HHSEARCH alignment of GI: 254781041 and SCOP domain: d1kf6d_

Alignment
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=92.36  E-value=0.27  Score=23.99  Aligned_cols=104  Identities=11%  Similarity=0.051  Sum_probs=66.3

Q ss_pred             CCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHCCCHHHHHHHHHCCCHHHHHHH
Q ss_conf             96200498999773510266659999999999999999999999999998------516303554675306831699999
Q gi|254781041|r    1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI------ANGEHTLSSLRCYMDGSVFEVCLF   74 (129)
Q Consensus         1 m~~m~~~RPlsphL~iyk~~~t~~~SI~HRitGi~l~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~k~~~~   74 (129)
                      |.|.+.||---       |    +.+-+--.-|..-+...|..+......      ..++.+|+.+..+..++++|.+..
T Consensus         1 m~n~~pKRS~E-------P----i~WgLFgAGGm~~A~~~Pvlill~giLlPlG~~~~~a~~y~~i~aFa~s~iG~l~ll   69 (119)
T d1kf6d_           1 MINPNPKRSDE-------P----VFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLF   69 (119)
T ss_dssp             CCCSSCCCCSH-------H----HHHHHHHHHHHHHHHTHHHHHHHHHTTGGGTCSSTTTTSHHHHHHHHTSHHHHHHHH
T ss_pred             CCCCCCCCCCC-------C----CHHEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99899887789-------8----311234477205899988999999999961267866568999999984479999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999998999998521233589999999999999999999
Q gi|254781041|r   75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL  120 (129)
Q Consensus        75 ~~~~~~~yH~~nGiRHL~wD~g~g~~~~~~~~s~~~vl~~sil~~~  120 (129)
                      ....--..|-+--++|-+=|++.-...     ..++--+++.+.|+
T Consensus        70 ~~i~lplWh~~HRihHglHDlkih~p~-----g~~~fYg~A~l~sv  110 (119)
T d1kf6d_          70 LMIVLPLWCGLHRMHHAMHDLKIHVPA-----GKWVFYGLAAILTV  110 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCTT-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHH
T ss_conf             999999999999999988663000363-----04788999999999


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Heme-binding four-helical bundle
superfamily: Fumarate reductase respiratory complex transmembrane subunits
family: Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
domain: Fumarate reductase subunit FrdD
species: Escherichia coli [TaxId: 562]