BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781041|ref|YP_003065454.1| succinate dehydrogenase
protein, cytochrome b subunit [Candidatus Liberibacter asiaticus str.
psy62]
(129 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254781041|ref|YP_003065454.1| succinate dehydrogenase protein, cytochrome b subunit [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040718|gb|ACT57514.1| succinate dehydrogenase protein, cytochrome b subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 129
Score = 262 bits (670), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL
Sbjct: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL
Sbjct: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
Query: 121 IVWIIKDIV 129
IVWIIKDIV
Sbjct: 121 IVWIIKDIV 129
>gi|315122380|ref|YP_004062869.1| succinate dehydrogenase protein, cytochrome b subunit [Candidatus
Liberibacter solanacearum CLso-ZC1]
gi|313495782|gb|ADR52381.1| succinate dehydrogenase protein, cytochrome b subunit [Candidatus
Liberibacter solanacearum CLso-ZC1]
Length = 129
Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 83/128 (64%), Positives = 101/128 (78%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
MS +K+NRPLSPHLQIY+LIPTM +SIVHRITGS VY GTP +V WFF +A G++TL
Sbjct: 1 MSDLKSNRPLSPHLQIYKLIPTMLISIVHRITGSAVYFGTPALVLWFFAVAEGKYTLGLW 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
R Y D F + LFLYTW+ IHHMLGGIRYL+WD S L+KK++ MAKINIIASI V
Sbjct: 61 RSYTDCGFFSIFLFLYTWSAIHHMLGGIRYLMWDSSFLLEKKVSITMAKINIIASIFIVS 120
Query: 121 IVWIIKDI 128
++WI+K+I
Sbjct: 121 VIWIVKNI 128
>gi|90421134|ref|ZP_01229036.1| succinate dehydrogenase, cytochrome b subunit [Aurantimonas
manganoxydans SI85-9A1]
gi|90334626|gb|EAS48406.1| succinate dehydrogenase, cytochrome b subunit [Aurantimonas
manganoxydans SI85-9A1]
Length = 130
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 83/124 (66%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
MS +K RPLSPHL IYR PTM +SI+HRITGS +Y+GT + V+W A+G S
Sbjct: 1 MSDLKTARPLSPHLSIYRFRPTMAMSILHRITGSALYVGTLLFVWWLIAAASGPEAFSYA 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + + LF YTWA++HHM GGIR+LIWD + L K+ +T++A+ ++AS+ L
Sbjct: 61 SAFFGSIIGRIILFGYTWALLHHMFGGIRHLIWDTGIGLSKETSTKLAQATLVASLALTL 120
Query: 121 IVWI 124
I+W+
Sbjct: 121 ILWV 124
>gi|86359478|ref|YP_471370.1| succinate dehydrogenase cytochrome B-556 subunit protein [Rhizobium
etli CFN 42]
gi|190893746|ref|YP_001980288.1| succinate dehydrogenase, cytochrome b subunit [Rhizobium etli CIAT
652]
gi|218515347|ref|ZP_03512187.1| succinate dehydrogenase protein, cytochrome b subunit [Rhizobium
etli 8C-3]
gi|86283580|gb|ABC92643.1| succinate dehydrogenase cytochrome B-556 subunit protein [Rhizobium
etli CFN 42]
gi|190699025|gb|ACE93110.1| succinate dehydrogenase protein, cytochrome b subunit [Rhizobium
etli CIAT 652]
Length = 131
Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 91/129 (70%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ NNRPLSPHLQ+Y+LIPTM +SIVHRITG +Y+GT +V +W A+G+ +
Sbjct: 1 MANVTNNRPLSPHLQVYKLIPTMVMSIVHRITGGALYVGTLLVAWWLIAAASGQASYDWA 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + ++ L YTWA++HHMLGG R+L+WD+ +K+++T++A NII S+ +
Sbjct: 61 NWVLGSLLGKLVLLGYTWALLHHMLGGFRHLMWDLGYGFEKEVSTKLAIANIIGSLCLTV 120
Query: 121 IVWIIKDIV 129
+VW+I ++
Sbjct: 121 LVWVIGFLI 129
>gi|327188889|gb|EGE56081.1| succinate dehydrogenase cytochrome B-556 subunit protein [Rhizobium
etli CNPAF512]
Length = 146
Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 89/125 (71%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ NNRPLSPHLQ+Y+LIPTM +SIVHRITG +Y+GT +V +W A+G+ +
Sbjct: 16 MANVTNNRPLSPHLQVYKLIPTMVMSIVHRITGGALYVGTLLVAWWLIAAASGQASYDWA 75
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + ++ L YTWA++HHMLGG R+L+WD+ +K+++T++A NII S+ +
Sbjct: 76 NWVLGSLLGKLVLLGYTWALLHHMLGGFRHLMWDLGYGFEKEVSTKLAIANIIGSLCLTV 135
Query: 121 IVWII 125
+VW++
Sbjct: 136 LVWVV 140
>gi|222087469|ref|YP_002546006.1| succinate dehydrogenase, cytochrome b556 subunit [Agrobacterium
radiobacter K84]
gi|221724917|gb|ACM28073.1| succinate dehydrogenase, cytochrome b556 subunit [Agrobacterium
radiobacter K84]
Length = 133
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 82/125 (65%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ NRPLSPHLQIY+ IPTM +SIVHRITG +Y GT +V +W A G+ +
Sbjct: 2 MANVTQNRPLSPHLQIYKPIPTMIMSIVHRITGGALYFGTVLVAWWLIAAATGQGYFELV 61
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
M + + LF YTWA++HHMLGG+R+ +WD+ K+ +T++AK ++ S+
Sbjct: 62 NWIMGTIIGRLVLFGYTWALLHHMLGGLRHFMWDLGYGFGKEFSTKLAKATLVGSLCLTA 121
Query: 121 IVWII 125
+VWII
Sbjct: 122 LVWII 126
>gi|227823652|ref|YP_002827625.1| putative succinate dehydrogenase membrane anchor subunit
[Sinorhizobium fredii NGR234]
gi|227342654|gb|ACP26872.1| putative succinate dehydrogenase membrane anchor subunit
[Sinorhizobium fredii NGR234]
Length = 130
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 84/129 (65%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ +RPLSPHLQIY+ IPTM +SIVHRITG +Y GT +V +W A+G +
Sbjct: 1 MTNVTRSRPLSPHLQIYKPIPTMVMSIVHRITGGALYFGTILVAWWLIAAASGAAYYDWV 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ ++ LF YTWA++HHMLGGIR+ IWD+ +K AT+MAK + S+ L
Sbjct: 61 NWLFGTLIGKLVLFGYTWALVHHMLGGIRHFIWDLGYGYEKHFATKMAKGTLAGSVALTL 120
Query: 121 IVWIIKDIV 129
++WI+ +V
Sbjct: 121 LLWIVGSLV 129
>gi|325294014|ref|YP_004279878.1| succinate dehydrogenase cytochrome B-556 subunit [Agrobacterium sp.
H13-3]
gi|325061867|gb|ADY65558.1| succinate dehydrogenase cytochrome B-556 subunit [Agrobacterium sp.
H13-3]
Length = 130
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 85/129 (65%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ NNRPLSPHLQIY+ IPTM SIVHRITG+ +Y GT +V +W +A+G +
Sbjct: 1 MANVTNNRPLSPHLQIYKPIPTMVASIVHRITGAALYFGTLLVAWWLIALASGPAYYDWV 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
M + ++ L YTWA++HHMLGG+R+ +WD+ +K T++AK +ASI
Sbjct: 61 SWAMGTIIGKLILIGYTWALVHHMLGGLRHFMWDLGHGFEKNFNTKLAKATFVASICLTA 120
Query: 121 IVWIIKDIV 129
++W+I IV
Sbjct: 121 LIWVIALIV 129
>gi|159185307|ref|NP_355582.2| succinate dehydrogenase cytochrome B-556 subunit [Agrobacterium
tumefaciens str. C58]
gi|159140565|gb|AAK88367.2| succinate dehydrogenase cytochrome B-556 subunit [Agrobacterium
tumefaciens str. C58]
Length = 130
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 84/129 (65%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ NNRPLSPHLQIY+ IPTM SIVHRITG +Y GT +V +W +A+G +
Sbjct: 1 MANVTNNRPLSPHLQIYKPIPTMVASIVHRITGGALYFGTLLVAWWLIALASGPAYYDWV 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
M + + L YTWA++HHMLGG+R+ +WD+ DK T++AK + +ASI
Sbjct: 61 NWAMGTIIGRLILIGYTWALVHHMLGGLRHFMWDLGHGFDKHFTTKLAKASWVASICLTA 120
Query: 121 IVWIIKDIV 129
++W+I IV
Sbjct: 121 LIWVIVLIV 129
>gi|209551264|ref|YP_002283181.1| succinate dehydrogenase, cytochrome b556 subunit [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|241206664|ref|YP_002977760.1| succinate dehydrogenase, cytochrome b556 subunit [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|209537020|gb|ACI56955.1| succinate dehydrogenase, cytochrome b556 subunit [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|240860554|gb|ACS58221.1| succinate dehydrogenase, cytochrome b556 subunit [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 131
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 87/129 (67%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ NNRPLSPHLQIY+ IPTM +SIVHRITG +Y+GT +V +W A+G+ +
Sbjct: 1 MANVTNNRPLSPHLQIYKPIPTMVMSIVHRITGGALYVGTLLVAWWLIAAASGQGSYDWA 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + ++ L YTWA++HHMLGG R+ +WD+ K+ +T++A NII S+ +
Sbjct: 61 NWVLGSLLGKLVLLGYTWALLHHMLGGFRHFMWDLGYGFGKEFSTKLAIANIIGSLCLTV 120
Query: 121 IVWIIKDIV 129
+VW+I ++
Sbjct: 121 LVWVIGFLI 129
>gi|116254178|ref|YP_770016.1| succinate dehydrogenase cytochrome b556 subunit [Rhizobium
leguminosarum bv. viciae 3841]
gi|115258826|emb|CAK09932.1| putative succinate dehydrogenase cytochrome b556 subunit [Rhizobium
leguminosarum bv. viciae 3841]
Length = 131
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 87/129 (67%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ NNRPLSPHLQIY+ IPTM +SIVHRITG +Y+GT +V +W A+G+ +
Sbjct: 1 MANVTNNRPLSPHLQIYKPIPTMIMSIVHRITGGALYVGTILVAWWLIAAASGQGSYDWA 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + ++ L YTWA++HHMLGG R+ +WD+ K+ +T++A NII S+ +
Sbjct: 61 NWVLGSLLGKLVLLGYTWALLHHMLGGFRHFMWDLGYGFGKEFSTKLAIANIIGSLCLTV 120
Query: 121 IVWIIKDIV 129
+VW+I ++
Sbjct: 121 LVWVIGFLI 129
>gi|15966825|ref|NP_387178.1| succinate dehydrogenase cytochrome B-556 subunit transmembrane
protein [Sinorhizobium meliloti 1021]
gi|307301653|ref|ZP_07581412.1| succinate dehydrogenase, cytochrome b556 subunit [Sinorhizobium
meliloti BL225C]
gi|307316323|ref|ZP_07595767.1| succinate dehydrogenase, cytochrome b556 subunit [Sinorhizobium
meliloti AK83]
gi|15076097|emb|CAC47651.1| Probable succinate dehydrogenase cytochrome B-556 subunit
transmembrane protein [Sinorhizobium meliloti 1021]
gi|306898163|gb|EFN28905.1| succinate dehydrogenase, cytochrome b556 subunit [Sinorhizobium
meliloti AK83]
gi|306903351|gb|EFN33940.1| succinate dehydrogenase, cytochrome b556 subunit [Sinorhizobium
meliloti BL225C]
Length = 130
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 83/125 (66%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ +RPLSPHLQIY+ IPTM +SI+HRITG +Y GT +V +W A+G +
Sbjct: 1 MTNVTRSRPLSPHLQIYKPIPTMIMSIMHRITGGALYFGTVLVAWWLIAAASGTAYYDWV 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ +V LF YTWA++HH+LGGIR+L WD+ +K AT+MAK I+AS L
Sbjct: 61 NWLFGTFIGKVVLFGYTWALVHHLLGGIRHLAWDLGYGYEKHFATRMAKAMIVASATLTL 120
Query: 121 IVWII 125
++W++
Sbjct: 121 VIWVV 125
>gi|218682066|ref|ZP_03529667.1| succinate dehydrogenase, cytochrome b556 subunit [Rhizobium etli
CIAT 894]
Length = 131
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 86/129 (66%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ NNRPLSPHLQIY+ IPTM +SIVHRITG +Y+GT +V +W A+G+ +
Sbjct: 1 MANVTNNRPLSPHLQIYKPIPTMVMSIVHRITGGALYVGTLLVAWWLIAAASGQGSYDWA 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + + L YTWA++HHMLGG R+ +WD+ K+ +T++A NII S+ +
Sbjct: 61 NWVLGSLLGKFVLLGYTWALLHHMLGGFRHFMWDLGYGFGKEFSTKLAIANIIGSLCLTV 120
Query: 121 IVWIIKDIV 129
+VW+I ++
Sbjct: 121 LVWVIGFLI 129
>gi|150398156|ref|YP_001328623.1| succinate dehydrogenase cytochrome b556 subunit [Sinorhizobium
medicae WSM419]
gi|150029671|gb|ABR61788.1| Succinate dehydrogenase cytochrome b556 subunit [Sinorhizobium
medicae WSM419]
Length = 130
Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 84/125 (67%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ +RPLSPHLQIY+ IPTM +SI+HRITG +Y GT +V +W A+G +
Sbjct: 1 MTNVTRSRPLSPHLQIYKPIPTMIMSIMHRITGGALYFGTVLVAWWLIAAASGTAYYDWV 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + +V LF YTWA++HH+LGGIR+L WD+ +K AT++AK I+AS L
Sbjct: 61 NWFFGTLIGKVVLFGYTWALMHHLLGGIRHLGWDLGYGYEKHFATRVAKAMIVASAALTL 120
Query: 121 IVWII 125
++WI+
Sbjct: 121 VIWIV 125
>gi|114707253|ref|ZP_01440151.1| succinate dehydrogenase cytochrome B-556 subunit protein
[Fulvimarina pelagi HTCC2506]
gi|114537449|gb|EAU40575.1| succinate dehydrogenase cytochrome B-556 subunit protein
[Fulvimarina pelagi HTCC2506]
Length = 129
Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 79/124 (63%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
MS +K+NRPLSPHL IY+ PTM +SIVHRITG +Y GT ++V+W A+GE +
Sbjct: 1 MSDVKSNRPLSPHLSIYKFRPTMAMSIVHRITGGALYFGTILIVWWLIAAASGEAAFETA 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + + L Y+WA+ HH LGGIR+ IWD L K+ +T+ A++ ++ S+
Sbjct: 61 SWFFGSFIGILILMGYSWALFHHALGGIRHFIWDTGHGLSKETSTKFAQMTLVGSLGLTA 120
Query: 121 IVWI 124
I+W+
Sbjct: 121 ILWL 124
>gi|218507957|ref|ZP_03505835.1| succinate dehydrogenase protein, cytochrome b subunit [Rhizobium
etli Brasil 5]
Length = 111
Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 79/111 (71%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ NNRPLSPHLQ+Y+LIPTM +SIVHRITG +Y+GT +V +W A+G+ +
Sbjct: 1 MANVTNNRPLSPHLQVYKLIPTMVMSIVHRITGGALYVGTLLVAWWLIAAASGQASYDWA 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN 111
+ + ++ L YTWA++HHMLGG R+L+WD+ +K+++T++A N
Sbjct: 61 NWVLGSLLGKLVLLGYTWALLHHMLGGFRHLMWDLGYGFEKEVSTKLAIAN 111
>gi|254470646|ref|ZP_05084049.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudovibrio sp.
JE062]
gi|211959788|gb|EEA94985.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudovibrio sp.
JE062]
Length = 132
Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 81/128 (63%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+ +K NRPLSPHLQIY+ I TM +SI+HRITG+ +Y GT ++ FW C A G +
Sbjct: 4 ADLKANRPLSPHLQIYKPIVTMVMSILHRITGAALYFGTILMAFWLVCAAAGPESYQFAM 63
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ ++ LF +TWA++HHMLGG+R+ +WD+ D A MA+ II S+ +I
Sbjct: 64 DVFGSFLGQLVLFGFTWALVHHMLGGLRHFVWDMGHGFDLSAANWMARATIIGSVSLTVI 123
Query: 122 VWIIKDIV 129
+WII IV
Sbjct: 124 LWIIGFIV 131
>gi|222150048|ref|YP_002551005.1| succinate dehydrogenase cytochrome B-556 subunit [Agrobacterium
vitis S4]
gi|221737030|gb|ACM37993.1| succinate dehydrogenase cytochrome B-556 subunit [Agrobacterium
vitis S4]
Length = 130
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 76/115 (66%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ RPLSPHLQIY+L+PTM +SIVHRITG +Y GT +V +W + G +
Sbjct: 1 MANVTKQRPLSPHLQIYKLVPTMLMSIVHRITGGALYFGTALVAWWLIAASTGADYYDWV 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+M + ++ LF ++WA+IHHMLGG+R+ WD+ L+K T++AK +AS
Sbjct: 61 SWFMGTFIGKIILFGFSWALIHHMLGGMRHFAWDLGYGLEKHFNTKLAKATAVAS 115
>gi|163761421|ref|ZP_02168495.1| putative succinate dehydrogenase cytochrome b556 subunit [Hoeflea
phototrophica DFL-43]
gi|162281416|gb|EDQ31713.1| putative succinate dehydrogenase cytochrome b556 subunit [Hoeflea
phototrophica DFL-43]
Length = 163
Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 78/124 (62%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ NRPLSPHL IY+ IPTM +SI+HR+TG +Y GT +V +W A+G +
Sbjct: 33 MTNVTQNRPLSPHLSIYKQIPTMVMSILHRLTGMALYAGTILVAWWLIAAASGPEYFDWV 92
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + LF YTWA++HH+LGGIR+ IWD D + +T+MA I S++ +
Sbjct: 93 NGIFGSLLGRLVLFGYTWALVHHLLGGIRHFIWDTGHGFDPQTSTKMAWATITGSVILTV 152
Query: 121 IVWI 124
++WI
Sbjct: 153 LIWI 156
>gi|304394275|ref|ZP_07376198.1| succinate dehydrogenase, cytochrome b556 subunit [Ahrensia sp.
R2A130]
gi|303293715|gb|EFL88092.1| succinate dehydrogenase, cytochrome b556 subunit [Ahrensia sp.
