RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781040|ref|YP_003065453.1| hypothetical protein
CLIBASIA_04710 [Candidatus Liberibacter asiaticus str. psy62]
(143 letters)
>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural
genomics, PSI, protein structure initiative; 1.30A
{Agrobacterium tumefaciens str} SCOP: b.122.1.8
Length = 155
Score = 187 bits (476), Expect = 8e-49
Identities = 95/142 (66%), Positives = 111/142 (78%)
Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREI 60
YWL KSEP +WSW+MQ+ KG GE WTGVRNYQARNNMR M++GDKGFFYHSN+G ++
Sbjct: 2 ANYWLYKSEPFKWSWEMQKAKGETGEEWTGVRNYQARNNMRAMKIGDKGFFYHSNEGLDV 61
Query: 61 VGIFEVITCTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLS 120
VGI EV ++PD TAE W+CVDI AVC MP PVSL +KANP+L M L+ S RLS
Sbjct: 62 VGIVEVCALSHPDSTAEGDLKWDCVDIRAVCDMPQPVSLKDVKANPKLEKMSLVTSMRLS 121
Query: 121 VQPVTTDEYLEVCRMGKLSNPP 142
VQPVT +EYLEVCRMG L+NPP
Sbjct: 122 VQPVTEEEYLEVCRMGGLANPP 143
>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural
genomics, COG2947, PSI, protein structure initiative;
NMR {Rhodopseudomonas palustris CGA009} SCOP: b.122.1.8
Length = 145
Score = 175 bits (446), Expect = 3e-45
Identities = 80/139 (57%), Positives = 97/139 (69%), Gaps = 1/139 (0%)
Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREI 60
+AYWLVKSEPS WSW Q KG GEAWTGVRN+ A+ +M MR GD+ F+YHSN+G+EI
Sbjct: 1 VAYWLVKSEPSVWSWDQQVAKGAAGEAWTGVRNHSAKLHMVAMRRGDRAFYYHSNEGKEI 60
Query: 61 VGIFEVITCTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLS 120
VGI E+I YPDPT CVDI A + PV+L A+KA PRL+ M L+ SRLS
Sbjct: 61 VGIAEIIREAYPDPTDASGKFV-CVDIKADKPLKTPVTLAAVKAEPRLADMALMKYSRLS 119
Query: 121 VQPVTTDEYLEVCRMGKLS 139
VQPVT +E+ VC+MG L
Sbjct: 120 VQPVTAEEWKLVCKMGGLL 138
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, structural genomics of pathogenic protozoa
consortium; 1.60A {Leishmania major} SCOP: b.122.1.8
Length = 172
Score = 166 bits (421), Expect = 2e-42
Identities = 55/151 (36%), Positives = 72/151 (47%), Gaps = 16/151 (10%)
Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREI 60
+ YWL+KSEP ++S + W GVRNY ARNNMR M VGDK FYHSN
Sbjct: 19 IHYWLLKSEPHKFSIDDLAKQK--TSPWDGVRNYAARNNMRAMSVGDKVLFYHSNTKEPG 76
Query: 61 VGIFEVITCT-YPDPTAE-------------QSSCWECVDICAVCSMPCPVSLMAIKANP 106
V + Y D TA + + W+ VD+ V ++L +K+
Sbjct: 77 VAGLAEVVRLAYDDFTALDKTSEYFDPKATKEKNPWKMVDVKFVARWDTVLTLHELKSRR 136
Query: 107 RLSSMILIVSSRLSVQPVTTDEYLEVCRMGK 137
L M L RLSVQPV+ EY + RM +
Sbjct: 137 ELQKMALFTQRRLSVQPVSASEYAYILRMNE 167
>3eop_A Thymocyte nuclear protein 1; protein of unknown function,
alternative splicing, nucleus, phosphoprotein; 2.30A
{Homo sapiens}
Length = 176
Score = 160 bits (407), Expect = 7e-41
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 31/169 (18%)
Query: 1 MAYWLVKSEPS---------EWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFF 51
M++WL+KSEP ++S + + + + W GVRNYQARN +R M++G++ FF
Sbjct: 1 MSHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFF 60
Query: 52 YHSN-KGREIVGIFEVITCTYPDPTAEQSSC-------------WECVDICAVCSMPCPV 97
YHSN K I G+ +++ YPD T + + W VD+ V M +
Sbjct: 61 YHSNCKEPGIAGLMKIVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFI 120
