HHsearch alignment for GI: 254781041 and conserved domain: TIGR02968
>TIGR02968 succ_dehyd_anc succinate dehydrogenase, hydrophobic membrane anchor protein; InterPro: IPR014312 In Escherichia coli and many other bacteria, two small, hydrophobic, mutually homologous subunits of succinate dehydrogenase (a TCA cycle enzyme) are SdhC and SdhD. This entry is the SdhD, the hydrophobic membrane anchor protein. SdhC is apocytochrome b558, which also plays a role in anchoring the complex..
Probab=98.23 E-value=4.4e-05 Score=47.10 Aligned_cols=79 Identities=20% Similarity=0.207 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHH
Q ss_conf 99999999999999999999999985163035546753068316999999999999999998999998521233589999
Q gi|254781041|r 26 SIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIAT 105 (129)
Q Consensus 26 SI~HRitGi~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~yH~~nGiRHL~wD~g~g~~~~~~~ 105 (129)
T Consensus 8 w~~QR~TAv~~~~y~~~~~~--~~~~~~~~~Y~~w~~~f~~~~~~~~~~l~l~~~~~HawiGm~~v~~DYv~~~~lRl~l 85 (105)
T TIGR02968 8 WLLQRVTAVVLALYTIFLIG--FLLALPGATYEAWRALFAHPWMKIFTLLALLALLYHAWIGMRVVLEDYVKPEGLRLVL 85 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999999999999999--9995589998999999866499999999999999973872676544223637999999
Q ss_pred H
Q ss_conf 9
Q gi|254781041|r 106 Q 106 (129)
Q Consensus 106 ~ 106 (129)
T Consensus 86 ~ 86 (105)
T TIGR02968 86 Q 86 (105)
T ss_pred H
T ss_conf 9