R2A130]
Length = 138
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 76/121 (62%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ + RPLSPHL+IY+ IPTM +SI+HR+TG+ +Y GT +V +W A+G +
Sbjct: 9 TTRKPRPLSPHLEIYKPIPTMVMSILHRVTGAALYFGTILVAWWLLAAASGPEAFETASN 68
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + LF YT A+IHHMLGG+++L+ D LDK T+MAK + SI+ +++
Sbjct: 69 FFGSWFGRLVLFGYTLALIHHMLGGMKHLVQDTGRGLDKDFTTKMAKAQPVLSIIITVLI 128
Query: 123 W 123
W
Sbjct: 129 W 129
>gi|13473609|ref|NP_105177.1| succinate dehydrogenase membrane anchor subunit [Mesorhizobium loti
MAFF303099]
gi|14024359|dbj|BAB50963.1| succinate dehydrogenase membrane anchor subunit [Mesorhizobium loti
MAFF303099]
Length = 139
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 75/120 (62%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RPLSPHL IYR TM +SI+HRITG +Y GT +V W A+ + T +
Sbjct: 12 RRERPLSPHLTIYRPPITMTMSIIHRITGGALYFGTLLVAIWLMAAASSQATFDWVNWAF 71
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ + LF YTWA++HHMLGG+R+L+WD L+K A+++A ++ S+L L++WI
Sbjct: 72 GTWLGRLILFGYTWALMHHMLGGVRHLVWDTGAGLEKHTASKIAWATLVGSVLLTLLIWI 131
>gi|319780753|ref|YP_004140229.1| succinate dehydrogenase cytochrome b556 subunit [Mesorhizobium
ciceri biovar biserrulae WSM1271]
gi|317166641|gb|ADV10179.1| succinate dehydrogenase, cytochrome b556 subunit [Mesorhizobium
ciceri biovar biserrulae WSM1271]
Length = 139
Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 74/125 (59%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RP+SPHL +YR TM +SI+HRITG +Y GT +V W A+ + T
Sbjct: 12 RRERPISPHLTVYRPPITMTMSIIHRITGGALYFGTLLVALWLMAAASSQATFDWANWAF 71
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ + LF YTWA++HHMLGG+R+LIWD L+K A+++A + SIL L++WI
Sbjct: 72 GTWLGRIILFGYTWALMHHMLGGVRHLIWDTGAGLEKHTASKIAWATLAGSILLTLLIWI 131
Query: 125 IKDIV 129
+
Sbjct: 132 AGTMA 136
>gi|260464202|ref|ZP_05812395.1| succinate dehydrogenase, cytochrome b556 subunit [Mesorhizobium
opportunistum WSM2075]
gi|259030005|gb|EEW31288.1| succinate dehydrogenase, cytochrome b556 subunit [Mesorhizobium
opportunistum WSM2075]
Length = 139
Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 75/123 (60%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++ + RPLSPHL IYR TM +SI+HRITG +Y GT +V W A+ + +
Sbjct: 9 ANARRERPLSPHLTIYRPPITMTMSIIHRITGGALYFGTLLVAIWLMAAASSQGAFDWVN 68
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + LF YTWA++HHMLGG+R+L+WD L+K A+++A + SIL L+
Sbjct: 69 WAFGTWLGRLILFGYTWALMHHMLGGVRHLVWDTGAGLEKDTASKIAWATLAGSILLTLL 128
Query: 122 VWI 124
+W+
Sbjct: 129 IWV 131
>gi|170746891|ref|YP_001753151.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
radiotolerans JCM 2831]
gi|170653413|gb|ACB22468.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
radiotolerans JCM 2831]
Length = 133
Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 80/123 (65%), Gaps = 2/123 (1%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
+P+SPHLQIYR TM +S+ HRITG+ +Y GT +V W +A+G S + + GS
Sbjct: 11 QPMSPHLQIYRWTWTMAMSVFHRITGTALYGGTALVAIWLVALASGPVGYSYVAGFF-GS 69
Query: 68 VF-EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
+F + LF+YTW ++HHMLGGIR+LIWD + D+ MA++ +I S+ L++W +
Sbjct: 70 IFGRLILFVYTWILMHHMLGGIRHLIWDTGVGFDRDKRLSMARLTLIGSVALTLVIWAVA 129
Query: 127 DIV 129
+V
Sbjct: 130 LLV 132
>gi|17986443|ref|NP_539077.1| succinate dehydrogenase cytochrome B-556 subunit [Brucella
melitensis bv. 1 str. 16M]
gi|23502755|ref|NP_698882.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella suis
1330]
gi|62290760|ref|YP_222553.1| SdhC, succinate dehydrogenase, cytochrome b556 subunit [Brucella
abortus bv. 1 str. 9-941]
gi|82700671|ref|YP_415245.1| succinate dehydrogenase, cytochrome subunit B [Brucella melitensis
biovar Abortus 2308]
gi|161619821|ref|YP_001593708.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella canis
ATCC 23365]
gi|163843927|ref|YP_001628331.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella suis
ATCC 23445]
gi|225853341|ref|YP_002733574.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
melitensis ATCC 23457]
gi|254690049|ref|ZP_05153303.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella abortus
bv. 6 str. 870]
gi|254694537|ref|ZP_05156365.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella abortus
bv. 3 str. Tulya]
gi|254696162|ref|ZP_05157990.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella abortus
bv. 2 str. 86/8/59]
gi|254700548|ref|ZP_05162376.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella suis bv.
5 str. 513]
gi|254704918|ref|ZP_05166746.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella suis bv.
3 str. 686]
gi|254707568|ref|ZP_05169396.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella
pinnipedialis M163/99/10]
gi|254708895|ref|ZP_05170706.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella
pinnipedialis B2/94]
gi|254713680|ref|ZP_05175491.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella ceti
M644/93/1]
gi|254715969|ref|ZP_05177780.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella ceti
M13/05/1]
gi|254717971|ref|ZP_05179782.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella sp.
83/13]
gi|254731080|ref|ZP_05189658.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella abortus
bv. 4 str. 292]
gi|256030421|ref|ZP_05444035.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella
pinnipedialis M292/94/1]
gi|256045512|ref|ZP_05448395.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella
melitensis bv. 1 str. Rev.1]
gi|256059880|ref|ZP_05450067.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella neotomae
5K33]
gi|256112239|ref|ZP_05453160.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella
melitensis bv. 3 str. Ether]
gi|256258302|ref|ZP_05463838.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella abortus
bv. 9 str. C68]
gi|256370306|ref|YP_003107817.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella microti
CCM 4915]
gi|260169332|ref|ZP_05756143.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella sp.
F5/99]
gi|294851145|ref|ZP_06791818.1| succinate dehydrogenase [Brucella sp. NVSL 07-0026]
gi|306838923|ref|ZP_07471750.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella sp. NF
2653]
gi|306842942|ref|ZP_07475576.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella sp. BO2]
gi|306843359|ref|ZP_07475960.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella sp. BO1]
gi|17982039|gb|AAL51341.1| succinate dehydrogenase cytochrome b-556 subunit [Brucella
melitensis bv. 1 str. 16M]
gi|23348773|gb|AAN30797.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella suis
1330]
gi|62196892|gb|AAX75192.1| SdhC, succinate dehydrogenase, cytochrome b556 subunit [Brucella
abortus bv. 1 str. 9-941]
gi|82616772|emb|CAJ11859.1| Succinate dehydrogenase, cytochrome b subunit [Brucella melitensis
biovar Abortus 2308]
gi|161336632|gb|ABX62937.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella canis
ATCC 23365]
gi|163674650|gb|ABY38761.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella suis
ATCC 23445]
gi|225641706|gb|ACO01620.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella
melitensis ATCC 23457]
gi|256000469|gb|ACU48868.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella microti
CCM 4915]
gi|294819734|gb|EFG36733.1| succinate dehydrogenase [Brucella sp. NVSL 07-0026]
gi|306276050|gb|EFM57750.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella sp. BO1]
gi|306286870|gb|EFM58395.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella sp. BO2]
gi|306405993|gb|EFM62245.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella sp. NF
2653]
gi|326409905|gb|ADZ66970.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
melitensis M28]
gi|326539618|gb|ADZ87833.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella
melitensis M5-90]
Length = 132
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 77/124 (62%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++ RPLSPHL IY+ + TM +SIVHRITG +Y GT ++ W A E +++
Sbjct: 5 TVTRQRPLSPHLSIYKPVITMTMSIVHRITGGALYFGTLLLAAWLISAATSEECFNTINA 64
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + LF YTWA++HH+ GG+R+ IWD ++K A+++A +++ S++ ++V
Sbjct: 65 LFSSWIGRLILFGYTWALLHHLAGGVRHFIWDTGAAMEKHTASKIAWASVVFSVVATILV 124
Query: 123 WIIK 126
W++
Sbjct: 125 WVVA 128
>gi|260546025|ref|ZP_05821765.1| succinate dehydrogenase [Brucella abortus NCTC 8038]
gi|260562821|ref|ZP_05833307.1| succinate dehydrogenase [Brucella melitensis bv. 1 str. 16M]
gi|260567607|ref|ZP_05838077.1| succinate dehydrogenase [Brucella suis bv. 4 str. 40]
gi|260755583|ref|ZP_05867931.1| succinate dehydrogenase cytochrome b556 subunit [Brucella abortus
bv. 6 str. 870]
gi|260758809|ref|ZP_05871157.1| succinate dehydrogenase cytochrome b556 subunit [Brucella abortus
bv. 4 str. 292]
gi|260760533|ref|ZP_05872876.1| succinate dehydrogenase cytochrome b556 subunit [Brucella abortus
bv. 2 str. 86/8/59]
gi|260884609|ref|ZP_05896223.1| succinate dehydrogenase cytochrome b556 subunit [Brucella abortus
bv. 9 str. C68]
gi|261214856|ref|ZP_05929137.1| succinate dehydrogenase cytochrome b556 subunit [Brucella abortus
bv. 3 str. Tulya]
gi|261217733|ref|ZP_05932014.1| succinate dehydrogenase cytochrome b556 subunit [Brucella ceti
M13/05/1]
gi|261315053|ref|ZP_05954250.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
pinnipedialis M163/99/10]
gi|261316390|ref|ZP_05955587.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
pinnipedialis B2/94]
gi|261321419|ref|ZP_05960616.1| succinate dehydrogenase cytochrome b556 subunit [Brucella ceti
M644/93/1]
gi|261751052|ref|ZP_05994761.1| succinate dehydrogenase cytochrome b556 subunit [Brucella suis bv.
5 str. 513]
gi|261755614|ref|ZP_05999323.1| succinate dehydrogenase cytochrome b556 subunit [Brucella suis bv.
3 str. 686]
gi|261758847|ref|ZP_06002556.1| succinate dehydrogenase [Brucella sp. F5/99]
gi|265982914|ref|ZP_06095649.1| succinate dehydrogenase cytochrome b556 subunit [Brucella sp.
83/13]
gi|265987463|ref|ZP_06100020.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
pinnipedialis M292/94/1]
gi|265991935|ref|ZP_06104492.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
melitensis bv. 1 str. Rev.1]
gi|265993667|ref|ZP_06106224.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
melitensis bv. 3 str. Ether]
gi|265999292|ref|ZP_05465704.2| succinate dehydrogenase [Brucella melitensis bv. 2 str. 63/9]
gi|260096132|gb|EEW80008.1| succinate dehydrogenase [Brucella abortus NCTC 8038]
gi|260152837|gb|EEW87929.1| succinate dehydrogenase [Brucella melitensis bv. 1 str. 16M]
gi|260157125|gb|EEW92205.1| succinate dehydrogenase [Brucella suis bv. 4 str. 40]
gi|260669127|gb|EEX56067.1| succinate dehydrogenase cytochrome b556 subunit [Brucella abortus
bv. 4 str. 292]
gi|260670965|gb|EEX57786.1| succinate dehydrogenase cytochrome b556 subunit [Brucella abortus
bv. 2 str. 86/8/59]
gi|260675691|gb|EEX62512.1| succinate dehydrogenase cytochrome b556 subunit [Brucella abortus
bv. 6 str. 870]
gi|260874137|gb|EEX81206.1| succinate dehydrogenase cytochrome b556 subunit [Brucella abortus
bv. 9 str. C68]
gi|260916463|gb|EEX83324.1| succinate dehydrogenase cytochrome b556 subunit [Brucella abortus
bv. 3 str. Tulya]
gi|260922822|gb|EEX89390.1| succinate dehydrogenase cytochrome b556 subunit [Brucella ceti
M13/05/1]
gi|261294109|gb|EEX97605.1| succinate dehydrogenase cytochrome b556 subunit [Brucella ceti
M644/93/1]
gi|261295613|gb|EEX99109.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
pinnipedialis B2/94]
gi|261304079|gb|EEY07576.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
pinnipedialis M163/99/10]
gi|261738831|gb|EEY26827.1| succinate dehydrogenase [Brucella sp. F5/99]
gi|261740805|gb|EEY28731.1| succinate dehydrogenase cytochrome b556 subunit [Brucella suis bv.
5 str. 513]
gi|261745367|gb|EEY33293.1| succinate dehydrogenase cytochrome b556 subunit [Brucella suis bv.
3 str. 686]
gi|262764648|gb|EEZ10569.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
melitensis bv. 3 str. Ether]
gi|263003001|gb|EEZ15294.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
melitensis bv. 1 str. Rev.1]
gi|263093078|gb|EEZ17228.1| succinate dehydrogenase [Brucella melitensis bv. 2 str. 63/9]
gi|264659660|gb|EEZ29921.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
pinnipedialis M292/94/1]
gi|264661506|gb|EEZ31767.1| succinate dehydrogenase cytochrome b556 subunit [Brucella sp.
83/13]
Length = 142
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 77/123 (62%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++ RPLSPHL IY+ + TM +SIVHRITG +Y GT ++ W A E +++
Sbjct: 15 TVTRQRPLSPHLSIYKPVITMTMSIVHRITGGALYFGTLLLAAWLISAATSEECFNTINA 74
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + LF YTWA++HH+ GG+R+ IWD ++K A+++A +++ S++ ++V
Sbjct: 75 LFSSWIGRLILFGYTWALLHHLAGGVRHFIWDTGAAMEKHTASKIAWASVVFSVVATILV 134
Query: 123 WII 125
W++
Sbjct: 135 WVV 137
>gi|261220959|ref|ZP_05935240.1| succinate dehydrogenase cytochrome b556 subunit [Brucella ceti
B1/94]
gi|265996918|ref|ZP_06109475.1| succinate dehydrogenase cytochrome b556 subunit [Brucella ceti
M490/95/1]
gi|260919543|gb|EEX86196.1| succinate dehydrogenase cytochrome b556 subunit [Brucella ceti
B1/94]
gi|262551386|gb|EEZ07376.1| succinate dehydrogenase cytochrome b556 subunit [Brucella ceti
M490/95/1]
Length = 142
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 77/123 (62%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++ RPLSPHL IY+ + TM +SIVHRITG +Y GT ++ W A E +++
Sbjct: 15 TVTRQRPLSPHLSIYKPVITMTMSIVHRITGGALYFGTLLLAAWLISAATSEECFNTINA 74
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + LF YTWA++HH+ GG+R+ IWD ++K A+++A +++ S++ ++V
Sbjct: 75 LFSSWIGRLILFGYTWALLHHLAGGVRHFIWDTGAAMEKHTASKIAWASVVFSVVATILV 134
Query: 123 WII 125
W++
Sbjct: 135 WVV 137
>gi|256158405|ref|ZP_05456303.1| Succinate dehydrogenase [Brucella ceti M490/95/1]
gi|256253825|ref|ZP_05459361.1| Succinate dehydrogenase [Brucella ceti B1/94]
Length = 132
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 77/124 (62%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++ RPLSPHL IY+ + TM +SIVHRITG +Y GT ++ W A E +++
Sbjct: 5 TVTRQRPLSPHLSIYKPVITMTMSIVHRITGGALYFGTLLLAAWLISAATSEECFNTINA 64
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + LF YTWA++HH+ GG+R+ IWD ++K A+++A +++ S++ ++V
Sbjct: 65 LFSSWIGRLILFGYTWALLHHLAGGVRHFIWDTGAAMEKHTASKIAWASVVFSVVATILV 124
Query: 123 WIIK 126
W++
Sbjct: 125 WVVA 128
>gi|182679666|ref|YP_001833812.1| succinate dehydrogenase, cytochrome b556 subunit [Beijerinckia
indica subsp. indica ATCC 9039]
gi|182635549|gb|ACB96323.1| succinate dehydrogenase, cytochrome b556 subunit [Beijerinckia
indica subsp. indica ATCC 9039]
Length = 137
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 75/125 (60%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+ N RPLSPHL IYR + TM +SIVHRITG+ +YLGT ++ ++ A+G ++
Sbjct: 9 GRVGNQRPLSPHLLIYRPMLTMMMSIVHRITGAALYLGTLLLAWYLIAAASGPEAFATAS 68
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + + ++ L +TWA+ HH LGG+R++IWD D +A+ +I IL L
Sbjct: 69 IFFNSILGKLILLGFTWALFHHFLGGVRHMIWDAGYGFDAAGREFLAQATLIGGILLTLF 128
Query: 122 VWIIK 126
VWI+
Sbjct: 129 VWILA 133
>gi|239833035|ref|ZP_04681364.1| succinate dehydrogenase, cytochrome b556 subunit [Ochrobactrum
intermedium LMG 3301]
gi|239825302|gb|EEQ96870.1| succinate dehydrogenase, cytochrome b556 subunit [Ochrobactrum
intermedium LMG 3301]
Length = 152
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 77/123 (62%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++ RPLSPHL IY+ + TM +SIVHRITG +Y GT ++ W A E +++
Sbjct: 25 TVTRQRPLSPHLSIYKPVITMTMSIVHRITGGALYFGTLLLAAWLISAAVSEECFNTVNA 84
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + LF YTWA++HH+ GG+R+LIWD L+K A+++A ++ S++ ++V
Sbjct: 85 LFSSWIGRLILFGYTWALLHHLAGGVRHLIWDTGAGLEKHTASRIAWTTVVFSVIATILV 144
Query: 123 WII 125
W++
Sbjct: 145 WVV 147
>gi|148560663|ref|YP_001259728.1| succinate dehydrogenase, cytochrome subunit B [Brucella ovis ATCC
25840]
gi|189024973|ref|YP_001935741.1| Succinate dehydrogenase [Brucella abortus S19]
gi|225628104|ref|ZP_03786139.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella ceti
str. Cudo]
gi|237816266|ref|ZP_04595259.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella abortus
str. 2308 A]
gi|261323851|ref|ZP_05963048.1| succinate dehydrogenase cytochrome B subunit [Brucella neotomae
5K33]
gi|297247147|ref|ZP_06930865.1| succinate dehydrogenase cytochrome b-556 subunit [Brucella abortus
bv. 5 str. B3196]
gi|148371920|gb|ABQ61899.1| succinate dehydrogenase, cytochrome B subunit [Brucella ovis ATCC
25840]
gi|189020545|gb|ACD73267.1| Succinate dehydrogenase [Brucella abortus S19]
gi|225616929|gb|EEH13976.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella ceti
str. Cudo]
gi|237788333|gb|EEP62548.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella abortus
str. 2308 A]
gi|261299831|gb|EEY03328.1| succinate dehydrogenase cytochrome B subunit [Brucella neotomae
5K33]
gi|297174316|gb|EFH33663.1| succinate dehydrogenase cytochrome b-556 subunit [Brucella abortus
bv. 5 str. B3196]
Length = 187
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 77/123 (62%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++ RPLSPHL IY+ + TM +SIVHRITG +Y GT ++ W A E +++
Sbjct: 60 TVTRQRPLSPHLSIYKPVITMTMSIVHRITGGALYFGTLLLAAWLISAATSEECFNTINA 119
