BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781040|ref|YP_003065453.1| hypothetical protein
CLIBASIA_04710 [Candidatus Liberibacter asiaticus str. psy62]
(143 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781040|ref|YP_003065453.1| hypothetical protein CLIBASIA_04710 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 143
Score = 300 bits (767), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREI 60
MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREI
Sbjct: 1 MAYWLVKSEPSEWSWKMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKGFFYHSNKGREI 60
Query: 61 VGIFEVITCTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLS 120
VGIFEVITCTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLS
Sbjct: 61 VGIFEVITCTYPDPTAEQSSCWECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLS 120
Query: 121 VQPVTTDEYLEVCRMGKLSNPPL 143
VQPVTTDEYLEVCRMGKLSNPPL
Sbjct: 121 VQPVTTDEYLEVCRMGKLSNPPL 143
>gi|254780416|ref|YP_003064829.1| putative ferredoxin protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 113
Score = 24.6 bits (52), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 83 ECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLSVQ 122
EC+D C VC CPV + P L + L ++S + Q
Sbjct: 39 ECID-CGVCEPECPVDAIKPDTEPGL-ELWLKINSEYATQ 76
>gi|254780125|ref|YP_003064538.1| prophage antirepressor [Candidatus Liberibacter asiaticus str.
psy62]
Length = 262
Score = 23.9 bits (50), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 127 DEYLEVCRMGKLSNPP 142
DEYL + ++G+ NPP
Sbjct: 174 DEYLTITQIGERLNPP 189
>gi|254780801|ref|YP_003065214.1| hypothetical protein CLIBASIA_03460 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 222
Score = 23.9 bits (50), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 53 HSNKGREIVGIFEVITCTYPDPTA 76
SNK EIV +F+VI + TA
Sbjct: 83 QSNKVSEIVSLFDVIETVSREKTA 106
>gi|254780999|ref|YP_003065412.1| NAD synthetase [Candidatus Liberibacter asiaticus str. psy62]
Length = 562
Score = 23.5 bits (49), Expect = 1.6, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 1 MAYWLVKSEPSEWSW-----------KMQQDKGRVGEAWTGVRNYQARNNMRKMRVGDKG 49
M W + S+W++ +Q+++ +R+Y +NN K+ +G G
Sbjct: 242 MTEWHYDQQLSQWNYMSDDSASTMYIPLQEEEADYNACVLSLRDYVQKNNFHKVIIGLSG 301
>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1162
Score = 22.7 bits (47), Expect = 2.7, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 100 MAIKANPRLSSMILIVSSRLSVQPVTTDEYLEVCRM 135
+ I NP S ++ RL + +T ++ LE+ R+
Sbjct: 656 IMINCNPETVSTDYDIADRLYFESLTEEDILEILRV 691
>gi|254780861|ref|YP_003065274.1| NADH dehydrogenase subunit I [Candidatus Liberibacter asiaticus
str. psy62]
Length = 163
Score = 22.3 bits (46), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 88 CAVCSMPCPVSLMAIKANPR 107
C +C CP + I++ PR
Sbjct: 66 CKLCEAICPAQAITIESGPR 85
>gi|254780618|ref|YP_003065031.1| F0F1 ATP synthase subunit delta [Candidatus Liberibacter asiaticus
str. psy62]
Length = 186
Score = 21.6 bits (44), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 112 ILIVSSRLSVQPVTTDEYLEVC 133
IL+ + RLSV P + VC
Sbjct: 86 ILVANGRLSVLPAIIKSFRAVC 107
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.133 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,400
Number of Sequences: 1233
Number of extensions: 3331
Number of successful extensions: 12
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 9
length of query: 143
length of database: 328,796
effective HSP length: 66
effective length of query: 77
effective length of database: 247,418
effective search space: 19051186
effective search space used: 19051186
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 34 (17.7 bits)