RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781040|ref|YP_003065453.1| hypothetical protein
CLIBASIA_04710 [Candidatus Liberibacter asiaticus str. psy62]
(143 letters)
>d1zcea1 b.122.1.8 (A:2-147) Hypothetical protein Atu2648
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 146
Score = 188 bits (479), Expect = 1e-49
Identities = 95/140 (67%), Positives = 111/140 (79%)
Query: 3 YWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREIVG 62
YWL KSEP +WSW+MQ+ KG GE WTGVRNYQARNNMR M++GDKGFFYHSN+G ++VG
Sbjct: 3 YWLYKSEPFKWSWEMQKAKGETGEEWTGVRNYQARNNMRAMKIGDKGFFYHSNEGLDVVG 62
Query: 63 IFEVITCTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLSVQ 122
I EV ++PD TAE W+CVDI AVC MP PVSL +KANP+L M L+ S RLSVQ
Sbjct: 63 IVEVCALSHPDSTAEGDLKWDCVDIRAVCDMPQPVSLKDVKANPKLEKMSLVTSMRLSVQ 122
Query: 123 PVTTDEYLEVCRMGKLSNPP 142
PVT +EYLEVCRMG L+NPP
Sbjct: 123 PVTEEEYLEVCRMGGLANPP 142
>d2gbsa1 b.122.1.8 (A:2-137) Hypothetical protein RPA0253
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 136
Score = 173 bits (441), Expect = 4e-45
Identities = 81/137 (59%), Positives = 98/137 (71%), Gaps = 1/137 (0%)
Query: 2 AYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREIV 61
AYWLVKSEPS WSW Q KG GEAWTGVRN+ A+ +M MR GD+ F+YHSN+G+EIV
Sbjct: 1 AYWLVKSEPSVWSWDQQVAKGAAGEAWTGVRNHSAKLHMVAMRRGDRAFYYHSNEGKEIV 60
Query: 62 GIFEVITCTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLSV 121
GI E+I YPDPT S + CVDI A + PV+L A+KA PRL+ M L+ SRLSV
Sbjct: 61 GIAEIIREAYPDPTDA-SGKFVCVDIKADKPLKTPVTLAAVKAEPRLADMALMKYSRLSV 119
Query: 122 QPVTTDEYLEVCRMGKL 138
QPVT +E+ VC+MG L
Sbjct: 120 QPVTAEEWKLVCKMGGL 136
>d2ar1a1 b.122.1.8 (A:7-163) Hypothetical protein LmjF36.6870
{Leishmania major [TaxId: 5664]}
Length = 157
Score = 154 bits (390), Expect = 3e-39
Identities = 55/151 (36%), Positives = 72/151 (47%), Gaps = 16/151 (10%)
Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREI 60
+ YWL+KSEP ++S + W GVRNY ARNNMR M VGDK FYHSN
Sbjct: 5 IHYWLLKSEPHKFSIDDLAKQK--TSPWDGVRNYAARNNMRAMSVGDKVLFYHSNTKEPG 62
Query: 61 VGIFEVITCT-YPDPTAE-------------QSSCWECVDICAVCSMPCPVSLMAIKANP 106
V + Y D TA + + W+ VD+ V ++L +K+
Sbjct: 63 VAGLAEVVRLAYDDFTALDKTSEYFDPKATKEKNPWKMVDVKFVARWDTVLTLHELKSRR 122
Query: 107 RLSSMILIVSSRLSVQPVTTDEYLEVCRMGK 137
L M L RLSVQPV+ EY + RM +
Sbjct: 123 ELQKMALFTQRRLSVQPVSASEYAYILRMNE 153
>d2evea1 b.122.1.8 (A:2-149) Hypothetical protein PSPTO5229
{Pseudomonas syringae [TaxId: 317]}
Length = 148
Score = 151 bits (384), Expect = 2e-38
Identities = 56/149 (37%), Positives = 76/149 (51%), Gaps = 17/149 (11%)
Query: 2 AYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSN-KGREI 60
AYWL+KSEP E+S Q G+ W GVRNYQARN +R M GD+ FFYHS+ I
Sbjct: 1 AYWLMKSEPDEFSISDLQRLGK--ARWDGVRNYQARNFLRTMAEGDEFFFYHSSCPEPGI 58
Query: 61 VGIFEVITCTYPDPTAEQSSC-------------WECVDICAVCSMPCPVSLMAIKANPR 107
GI +++ YPDPTA W +DI V + L +K +
Sbjct: 59 AGIGKIVKTAYPDPTALDPDSHYHDAKATTEKNPWSALDIGFVDIFKNVLGLGYLKQQSQ 118
Query: 108 LSSMILIV-SSRLSVQPVTTDEYLEVCRM 135
L + L+ SRLSV PVT +++ + +
Sbjct: 119 LEQLPLVQKGSRLSVMPVTAEQWAAILAL 147
>d2hd9a1 b.122.1.8 (A:1-145) Hypothetical protein PH1033
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 145
Score = 32.2 bits (73), Expect = 0.019
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 16/83 (19%)
Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFY-------- 52
M YW+ + + +W++ + G + +N + +++ GDK Y