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + LF YTWA++HH+ GG+R+ IWD ++K A+++A +++ S++ ++V
Sbjct: 120 LFSSWIGRLILFGYTWALLHHLAGGVRHFIWDTGAAMEKHTASKIAWASVVFSVVATILV 179
Query: 123 WII 125
W++
Sbjct: 180 WVV 182
>gi|75676982|ref|YP_319403.1| succinate dehydrogenase, cytochrome b subunit [Nitrobacter
winogradskyi Nb-255]
gi|74421852|gb|ABA06051.1| succinate dehydrogenase subunit C [Nitrobacter winogradskyi Nb-255]
Length = 141
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 75/124 (60%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M +++ RPLSPHLQIYR TM +SIVHR TG +Y GT ++V+W +++G +++
Sbjct: 8 MMTVRIERPLSPHLQIYRWTLTMTLSIVHRATGVALYFGTLLLVWWLMAVSSGPGAYAAV 67
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + + F YTWA++HHMLGG+R+L+WD+ + + +I IL
Sbjct: 68 QSFTSSWAGRLIAFGYTWALMHHMLGGVRHLVWDLGYGFQPTEREWLTRATLIGGILLTA 127
Query: 121 IVWI 124
++WI
Sbjct: 128 LLWI 131
>gi|158425367|ref|YP_001526659.1| succinate dehydrogenase cytochrome b-556 subunit [Azorhizobium
caulinodans ORS 571]
gi|158332256|dbj|BAF89741.1| succinate dehydrogenase cytochrome b-556 subunit [Azorhizobium
caulinodans ORS 571]
Length = 133
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 71/118 (60%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHLQIYR +PTM +SIVHR TG +Y GT ++++W A+
Sbjct: 10 RPLSPHLQIYRPLPTMVMSIVHRATGIALYFGTVLLIWWLLAAASTPSAYGLFTSIAGSW 69
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ + LF YTWA+IHH LGGIR+LIWD + +AK+ ++ S+ +IVW+I
Sbjct: 70 IGRLVLFGYTWALIHHALGGIRHLIWDTIRGFGAQERVLLAKLTLVGSVTLTIIVWVI 127
>gi|153008286|ref|YP_001369501.1| succinate dehydrogenase cytochrome b556 subunit [Ochrobactrum
anthropi ATCC 49188]
gi|151560174|gb|ABS13672.1| Succinate dehydrogenase cytochrome b556 subunit [Ochrobactrum
anthropi ATCC 49188]
Length = 132
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 76/124 (61%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++ RPLSPHL IY+ + TM +SIVHRITG +Y GT ++ W A E + +
Sbjct: 5 TVTRQRPLSPHLSIYKPVITMTMSIVHRITGGALYFGTLLLAAWLISAAVSEECFNFVNA 64
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + LF YTWA++HH+ GG+R+LIWD L+K A+++A ++ S++ ++V
Sbjct: 65 LFSSWIGRLILFGYTWALLHHLAGGVRHLIWDTGAGLEKHTASKIAWATVVFSVIATILV 124
Query: 123 WIIK 126
W++
Sbjct: 125 WVVA 128
>gi|110635575|ref|YP_675783.1| succinate dehydrogenase subunit C [Mesorhizobium sp. BNC1]
gi|110286559|gb|ABG64618.1| succinate dehydrogenase subunit C [Chelativorans sp. BNC1]
Length = 134
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 72/121 (59%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
S RPLSPHLQIYR PTM +SI HRITG+ +Y G + W A+ +
Sbjct: 4 STTQARPLSPHLQIYRFTPTMAMSIAHRITGTALYFGILLFALWLLAAASSREQFDFVNG 63
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + +F Y+W +IHHMLGGIR+LIWD L+K+ + ++A N+I SIL LI+
Sbjct: 64 LFGSIIGRIVIFGYSWVLIHHMLGGIRHLIWDTIHGLEKETSRRLAIANLIGSILVTLII 123
Query: 123 W 123
W
Sbjct: 124 W 124
>gi|188583472|ref|YP_001926917.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
populi BJ001]
gi|179346970|gb|ACB82382.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
populi BJ001]
Length = 133
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 72/122 (59%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
+PLSPHLQIYR TM +S+ HRITG+ +Y GT +V W +A+G ++ +
Sbjct: 11 QPLSPHLQIYRWTWTMAMSVFHRITGTALYGGTFLVAVWLVALASGPRAYDTVAWFFGSL 70
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKD 127
+ LF YTW ++HHMLGGIR+ IWD D+ +A+ +I S+ +++W I
Sbjct: 71 IGRAILFAYTWVLMHHMLGGIRHFIWDAGYGFDRDRRLGLARATLIGSVTLTIVIWAIAL 130
Query: 128 IV 129
+V
Sbjct: 131 LV 132
>gi|220926986|ref|YP_002502288.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
nodulans ORS 2060]
gi|219951593|gb|ACL61985.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
nodulans ORS 2060]
Length = 133
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 76/120 (63%), Gaps = 2/120 (1%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHLQIYR TM +S+ HR+TG +Y GT +V W +A+G+ + ++ GS
Sbjct: 11 RPLSPHLQIYRWTWTMAMSVAHRLTGIALYGGTALVAIWLVALASGKAAYDPV-AWLYGS 69
Query: 68 VF-EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
+ + +F+YTW ++HHMLGGIR+L+WD ++ MAK ++ S++ L++W +
Sbjct: 70 ILGRLVIFVYTWILMHHMLGGIRHLVWDFGYGMEPGTRIAMAKYTLVGSVVLTLVIWAVA 129
>gi|23011496|ref|ZP_00051838.1| COG2009: Succinate dehydrogenase/fumarate reductase, cytochrome b
subunit [Magnetospirillum magnetotacticum MS-1]
Length = 134
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 72/119 (60%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
+PLSPHLQIYR TM +S+ HRITG+ +Y GT +V W +A+G ++ +
Sbjct: 11 QPLSPHLQIYRWTWTMAMSVFHRITGTALYGGTFLVAVWLVALASGPRAYDAVAWFFGSW 70
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
+ + LF YTW ++HHMLGGIR+ IWD D+ +A+ +I S++ +++W +
Sbjct: 71 IGRLILFAYTWVLMHHMLGGIRHFIWDAGYGFDRDRRLGLARATLIGSVVLTVVIWALA 129
>gi|163853006|ref|YP_001641049.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
extorquens PA1]
gi|218531816|ref|YP_002422632.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
chloromethanicum CM4]
gi|254562942|ref|YP_003070037.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
extorquens DM4]
gi|163664611|gb|ABY31978.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
extorquens PA1]
gi|218524119|gb|ACK84704.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
chloromethanicum CM4]
gi|254270220|emb|CAX26214.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
extorquens DM4]
Length = 133
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 71/122 (58%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
+PLSPHLQIYR TM +S+ HRITG+ +Y GT +V W +A+G ++ +
Sbjct: 11 QPLSPHLQIYRWTWTMAMSVFHRITGTALYGGTFLVAVWLVALASGPRAYDTVAWFFGSW 70
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKD 127
LF YTW ++HHMLGG+R+ IWD D+ +A+ +I S+ +++W I
Sbjct: 71 AGRAILFAYTWVLLHHMLGGLRHFIWDAGYGFDRDRRLGLARATLIGSVTLTIVIWAIAL 130
Query: 128 IV 129
+V
Sbjct: 131 LV 132
>gi|240140347|ref|YP_002964826.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
extorquens AM1]
gi|27902656|gb|AAO24619.1| succinate dehydrogenase gamma subunit [Methylobacterium extorquens]
gi|240010323|gb|ACS41549.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
extorquens AM1]
Length = 133
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 71/122 (58%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
+PLSPHLQIYR TM +S+ HR+TG+ +Y GT +V W +A+G ++ +
Sbjct: 11 QPLSPHLQIYRWTWTMAMSVFHRVTGTALYGGTFLVAVWLVALASGPRAYDTVAWFFGSW 70
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKD 127
LF YTW ++HHMLGG+R+ IWD D+ +A+ +I SI +++W I
Sbjct: 71 AGRAILFAYTWVLLHHMLGGLRHFIWDAGYGFDRDRRLGLARATLIGSITLTIVIWAIAL 130
Query: 128 IV 129
+V
Sbjct: 131 LV 132
>gi|154245910|ref|YP_001416868.1| succinate dehydrogenase cytochrome b556 subunit [Xanthobacter
autotrophicus Py2]
gi|154159995|gb|ABS67211.1| Succinate dehydrogenase cytochrome b556 subunit [Xanthobacter
autotrophicus Py2]
Length = 133
Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 71/124 (57%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
S + +RPLSPHLQIYR + TM +SIVHRITG +Y GT ++V+W A S R
Sbjct: 4 SPQRIDRPLSPHLQIYRPLFTMVMSIVHRITGVGLYFGTAILVWWLLAAATSPSAFESFR 63
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + LF YTWA++HH LGG R+ IWD K +A+ + S+ +I
Sbjct: 64 SVAGSPIGLIVLFGYTWALLHHALGGARHFIWDFIHGFGPKERMLLAQATLAGSVALTVI 123
Query: 122 VWII 125
+W++
Sbjct: 124 LWVV 127
>gi|118590533|ref|ZP_01547935.1| succinate dehydrogenase cytochrome B-556 subunit [Stappia aggregata
IAM 12614]
gi|118436996|gb|EAV43635.1| succinate dehydrogenase cytochrome B-556 subunit [Stappia aggregata
IAM 12614]
Length = 132
Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 77/124 (62%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+ ++ NRPLSPHLQIY+ I TM +SI+HRITG+ +Y GT ++ +W A G +
Sbjct: 4 ADLRGNRPLSPHLQIYKPILTMVMSILHRITGAALYFGTVLLAWWLIAAAAGPSYFDFVN 63
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + LF +TWA++HHMLGG+R+ IWD+ K+ +AK II S+ LI
Sbjct: 64 GIYGSIIGRLILFGFTWALVHHMLGGLRHFIWDMGAGFGKEAREWLAKATIIGSVSVTLI 123
Query: 122 VWII 125
+WII
Sbjct: 124 LWII 127
>gi|92119075|ref|YP_578804.1| succinate dehydrogenase, cytochrome b subunit [Nitrobacter
hamburgensis X14]
gi|91801969|gb|ABE64344.1| succinate dehydrogenase subunit C [Nitrobacter hamburgensis X14]
Length = 132
Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 77/127 (60%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+++ RPLSPHLQIYR TM +S+VHR TG +Y GT ++V+W +++G ++++
Sbjct: 2 TVRIERPLSPHLQIYRWTLTMALSVVHRATGMALYFGTLLLVWWLIAVSSGPGAYAAVQS 61
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + + F YTWA++HHML G+R+L+WD+ + + +I IL +++
Sbjct: 62 FTASWIGRLIAFGYTWALMHHMLSGVRHLVWDLGYGFKPAEREWLTRAALIGGILLTVLL 121
Query: 123 WIIKDIV 129
WI+ V
Sbjct: 122 WIVAYAV 128
>gi|85714477|ref|ZP_01045465.1| succinate dehydrogenase, cytochrome b subunit [Nitrobacter sp.
Nb-311A]
gi|85698924|gb|EAQ36793.1| succinate dehydrogenase, cytochrome b subunit [Nitrobacter sp.
Nb-311A]
Length = 133
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 74/122 (60%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+++ RPLSPHLQIYR TM +SIVHR TG +Y GT ++V+W +++G ++++
Sbjct: 2 TVRIERPLSPHLQIYRWTLTMALSIVHRATGVALYFGTLLLVWWLMAVSSGPGAYAAVQS 61
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + F YTWA++HHML G+R+L+WD+ + + +I IL +++
Sbjct: 62 FTSSWAGRLIAFGYTWALMHHMLSGVRHLVWDLGYGFKPTEREWLTRAALIGGILLTVLL 121
Query: 123 WI 124
WI
Sbjct: 122 WI 123
>gi|217979669|ref|YP_002363816.1| succinate dehydrogenase, cytochrome b556 subunit [Methylocella
silvestris BL2]
gi|217505045|gb|ACK52454.1| succinate dehydrogenase, cytochrome b556 subunit [Methylocella
silvestris BL2]
Length = 131
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 74/123 (60%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
S +RPLSPHLQIYR TM +SIVHRITG+ +Y GT ++ ++ A+G ++
Sbjct: 3 SGGPASRPLSPHLQIYRPTLTMMMSIVHRITGAALYGGTLLLAWFLISAASGPGAFAAAS 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ ++ LF +TWA+ HH+LGG+R+LIWD+ LD +A +I I L+
Sbjct: 63 HVVSSFFGKLVLFGFTWALFHHLLGGVRHLIWDLGYGLDDPEREWLAWATLIGGIALTLL 122
Query: 122 VWI 124
VW+
Sbjct: 123 VWV 125
>gi|170744094|ref|YP_001772749.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
sp. 4-46]
gi|168198368|gb|ACA20315.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
sp. 4-46]
Length = 133
Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 74/117 (63%), Gaps = 2/117 (1%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHLQIYR TM +S+ HR+TG +Y GT +V W +A+G+ + ++ GS
Sbjct: 11 RPLSPHLQIYRWTWTMAMSVAHRLTGIALYGGTALVAVWLVALASGKAAYDPV-AWLYGS 69
Query: 68 VF-EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + +F+YTW ++HHMLGGIR+LIWD ++ MA+ ++ S + +++W
Sbjct: 70 ILGRLVIFVYTWILMHHMLGGIRHLIWDFGHGMEPGTRIAMARYTLVGSAVLTVVIW 126
>gi|328541811|ref|YP_004301920.1| Succinate dehydrogenase, cytochrome b556 subunit [polymorphum
gilvum SL003B-26A1]
gi|326411563|gb|ADZ68626.1| Succinate dehydrogenase, cytochrome b556 subunit [Polymorphum
gilvum SL003B-26A1]
Length = 132
Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 77/125 (61%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHLQIY+ I TM +SI+HRITG+ +Y GT ++ +W A G +
Sbjct: 7 QGNRPLSPHLQIYKPILTMVMSILHRITGAALYFGTLLLAWWLIAAAAGPAYFDFVNGIY 66
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ + LF +TWA++HHMLGGIR+ IWD+ ++ +A+ II S+ +++WI
Sbjct: 67 GSILGRLVLFGFTWALVHHMLGGIRHFIWDMGAGFGREAREWLARATIIGSVAVTILLWI 126
Query: 125 IKDIV 129
+ +V
Sbjct: 127 VGYMV 131
>gi|298293274|ref|YP_003695213.1| succinate dehydrogenase, cytochrome b556 subunit [Starkeya novella
DSM 506]
gi|296929785|gb|ADH90594.1| succinate dehydrogenase, cytochrome b556 subunit [Starkeya novella
DSM 506]
Length = 130
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 72/125 (57%), Gaps = 4/125 (3%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RPLSPHLQIYR + TM +SIVHRITG +Y GT ++V W A+ ++
Sbjct: 6 ERPLSPHLQIYRPMLTMMMSIVHRITGVALYFGTLLLVIWLVAAASSPAAFDTVNGLYGS 65
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI-LTVL---IV 122
+ + L Y+WA+IHH LGGIR+ IWD + MA+ I SI LTVL I+
Sbjct: 66 WIGLLVLVGYSWALIHHALGGIRHFIWDTGAGFGPQAREWMARATIGGSIGLTVLLWIII 125
Query: 123 WIIKD 127
W++K
Sbjct: 126 WLVKG 130
>gi|307942783|ref|ZP_07658128.1| succinate dehydrogenase, cytochrome b556 subunit [Roseibium sp.
TrichSKD4]
gi|307773579|gb|EFO32795.1| succinate dehydrogenase, cytochrome b556 subunit [Roseibium sp.
TrichSKD4]
Length = 132
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 75/121 (61%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHLQIY+ I TM +SI+HRITG+ +Y GT ++ +W A G +
Sbjct: 7 RGNRPLSPHLQIYKPILTMVMSILHRITGAALYFGTVLLAWWLIAAAAGPTYFEFVNEIY 66
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ + LF +TWA++HHMLGG+R+ IWD+ ++ +A+ II S+ +++WI
Sbjct: 67 SSFIGRLILFGFTWALVHHMLGGLRHFIWDMGAGFGREAREWLARATIIGSVGLTILLWI 126
Query: 125 I 125
I
Sbjct: 127 I 127
>gi|90421600|ref|YP_529970.1| succinate dehydrogenase, cytochrome b subunit [Rhodopseudomonas
palustris BisB18]
gi|90103614|gb|ABD85651.1| succinate dehydrogenase subunit C [Rhodopseudomonas palustris
BisB18]
Length = 132
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 72/124 (58%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ + RPLSPH+Q YR TM +SIVHR+TG +Y GT ++ +W +A G ++++
Sbjct: 2 TARIERPLSPHMQAYRWSLTMALSIVHRLTGITLYFGTLLLAWWLIAVAAGPSAYANVQA 61
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + + LF YTW+++HHML G+R+ IWD+ M +I ++ +++
Sbjct: 62 FTGSWIGRLMLFGYTWSLMHHMLSGVRHFIWDLGYGFTAAERESMTWAALIGGVVLTVLL 121
Query: 123 WIIK 126
WI+
Sbjct: 122 WIVA 125
>gi|163869248|ref|YP_001610504.1| SdhC succinate dehydrogenase cytochrome b-556 subunit [Bartonella
tribocorum CIP 105476]
gi|161018951|emb|CAK02509.1| SdhC succinate dehydrogenase cytochrome b-556 subunit [Bartonella
tribocorum CIP 105476]
Length = 133
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 73/122 (59%), Gaps = 3/122 (2%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RP SPH+ IYR TM +SI HRITG +Y+GT W IA GE T ++ +
Sbjct: 8 KERPRSPHISIYRWTITMAMSIAHRITGMALYVGTVFFAVWLIAIACGEETFRTVH-EIY 66
Query: 66 GSVFEVC-LFLYTWAVIHHMLGGIRYLIWDVSLC-LDKKIATQMAKINIIASILTVLIVW 123
S F +C LFLYT A +HHM+GG+R+++WD+ C L K+ AT A + S++ +W
Sbjct: 67 SSWFGLCILFLYTLAGVHHMVGGVRHIVWDLKPCLLAKEKATATAWATVFISLIVTFAIW 126
Query: 124 II 125
II
Sbjct: 127 II 128
>gi|154251886|ref|YP_001412710.1| succinate dehydrogenase cytochrome b556 subunit [Parvibaculum
lavamentivorans DS-1]
gi|154155836|gb|ABS63053.1| Succinate dehydrogenase cytochrome b556 subunit [Parvibaculum
lavamentivorans DS-1]
Length = 135
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 62/98 (63%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
+RPLSPHLQIYR+ TM +SI+HR TG +Y GT +V +W A G ++ +
Sbjct: 9 SRPLSPHLQIYRVTITMAMSIIHRFTGMGLYAGTALVAWWLVAAATGPEAYATFQAVAGS 68
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIA 104
+ ++ LF +TWA++HH+ GG+RYL+WD + + A
Sbjct: 69 WIGQLVLFGFTWALLHHLFGGLRYLLWDAIVATSPRSA 106
>gi|146337397|ref|YP_001202445.1| succinate dehydrogenase cytochrome b556 subunit [Bradyrhizobium sp.
ORS278]
gi|146190203|emb|CAL74195.1| Succinate dehydrogenase cytochrome b556 subunit [Bradyrhizobium sp.
ORS278]
Length = 132
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 71/127 (55%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ + RPLSPHLQ YR TM +SIVHR TG +Y GT ++ +W A+G S ++
Sbjct: 2 TARIERPLSPHLQTYRWTLTMILSIVHRATGVALYFGTLLLAWWLIAAASGPSAYSYVQG 61
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+M + + +F YTWA++HH+L GIR+ +WD+ + +I I ++V
Sbjct: 62 FMGSFLGRLIVFGYTWALLHHLLSGIRHFVWDLGYGFKPNERETLTWGALIGGISLTVLV 121
Query: 123 WIIKDIV 129
WI+ V
Sbjct: 122 WIVAYAV 128
>gi|27375623|ref|NP_767152.1| succinate dehydrogenase cytochrome B-556 subunit [Bradyrhizobium
japonicum USDA 110]
gi|3169722|gb|AAC17940.1| succinate dehydrogenase membrane anchor subunit [Bradyrhizobium
japonicum]
gi|27348760|dbj|BAC45777.1| succinate dehydrogenase cytochrome B-556 subunit [Bradyrhizobium
japonicum USDA 110]
Length = 132
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 69/120 (57%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RPLSPH+Q+YR TM +SIVHR TG +Y GT ++ +W A+G S ++ +
Sbjct: 6 ERPLSPHMQVYRWTLTMALSIVHRATGIALYAGTLLLAWWLIAAASGPAAYSHVQAFTGS 65
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
+ + +F YTWA++HHML GIR+ +WD+ + +I I+ +++WI+
Sbjct: 66 IIGRLIVFGYTWALMHHMLSGIRHFVWDLGYGFKANEREALTWGALIGGIVLTVLIWIVA 125
>gi|240851320|ref|YP_002972723.1| succinate dehydrogenase cytochrome b560 subunit [Bartonella
grahamii as4aup]
gi|240268443|gb|ACS52031.1| succinate dehydrogenase cytochrome b560 subunit [Bartonella
grahamii as4aup]
Length = 133
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 74/122 (60%), Gaps = 3/122 (2%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RP SPH+ IYR TM +SI HR+TG +Y+G + W IA GE T ++ +
Sbjct: 8 KERPRSPHISIYRWTITMAMSIAHRVTGMALYVGMVFLAVWLIAIACGEETFRTVH-EIY 66
Query: 66 GSVFEVC-LFLYTWAVIHHMLGGIRYLIWDVSLC-LDKKIATQMAKINIIASILTVLIVW 123
S F +C LFLYT A +HHM+GGIR+++WD+ C L K+ AT A + S++ ++W
Sbjct: 67 SSWFGLCILFLYTLAGVHHMVGGIRHIVWDMMPCLLAKEKATVTAWATVFISLIVTFVIW 126
Query: 124 II 125
II
Sbjct: 127 II 128
>gi|323138215|ref|ZP_08073287.1| succinate dehydrogenase, cytochrome b556 subunit [Methylocystis sp.
ATCC 49242]
gi|322396467|gb|EFX98996.1| succinate dehydrogenase, cytochrome b556 subunit [Methylocystis sp.