Query: 98 SLMAIKANPR--------LSSMILIVSSRLSVQPVTTDEYLEVCRMGKL 138
L +K+ + L +M+L RLS+QP+T +E+ V + +L
Sbjct: 121 PLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEFDFVLSLEEL 169
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural
genomics, PSI, protein structure initiative; HET: MPO;
1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB:
2g2x_A
Length = 157
Score = 155 bits (393), Expect = 4e-39
Identities = 56/152 (36%), Positives = 76/152 (50%), Gaps = 17/152 (11%)
Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGRE- 59
MAYWL+KSEP E+S Q G+ W GVRNYQARN +R M GD+ FFYHS+
Sbjct: 1 MAYWLMKSEPDEFSISDLQRLGK--ARWDGVRNYQARNFLRTMAEGDEFFFYHSSCPEPG 58
Query: 60 IVGIFEVITCTYPDPTAEQSSCWE-------------CVDICAVCSMPCPVSLMAIKANP 106
I GI +++ YPDPTA +DI V + L +K
Sbjct: 59 IAGIGKIVKTAYPDPTALDPDSHYHDAKATTEKNPWSALDIGFVDIFKNVLGLGYLKQQS 118
Query: 107 RLSSMILIV-SSRLSVQPVTTDEYLEVCRMGK 137
+L + L+ SRLSV PVT +++ + +
Sbjct: 119 QLEQLPLVQKGSRLSVMPVTAEQWAAILALRL 150
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.3 bits (80), Expect = 0.006
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 12 EWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFF 51
EW K ++D E W ++ Q N R+ DK F+
Sbjct: 111 EWREKAKKDL----EEWNQRQSEQVEKNKINNRIADKAFY 146
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein
structural and functional analyses; 1.70A
{Methanocaldococcus jannaschii}
Length = 147
Score = 32.6 bits (74), Expect = 0.031
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 14/81 (17%)
Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGRE- 59
MAYWL + +E +WK+ ++K G +N + K++VGDK Y + +
Sbjct: 4 MAYWLCIT--NEDNWKVIKEKKIWG-VAER-----YKNTINKVKVGDKLIIYEIQRSGKD 55
Query: 60 -----IVGIFEVITCTYPDPT 75
I G++EV++ Y D +
Sbjct: 56 YKPPYIRGVYEVVSEVYKDSS 76
>2hd9_A UPF0310 protein PH1033; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
HET: CIT; 1.35A {Pyrococcus horikoshii OT3} SCOP:
b.122.1.8 PDB: 1wmm_A* 2zbn_A
Length = 145
Score = 30.7 bits (69), Expect = 0.13
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 16/83 (19%)
Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFY-------- 52
M YW+ + + +W++ + G +N + +++ GDK Y
Sbjct: 1 MTYWICIT--NRENWEVIKRHNVWG-VPKK-----HKNTLSRVKPGDKLVIYVRQEKDKE 52
Query: 53 HSNKGREIVGIFEVITCTYPDPT 75
+ +IVGI+EV + Y D +
Sbjct: 53 GNLLEPKIVGIYEVTSEPYVDFS 75
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5-
triphosphate, wortmannin, H1047R, ATP-binding, disease
mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB:
3hiz_B 2rd0_B
Length = 373
Score = 27.9 bits (61), Expect = 0.88
Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 8/79 (10%)
Query: 30 GVRNYQARNNMRKMRVGDKGFF--------YHSNKGREIVGIFEVITCTYPDPTAEQSSC 81
+ + + K D F ++ N+ + YP +Q
Sbjct: 56 NNKLIKIFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQV 115
Query: 82 WECVDICAVCSMPCPVSLM 100
+ +I AV +
Sbjct: 116 VKEDNIEAVGKKLHEYNTQ 134
>3e8o_A Uncharacterized protein with erredoxin-like fold; NP_295823.1,
protein of unknown function with ferredoxin- like fold;
HET: MSE; 1.40A {Deinococcus radiodurans}
Length = 119
Score = 27.3 bits (60), Expect = 1.4
