 TYLDQPLESELCGNCVDVCPV 198


>gnl|CDD|133131 cd06600, GH31_MGAM-like, This family includes the following closely
           related glycosyl hydrolase family 31 (GH31) enzymes:
           maltase-glucoamylase (MGAM), sucrase-isomaltase (SI),
           lysosomal acid alpha-glucosidase (GAA), neutral
           alpha-glucosidase C (GANC), the alpha subunit of neutral
           alpha-glucosidase AB (GANAB), and alpha-glucosidase II.
           MGAM is one of the two enzymes responsible for
           catalyzing the last glucose-releasing step in starch
           digestion. SI is implicated in the digestion of dietary
           starch and major disaccharides such as sucrose and
           isomaltose, while GAA degrades glycogen in the lysosome,
           cleaving both alpha-1,4 and alpha-1,6 glucosidic
           linkages. MGAM and SI are anchored to small-intestinal
           brush-border epithelial cells. The absence of SI from
           the brush border membrane or its malfunction is
           associated with malabsorption disorders such as
           congenital sucrase-isomaltase deficiency (CSID). The
           domain architectures of MGAM and SI include two tandem
           GH31 catalytic domains, an N-terminal domain found near
           the membrane-bound end and a C-terminal luminal domain. 
           Both of the tandem GH31 domains of MGAM and SI are
           included in this family. The domain architecture of GAA
           includes an N-terminal TFF (trefoil factor family)
           domain in addition to the GH31 catalytic domain.
           Deficient GAA expression causes pompe disease, an
           autosomal recessive genetic disorder also known as
           glycogen storage disease type II (GSDII). GANC and GANAB
           are key enzymes in glycogen metabolism that hydrolyze
           terminal, non-reducing 1,4-linked alpha-D-glucose
           residues from glycogen in the endoplasmic reticulum.
           Alpha-glucosidase II is a GH31 enzyme, found in bacteria
           and plants, which has exo-alpha-1,4-glucosidase and
           oligo-1,6-glucosidase activities. Alpha-glucosidase II
           has been characterized in Bacillus
           thermoamyloliquefaciens where it forms a homohexamer.
           This family also includes the MalA alpha-glucosidase
           from Sulfolobus sulfataricus and the AglA
           alpha-glucosidase from Picrophilus torridus. MalA is
           part of the carbohydrate-metabolizing machinery that
           allows this organism to utilize carbohydrates, such as
           maltose, as the sole carbon and energy source. The
           MGAM-like family corresponds to subgroup 1 in the Ernst
           et al classification of GH31 enzymes.
          Length = 317

 Score = 24.8 bits (54), Expect = 9.1
 Identities = 13/36 (36%), Positives = 14/36 (38%)

Query: 47  DKGFFYHSNKGREIVGIFEVITCTYPDPTAEQSSCW 82
           DKG F     G   VG     T  YPD T   +  W
Sbjct: 102 DKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREW 137


>gnl|CDD|31788 COG1600, COG1600, Uncharacterized Fe-S protein [Energy production
           and conversion].
          Length = 337

 Score = 24.6 bits (53), Expect = 9.9
 Identities = 8/25 (32%), Positives = 9/25 (36%), Gaps = 4/25 (16%)

Query: 72  PDPTAEQSSCWECVDICAVCSMPCP 96
           PD   E+  C  C      C   CP
Sbjct: 178 PDRPEEEDHCGSCT----RCLDACP 198


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.320    0.133    0.433 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,776,672
Number of extensions: 81345
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 26
Length of query: 143
Length of database: 6,263,737
Length adjustment: 85
Effective length of query: 58
Effective length of database: 4,426,972
Effective search space: 256764376
Effective search space used: 256764376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.0 bits)