ATCC 49242]
Length = 135
Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 75/129 (58%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ + RPLSPHL +Y+ + TM +SI HRITG+ +Y+G ++ + A G S+
Sbjct: 6 LDKLAAKRPLSPHLSVYKPMLTMMMSIAHRITGAGLYVGMALLALFLLGAAMGGWVFSAF 65
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
G + + +FL TWA+ HH+LGG+R+ +WD L +D K +A+ + + L
Sbjct: 66 SWLGSGFIGGLIVFLVTWAIFHHLLGGVRHALWDRGLYMDPKGREFLAQATLGGGVTLTL 125
Query: 121 IVWIIKDIV 129
+VW++K +V
Sbjct: 126 LVWVLKSLV 134
>gi|312112888|ref|YP_004010484.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodomicrobium
vannielii ATCC 17100]
gi|311218017|gb|ADP69385.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodomicrobium
vannielii ATCC 17100]
Length = 148
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 67/116 (57%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
+P+SPHL IYR M +SI+HR+TG Y G+ ++ W A E +++ Y+
Sbjct: 16 KPMSPHLSIYRFKINMILSIMHRVTGITNYFGSLILAIWIASAATSEQAFNTVSSYLATP 75
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ V L +TW+V+HHMLGGIR+ +WDV K+ ++ ++I SI I+W
Sbjct: 76 LGLVILIGFTWSVMHHMLGGIRHFVWDVGWGFSKEAVKFLSWASLIGSITLTAIIW 131
>gi|121602258|ref|YP_988426.1| succinate dehydrogenase, cytochrome b556 subunit [Bartonella
bacilliformis KC583]
gi|120614435|gb|ABM45036.1| succinate dehydrogenase, cytochrome b556 subunit [Bartonella
bacilliformis KC583]
Length = 133
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 74/122 (60%), Gaps = 3/122 (2%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+RP SPH+ IYR TM +SI HRITG +Y G ++ W IA GE ++ +
Sbjct: 8 KDRPRSPHVTIYRWSITMAMSIAHRITGIAIYFGISLLAIWLMAIACGESAFKTVN-EIY 66
Query: 66 GSVFEVC-LFLYTWAVIHHMLGGIRYLIWDVSLC-LDKKIATQMAKINIIASILTVLIVW 123
GS F +C LFL T+A +HHM+G IR+LI ++ C LDKK A +A NI S +++W
Sbjct: 67 GSFFGLCVLFLCTFAGVHHMVGDIRHLIGELKPCLLDKKQANFIAWANIFISFSATVVIW 126
Query: 124 II 125
+I
Sbjct: 127 VI 128
>gi|88812336|ref|ZP_01127586.1| Succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Nitrococcus mobilis Nb-231]
gi|88790343|gb|EAR21460.1| Succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Nitrococcus mobilis Nb-231]
Length = 126
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 71/122 (58%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
++RPLSPHLQIYR T+ SI HRITG+++ LGT V +W +A+G ++ R +
Sbjct: 3 SDDRPLSPHLQIYRFPTTVITSITHRITGALLALGTLGVTYWLIALASGPQVYAAARAFF 62
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
++ LF +T+A+ +H+ GIR+L W + + + A + A +A+ + +I W+
Sbjct: 63 GNGFVQLILFFWTYALFYHLCNGIRHLGWAIDYGFELERARKSAVAVFVAAGILTVITWL 122
Query: 125 IK 126
Sbjct: 123 FA 124
>gi|91974961|ref|YP_567620.1| succinate dehydrogenase, cytochrome b subunit [Rhodopseudomonas
palustris BisB5]
gi|91681417|gb|ABE37719.1| succinate dehydrogenase subunit C [Rhodopseudomonas palustris
BisB5]
Length = 129
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 69/120 (57%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
+RPLSPH+Q YR TM +SIVHR TG +Y GT ++ +W A G + ++L+ +
Sbjct: 3 DRPLSPHMQAYRWSLTMALSIVHRATGIALYFGTLLLAWWLIACAAGPASYANLQAFTGS 62
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
+ + LF YTW+++HH+L G+R+ +WD+ + +I ++ ++ W+I
Sbjct: 63 WIGRLILFGYTWSLMHHLLSGVRHFVWDLGYGFKTADREWLTWAALIGGVVLTVLFWVIA 122
>gi|115522538|ref|YP_779449.1| succinate dehydrogenase, cytochrome b subunit [Rhodopseudomonas
palustris BisA53]
gi|115516485|gb|ABJ04469.1| succinate dehydrogenase subunit C [Rhodopseudomonas palustris
BisA53]
Length = 132
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 71/118 (60%), Gaps = 5/118 (4%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RPLSPH+Q YR TM +SIVHR TG +Y GT V+ +W + G ++++ +
Sbjct: 6 ERPLSPHMQAYRWTLTMTLSIVHRATGVALYFGTLVLAWWLIAVGAGPGAYANVQAFTGS 65
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLC---LDKKIATQMAKINIIASILTVLI 121
+ ++ +F YTW+++HH L GIR+ +WD+ D+++ T A I + +LTVL+
Sbjct: 66 WIGKLIMFGYTWSLMHHFLSGIRHFVWDLGYGYKPADRELLTWAALIGGV--VLTVLL 121
>gi|255261406|ref|ZP_05340748.1| succinate dehydrogenase, cytochrome b556 subunit [Thalassiobium sp.
R2A62]
gi|255103741|gb|EET46415.1| succinate dehydrogenase, cytochrome b556 subunit [Thalassiobium sp.
R2A62]
Length = 127
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL IYR T SI R+TG+ + + ++V+WF A G ++ ++
Sbjct: 6 RGNRPLSPHLTIYRPQMTSMTSIFVRLTGNALLIAALMIVWWFVAAATGPEAFATADGFL 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS-ILTVLIV 122
++ F TWA+ +H+LGG+R+LIWD+ LD + A M II S +LTVL V
Sbjct: 66 RSWFGDLVFFASTWAIWYHLLGGLRHLIWDMGYGLDLQSAYNMGYAMIIGSLLLTVLTV 124
>gi|39933296|ref|NP_945572.1| succinate dehydrogenase cytochrome b subunit [Rhodopseudomonas
palustris CGA009]
gi|192288649|ref|YP_001989254.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodopseudomonas
palustris TIE-1]
gi|39652921|emb|CAE25663.1| succinate dehydrogenase membrane anchor/cytochrome b subunit
[Rhodopseudomonas palustris CGA009]
gi|192282398|gb|ACE98778.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodopseudomonas
palustris TIE-1]
Length = 132
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 70/124 (56%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ + RPLSPH+Q YR TM +SIVHR TG +Y GT ++ +W A G ++++
Sbjct: 2 TARIERPLSPHMQAYRWSLTMTMSIVHRATGIALYSGTLLLAWWLIACAAGPTAYANVQA 61
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + + +F YTW+++HHML G+R+ +WD+ + +I I+ +++
Sbjct: 62 FTGSWIGRLIVFGYTWSLMHHMLSGVRHFVWDLGYGFKTADREWLTWAALIGGIVLTVLL 121
Query: 123 WIIK 126
W+I
Sbjct: 122 WVIA 125
>gi|49474757|ref|YP_032799.1| succinate dehydrogenase cytochrome b560 subunit [Bartonella
quintana str. Toulouse]
gi|49240261|emb|CAF26731.1| Succinate dehydrogenase cytochrome b560 subunit [Bartonella
quintana str. Toulouse]
Length = 133
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 74/126 (58%), Gaps = 3/126 (2%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+++ RP SPH+ IYR TM +SI HRITG +Y G W IA G+ ++
Sbjct: 4 TTMIKERPRSPHVSIYRWTITMAMSIAHRITGLGLYFGMIFFTIWLISIACGDEMFRTVH 63
Query: 62 CYMDGSVFEVC-LFLYTWAVIHHMLGGIRYLIWDVSLC-LDKKIATQMAKINIIASILTV 119
+ S+ +C LFLYT A +HHM+G IR+++WD++ C LDKK A A + S++
Sbjct: 64 -EIYSSLPGLCILFLYTLAGVHHMVGDIRHIVWDMNPCLLDKKKAVLTAWATVFISLIVT 122
Query: 120 LIVWII 125
L +WII
Sbjct: 123 LTIWII 128
>gi|114328744|ref|YP_745901.1| succinate dehydrogenase cytochrome b556 subunit [Granulibacter
bethesdensis CGDNIH1]
gi|114316918|gb|ABI62978.1| succinate dehydrogenase cytochrome b556 subunit [Granulibacter
bethesdensis CGDNIH1]
Length = 197
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 70/123 (56%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
+RPLSPHLQ+YR TM +SI+HR+TG +GT ++ +W A +H + +M
Sbjct: 74 HRPLSPHLQVYRWPITMALSILHRVTGVAAAIGTLLLTWWLVAAATSDHAYDIVSGFMRS 133
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
+ LF +T A+++H + GIR+L+WD DK A + + I + + L + +WI
Sbjct: 134 GFGLLLLFGWTVALVYHFINGIRHLVWDAGYGFDKHEANRSSYIVLGLTALFTVAIWIAA 193
Query: 127 DIV 129
+V
Sbjct: 194 AVV 196
>gi|49476235|ref|YP_034276.1| succinate dehydrogenase cytochrome b560 subunit [Bartonella
henselae str. Houston-1]
gi|49239043|emb|CAF28343.1| Succinate dehydrogenase cytochrome b560 subunit [Bartonella
henselae str. Houston-1]
Length = 133
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL-RCYM 64
RP SPH+ IYR TM +SI HRITG +Y G + W I+ G ++ R Y
Sbjct: 8 KQRPRSPHVSIYRWTITMAMSIAHRITGIALYFGMVFLAIWLISISCGVEAFRTVHRIYT 67
Query: 65 DGSVFEVC-LFLYTWAVIHHMLGGIRYLIWDVSLC-LDKKIATQMAKINIIASILTVLIV 122
S +C LFLYT A IHHM+GG+R+++WD+ C L K+ AT A + S++ +
Sbjct: 68 --SFPGLCILFLYTLAGIHHMVGGVRHIVWDIKPCLLAKEKATMTAWATVFISLIITFTI 125
Query: 123 WII 125
WII
Sbjct: 126 WII 128
>gi|86747453|ref|YP_483949.1| succinate dehydrogenase, cytochrome b subunit [Rhodopseudomonas
palustris HaA2]
gi|86570481|gb|ABD05038.1| succinate dehydrogenase subunit C [Rhodopseudomonas palustris HaA2]
Length = 132
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 71/124 (57%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ + +RPLSPH+Q YR TM +SIVHR TG +Y GT ++ +W A G ++++
Sbjct: 2 TARIDRPLSPHMQAYRWSLTMALSIVHRATGIALYFGTLLLAWWLIACAAGPAAYANVQA 61
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + + LF YTWA++HH+L G+R+ +WD+ + +I I+ +++
Sbjct: 62 FTGSWIGRLILFGYTWALMHHLLSGVRHFVWDLGYGFKTADREWLTWAALIGGIVLTVLL 121
Query: 123 WIIK 126
W++
Sbjct: 122 WVVA 125
>gi|319406315|emb|CBI79952.1| SdhC succinate dehydrogenase cytochrome b-556 subunit [Bartonella
sp. AR 15-3]
Length = 133
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++ +RP SPHL +YR TM +SI HRITG V+Y G + W IA G T +
Sbjct: 4 TTTTKDRPRSPHLSVYRWSITMAISIAHRITGIVLYFGMCFLALWLVSIACGADTFKMVN 63
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMAKINIIASILTVL 120
LF YT A +HHM+G IR+++W+++ CL K+ AT A + S++ +
Sbjct: 64 QIYRSFPGLCLLFFYTLAGVHHMVGCIRHIVWNMNPRCLAKEKATSTAWATVFISLIVTI 123
Query: 121 IVWII 125
+WII
Sbjct: 124 AIWII 128
>gi|319899436|ref|YP_004159533.1| SdhC succinate dehydrogenase cytochrome b-556 subunit [Bartonella
clarridgeiae 73]
gi|319403404|emb|CBI76972.1| SdhC succinate dehydrogenase cytochrome b-556 subunit [Bartonella
clarridgeiae 73]
Length = 152
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++ +RP SPHL IYR TM +SI HRITG ++Y G + W IA G + +
Sbjct: 23 TTTTKDRPRSPHLSIYRWSITMAISIAHRITGVMLYFGMLFLALWLVSIACGANAFRMIN 82
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMAKINIIASILTVL 120
+ LF YT A +HHM+G IR+++W+++ CL K+ AT A + S++ +
Sbjct: 83 QIYESLPGLCLLFFYTLAGVHHMVGCIRHIVWNMNPCCLAKEKATSTAWATVFISLIVTI 142
Query: 121 IVWII 125
+WII
Sbjct: 143 AIWII 147
>gi|319409393|emb|CBI83037.1| SdhC succinate dehydrogenase cytochrome b-556 subunit [Bartonella
schoenbuchensis R1]
Length = 133
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+RP SPHL IYR TM +SI HRITG +Y G W IA G T ++ +
Sbjct: 8 KDRPYSPHLSIYRWSITMAMSIAHRITGVALYFGMICFAIWLGAIACGSDTFKTVN-GIY 66
Query: 66 GSVFEVC-LFLYTWAVIHHMLGGIRYLIWDVSLC-LDKKIATQMAKINIIASILTVLIVW 123
GS +C LFL+T A +HHM+G IR+L+W++ C L K+ AT A + +++ +W
Sbjct: 67 GSFPGLCVLFLFTLAGVHHMVGCIRHLVWNMKPCLLAKEKATATAWATVFITLIVTCAIW 126
Query: 124 II 125
+I
Sbjct: 127 VI 128
>gi|254292677|ref|YP_003058700.1| succinate dehydrogenase, cytochrome b556 subunit [Hirschia baltica
ATCC 49814]
gi|254041208|gb|ACT58003.1| succinate dehydrogenase, cytochrome b556 subunit [Hirschia baltica
ATCC 49814]
Length = 136
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 65/124 (52%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+ RPLSPHLQ+++ PTM SI+ RITG +G ++V W F IA+G +
Sbjct: 8 DKRPLSPHLQVWKFHPTMLTSILQRITGVGNAIGVVLIVGWLFAIASGSDVFKCFDVFFT 67
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
++ LF +T +V++H+ GIR+L WD +A + I +L + VWI
Sbjct: 68 SIFGKIILFGFTVSVMYHLGQGIRFLFWDAGKGFTPAVANFWSYFTIAFGLLGAVAVWIF 127
Query: 126 KDIV 129
+V
Sbjct: 128 AGLV 131
>gi|258541135|ref|YP_003186568.1| succinate dehydrogenase cytochrome b subunit [Acetobacter
pasteurianus IFO 3283-01]
gi|256632213|dbj|BAH98188.1| succinate dehydrogenase cytochrome b subunit [Acetobacter
pasteurianus IFO 3283-01]
gi|256635270|dbj|BAI01239.1| succinate dehydrogenase cytochrome b subunit [Acetobacter
pasteurianus IFO 3283-03]
gi|256638325|dbj|BAI04287.1| succinate dehydrogenase cytochrome b subunit [Acetobacter
pasteurianus IFO 3283-07]
gi|256641379|dbj|BAI07334.1| succinate dehydrogenase cytochrome b subunit [Acetobacter
pasteurianus IFO 3283-22]
gi|256644434|dbj|BAI10382.1| succinate dehydrogenase cytochrome b subunit [Acetobacter
pasteurianus IFO 3283-26]
gi|256647489|dbj|BAI13430.1| succinate dehydrogenase cytochrome b subunit [Acetobacter
pasteurianus IFO 3283-32]
gi|256650542|dbj|BAI16476.1| succinate dehydrogenase cytochrome b subunit [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256653533|dbj|BAI19460.1| succinate dehydrogenase cytochrome b subunit [Acetobacter
pasteurianus IFO 3283-12]
Length = 157
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RP+SPHLQ+YR +M +SI++RITG + G + VFW A G ++ R
Sbjct: 20 QRPMSPHLQVYRYRLSMVLSIMNRITGVIATAGATLGVFWLGAAAKGPKAFATARKVTGN 79
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA--KINIIASILTVLIVWI 124
+ ++ L + +VI+H +GGIR+LIWD DKK + + + A + TVL +
Sbjct: 80 PLGQLVLLGWLASVIYHTVGGIRHLIWDSGYRYDKKEVNKDGPVAVGVTAGVSTVLAAGL 139
Query: 125 I 125
+
Sbjct: 140 L 140
>gi|329114746|ref|ZP_08243503.1| Succinate dehydrogenase cytochrome b556 subunit [Acetobacter
pomorum DM001]
gi|326695877|gb|EGE47561.1| Succinate dehydrogenase cytochrome b556 subunit [Acetobacter
pomorum DM001]
Length = 157
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RP+SPHLQ+YR +M +SI++RITG + G + VFW A G ++ R
Sbjct: 20 QRPMSPHLQVYRYRLSMVLSIMNRITGVIATAGATLGVFWLGAAAKGPKAFATARKVTGN 79
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA--KINIIASILTVLIVWI 124
+ ++ L + +VI+H +GGIR+LIWD DKK + + + A + TVL +
Sbjct: 80 PLGQLVLVGWLASVIYHTVGGIRHLIWDSGYRYDKKEVNKDGPVAVGVTAGVSTVLAAGL 139
Query: 125 I 125
+
Sbjct: 140 L 140
>gi|300024743|ref|YP_003757354.1| succinate dehydrogenase, cytochrome b556 subunit [Hyphomicrobium
denitrificans ATCC 51888]
gi|299526564|gb|ADJ25033.1| succinate dehydrogenase, cytochrome b556 subunit [Hyphomicrobium
denitrificans ATCC 51888]
Length = 137
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
S + RPLSPHLQIY + M +SIVHRITG +Y+G+ ++ W A+G +
Sbjct: 8 SSRPERPLSPHLQIYSPLINMMMSIVHRITGVALYVGSLLLAVWLLAAASGPDYYDYVAG 67
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ ++ L YTWA++HH+LGG+R+ IWD D K ++ + S++ ++
Sbjct: 68 LLGSWPGKIVLLGYTWALMHHLLGGLRHFIWDTGRGYDLKTVDLLSWGTLAGSLVLTALI 127
Query: 123 WI 124
WI
Sbjct: 128 WI 129
>gi|316931809|ref|YP_004106791.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodopseudomonas
palustris DX-1]
gi|315599523|gb|ADU42058.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodopseudomonas
palustris DX-1]
Length = 132
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 70/124 (56%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ + RPLSPH+Q YR TM +SIVHR TG +Y GT ++ +W A G ++++
Sbjct: 2 TARIERPLSPHMQAYRWSLTMTMSIVHRATGIALYSGTLLLAWWLIACAAGPAAYANVQA 61
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + + +F YTWA++HH+L G+R+ +WD+ + +I I+ +++
Sbjct: 62 FTGSWIGRLIVFGYTWALMHHLLSGVRHFVWDLGYGFKTADREWLTWAALIGGIVLTVLL 121
Query: 123 WIIK 126
W+I
Sbjct: 122 WVIA 125
>gi|296445361|ref|ZP_06887319.1| succinate dehydrogenase, cytochrome b556 subunit [Methylosinus
trichosporium OB3b]
gi|296257122|gb|EFH04191.1| succinate dehydrogenase, cytochrome b556 subunit [Methylosinus
trichosporium OB3b]
Length = 136
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 69/121 (57%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RPLSPHL +Y+ I TM +SI HRI+G+ +Y G ++ + +A G S++
Sbjct: 11 LAAARPLSPHLSVYKPIITMAMSIAHRISGAALYAGAILLALYLLGLALGPSAFSTVAWI 70
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + LFL++WA+ HH+LGG+R+ IWD L LD +AK + + L +W
Sbjct: 71 ANSLIGRAFLFLFSWALFHHLLGGVRHAIWDRGLYLDGPGRELLAKATLGGGVALTLGLW 130
Query: 124 I 124
I
Sbjct: 131 I 131
>gi|319407790|emb|CBI81441.1| SdhC succinate dehydrogenase cytochrome b-556 subunit [Bartonella
sp. 1-1C]
Length = 152
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+RP SPHL +YR TM +SI HRITG V+Y G + W IA G + +
Sbjct: 27 KDRPRSPHLSVYRWSITMAISIAHRITGIVLYFGMCFLALWLVSIACGPDAFKMVN-KIY 85
Query: 66 GSVFEVC-LFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMAKINIIASILTVLIVW 123
GS +C LF YT A +HHM+G +R+++W+++ L K+ AT A + S++ + +W
Sbjct: 86 GSFLGLCLLFFYTLAGVHHMVGCVRHIVWNLNPRYLAKEKATLTAWATVFISLIVTIALW 145
Query: 124 II 125
II
Sbjct: 146 II 147
>gi|319404830|emb|CBI78431.1| SdhC succinate dehydrogenase cytochrome b-556 subunit [Bartonella
rochalimae ATCC BAA-1498]
Length = 152
Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 73/126 (57%), Gaps = 3/126 (2%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++ +RP SPHL +YR TM +SI HRITG V+Y G + W IA G T +