Sbjct: 1 MTYWICIT--NRENWEVIKRHNVWG------VPKKHKNTLSRVKPGDKLVIYVRQEKDKE 52
Query: 53 HSNKGREIVGIFEVITCTYPDPT 75
+ +IVGI+EV + Y D +
Sbjct: 53 GNLLEPKIVGIYEVTSEPYVDFS 75
>d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease,
catalytic domain {Bacillus pasteurii [TaxId: 1474]}
Length = 390
Score = 28.5 bits (64), Expect = 0.21
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 18 QQDKGRVGEAWTGVRNYQARNNMRKMRVGDKG 49
GR GE R +Q + M+K R
Sbjct: 233 ALAMGRAGEMVL--RTWQTADKMKKQRGPLAE 262
>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease,
catalytic domain {Helicobacter pylori [TaxId: 210]}
Length = 389
Score = 26.6 bits (59), Expect = 0.95
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 18 QQDKGRVGEAWTGVRNYQARNNMRKMR 44
Q GRVGE T R +Q + +K
Sbjct: 232 SQAMGRVGEVIT--RTWQTADKNKKEF 256
>d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 226
Score = 25.4 bits (55), Expect = 1.9
Identities = 7/35 (20%), Positives = 9/35 (25%)
Query: 69 CTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIK 103
C P V +C V P A +
Sbjct: 35 CVNPIYAPVVRPLLRKVKLCVVADFPFGALPTASR 69
>d2csba5 a.267.1.1 (A:3-293) Topoisomerase V, catalytic domain
{Methanopyrus kandleri [TaxId: 2320]}
Length = 291
Score = 24.3 bits (52), Expect = 3.9
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 97 VSLMAIKANPRLSSM--ILIVSSRLSVQPVTTDE 128
+ + A+K NP ++ IL+ R+ + PVT DE
Sbjct: 126 IEVRAVKRNPLQPALYRILVRYGRVDLMPVTVDE 159
>d1oe1a2 b.6.1.3 (A:160-336) Nitrite reductase, NIR {Alcaligenes
xylosoxidans [TaxId: 85698]}
Length = 177
Score = 24.4 bits (53), Expect = 3.9
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 13/52 (25%)
Query: 21 KGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGRE-----IVGIFEVI 67
G+VG A TG N +VG+ HS R+ I G + +
Sbjct: 56 NGKVG-ALTG-------ANALTAKVGETVLLIHSQANRDTRPHLIGGHGDWV 99
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP
module {Pseudomonas putida [TaxId: 303]}
Length = 407
Score = 23.7 bits (50), Expect = 7.1
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 8/60 (13%)
Query: 40 MRKMRVGDKGFFYHSNKGREIVGI--------FEVITCTYPDPTAEQSSCWECVDICAVC 91
M + K FY + G E +G ++ TY + + V++
Sbjct: 93 MVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQL 152
>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex
aeolicus [TaxId: 63363]}
Length = 225
Score = 23.4 bits (50), Expect = 7.3
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 69 CTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIK 103
C P SS + V +C V P ++ ++K
Sbjct: 38 CVNPYHVKLASSIAKKVKVCCVIGFPLGLNKTSVK 72
>d1vlfn2 d.58.1.5 (N:1-195) Transhydroxylase beta subunit, BthL,
N-terminal domain {Pelobacter acidigallici [TaxId:
35816]}
Length = 195
Score = 23.4 bits (49), Expect = 7.6
Identities = 4/29 (13%), Positives = 4/29 (13%)
Query: 68 TCTYPDPTAEQSSCWECVDICAVCSMPCP 96
Y E CP
Sbjct: 82 GAVYQREDGIVLIDPEKAKGKKELLDTCP 110
>g1mso.1 g.1.1.1 (B:,A:) Insulin {Human (Homo sapiens) [TaxId:
9606]}
Length = 51
Score = 23.1 bits (50), Expect = 9.1
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 46 GDKGFFYHSNKG 57
G++GFFY G
Sbjct: 20 GERGFFYTPKTG 31
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.133 0.433
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 554,859
Number of extensions: 23560
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 22
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.4 bits)