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 96 PVSLMAIKANPRLSSMILIVSSRLSVQPVTTDEYLEVCR 134
P S++ +PR ++M+ I LS ++
Sbjct: 4 PQSMLTSPQHPRRTTMV-ISHGTLSASAEHAAHLRQLLV 41
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 2.7
Identities = 14/77 (18%), Positives = 20/77 (25%), Gaps = 50/77 (64%)
Query: 35 QARNNMRKMRVGDKGFFYHSNKGREIVGIFEVITCTYPDPTAEQSSCWECVDICAVCSMP 94
QA ++K++ K Y D D S P
Sbjct: 20 QA---LKKLQASLK---------------------LYAD------------D-----SAP 38
Query: 95 CPVSLMAIKANPRLSSM 111
+AIKA +M
Sbjct: 39 A----LAIKA-----TM 46
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural
genomics, PSI, protein structure initiative; 2.00A
{Aquifex aeolicus} SCOP: c.1.10.1
Length = 225
Score = 25.6 bits (56), Expect = 4.5
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 69 CTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIK 103
C P SS + V +C V P ++ ++K
Sbjct: 38 CVNPYHVKLASSIAKKVKVCCVIGFPLGLNKTSVK 72
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 25.7 bits (56), Expect = 4.7
Identities = 5/9 (55%), Positives = 7/9 (77%)
Query: 28 WTGVRNYQA 36
+ GVR Y+A
Sbjct: 305 FIGVRCYEA 313
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-
hairpin-helix, HHH motif, three helix bundle; 2.30A
{Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4
a.60.2.4 a.267.1.1 PDB: 2csd_A
Length = 519
Score = 25.0 bits (54), Expect = 7.1
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 97 VSLMAIKANPRLSSM--ILIVSSRLSVQPVTTDE 128
+ + A+K NP ++ IL+ R+ + PVT DE
Sbjct: 128 IEVRAVKRNPLQPALYRILVRYGRVDLMPVTVDE 161
>1zei_A Insulin, B28Asp-X-MCR; hormone, metabolic role, chemical
activity, insulin mutant, cross-LINK, glucose
metabolism, diabetes; 1.90A {Sus scrofa} SCOP: g.1.1.1
PDB: 6ins_E 1sju_A 2jzq_A
Length = 53
Score = 24.6 bits (54), Expect = 7.4
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 46 GDKGFFYHSNKGREIV 61
G++GFFY + IV
Sbjct: 20 GERGFFYTDKAAKGIV 35
>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle,
archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP:
c.1.10.1
Length = 226
Score = 24.6 bits (53), Expect = 8.0
Identities = 7/35 (20%), Positives = 9/35 (25%)
Query: 69 CTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIK 103
C P V +C V P A +
Sbjct: 35 CVNPIYAPVVRPLLRKVKLCVVADFPFGALPTASR 69
>3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I
protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB:
3m6k_A* 3m7d_A 3m7g_A
Length = 380
Score = 24.7 bits (53), Expect = 8.4
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 97 VSLMAIKANPRLSSM--ILIVSSRLSVQPVTTDE 128
+ + A+K NP ++ IL+ R+ + PVT DE
Sbjct: 128 IEVRAVKRNPLQPALYRILVRYGRVDLMPVTVDE 161
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.133 0.433
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,270,211
Number of extensions: 52846
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 21
Length of query: 143
Length of database: 5,693,230
Length adjustment: 83
Effective length of query: 60
Effective length of database: 3,680,978
Effective search space: 220858680
Effective search space used: 220858680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)