Sbjct: 23 TTTTKDRPRSPHLSVYRWSITMAISIAHRITGIVLYFGMCFLALWLVSIACGADTFKMVN 82
Query: 62 CYMDGSVFEVC-LFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMAKINIIASILTV 119
+ GS +C LF YT A +HH++G +R+++W+++ L K+ AT A + S++
Sbjct: 83 -KIYGSFPGLCFLFFYTLAGVHHIVGCVRHIVWNLNPRYLAKEKATSTAWATVFISLIVT 141
Query: 120 LIVWII 125
+ +W+I
Sbjct: 142 IALWVI 147
>gi|197103676|ref|YP_002129053.1| succinate dehydrogenase cytochrome b-556 subunit [Phenylobacterium
zucineum HLK1]
gi|196477096|gb|ACG76624.1| succinate dehydrogenase cytochrome b-556 subunit [Phenylobacterium
zucineum HLK1]
Length = 129
Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RP SPH I+R TM SI+HRITG +Y G + W +A G T ++ + M
Sbjct: 3 RERPTSPHTTIWRWHLTMATSILHRITGVALYGGALIAAAWALSLAGGPETYAAFKGVMG 62
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ ++ LF T A +H+ G+R+L WD+ D K A A I ++ L VW+I
Sbjct: 63 SFLGKLALFGLTLAGFYHLGNGVRHLTWDLGHGFDLKSANASAVGVIAFAVAATLAVWVI 122
Query: 126 KDIV 129
+
Sbjct: 123 AGMT 126
>gi|153868748|ref|ZP_01998495.1| Succinate dehydrogenase, cytochrome b subunit [Beggiatoa sp. PS]
gi|152074659|gb|EDN71493.1| Succinate dehydrogenase, cytochrome b subunit [Beggiatoa sp. PS]
Length = 130
Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 65/121 (53%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+PLSPHLQIY+ T +SI+HRITG + LGT V+V+W A G T + ++
Sbjct: 2 TKQPLSPHLQIYKPQLTSIMSILHRITGVFLSLGTLVLVYWLMAAAEGPETYQQAQNFLR 61
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
LF ++ A+ +H+ GIR+L WD L LD K + I + L ++ W++
Sbjct: 62 SWWGLFLLFGWSLALFYHLCNGIRHLFWDAGLGLDIKTVYITGSLVWIMTFLLTILTWVL 121
Query: 126 K 126
Sbjct: 122 A 122
>gi|114320488|ref|YP_742171.1| succinate dehydrogenase subunit C [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226882|gb|ABI56681.1| succinate dehydrogenase subunit C [Alkalilimnicola ehrlichii
MLHE-1]
Length = 130
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 67/110 (60%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+NRPLSPHLQ+Y+ T +SI HR +G V+ LG+ ++V+W +A G +++ +
Sbjct: 4 DNRPLSPHLQVYKPQLTSVLSICHRGSGVVLALGSIILVWWLSALAAGPEAFATVNGVVG 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ +V LFL+T A+ +H+ GIR+L+WD + + + + +IAS
Sbjct: 64 SFIGKVILFLFTLALFYHLCNGIRHLVWDTGRGFELESVYRSGYLVVIAS 113
>gi|254510339|ref|ZP_05122406.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacteraceae
bacterium KLH11]
gi|221534050|gb|EEE37038.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacteraceae
bacterium KLH11]
Length = 184
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 61/111 (54%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL IYR T SI+ RITG+ + L ++V+WF A + ++
Sbjct: 62 RGNRPLSPHLSIYRPQLTSVTSILTRITGNAMLLAALLIVWWFLAAATSPEAFARANWWL 121
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ ++ + L W + +H L GIR+LIWD + LD AT++ +I S
Sbjct: 122 TSILGDLVMALSLWGLWYHTLAGIRHLIWDNAYGLDIPTATKLGWAVVIGS 172
>gi|260431521|ref|ZP_05785492.1| succinate dehydrogenase, cytochrome b556 subunit [Silicibacter
lacuscaerulensis ITI-1157]
gi|260415349|gb|EEX08608.1| succinate dehydrogenase, cytochrome b556 subunit [Silicibacter
lacuscaerulensis ITI-1157]
Length = 128
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 67/121 (55%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL IYR T SI+ RITG+ + + ++V+WF A ++ +
Sbjct: 6 RGNRPLSPHLSIYRPQLTSVTSILTRITGNAMLVAALLIVWWFLAAATSPEAYATANAVI 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ ++ + L W + +H L GIR+LIWD ++ LD A ++ +I S++ L+ +
Sbjct: 66 TSLLGDLVMALSLWGLWYHTLAGIRHLIWDSAVGLDLPTAYKLGWAVVIGSVVLTLVTLL 125
Query: 125 I 125
I
Sbjct: 126 I 126
>gi|163734150|ref|ZP_02141591.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter
litoralis Och 149]
gi|161392686|gb|EDQ17014.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter
litoralis Och 149]
Length = 127
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL+IYR T SI+ RITG+ + + + +VV+WF A + + +
Sbjct: 6 RGNRPLSPHLRIYRPQLTSITSILTRITGNALLISSLLVVWWFLAAATSPESFAVANGVL 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS-ILTVLIV 122
+V + L W + +H L G+R+LIWD + LD + A +M I S +LT+L +
Sbjct: 66 TSWFGDVVMTLSLWGLWYHTLAGVRHLIWDQGIGLDIETAYKMGYAVIGGSFVLTLLTI 124
>gi|56695273|ref|YP_165621.1| succinate dehydrogenase, cytochrome b556 subunit [Ruegeria pomeroyi
DSS-3]
gi|56677010|gb|AAV93676.1| succinate dehydrogenase, cytochrome b556 subunit [Ruegeria pomeroyi
DSS-3]
Length = 128
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 61/113 (53%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL IYR T SI+ RITG+ + ++V+WF A + +
Sbjct: 6 RGNRPLSPHLSIYRPQLTSITSILTRITGNALLFAALLIVWWFLAAATSPEYFAVADGVI 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASIL 117
+ ++ + L W + +H L GIR+LIWD +L LD A ++ +I S+L
Sbjct: 66 TSLIGDLVMALSLWGLWYHTLAGIRHLIWDNALGLDLPTAEKLGWAVVIGSVL 118
>gi|304320539|ref|YP_003854182.1| succinate dehydrogenase cytochrome B-556 subunit [Parvularcula
bermudensis HTCC2503]
gi|303299441|gb|ADM09040.1| succinate dehydrogenase cytochrome B-556 subunit [Parvularcula
bermudensis HTCC2503]
Length = 142
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 72/121 (59%), Gaps = 2/121 (1%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+RPLSPHLQI+R TM SI+HR TG +Y G+ ++V W A E + ++
Sbjct: 17 GDRPLSPHLQIWRWSVTMATSILHRATGIALYAGSVLLVLWLLGGALTEGFYDGVTGFL- 75
Query: 66 GSVFEVCLFL-YTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
GS F + + + +TWA + H+ GI+YLIWD L +++A + A +IAS + +VW+
Sbjct: 76 GSPFGILILVGFTWAQMFHLSNGIKYLIWDSGRLLQREVAKKTAWGVLIASFVLTALVWL 135
Query: 125 I 125
+
Sbjct: 136 V 136
>gi|254487864|ref|ZP_05101069.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter sp.
GAI101]
gi|214044733|gb|EEB85371.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter sp.
GAI101]
Length = 127
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 65/121 (53%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL IYR T SI+ RITG+ + + ++V+WF A ++ ++
Sbjct: 6 RGNRPLSPHLTIYRPQLTSMTSILTRITGNAMLVAALLIVWWFLAAATSPEAFAAANGFI 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
++ +F + +H L GIR+LIWD LD + A ++ ++ S+L +I +
Sbjct: 66 TSWFGDLIMFFSLLGLWYHTLAGIRHLIWDNGYGLDIQTAEKLGWAALVGSVLLTIITAL 125
Query: 125 I 125
I
Sbjct: 126 I 126
>gi|254437963|ref|ZP_05051457.1| succinate dehydrogenase, cytochrome b556 subunit [Octadecabacter
antarcticus 307]
gi|198253409|gb|EDY77723.1| succinate dehydrogenase, cytochrome b556 subunit [Octadecabacter
antarcticus 307]
Length = 127
Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 65/113 (57%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
++ RPLSPHL IYR T SI R+TG+ + +G ++V+WF +A+G + +M
Sbjct: 6 RDKRPLSPHLTIYRPQWTSMTSIFTRLTGNALIVGALLIVWWFAALASGPEAYARANGFM 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASIL 117
++ +F A+ +H L G+R+LIWD LD + + + ++ I+ S+L
Sbjct: 66 TSWFGDLIMFGSVAALWYHSLAGVRHLIWDSGHMLDVQSSERAGQLIILVSVL 118
>gi|89068123|ref|ZP_01155540.1| succinate dehydrogenase, cytochrome b556 subunit [Oceanicola
granulosus HTCC2516]
gi|89046362|gb|EAR52419.1| succinate dehydrogenase, cytochrome b556 subunit [Oceanicola
granulosus HTCC2516]
Length = 127
Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 62/113 (54%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL ++R SI+ RITG+ + + ++V+WF +A G + ++
Sbjct: 6 RGNRPLSPHLTVWRWSLPAISSILTRITGNALIVAALMIVWWFVALATGPEAYARANGFI 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASIL 117
++ +FL AV +H+ G+R+LIWD LD + A +IAS+L
Sbjct: 66 TSWFGDLVMFLSVLAVWYHLFAGVRHLIWDQGYMLDVSSSETYATAAMIASVL 118
>gi|83944805|ref|ZP_00957171.1| succinate dehydrogenase, cytochrome b556 subunit [Oceanicaulis
alexandrii HTCC2633]
gi|83851587|gb|EAP89442.1| succinate dehydrogenase, cytochrome b556 subunit [Oceanicaulis
alexandrii HTCC2633]
Length = 134
Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+ RP+SPHL+I+R TM SI HR TG Y+G + W +A G M
Sbjct: 7 DPRPISPHLEIWRWHATMASSIFHRATGVGNYIGAIFLTLWLVLLAAGPDAYGGFEALMA 66
Query: 66 GSVFEVCLFLY---TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
G + + + T ++I+H++ G+R+L+WD + K A + IIASIL + +
Sbjct: 67 GPLGLLVKLVLFLFTLSLIYHLINGVRHLVWDAGKGFEPKFANTASMAIIIASILVTVAI 126
Query: 123 WIIKD 127
W++
Sbjct: 127 WLLSG 131
>gi|149184716|ref|ZP_01863034.1| hypothetical protein ED21_28398 [Erythrobacter sp. SD-21]
gi|148832036|gb|EDL50469.1| hypothetical protein ED21_28398 [Erythrobacter sp. SD-21]
Length = 126
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYL-GTPVVVFWFFCIANGEHTLSSLRCYMD 65
NRPLSPHLQI++ P M VSI+HR+TG + L G V ++W +A G + ++ M
Sbjct: 3 NRPLSPHLQIWKWGPHMLVSILHRVTGDGLALVGLGVFLWWLAAMAGGADSYATFAGIMG 62
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ V L +WA +HM+ GIR+ + D+ + + I+ + IL + W +
Sbjct: 63 SPIGMVVLIGLSWAFFNHMMSGIRHFVLDIGAGYELDTNKTWSVISPVLGILLTIAFWAV 122
>gi|218458002|ref|ZP_03498093.1| succinate dehydrogenase, cytochrome b556 subunit [Rhizobium etli
Kim 5]
Length = 90
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 44/56 (78%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M+++ NNRPLSPHLQIY+ IPTM +SIVHRITG +Y+GT +V +W A+G+ +
Sbjct: 16 MANVTNNRPLSPHLQIYKPIPTMVMSIVHRITGGALYVGTLLVAWWLIAAASGQAS 71
>gi|254477708|ref|ZP_05091094.1| succinate dehydrogenase, cytochrome b556 subunit [Ruegeria sp. R11]
gi|214031951|gb|EEB72786.1| succinate dehydrogenase, cytochrome b556 subunit [Ruegeria sp. R11]
Length = 127
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHLQIYR T SI R TG ++ + V+W A E + +
Sbjct: 6 RGNRPLSPHLQIYRPQLTSASSIFVRATGIAIFFLMLLAVWWLLAAATSEAAFGFIDGLL 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK-INIIASILTVL 120
G + ++ L TW++ + MLG +R++IWD CLD + + +M + + I A+ LTV
Sbjct: 66 RGWLGDIILLGATWSIWYLMLGRLRHVIWDFGHCLDVETSEKMGQGMFIAATALTVF 122
>gi|209883444|ref|YP_002287301.1| succinate dehydrogenase cytochrome b556 subunit [Oligotropha
carboxidovorans OM5]
gi|209871640|gb|ACI91436.1| succinate dehydrogenase cytochrome b556 subunit [Oligotropha
carboxidovorans OM5]
Length = 131
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RPLSP L YR TM +S++HR TG +Y GT ++ + A+ + +
Sbjct: 4 QTDRPLSPFLT-YRWTLTMAMSLIHRATGIALYGGTLLMAWGLIATASSPAAYACFEAFA 62
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ + +F +TW+++HH L G+RYL+WD M + +I +L + VW
Sbjct: 63 TSWIGRIAIFGFTWSLMHHALSGLRYLVWDTGHGYAPGPREGMTRGALIGGVLATIAVWA 122
Query: 125 IK 126
I
Sbjct: 123 IA 124
>gi|163738939|ref|ZP_02146352.1| succinate dehydrogenase, cytochrome b556 subunit [Phaeobacter
gallaeciensis BS107]
gi|163741817|ref|ZP_02149207.1| succinate dehydrogenase, cytochrome b556 subunit [Phaeobacter
gallaeciensis 2.10]
gi|161384990|gb|EDQ09369.1| succinate dehydrogenase, cytochrome b556 subunit [Phaeobacter
gallaeciensis 2.10]
gi|161387744|gb|EDQ12100.1| succinate dehydrogenase, cytochrome b556 subunit [Phaeobacter
gallaeciensis BS107]
Length = 127
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHLQ+YR T SI+ RITG+ + + ++ +WF A E + M
Sbjct: 6 RGNRPLSPHLQVYRPQITSITSILTRITGNALIVSALLIAWWFLAAATSEDYFRTANAVM 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS-ILTVL 120
++ + L + +H L G+R+LIWD LD + A ++ II S +LTVL
Sbjct: 66 TSWFGDIVMSLSVLGLWYHTLAGVRHLIWDNGKMLDLEPAQKLGWFVIIGSVVLTVL 122
>gi|114769286|ref|ZP_01446912.1| succinate dehydrogenase, cytochrome b556 subunit [alpha
proteobacterium HTCC2255]
gi|114550203|gb|EAU53084.1| succinate dehydrogenase, cytochrome b556 subunit [alpha
proteobacterium HTCC2255]
Length = 131
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K NRPLSPHL IYR + SI+ RITG + LG +++ W + + +
Sbjct: 5 VKGNRPLSPHLTIYRPQMSSISSILVRITGVSLALGFILIITWLLAASTNVYYFDCINSI 64
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS-ILTVLIV 122
+ + L WA+ +H LGGIR+LIWD+ D KIA ++ + II S +LT+ +V
Sbjct: 65 LTSWFGIIVLIGSVWALCYHSLGGIRHLIWDMGFGFDLKIADRLGWMVIIGSFVLTIFVV 124
Query: 123 W 123
+
Sbjct: 125 Y 125
>gi|209967178|ref|YP_002300093.1| succinate dehydrogenase, cytochrome b556, putative [Rhodospirillum
centenum SW]
gi|209960644|gb|ACJ01281.1| succinate dehydrogenase, cytochrome b556, putative [Rhodospirillum
centenum SW]
Length = 138
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 52/96 (54%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
RPLSPHLQ+YRL SI HR+TG + GT ++ +W A G ++++
Sbjct: 13 GRPRPLSPHLQVYRLPLPAIASITHRVTGVGLAAGTLLLAWWLIAAATGPEAFATVQAVA 72
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
+ +CL + WA +H + G+R+L+WD L+
Sbjct: 73 GSPLGLLCLLGWVWAFWYHAMNGVRHLLWDAGYGLE 108
>gi|259415023|ref|ZP_05738945.1| succinate dehydrogenase, cytochrome b556 subunit [Silicibacter sp.
TrichCH4B]
gi|259348933|gb|EEW60687.1| succinate dehydrogenase, cytochrome b556 subunit [Silicibacter sp.
TrichCH4B]
Length = 127
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTP-VVVFWFFCIANGEHTLSSLRCY 63
+ NRPLSPHL IYR T SI+ RITG + LG +VV+W A E + +
Sbjct: 6 RGNRPLSPHLTIYRPQLTSMSSIMVRITG-IAALGVALLVVWWLLAAATSESAFAFIDGL 64
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA-KINIIASILTVL 120
M + ++ + WA+ +HMLG +R+++WD CL+ + + ++ + I A++LTVL
Sbjct: 65 MRSWLGDLVMLGAAWAIFYHMLGRLRHVVWDFGYCLEVETSEKLGIGMFIGATVLTVL 122
>gi|89053302|ref|YP_508753.1| succinate dehydrogenase subunit C [Jannaschia sp. CCS1]
gi|88862851|gb|ABD53728.1| succinate dehydrogenase subunit C [Jannaschia sp. CCS1]
Length = 127
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL IY+ SI+ RITG+ + + +VV+W A+G +++ ++
Sbjct: 6 RGNRPLSPHLTIYKPQLNSITSILVRITGNAMLVSAVLVVWWLMAAASGPEYFATVDGWV 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS-ILTVL 120
+ ++ + L + +H LGG+R+LIWD LD + +M +I S +LTVL
Sbjct: 66 TSVLGDIVMSLSVLGLWYHALGGLRHLIWDAGYGLDADTSDKMGWGMLIGSVVLTVL 122
>gi|254503128|ref|ZP_05115279.1| succinate dehydrogenase, cytochrome b556 subunit [Labrenzia
alexandrii DFL-11]
gi|222439199|gb|EEE45878.1| succinate dehydrogenase, cytochrome b556 subunit [Labrenzia
alexandrii DFL-11]
Length = 108
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 60/103 (58%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M +SI+HRITG+ +Y GT ++ +W A G + + + LF +TWA++H
Sbjct: 1 MVMSILHRITGAALYFGTILLAWWLIAAAAGPAYFDFVNAIYGSIIGRLVLFGFTWALVH 60
Query: 83 HMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
HMLGGIR+ IWD+ +K +AK II S+ LI+WII
Sbjct: 61 HMLGGIRHFIWDMGAGFEKDAREWLAKATIIGSVSLTLILWII 103
>gi|83313049|ref|YP_423313.1| succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Magnetospirillum magneticum AMB-1]
gi|82947890|dbj|BAE52754.1| Succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Magnetospirillum magneticum AMB-1]
Length = 125
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 64/119 (53%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPH+Q+YR+ T +SI HRITG + +GT V+ +W A G + +
Sbjct: 4 RTRPLSPHIQVYRMPFTAILSISHRITGVALAVGTVVLAYWLASAAYGPVAYGHAQAVLG 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ ++ LF +T A+ +H+ GIR+L WD + A + ++ + A+ ++ WI
Sbjct: 64 SWLGKLVLFGWTAALFYHLCNGIRHLFWDKGRGYEIAEADKSGRMVVGAAAALTVLAWI 122
>gi|110678932|ref|YP_681939.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter
denitrificans OCh 114]
gi|109455048|gb|ABG31253.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter
denitrificans OCh 114]
Length = 127
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL IYR T SI+ RITG+ + + + +VV+WF A + +
Sbjct: 6 RGNRPLSPHLTIYRPQLTSMTSILTRITGNALLISSLLVVWWFLAAATSPEYFAVANGVL 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS-ILTVLIV 122
++ + L W + +H L G+R+LIWD + LD + A ++ I S +LT+L +
Sbjct: 66 TSWFGDLVMTLSLWGLWYHTLAGVRHLIWDQGIGLDIETAYKLGYAVIGGSFVLTLLTI 124
>gi|83943849|ref|ZP_00956306.1| succinate dehydrogenase, cytochrome b556 subunit [Sulfitobacter sp.
EE-36]
gi|83845096|gb|EAP82976.1| succinate dehydrogenase, cytochrome b556 subunit [Sulfitobacter sp.
