HHsearch alignment for GI: 254781041 and conserved domain: TIGR02968

>TIGR02968 succ_dehyd_anc succinate dehydrogenase, hydrophobic membrane anchor protein; InterPro: IPR014312 In Escherichia coli and many other bacteria, two small, hydrophobic, mutually homologous subunits of succinate dehydrogenase (a TCA cycle enzyme) are SdhC and SdhD. This entry is the SdhD, the hydrophobic membrane anchor protein. SdhC is apocytochrome b558, which also plays a role in anchoring the complex..
Probab=98.23  E-value=4.4e-05  Score=47.10  Aligned_cols=79  Identities=20%  Similarity=0.207  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHH
Q ss_conf             99999999999999999999999985163035546753068316999999999999999998999998521233589999
Q gi|254781041|r   26 SIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIAT  105 (129)
Q Consensus        26 SI~HRitGi~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~yH~~nGiRHL~wD~g~g~~~~~~~  105 (129)
T Consensus         8 w~~QR~TAv~~~~y~~~~~~--~~~~~~~~~Y~~w~~~f~~~~~~~~~~l~l~~~~~HawiGm~~v~~DYv~~~~lRl~l   85 (105)
T TIGR02968         8 WLLQRVTAVVLALYTIFLIG--FLLALPGATYEAWRALFAHPWMKIFTLLALLALLYHAWIGMRVVLEDYVKPEGLRLVL   85 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             99999999999999999999--9995589998999999866499999999999999973872676544223637999999


Q ss_pred             H
Q ss_conf             9
Q gi|254781041|r  106 Q  106 (129)
Q Consensus       106 ~  106 (129)
T Consensus        86 ~   86 (105)
T TIGR02968        86 Q   86 (105)
T ss_pred             H
T ss_conf             9