HHsearch alignment for GI: 254781041 and conserved domain: TIGR02970

>TIGR02970 succ_dehyd_cytB succinate dehydrogenase, cytochrome b556 subunit; InterPro: IPR014314 In E. coli and many other bacteria, two small, hydrophobic, mutually homologous subunits of succinate dehydrogenase (a TCA cycle enzyme) are SdhC and SdhD. This entry is the SdhC, the cytochrome b subunit, called b556 in bacteria and b560 in mitochondria. SdhD (see IPR014312 from INTERPRO) is called the hydrophobic membrane anchor subunit, although both SdhC and SdhD participate in anchoring the complex. In some bacteria, this cytochrome b subunit is replaced my a member of the cytochrome b558 family (see IPR011138 from INTERPRO)..
Probab=100.00  E-value=0  Score=273.57  Aligned_cols=119  Identities=33%  Similarity=0.627  Sum_probs=117.2

Q ss_pred             CCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHH-HCCCHHHHHHHHHHHHHHH
Q ss_conf             4989997735102666599999999999999999999999999985163035--546753-0683169999999999999
Q gi|254781041|r    6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL--SSLRCY-MDGSVFEVCLFLYTWAVIH   82 (129)
Q Consensus         6 ~~RPlsphL~iyk~~~t~~~SI~HRitGi~l~~~~~~~~~~l~~~~~~~~~~--~~~~~~-~~~~~~k~~~~~~~~~~~y   82 (129)
T Consensus         1 ~~RP~sphL~~yr~p~~a~~SIlHRitG~~Lf~~l~~~~w~L~~~l~s~~~f~~~~~~~~l~~~~~~kl~l~~~~~a~~y   80 (123)
T TIGR02970         1 KQRPLSPHLQIYRFPITAILSILHRITGVLLFFGLPFLLWLLSLSLSSPESFLNATVQALLLSSPLGKLILFGLLWALLY   80 (123)
T ss_pred             CCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99998998642201523677779999999999999999999999850788999999999897317999999999999999


Q ss_pred             HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999989999985212335899999999999999999999999
Q gi|254781041|r   83 HMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI  124 (129)
Q Consensus        83 H~~nGiRHL~wD~g~g~~~~~~~~s~~~vl~~sil~~~~~~~  124 (129)
T Consensus        81 H~~~GIRHL~~D~G~G~~~~~~~~~a~~v~~~~~vl~~~~~~  122 (123)
T TIGR02970        81 HLLAGIRHLLWDLGYGLELKSARISAWVVLVLSLVLTVLAGI  122 (123)
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999889999987288865567888999999999999999984