EE-36]
Length = 127
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 63/121 (52%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL IYR T SI+ RITG+ + + ++V+WF A ++
Sbjct: 6 RGNRPLSPHLTIYRPQLTSMTSILTRITGNAMLVAALLIVWWFLAAATSAEYFDIANGFI 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
++ +FL + +H L GIR+LIWD LD A ++ +I S++ +I +
Sbjct: 66 TSWFGDLVMFLSLLGLWYHTLAGIRHLIWDNGYALDIPTAEKLGWAALIGSVVLTIITAL 125
Query: 125 I 125
I
Sbjct: 126 I 126
>gi|114798487|ref|YP_761916.1| succinate dehydrogenase, cytochrome b556 subunit [Hyphomonas
neptunium ATCC 15444]
gi|114738661|gb|ABI76786.1| succinate dehydrogenase, cytochrome b556 subunit [Hyphomonas
neptunium ATCC 15444]
Length = 132
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 1 MSSIKN--NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLS 58
MS K RPLSPH+QI+R + SI HRITG +Y+GT ++ W +A +
Sbjct: 1 MSGTKRAATRPLSPHIQIWRWHISALASITHRITGGALYVGTFLIAAWLVALAISPDAYA 60
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWD-VSLCLDKKIATQMAKINIIASIL 117
++ + ++ LFL+ A + H+ GIR+LIWD + K+A+Q++ + +IL
Sbjct: 61 AMEGIITSIPGKIVLFLWAVATLFHLYNGIRHLIWDGPGIGFSPKVASQVSTFIYVLAIL 120
Query: 118 T 118
+
Sbjct: 121 S 121
>gi|332559447|ref|ZP_08413769.1| succinate dehydrogenase cytochrome b556 subunit [Rhodobacter
sphaeroides WS8N]
gi|332277159|gb|EGJ22474.1| succinate dehydrogenase cytochrome b556 subunit [Rhodobacter
sphaeroides WS8N]
Length = 127
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 5/127 (3%)
Query: 1 MSSIKN-NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
M+ K RPLSPHLQIYR+ T SI R+TG+ + +GT +V +W A +
Sbjct: 1 MAETKRVERPLSPHLQIYRVQLTSTTSIFTRLTGNGLIVGTMLVTWWLLAAALSPEQFET 60
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKI----NIIAS 115
+ ++ L L WA+ +H L G+R+L WD L+ K A ++ +++ +
Sbjct: 61 ADWVLTSWFGDIVLLLSVWALWYHYLAGLRHLYWDTGKGLEIKTAEKLGMACIGGSLVPT 120
Query: 116 ILTVLIV 122
+LTV+I+
Sbjct: 121 LLTVIII 127
>gi|146276143|ref|YP_001166302.1| succinate dehydrogenase, cytochrome b subunit [Rhodobacter
sphaeroides ATCC 17025]
gi|145554384|gb|ABP68997.1| succinate dehydrogenase subunit C [Rhodobacter sphaeroides ATCC
17025]
Length = 127
Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 1 MSSIKN-NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
M+ K RPLSPHLQIYR+ T SI RITG+ + +GT +V +W A G ++
Sbjct: 1 MAETKRVERPLSPHLQIYRVQLTSTTSIFTRITGNGLIVGTMLVTWWLLAAALGPEQFAT 60
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ ++ L L WA+ +H L G+R+L WD L+ A ++
Sbjct: 61 ADAVLTSWFGDIVLLLSVWALWYHYLAGLRHLYWDTGKGLEITTAEKLG 109
>gi|307822158|ref|ZP_07652390.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacter
tundripaludum SV96]
gi|307736724|gb|EFO07569.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacter
tundripaludum SV96]
Length = 129
Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 68/120 (56%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+I NRP SPHLQ+Y+L T +SI HR+TG ++ G + V+ +A G + ++++
Sbjct: 2 AINTNRPTSPHLQVYKLPLTGIISITHRMTGIMLTAGLILFVYVISALAGGADSYTAMQA 61
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
M +F++ ++ + +A+ H+ G+R+LIWD + + A I + AS+ L+
Sbjct: 62 LMSLWLFKLVIWAFIYALFFHLCHGVRHLIWDSGSSFELDTLNRYAMIELAASLALTLMT 121
>gi|77464554|ref|YP_354058.1| succinate dehydrogenase subunit C [Rhodobacter sphaeroides 2.4.1]
gi|126463394|ref|YP_001044508.1| succinate dehydrogenase, cytochrome b subunit [Rhodobacter
sphaeroides ATCC 17029]
gi|221640465|ref|YP_002526727.1| Succinate dehydrogenase subunit C [Rhodobacter sphaeroides KD131]
gi|77388972|gb|ABA80157.1| succinate dehydrogenase subunit C [Rhodobacter sphaeroides 2.4.1]
gi|126105058|gb|ABN77736.1| succinate dehydrogenase subunit C [Rhodobacter sphaeroides ATCC
17029]
gi|221161246|gb|ACM02226.1| Succinate dehydrogenase subunit C [Rhodobacter sphaeroides KD131]
Length = 127
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 5/127 (3%)
Query: 1 MSSIKN-NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
M+ K RPLSPHLQIYR+ T SI R+TG+ + +GT +V +W A +
Sbjct: 1 MAETKRVERPLSPHLQIYRVQLTSTTSIFTRLTGNGLIVGTMLVTWWLLAAALSPEQFET 60
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKI----NIIAS 115
+ ++ L L WA+ +H L G+R+L WD L+ K A ++ +++ +
Sbjct: 61 ADWVLTSWFGDIVLLLSVWALWYHYLAGLRHLYWDTGKGLEIKTAEKLGMACIGGSLVLT 120
Query: 116 ILTVLIV 122
+LTV+I+
Sbjct: 121 LLTVIII 127
>gi|83953490|ref|ZP_00962212.1| succinate dehydrogenase, cytochrome b556 subunit [Sulfitobacter sp.
NAS-14.1]
gi|83842458|gb|EAP81626.1| succinate dehydrogenase, cytochrome b556 subunit [Sulfitobacter sp.
NAS-14.1]
Length = 127
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL IYR T SI+ RITG+ + + ++V+WF A ++
Sbjct: 6 RGNRPLSPHLTIYRPQLTSMTSILTRITGNAMLVAALLIVWWFLAAATSAEYFDIANGFI 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
++ +FL + +H L GIR+LIWD LD A ++ +I S+
Sbjct: 66 TSWFGDLVMFLSLLGLWYHTLAGIRHLIWDNGYALDIPTAEKLGWAALIGSV 117
>gi|148251845|ref|YP_001236430.1| succinate dehydrogenase subunit C [Bradyrhizobium sp. BTAi1]
gi|146404018|gb|ABQ32524.1| succinate dehydrogenase subunit C [Bradyrhizobium sp. BTAi1]
Length = 111
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 58/107 (54%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M +SIVHR TG +Y GT ++ +W A+G S ++ +M + + +F YTWA++H
Sbjct: 1 MILSIVHRATGVALYFGTLLLAWWLIAAASGPSAYSYVQGFMGSFLGRLIMFGYTWALLH 60
Query: 83 HMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDIV 129
H+L GIR+ +WD+ + +I I ++VWI+ V
Sbjct: 61 HLLSGIRHFVWDLGYGFKPNERETLTWGALIGGITLTVLVWIVAYAV 107
>gi|114764872|ref|ZP_01444054.1| Succinate dehydrogenase cytochrome b-556 subunit [Pelagibaca
bermudensis HTCC2601]
gi|114542758|gb|EAU45781.1| Succinate dehydrogenase cytochrome b-556 subunit [Roseovarius sp.
HTCC2601]
Length = 131
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 7/131 (5%)
Query: 1 MSSIKN-NRPLSPHL--QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL 57
M+ K RPLSP + Q YRL T S++ RITG+ + + T +V++W +A G
Sbjct: 1 MAEAKRIERPLSPFMFVQYYRLQLTAVTSVMIRITGNALMVATLLVIWWLLALAAGPEAF 60
Query: 58 SSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKI----NII 113
+ ++ V + +F WAV +H LGG+R+LI+D L+ + A ++ +++
Sbjct: 61 ETAEWWITSWVGNLVMFGSLWAVWYHYLGGLRHLIFDAGKGLELETAEKLGWACVYGSVV 120
Query: 114 ASILTVLIVWI 124
++LTV+I WI
Sbjct: 121 LTVLTVIIYWI 131
>gi|294085393|ref|YP_003552153.1| succinate dehydrogenase subunit C [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292664968|gb|ADE40069.1| succinate dehydrogenase subunit C [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 123
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RPLSPHLQIY+ T +SI HR TG V+ GT +V W +A GE + +
Sbjct: 1 MSKPRPLSPHLQIYKPQMTSVLSICHRATGVVLATGTGLVCLWLIALALGEDSFALATMI 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + + LF Y+ + +H GIR+L WD+ L+ +I + A+++ I W
Sbjct: 61 IQHPLGQFVLFGYSAVLFYHACNGIRHLAWDMGYGLEIPQVYATGRIVLAATVILTGIFW 120
Query: 124 II 125
+
Sbjct: 121 FL 122
>gi|163744267|ref|ZP_02151627.1| succinate dehydrogenase, cytochrome b556 subunit [Oceanibulbus
indolifex HEL-45]
gi|161381085|gb|EDQ05494.1| succinate dehydrogenase, cytochrome b556 subunit [Oceanibulbus
indolifex HEL-45]
Length = 127
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPH+ IYR T SI+ RITG+ + + ++V+WF A ++ M
Sbjct: 6 RGNRPLSPHMTIYRPQLTSMTSILTRITGNAMLITALLIVWWFLAAATSVEYFDTVNGIM 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS-ILTVLIVW 123
++ L + +H L GIR+LIWD LD A ++ +I S +LTVL V
Sbjct: 66 TSWFGDLVFTLSLLGLWYHTLAGIRHLIWDTGRMLDVPTAEKLGIAALIGSVVLTVLTVI 125
Query: 124 II 125
I+
Sbjct: 126 IV 127
>gi|157803312|ref|YP_001491861.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
canadensis str. McKiel]
gi|157784575|gb|ABV73076.1| Succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
canadensis str. McKiel]
Length = 124
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP+SPHL IY++ + +SI+HRITG ++ ++ +W + L
Sbjct: 6 QEIYNKRPISPHLSIYKMQISSTLSILHRITGVALFFAVSILAWWLILSKYDNNYLYLAS 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
CY + ++CL ++A +H+ GIRYL W + C K +I S L ++
Sbjct: 66 CY----IIKICLVAVSYAWFYHLCNGIRYLFWAIGYCFSIKAVNITGWCVVICSTLLTIL 121
Query: 122 VWI 124
+W+
Sbjct: 122 LWV 124
>gi|288957014|ref|YP_003447355.1| succinate dehydrogenase cytochrome b-556 subunit [Azospirillum sp.
B510]
gi|288909322|dbj|BAI70811.1| succinate dehydrogenase cytochrome b-556 subunit [Azospirillum sp.
B510]
Length = 142
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 72/121 (59%), Gaps = 2/121 (1%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+ RPLSPHLQ+Y+L T +SI HRITG + +GT ++V+W A G + + ++
Sbjct: 18 SGRPLSPHLQVYKLPLTAVMSITHRITGVGLAVGTLLLVWWLVAAAAGPEAFARAQGFI- 76
Query: 66 GSVFEVCL-FLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
GS F + L F ++ A+ +H+ GIR+L+WD + A + +I +IA+ ++ WI
Sbjct: 77 GSFFGLLLMFGWSAALYYHLCNGIRHLVWDAGKSFELTDADRNNRIVLIATAALTVLTWI 136
Query: 125 I 125
+
Sbjct: 137 V 137
>gi|159045407|ref|YP_001534201.1| putative succinate dehydrogenase cytochrome subunit B
[Dinoroseobacter shibae DFL 12]
gi|157913167|gb|ABV94600.1| putative succinate dehydrogenase cytochrome b subunit
[Dinoroseobacter shibae DFL 12]
Length = 127
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 9/123 (7%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RPLSPH+QIYR T SI+ RITG+ + +G + V+W A G + ++
Sbjct: 6 RGDRPLSPHIQIYRPQLTSVTSILTRITGNALLVGALLCVWWLIAAAAGPEYFA----FV 61
Query: 65 DG---SVFEVCLFLYT-WAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS-ILTV 119
DG S F +FL + WA+ +H L G+R+LIWD + K A + + I S +LTV
Sbjct: 62 DGLVTSWFGKLVFLGSIWALWYHTLAGVRHLIWDAGYGFELKDAYALGYMVIGGSVVLTV 121
Query: 120 LIV 122
+ V
Sbjct: 122 ITV 124
>gi|121996856|ref|YP_001001643.1| succinate dehydrogenase, cytochrome b subunit [Halorhodospira
halophila SL1]
gi|121588261|gb|ABM60841.1| succinate dehydrogenase subunit C [Halorhodospira halophila SL1]
Length = 129
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 64/120 (53%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
NRPLSPHL IYR T +S++HR TG V + ++V W +A G L +
Sbjct: 5 NRPLSPHLTIYRPQLTSLLSVLHRGTGVFVTMAAVLLVAWVMALAAGPEYYELLTQVLGH 64
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
+ ++ L T+++ +H+ GIR+L+WD + K + + + AS+L +VW+I
Sbjct: 65 WLGQLVLLGITFSLAYHLCNGIRHLVWDTVRAFELKAVYRGGYMVLAASVLLTALVWVIA 124
>gi|114571387|ref|YP_758067.1| succinate dehydrogenase, cytochrome b subunit [Maricaulis maris
MCS10]
gi|114341849|gb|ABI67129.1| succinate dehydrogenase, cytochrome b subunit [Maricaulis maris
MCS10]
Length = 130
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-EHTLSSL 60
S + RP+SPHLQ++R TM SI+HR TG Y+G + W +A G E ++S L
Sbjct: 3 SDWSDPRPMSPHLQVWRWHATMASSILHRATGVANYIGAVAISVWVVLLAFGAEGSISFL 62
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
V L T++V +H L G+R+L+WD D K + + + I +++
Sbjct: 63 FEGWMAWVTRFGLIALTYSVSYHWLNGLRHLLWDAGKGYDPKGSNLRSILIIFGAVIPTA 122
Query: 121 IVWI 124
++W+
Sbjct: 123 LIWL 126
>gi|84684219|ref|ZP_01012121.1| Succinate dehydrogenase cytochrome b-556 subunit [Maritimibacter
alkaliphilus HTCC2654]
gi|84667972|gb|EAQ14440.1| Succinate dehydrogenase cytochrome b-556 subunit [Rhodobacterales
bacterium HTCC2654]
Length = 127
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 55/108 (50%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHLQ YRL +SI+HRITG + ++V++F +A G + +
Sbjct: 6 QGNRPLSPHLQAYRLPLNAKLSILHRITGVAMGFSGVLIVWYFLALATGPEYFETASAVL 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINI 112
++ FL A+ H G+R+LIWD +K + A I I
Sbjct: 66 TSWFGDIVFFLSICALWLHFANGVRHLIWDTGSHFGQKTVNRSALIGI 113
>gi|254465461|ref|ZP_05078872.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacterales
bacterium Y4I]
gi|206686369|gb|EDZ46851.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacterales
bacterium Y4I]
Length = 127
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHLQ+YR T SI+ RITG+ + + ++ +WF A ++ +
Sbjct: 6 RGNRPLSPHLQVYRPQLTSVTSILTRITGNALIVSALLIAWWFLAAATSADYFATANGLL 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA-KINIIASILTVL 120
++ + L + +H L GIR+LIWD L+ + A ++ + I +++LTVL
Sbjct: 66 TSWFGDLVMTLSVLGLWYHTLAGIRHLIWDNGYMLELEQAEKLGWGVVIGSAVLTVL 122
>gi|85374260|ref|YP_458322.1| hypothetical protein ELI_07165 [Erythrobacter litoralis HTCC2594]
gi|84787343|gb|ABC63525.1| hypothetical protein ELI_07165 [Erythrobacter litoralis HTCC2594]
Length = 126
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYL-GTPVVVFWFFCIANGEHTLSSLRCYMD 65
NRPLSPHLQI++ P M VSI+HRITG + L G V+++W +A+G +
Sbjct: 3 NRPLSPHLQIWKWGPHMLVSILHRITGDGMALVGLGVLLWWLGALASGPEAYETFSTLAT 62
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ V L +WA H++ G+R+ + D+ + + ++ + +L + W +
Sbjct: 63 TPIGYVVLVGLSWAFFTHLMSGLRHFVLDIGAGYELDTNKMWSIVSPVLGVLLTVAFWAV 122
>gi|84515883|ref|ZP_01003244.1| succinate dehydrogenase, cytochrome b556 subunit [Loktanella
vestfoldensis SKA53]
gi|84510325|gb|EAQ06781.1| succinate dehydrogenase, cytochrome b556 subunit [Loktanella
vestfoldensis SKA53]
Length = 127
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 72/131 (54%), Gaps = 22/131 (16%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWF---------FCIANGEH 55
+ NRPLSPHL IYR T SI+ RITG+ + + ++V+WF F +A+G
Sbjct: 6 RGNRPLSPHLTIYRPQWTSITSILVRITGNALLVAGLLIVWWFVAAATGPAAFALADGVL 65
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD----KKIATQMAKIN 111
T + M GS+ WA+ +H LGG+R+L+WD LD ++ M ++
Sbjct: 66 TSWFGKLVMLGSI---------WALWYHSLGGLRHLVWDSGRMLDVASSERAGQAMVALS 116
Query: 112 IIASILTVLIV 122
++ +I+TV+I+
Sbjct: 117 VVLTIITVIIL 127
>gi|85706758|ref|ZP_01037850.1| Succinate dehydrogenase cytochrome b-556 subunit [Roseovarius sp.
217]
gi|85668816|gb|EAQ23685.1| Succinate dehydrogenase cytochrome b-556 subunit [Roseovarius sp.
217]
Length = 127
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Query: 1 MSSIKN-NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
M+ K RPLSPHLQIYR T SI+ RITG+ + + ++V+W + ++ +
Sbjct: 1 MAETKQVERPLSPHLQIYRPQLTSITSILTRITGNALVVAAALIVWWLLAASTSDNYFAM 60
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ ++ L L WAV +H L G+R+L +D +D A ++ II S+
Sbjct: 61 ADAVLTSWFGDLVLTLSLWAVWYHYLAGLRHLYFDAGKGMDIPTAEKLGWACIIGSV 117
>gi|149913137|ref|ZP_01901671.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter sp.
AzwK-3b]
gi|149813543|gb|EDM73369.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter sp.
AzwK-3b]
Length = 127
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RPLSPHLQ+YR T SI+ RITG+ + +G ++V+W A G + +
Sbjct: 6 RGERPLSPHLQVYRPQMTSISSILTRITGNALIVGVLLIVWWLLAAATGPDYFAIADAVV 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA----KINIIASILTVL 120
++ L L WA+ +H L G+R+L +D L+ + + ++ ++I +++T+L
Sbjct: 66 TSWFGDLVLTLSLWAIWYHYLAGLRHLYYDAGKGLEIETSEKLGWACIGGSVILTVITLL 125
Query: 121 IV 122
I+
Sbjct: 126 II 127
>gi|67459555|ref|YP_247179.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia felis
URRWXCal2]
gi|75536045|sp|Q4UKC1|DHSC_RICFE RecName: Full=Succinate dehydrogenase cytochrome b556 subunit;
Short=Cytochrome b-556
gi|67005088|gb|AAY62014.1| Succinate dehydrogenase cytochrome b-556 subunit [Rickettsia felis
URRWXCal2]
Length = 124
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP SPHL IY+L + +SI+HR+TG ++ ++ +W + L
Sbjct: 6 QEIYNKRPTSPHLSIYKLQISSTLSILHRMTGVALFFAVSILAWWLILSKYDNNYLQFAN 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
C + ++CL ++A +H+ GIR+L WD+ K ++ SIL ++
Sbjct: 66 C----CIIKICLVAVSYAWFYHLCNGIRHLFWDIGYGFSIKAVNITGWCVVVCSILLTML 121
Query: 122 VWI 124
+W+
Sbjct: 122 LWV 124
>gi|126725053|ref|ZP_01740896.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacterales
bacterium HTCC2150]
gi|126706217|gb|EBA05307.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacterales
bacterium HTCC2150]
Length = 139
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RPLSPHL IYR T SI RITG+ + L ++V+W A G R +
Sbjct: 18 RGKRPLSPHLTIYRPQLTSMTSIFTRITGNAMLLAALMIVWWLLAAATGPGYYDLARTVI 77
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS-ILTVL 120
+ + L WA+ +H G+R+L WD + K A ++ + I S ILTVL
Sbjct: 78 TSWFGSLIMILSLWALWYHFCAGLRHLYWDTGRGFEIKQAERLGIMVIAGSFILTVL 134
>gi|315497255|ref|YP_004086059.1| succinate dehydrogenase, cytochrome b556 subunit [Asticcacaulis
excentricus CB 48]
gi|315415267|gb|ADU11908.1| succinate dehydrogenase, cytochrome b556 subunit [Asticcacaulis
excentricus CB 48]
Length = 143
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 7/130 (5%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLS 58
S+ RPLSPHLQ+++ TMF SI+HR TG +G +V W I A+G H
Sbjct: 6 STEAAYRPLSPHLQVWKFHITMFTSILHRATGIASVVGAVMVAAWLLAIGLTASG-HCPE 64
Query: 59 SLRCYMDGSVFEVCLFLY---TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ ++ + LF++ T A H+ GG+R+LIWD+ L A +A +++
Sbjct: 65 AYTLFLSFAASPFGLFVWFGLTLAGFIHLTGGLRHLIWDMGLGFKISSANALAWWSLLGG 124
Query: 116 ILTVLIVWII 125
I L W +
Sbjct: 125 IALTLAFWAV 134
>gi|157825304|ref|YP_001493024.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia akari
str. Hartford]
gi|157799262|gb|ABV74516.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia akari
str. Hartford]
Length = 124
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP+SPHL IY+ + +SI+HRITG ++ ++V+W + L +
Sbjct: 6 QEIYNKRPISPHLTIYKPQISSTLSILHRITGVALFFAVSILVWWLILSKYDNNYLQFAK 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
C + ++CL +++ +H+ GIR+L WD+ K ++ S+L ++
Sbjct: 66 C----CIIKICLVAVSYSWFYHLCNGIRHLFWDIGYGFSIKAVNITGWCVVVGSLLLTML 121
Query: 122 VWI 124
+W+
Sbjct: 122 LWV 124
>gi|51473326|ref|YP_067083.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia typhi
str. Wilmington]
gi|81390260|sp|Q68XP1|DHSC_RICTY RecName: Full=Succinate dehydrogenase cytochrome b556 subunit;
Short=Cytochrome b-556
gi|51459638|gb|AAU03601.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia typhi
str. Wilmington]
Length = 124
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP SPHL IY+ + +SI+HR+TG ++ ++V+W + L R
Sbjct: 6 QEIYNKRPTSPHLTIYKPQISSTLSILHRMTGVALFFVVSILVWWLILSKYDNNYLQLAR 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
C + ++CL +++A +H+ GIR+L WD+ + ++ SIL ++
Sbjct: 66 C----CIIKICLVAFSYAWCYHLCNGIRHLFWDIGYGFSIRAVNITGWCVVVCSILLTML 121
Query: 122 VWI 124
+W+
Sbjct: 122 LWV 124
>gi|332188523|ref|ZP_08390243.1| succinate dehydrogenase, cytochrome b556 subunit [Sphingomonas sp.
S17]
gi|332011428|gb|EGI53513.1| succinate dehydrogenase, cytochrome b556 subunit [Sphingomonas sp.
S17]
Length = 161
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 21/138 (15%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGS-VVYLGTPVVVFWFFCIANGEHTLSS 59
+++ RPLSPHLQI++ P M VSI+HR TG+ + +G ++V++ IA G + ++
Sbjct: 26 LAARNTARPLSPHLQIWKWGPNMLVSILHRATGTGMATVGAALLVWFLAAIAGGPESYAT 85
Query: 60 LR-------------CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQ 106
R Y+ G CLF H+ GIR+L DV + K +
Sbjct: 86 FRDVFTVQSGRLNIIGYVVGIGLTACLF-------QHLANGIRHLFMDVGAGFELKSNKR 138
Query: 107 MAKINIIASILTVLIVWI 124
A+ I+ +++ + W+
Sbjct: 139 QAQATIVFAVVMTVAFWL 156
>gi|149201370|ref|ZP_01878345.1| Succinate dehydrogenase cytochrome b-556 subunit [Roseovarius sp.
TM1035]
gi|149145703|gb|EDM33729.1| Succinate dehydrogenase cytochrome b-556 subunit [Roseovarius sp.
TM1035]
Length = 127
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 60/115 (52%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RPLSPHLQIYR T SI+ RITG+ + + ++V+W + + + +
Sbjct: 8 ERPLSPHLQIYRPQLTSITSILTRITGNALIVAALLIVWWLLAASTSDAYFAMADAVLTS 67
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
++ L L WAV +H L G+R+L +D +D A ++ II S++ +I
Sbjct: 68 WFGDLVLSLSAWAVWYHYLAGLRHLYFDAGKGMDIPTAEKLGWGCIIGSVVLTVI 122
>gi|126734839|ref|ZP_01750585.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter sp.
CCS2]
gi|126715394|gb|EBA12259.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter sp.
CCS2]
Length = 127
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 71/122 (58%), Gaps = 4/122 (3%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL IYR T SI+ RITG+ + + ++V+WF A G ++ ++
Sbjct: 6 RGNRPLSPHLTIYRPQWTSMSSILVRITGNALIVAALMIVWWFVAAAAGPDAFATANGFV 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD---KKIATQMAKI-NIIASILTVL 120
++ + L + +H+LGG+R+L+WD LD ++A QM + +++ +I T++
Sbjct: 66 TSWFGDLIMTLSVLGLWYHLLGGLRHLVWDSGRMLDVDKSELAAQMMVVLSVLLTIFTIV 125
Query: 121 IV 122
+V
Sbjct: 126 VV 127
>gi|299133110|ref|ZP_07026305.1| succinate dehydrogenase, cytochrome b556 subunit [Afipia sp. 1NLS2]
gi|298593247|gb|EFI53447.1| succinate dehydrogenase, cytochrome b556 subunit [Afipia sp. 1NLS2]
Length = 111
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 55/102 (53%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M +SI+HRITG +Y GT ++ +W A+G + L+ + + + +TW+++H
Sbjct: 1 MIMSIIHRITGLALYAGTLLLAWWLIATASGPAAYACLQSFTASWIGRLIEIGFTWSLLH 60
Query: 83 HMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
H G+RYL+WD + ++ + +IA ++ +WI
Sbjct: 61 HAFSGLRYLVWDTGHGFGVEARERLTQAALIAGVVATAALWI 102
>gi|144898837|emb|CAM75701.1| succinate dehydrogenase cytochrome b556 subunit [Magnetospirillum
gryphiswaldense MSR-1]
Length = 138
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
NRPLSPHL +YRL +SI HRITG + +G + +W A+G + +
Sbjct: 16 RNRPLSPHLDVYRLPLLAIMSITHRITGVGLAIGMFALAWWLCAAASGPAEFAVAQAVFG 75
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ ++ LF +T A+ H+ GIR+L+WD + A AK+ + A+++ +I WII
Sbjct: 76 SFLGKLFLFGWTVALFFHLSHGIRHLLWDSGWGFEIPQAYLSAKVALGATVVLTVIAWII 135
>gi|285018596|ref|YP_003376307.1| succinate dehydrogenase_cytochrome b subunit protein [Xanthomonas
albilineans GPE PC73]
gi|283473814|emb|CBA16316.1| putative succinate dehydrogenase_cytochrome b subunit protein
[Xanthomonas albilineans]
Length = 130
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 62/119 (52%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YR M SIVHR TG V+ G ++V + G+ + R
Sbjct: 4 RERPLSPHLQVYRWQIQMVTSIVHRATGIVLAFGALLIVAALLLLMCGQASWDCFRALAG 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+V LF ++WA +H+ G+R+++ D + + +++I S++ V ++W+
Sbjct: 64 AWYGQVFLFAWSWAFAYHLCNGLRHIVQDFGHGFSIPAFLRSSWLSVIGSLVIVALIWV 122
>gi|194365313|ref|YP_002027923.1| succinate dehydrogenase, cytochrome b556 subunit [Stenotrophomonas
maltophilia R551-3]
gi|194348117|gb|ACF51240.1| succinate dehydrogenase, cytochrome b556 subunit [Stenotrophomonas
maltophilia R551-3]
Length = 130
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 61/118 (51%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YR M SI+HR TG + +G ++ + G + + +
Sbjct: 4 RQRPLSPHLQVYRWQIQMATSILHRATGVFLSVGALIIAAGLLALMMGPDSWNCFTGHAG 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
V LF +TW+ +H+ GIR+++ D ++ + + +++I S++ L+VW
Sbjct: 64 AWYGRVFLFAWTWSFAYHLCNGIRHVVQDFAIGFSIPAFIRSSWLSVIGSLVITLLVW 121
>gi|87199761|ref|YP_497018.1| succinate dehydrogenase subunit C [Novosphingobium aromaticivorans
DSM 12444]
gi|87135442|gb|ABD26184.1| succinate dehydrogenase subunit C [Novosphingobium aromaticivorans
DSM 12444]
Length = 141
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 18/138 (13%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFF-CIANGEHTLSS 59
M+ + RP+SPHLQI+R P M VSI+HRITG+ + ++ W+ +A+G S
Sbjct: 1 MAQARKARPISPHLQIWRWGPAMLVSILHRITGNGLAFAGLGLLLWWVGALASGPE---S 57
Query: 60 LRCYMD----GS----------VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIAT 105
+ ++D GS + ++ L +WA H GIR+LI D+ +
Sbjct: 58 YQTFLDWVWVGSAGGIQAVTAILGKIVLVGLSWAFFQHAASGIRHLILDIGAGYELDANA 117
Query: 106 QMAKINIIASILTVLIVW 123
+ + + I+ S+L + W
Sbjct: 118 RWSSLTIVISVLLTIAFW 135
>gi|157964193|ref|YP_001499017.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
massiliae MTU5]
gi|157843969|gb|ABV84470.1| Succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
massiliae MTU5]
Length = 124
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP SPHL IY+ + +SI+HR+TG ++ ++V+W + L
Sbjct: 6 QEIYNKRPTSPHLTIYKPQISSTLSILHRMTGVALFFVVSILVWWLILSKYDNNYLQLAE 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
C + ++CL ++A +H+ GIR+L WD+ K+ ++ S+L ++
Sbjct: 66 C----CIIKICLVAVSYAWFYHLCNGIRHLFWDIGYGFSIKLVNITGWCVVVGSVLLTVL 121
Query: 122 VWI 124
+W+
Sbjct: 122 LWV 124
>gi|239947122|ref|ZP_04698875.1| succinate dehydrogenase, cytochrome b556 subunit [Rickettsia
endosymbiont of Ixodes scapularis]
gi|239921398|gb|EER21422.1| succinate dehydrogenase, cytochrome b556 subunit [Rickettsia
endosymbiont of Ixodes scapularis]
Length = 124
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP SPHL IY+ + +SI+HR+TG ++ ++ +W + L
Sbjct: 6 QEIYNKRPTSPHLTIYKPQISSTLSILHRMTGVALFFAVSILAWWLILSKYDNNYLQLAN 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
C + ++CL ++A +H+ GIR+L WD+ K ++ SIL ++
Sbjct: 66 C----CIIKICLVAASYAWFYHLCNGIRHLFWDIGYGFSIKAVNITGWCVVVCSILLTML 121
Query: 122 VWI 124
+W+
Sbjct: 122 LWV 124
>gi|86138977|ref|ZP_01057548.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter sp.
MED193]
gi|85824208|gb|EAQ44412.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter sp.
MED193]
Length = 127
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL IYR T SI+ RITG+ + + ++V+W A ++ M
Sbjct: 6 RGNRPLSPHLSIYRPQMTSLSSILTRITGNALIISVMLIVWWLLAAATSPAYFATANGVM 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
++ L L T + +H L G+R+L +D LD + A ++ +I S
Sbjct: 66 TSWFGDIVLALSTLGIWYHFLAGLRHLYFDAGHGLDIETAEKLGWGMMIGS 116
>gi|15892091|ref|NP_359805.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
conorii str. Malish 7]
gi|229586366|ref|YP_002844867.1| Succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
africae ESF-5]
gi|21362479|sp|Q92J99|DHSC_RICCN RecName: Full=Succinate dehydrogenase cytochrome b556 subunit;
Short=Cytochrome b-556
gi|15619214|gb|AAL02706.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
conorii str. Malish 7]
gi|228021416|gb|ACP53124.1| Succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
africae ESF-5]
Length = 124
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP SPHL IY+ + +SI++R+TG ++ ++V+W + L
Sbjct: 6 QEIYNKRPTSPHLTIYKPQISSTLSILYRMTGVALFFAVSILVWWLILSKYDNNYLQLAE 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
C + ++CL ++A +H+ GIR+L WD+ K+ ++ S+L ++
Sbjct: 66 C----CIIKICLVAVSYAWFYHLCNGIRHLFWDIGYGFSIKLVNITGWCVVVGSVLLTVL 121
Query: 122 VWI 124
+W+
Sbjct: 122 LWV 124
>gi|34580878|ref|ZP_00142358.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
sibirica 246]
gi|28262263|gb|EAA25767.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
sibirica 246]
Length = 124
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP SPHL IY+ + +SI++R+TG ++ ++V+W + L
Sbjct: 6 QEIYNKRPTSPHLTIYKPQISSTLSILYRMTGVALFFAVSILVWWLILSQYDNNYLQLAE 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
C + ++CL ++A +H+ GIR+L WD+ K+ ++ S+L ++
Sbjct: 66 C----CIIKICLVAVSYAWFYHLCNGIRHLFWDIGYGFSIKLVNITGWCVVVGSVLLTVL 121
Query: 122 VWI 124
+W+
Sbjct: 122 LWV 124
>gi|190573776|ref|YP_001971621.1| putative succinate dehydrogenase cytochrome b-556 subunit
[Stenotrophomonas maltophilia K279a]
gi|190011698|emb|CAQ45317.1| putative succinate dehydrogenase cytochrome b-556 subunit
[Stenotrophomonas maltophilia K279a]
Length = 130
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 60/118 (50%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YR M SI+HR TG + +G ++ + G + + +
Sbjct: 4 RQRPLSPHLQVYRWQIQMATSILHRATGVFLSVGALIIAAGLLALMMGPESWNCFTGHAG 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
V LF +TW+ +H+ GIR+++ D ++ + + +++ S++ L+VW
Sbjct: 64 AWYGRVFLFAWTWSFAYHLCNGIRHVVQDFAIGFSIPAFIRSSWLSVTGSLVITLLVW 121
>gi|15604003|ref|NP_220518.1| succinate dehydrogenase cytochrome B560 subunit (sdhC) [Rickettsia
prowazekii str. Madrid E]
gi|729336|sp|P41085|DHSC_RICPR RecName: Full=Succinate dehydrogenase cytochrome b556 subunit;
Short=Cytochrome b-556
gi|409934|gb|AAA18325.1| putative hydrophobic subunit of succinate dehydrogenase [Rickettsia
prowazekii]
gi|3860694|emb|CAA14595.1| SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT (sdhC) [Rickettsia
prowazekii]
gi|292571719|gb|ADE29634.1| Succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
prowazekii Rp22]
Length = 124
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP SPHL IY+ + +SI+HR+TG ++ ++V+W + L
Sbjct: 6 QEIYNKRPTSPHLTIYKPQISSTLSILHRMTGVALFFVVSILVWWLILSKYDNNYLQLAS 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
C + ++CL ++++ +H+ GIR+L WD+ K ++ SIL ++
Sbjct: 66 C----CIIKICLVAFSYSWCYHLCNGIRHLFWDIGYGFSIKAVNITGWCVVVCSILLTML 121
Query: 122 VWI 124
+W+
Sbjct: 122 LWV 124
>gi|84500178|ref|ZP_00998444.1| succinate dehydrogenase, cytochrome b556 subunit [Oceanicola
batsensis HTCC2597]
gi|84392112|gb|EAQ04380.1| succinate dehydrogenase, cytochrome b556 subunit [Oceanicola
batsensis HTCC2597]
Length = 129
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 6/124 (4%)
Query: 5 KNNRPLSPHL--QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ NRPLSP + Q YR SI+ RITG+ + + ++ +WF A G
Sbjct: 6 RGNRPLSPFMLGQYYRFQLNSVASILTRITGNALIVAAFLIAWWFMAAAAGPEYFRVADY 65
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKI----NIIASILT 118
+ V ++ L T + +H L G+R+LIWD LD + + +M+ I +++ ++LT
Sbjct: 66 VITSWVGDLILLFSTLGLWYHTLAGVRHLIWDNGYLLDMESSDKMSWIIIGGSVVLTLLT 125
Query: 119 VLIV 122
V+IV
Sbjct: 126 VIIV 129
>gi|157828041|ref|YP_001494283.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
rickettsii str. 'Sheila Smith']
gi|165932739|ref|YP_001649528.1| succinate dehydrogenase cytochrome b556 subunit [Rickettsia
rickettsii str. Iowa]
gi|157800522|gb|ABV75775.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
rickettsii str. 'Sheila Smith']
gi|165907826|gb|ABY72122.1| succinate dehydrogenase cytochrome b556 subunit [Rickettsia
rickettsii str. Iowa]
Length = 124
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP SPHL IY+ + +SI++R+TG ++ ++V+W + L
Sbjct: 6 QEIYNKRPTSPHLTIYKPQISSTLSILYRMTGVALFFAVSILVWWLILSKYDNNYLQLAE 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
C + ++CL ++A +H+ GIR+L WD+ K+ ++ S+L ++
Sbjct: 66 C----CIIKICLVAVSYAWFYHLCNGIRHLFWDIGYGFSIKLVNITGWCVVLGSVLLTVL 121
Query: 122 VWI 124
+W+
Sbjct: 122 LWV 124
>gi|53804146|ref|YP_114003.1| succinate dehydrogenase, cytochrome b556 subunit [Methylococcus
capsulatus str. Bath]
gi|53757907|gb|AAU92198.1| putative succinate dehydrogenase, cytochrome b556 subunit
[Methylococcus capsulatus str. Bath]
Length = 138
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 52/97 (53%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YRL T +SI HRITG ++ +G +V + G + + ++
Sbjct: 14 RERPLSPHLQVYRLPVTALLSISHRITGVLLGIGLIGLVLVLMSVVQGPSAYAPVHAFLS 73
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
G L+++ A++ H+ GIR+L+WD +
Sbjct: 74 GIAGRSLLWIWITALLFHLSHGIRHLVWDTGHGFSRD 110
>gi|126730329|ref|ZP_01746140.1| succinate dehydrogenase, cytochrome b556 subunit [Sagittula
stellata E-37]
gi|126709062|gb|EBA08117.1| succinate dehydrogenase, cytochrome b556 subunit [Sagittula
stellata E-37]
Length = 131
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 5 KNNRPLSPHL--QIYRLIPTMFVSIVHRITGSVVYLGTP-VVVFWFFCIANGEHTLSSLR 61
+ NRPLSP + Q YR T SI+ RITG + LGT ++V W C A + +
Sbjct: 8 RGNRPLSPFMIGQYYRPQMTSISSIMVRITG-IASLGTAALLVLWLLCAATSPDAYAVVN 66
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINII-ASILTV 119
+ + +V + L +WA+ +HMLG +R++IWD+ ++ + + M I I AS++ +
Sbjct: 67 GILTSFIGDVLMLLASWAIWYHMLGRLRHVIWDLGYMVEIEPSEMMGWIMFIGASVMAI 125
>gi|99078501|ref|YP_611759.1| succinate dehydrogenase subunit C [Ruegeria sp. TM1040]
gi|99035639|gb|ABF62497.1| succinate dehydrogenase subunit C [Ruegeria sp. TM1040]
Length = 127
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RPLSPHL IYR T SI+ RITG +VV+W A E + + +
Sbjct: 6 RGKRPLSPHLTIYRPQLTSMSSIMVRITGIAALAVALLVVWWLLAAATSESAFAFIDGLL 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA-KINIIASILTVLIVW 123
+ ++ + L WA+ +HMLG +R+++WD CL+ + + ++ + I A++LTVL
Sbjct: 66 RSWLGDIVMLLAAWAIFYHMLGRLRHVVWDFGYCLEVETSEKLGVGMFIGATVLTVLAAL 125
Query: 124 II 125
++
Sbjct: 126 VV 127
>gi|262277891|ref|ZP_06055684.1| succinate dehydrogenase, cytochrome b556 subunit [alpha
proteobacterium HIMB114]
gi|262224994|gb|EEY75453.1| succinate dehydrogenase, cytochrome b556 subunit [alpha
proteobacterium HIMB114]
Length = 122
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K PLSPHLQ+Y+ + +SI HR+T +G W F + GE +
Sbjct: 1 MKFESPLSPHLQVYKWQLSSLLSITHRMTSIFNLMGMMFFALWIFMLFLGEDVYKYFEIF 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + W+ +H+L GIR+L WD+ + K A +++S + +VW
Sbjct: 61 SATVIGKFIFVGIIWSFSYHLLNGIRHLFWDMGYGYEIKTANLSGIFVLLSSFILTFLVW 120
Query: 124 II 125
+
Sbjct: 121 VF 122
>gi|91762626|ref|ZP_01264591.1| Succinate dehydrogenase cytochrome b [Candidatus Pelagibacter
ubique HTCC1002]
gi|91718428|gb|EAS85078.1| Succinate dehydrogenase cytochrome b [Candidatus Pelagibacter
ubique HTCC1002]
Length = 127
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ NN PLSPH+QIYR + VSI HRITG V V+ W F + GE + + +
Sbjct: 1 MDNNNPLSPHIQIYRWHISSLVSISHRITGIVNIFAITVICLWIFSLLLGESSYDLTKLF 60
Query: 64 MD---GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ G +CL TW+ +L IR+L+ D+ + K + I SI +
Sbjct: 61 LQSIFGKFIIICL---TWSFSFQVLSEIRHLVMDLGYGFELKTTKITGLLVIFGSIFFTI 117
Query: 121 IVWII 125
+ +++
Sbjct: 118 LFYLL 122
>gi|260576579|ref|ZP_05844567.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacter sp.
SW2]
gi|259021183|gb|EEW24491.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacter sp.
SW2]
Length = 131
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 8/132 (6%)
Query: 1 MSSIKNN--RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLS 58
M+ K RPLSPHLQ+YR+ +M S++ RITG + G + V+W A +
Sbjct: 1 MAEAKREIVRPLSPHLQVYRMKASMATSVLIRITGVGLMSGFILFVWWLLAAAISPEYFA 60
Query: 59 SLRCYMDGSVFEVCLFLYTWAVI-HHMLGGIRYLIWDVSLCLD----KKIATQMAKINII 113
+ + S F +F+ + A I +H LGG+R+L WD LD K++ M +
Sbjct: 61 FVNGIVT-SWFGYLIFIGSLAAIWYHYLGGLRHLYWDTGKGLDLETVDKLSWGMVIGTPV 119
Query: 114 ASILTVLIVWII 125
++LT+L +W I
Sbjct: 120 LTVLTILAIWGI 131
>gi|162147201|ref|YP_001601662.1| succinate dehydrogenase cytochrome b556 subunit [Gluconacetobacter
diazotrophicus PAl 5]
gi|161785778|emb|CAP55349.1| putative Succinate dehydrogenase cytochrome b556 subunit
[Gluconacetobacter diazotrophicus PAl 5]
Length = 153
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 59/114 (51%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RP+SPHLQ+YR +MF+SI +R G G+ + V W A G + ++
Sbjct: 20 RRPMSPHLQVYRFRLSMFLSIANRAAGVAAAAGSVLGVCWLNAAAKGPESFKKVQKVTRN 79
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ ++ L +T ++++H + G+R+L WD +KK + I + ++ T L
Sbjct: 80 PLGKLALVGWTLSLVYHFVAGLRHLSWDAGYRFEKKEINEDGPIAVGVTVGTTL 133
>gi|209544254|ref|YP_002276483.1| succinate dehydrogenase, cytochrome b556 subunit [Gluconacetobacter
diazotrophicus PAl 5]
gi|209531931|gb|ACI51868.1| succinate dehydrogenase, cytochrome b556 subunit [Gluconacetobacter
diazotrophicus PAl 5]
Length = 153
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 59/114 (51%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RP+SPHLQ+YR +MF+SI +R G G+ + V W A G + ++
Sbjct: 20 RRPMSPHLQVYRFRLSMFLSIANRAAGVAAAAGSVLGVCWLNAAAKGPESFKRVQKVTRN 79
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ ++ L +T ++++H + G+R+L WD +KK + I + ++ T L
Sbjct: 80 PMGKLALVGWTLSLVYHFVAGLRHLSWDAGYRFEKKEINEDGPIAVGVTVGTTL 133
>gi|71082950|ref|YP_265669.1| succinate dehydrogenase cytochrome b [Candidatus Pelagibacter
ubique HTCC1062]
gi|71062063|gb|AAZ21066.1| Succinate dehydrogenase cytochrome b [Candidatus Pelagibacter
ubique HTCC1062]
Length = 127
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 6/125 (4%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ NN PLSPH+QIYR + VSI HRITG V V+ W F + GE + + +
Sbjct: 1 MDNNNPLSPHIQIYRWHISSLVSISHRITGIVNIFAITVICLWIFSLLLGESSYDLTKLF 60
Query: 64 MD---GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ G +CL TW+ +L IR+L+ D+ + K I SI +
Sbjct: 61 LQSIFGKFIIICL---TWSFSFQVLSEIRHLVMDLGYGFELKTTKITGLFVIFGSIFFTI 117
Query: 121 IVWII 125
+ +++
Sbjct: 118 LFYLL 122
>gi|148554233|ref|YP_001261815.1| succinate dehydrogenase subunit C [Sphingomonas wittichii RW1]
gi|148499423|gb|ABQ67677.1| succinate dehydrogenase subunit C [Sphingomonas wittichii RW1]
Length = 135
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITG-SVVYLGTPVVVFWFFCIANGEHTLSSLR 61
S RPLSPHL I++ P M VSI+HR TG + + V+W A+G ++
Sbjct: 2 SRNPGRPLSPHLTIWKWGPHMAVSILHRATGVGLAIVAGLAFVWWLVAAASGPDAYATFY 61
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ TW+ H+ G+R+ + D+ + KI + ++ S+L L+
Sbjct: 62 KVATSWFGYLVAIGLTWSFFQHLFSGLRHFVLDIGAGYELKINKTGSIATMVGSVLVTLL 121
Query: 122 VWI 124
+W+
Sbjct: 122 IWV 124
>gi|254460410|ref|ZP_05073826.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacterales
bacterium HTCC2083]
gi|206676999|gb|EDZ41486.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacteraceae
bacterium HTCC2083]
Length = 103
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%)
Query: 26 SIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHML 85
SI+ RITG+ + L ++V+WF A E + ++ +V LFL W + +H L
Sbjct: 3 SILTRITGNAMLLAALLIVWWFLAAATSESYFAVANGFLTSWFGDVVLFLSLWGMWYHTL 62
Query: 86 GGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
G+R+LIWD ++ L+ A +M I SIL LI
Sbjct: 63 AGVRHLIWDNAIGLEINTAEKMGYAVIGGSILLTLI 98
>gi|166712288|ref|ZP_02243495.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas oryzae
pv. oryzicola BLS256]
Length = 131
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YR M SI++R TG V+ +G V+ + G + R +
Sbjct: 4 RERPLSPHLQVYRWQIQMVTSILNRATGIVLTVGALVIAAALLTLMLGPDHWNCFRDHAA 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+V LF +TW+ H+ GG+R+++ D + M +++I S + VW
Sbjct: 64 SWYGQVFLFGWTWSFAFHLFGGLRHMLQDFGQGYAVRSFVGMGWLSVILSFVLTGAVW 121
>gi|238650698|ref|YP_002916551.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
peacockii str. Rustic]
gi|238624796|gb|ACR47502.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
peacockii str. Rustic]
Length = 124
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP SPHL IY+ + +SI++R+TG ++ ++V+W + L
Sbjct: 6 QEIYNKRPTSPHLTIYKPQISSTLSILYRMTGVALFFAVSILVWWLILSKYDNNYLQLAE 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
C + ++CL ++A +H+ GIR+L WD+ + ++ S+L ++
Sbjct: 66 C----CIIKICLVAVSYAWFYHLCNGIRHLFWDIGYGFSITLVNITCWCVVVGSVLLTVL 121
Query: 122 VWI 124
+W+
Sbjct: 122 LWV 124
>gi|58581933|ref|YP_200949.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas oryzae
pv. oryzae KACC10331]
gi|84623845|ref|YP_451217.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas oryzae
pv. oryzae MAFF 311018]
gi|50313515|gb|AAT74619.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas oryzae
pv. oryzae]
gi|58426527|gb|AAW75564.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas oryzae
pv. oryzae KACC10331]
gi|84367785|dbj|BAE68943.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas oryzae
pv. oryzae MAFF 311018]
Length = 131
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YR M SI++R TG V+ +G V+ + G + R +
Sbjct: 4 RERPLSPHLQVYRWQIQMVTSILNRATGIVLTVGALVIAAALLTLMLGPDHWNCFRDHAA 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+V LF +TW+ H+ GG+R+++ D + M ++++ S + VW
Sbjct: 64 SWYGQVFLFGWTWSFAFHLFGGLRHMLQDFGQGYAVRSFVGMGWLSVLLSFVLTGAVW 121
>gi|119383319|ref|YP_914375.1| succinate dehydrogenase, cytochrome b subunit [Paracoccus
denitrificans PD1222]
gi|2493412|sp|Q59659|DHSC_PARDE RecName: Full=Succinate dehydrogenase cytochrome b556 subunit;
Short=Cytochrome b-556
gi|975316|gb|AAA75175.1| succinate dehydrogenase b-type cytochrome subunit [Paracoccus
denitrificans]
gi|119373086|gb|ABL68679.1| succinate dehydrogenase subunit C [Paracoccus denitrificans PD1222]
Length = 130
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 61/121 (50%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHLQ+YRL SI+ RITG + G ++ +W + +
Sbjct: 6 RGNRPLSPHLQVYRLPLAAITSIMTRITGHALVAGIVLITWWLVAAVTSPGAFACADWVV 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ + L WA+ +H+L G+R+L +D L+ + A + ++ I S++ ++ I
Sbjct: 66 RSWLGFIILTGSMWALWYHLLAGLRHLFYDAGYGLEIEQAHKSSQALIAGSVVLAVLTLI 125
Query: 125 I 125
+
Sbjct: 126 V 126
>gi|319779731|ref|YP_004130644.1| Succinate dehydrogenase cytochrome b-556 subunit [Taylorella
equigenitalis MCE9]
gi|317109755|gb|ADU92501.1| Succinate dehydrogenase cytochrome b-556 subunit [Taylorella
equigenitalis MCE9]
Length = 137
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 59/110 (53%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+ Y+L +SI+HR++G +++L P+++ F +G +SL G + V
Sbjct: 22 RAYKLPLPAILSILHRVSGVLIFLSLPILIHLFRNSLSGPVMFNSLATGFSGFIIRVVCI 81
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ W +HH+ GIR+LI D+ + +DK A + AKI I S++ + I
Sbjct: 82 VALWGFMHHLCAGIRFLILDLHIGMDKVSARKSAKIVFIVSLVLTFVFAI 131
>gi|325920388|ref|ZP_08182319.1| succinate dehydrogenase subunit C [Xanthomonas gardneri ATCC 19865]
gi|325549135|gb|EGD20058.1| succinate dehydrogenase subunit C [Xanthomonas gardneri ATCC 19865]
Length = 130
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YR M SI+HR TG ++ G V+ + G+ + L +
Sbjct: 4 RERPLSPHLQVYRWQIQMVTSILHRATGIILSGGALVIAAALLVLMLGQDHWTCLTQQLG 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
++ LF +TWA +H+ GIR+++ D + +++ S+L +W
Sbjct: 64 AWYGQLFLFGWTWAFAYHLSNGIRHIVQDFGYGYSIPAFVRSGWASVVVSLLITAAIW 121
>gi|119385745|ref|YP_916800.1| succinate dehydrogenase, cytochrome b subunit [Paracoccus
denitrificans PD1222]
gi|119376340|gb|ABL71104.1| succinate dehydrogenase subunit C [Paracoccus denitrificans PD1222]
Length = 125
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP SP++Q YR T +S HR++G LG + W A+G+ S +
Sbjct: 1 MSHRRPKSPNMQNYRPQLTSVLSFGHRLSGVAQSLGALGLAAWLMAGASGQDAFGSAQAL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + LFL T A+ +H+ G+R+L+WD + + + S++ L +W
Sbjct: 61 LLSVPGRIALFLVTLALFYHLCNGVRHLVWDSGRGFELRAIYAGGWTVVGTSLILTLALW 120
>gi|297183595|gb|ADI19722.1| hypothetical protein [uncultured bacterium EB000_36F02]
Length = 127
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 1/127 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
++N PLSPH+QIY + +SI HRITG + L ++ W + GE ++ +
Sbjct: 1 MENKNPLSPHIQIYSWNISSLISISHRITGVINILALTLICLWIVLLLLGEVNYEYIKFF 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS-ILTVLIV 122
+ + + + W+ +L IR+L WD+ + + I I S +LT+LI
Sbjct: 61 LQSFLGKFLILCLIWSFSFQILSEIRHLFWDLGYGFELMTSKITGLIVIFGSFVLTILIY 120
Query: 123 WIIKDIV 129
+I K I+
Sbjct: 121 FIGKQII 127
>gi|170729589|ref|YP_001775022.1| succinate dehydrogenase membrane anchor subunit [Xylella fastidiosa
M12]
gi|167964382|gb|ACA11392.1| succinate dehydrogenase membrane anchor subunit [Xylella fastidiosa
M12]
Length = 151
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+SS RPLSPHLQIYR M SI+HR TG + LG V+ + G
Sbjct: 19 LSSPPRERPLSPHLQIYRWQMQMVTSILHRATGVFLSLGVLVIAAGLLALMFGAEPWDYF 78
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
R ++ + L ++TW +H+ GIR++ D + + +++ SI+
Sbjct: 79 RSCLNLWYGQCFLLVWTWCFGYHLCNGIRHIAQDFGCGFAISSFLRSSWASVLGSIVITA 138
Query: 121 IVWI 124
VW+
Sbjct: 139 GVWV 142
>gi|289665883|ref|ZP_06487464.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
campestris pv. vasculorum NCPPB702]
gi|289669028|ref|ZP_06490103.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
campestris pv. musacearum NCPPB4381]
Length = 131
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YR M SI++R TG V+ +G V+ + G + R
Sbjct: 4 RERPLSPHLQVYRWQIQMVTSILNRATGIVLSVGALVIAAALLTLMLGPDHWNCFRDQTA 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+V LF +TW+ H+ GG+R+++ D + M +++I S + VW
Sbjct: 64 TWYGQVFLFGWTWSFAFHLFGGLRHMLQDFGQGYAVRSFISMGWLSVILSFVLTGAVW 121
>gi|260425602|ref|ZP_05779582.1| succinate dehydrogenase, cytochrome b556 subunit [Citreicella sp.
SE45]
gi|260423542|gb|EEX16792.1| succinate dehydrogenase, cytochrome b556 subunit [Citreicella sp.
SE45]
Length = 131
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 75/131 (57%), Gaps = 7/131 (5%)
Query: 1 MSSIKN-NRPLSPHL--QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL 57
M+ K RPLSP + Q YRL T S++ RITG+ + + ++++W +A G
Sbjct: 1 MAEAKRIERPLSPFMFVQYYRLQLTAVTSVMIRITGNAMMVAVLLLIWWLLALAAGPEYF 60
Query: 58 SSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKI----NII 113
+ ++ V ++ +F WA+ +H LGG+R+L++D LD + A ++ I +++
Sbjct: 61 ETAEWWITSFVGDLIMFGSLWAIWYHYLGGLRHLVFDAGKGLDIETAEKLGWICVYGSVV 120
Query: 114 ASILTVLIVWI 124
+ILTV+I+W+
Sbjct: 121 LTILTVIIIWL 131
>gi|186920110|ref|YP_001874764.1| succinate:cytochrome c oxidoreductase subunit 4 [Hemiselmis
andersenii]
gi|186461056|gb|ACC78218.1| succinate:cytochrome c oxidoreductase subunit 4 [Hemiselmis
andersenii]
Length = 142
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFC-IANGEHTLSSLRCY 63
+ NRPLSPHL +Y+ T FVSI HRI+GS++ L V+ F F+ + EH + Y
Sbjct: 18 ETNRPLSPHLYLYKAQLTSFVSIFHRISGSILSLSFIVLAFVFYLDVLFSEHYI----LY 73
Query: 64 MDGSVFEVCLFLYTWAVIH--------HMLGGIRYLIWDVSLCLDKK 102
G V E + + ++ + H+ G+R+LIWD+ L LD K
Sbjct: 74 CLGLVLETYGYWFFISLSYLLLTFFCLHVFNGMRHLIWDLGLGLDVK 120
>gi|11466547|ref|NP_044796.1| succinate:ubiquinone oxidoreductase subunit 3 [Reclinomonas
americana]
gi|1705531|sp|P80481|C560_RECAM RecName: Full=Succinate dehydrogenase cytochrome b560 subunit;
AltName: Full=Succinate dehydrogenase, subunit III
gi|2258377|gb|AAD11911.1| succinate:ubiquinone oxidoreductase subunit 3 [Reclinomonas
americana]
Length = 144
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY--- 63
NRP+SPHL IY+L T +SI HRITG V+ L + F+ + LSS Y
Sbjct: 20 NRPISPHLTIYKLQITNTLSIFHRITGGVLAL---TLCFFILILKMLNFHLSSYAFYSIA 76
Query: 64 -----MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
G +F F + +H+ G+R+L+WD L+ + I + + L
Sbjct: 77 YTLNQYSGFLFIAISFFLLLFIFYHLFAGLRHLVWDAGYALEIENVYLTGYIMLGLAFLF 136
Query: 119 VLIVWII 125
LI WII
Sbjct: 137 TLIAWII 143
>gi|241663421|ref|YP_002981781.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia
pickettii 12D]
gi|309781916|ref|ZP_07676649.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia sp.
5_7_47FAA]
gi|240865448|gb|ACS63109.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia
pickettii 12D]
gi|308919557|gb|EFP65221.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia sp.
5_7_47FAA]
Length = 136
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+IK RP+ ++ + YRL VSI+HR +G++++L P V++ F E +
Sbjct: 3 EAIKKARPVYRNIGLGDIARYRLPWAGKVSILHRASGALMFLLLPFVLYLFEQSLTSEIS 62
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ + +V + WA +HH GIRYLI D+ + +DK A++ A +I S+
Sbjct: 63 FAKFTALLSNGFAKVVVLALIWAYLHHFCAGIRYLILDLHIGIDKTSASKSAVSVLIVSL 122
Query: 117 LTVLI 121
L ++
Sbjct: 123 LLTVV 127
>gi|83748081|ref|ZP_00945110.1| Hypothetical Protein RRSL_02488 [Ralstonia solanacearum UW551]
gi|207723905|ref|YP_002254303.1| transmembrane succinate dehydrogenase (cytochrome b-556 subunit)
protein [Ralstonia solanacearum MolK2]
gi|207742801|ref|YP_002259193.1| transmembrane succinate dehydrogenase (cytochrome b-556 subunit)
protein [Ralstonia solanacearum IPO1609]
gi|83725267|gb|EAP72416.1| Hypothetical Protein RRSL_02488 [Ralstonia solanacearum UW551]
gi|206589111|emb|CAQ36073.1| transmembrane succinate dehydrogenase (cytochrome b-556 subunit)
protein [Ralstonia solanacearum MolK2]
gi|206594195|emb|CAQ61122.1| transmembrane succinate dehydrogenase (cytochrome b-556 subunit)
protein [Ralstonia solanacearum IPO1609]
Length = 136
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 5/125 (4%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+IK RP ++ + YRL VSI+HR +G++++L P V++ F E +
Sbjct: 3 EAIKKARPEFRNIGVGDIARYRLPWAGKVSILHRASGALMFLLLPFVLYLFEQSLTSEIS 62
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ + +V + WA +HH GIRYLI D+ + +DK + + A +IAS+
Sbjct: 63 FAKFTALLSNGFAKVVVLALIWAYLHHFCAGIRYLILDLHIGIDKTTSAKSAVSVLIASL 122
Query: 117 LTVLI 121
L ++
Sbjct: 123 LLTVV 127
>gi|187929230|ref|YP_001899717.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia
pickettii 12J]
gi|187726120|gb|ACD27285.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia
pickettii 12J]
Length = 136
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+IK RP+ ++ + YRL VSI+HR +G++++L P V++ F E +
Sbjct: 3 EAIKKARPVYRNIGLGDIARYRLPWAGKVSILHRASGALMFLLLPFVLYLFEQSLTSEIS 62
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ + +V + WA +HH G+RYLI D+ + +DK A++ A +I S+
Sbjct: 63 FAKFSALLSNGFAKVVVLALIWAYLHHFCAGVRYLILDLHIGIDKASASKSAVSVLIVSL 122
Query: 117 LTVLI 121
L ++
Sbjct: 123 LLTVV 127
>gi|73666822|ref|YP_302838.1| succinate dehydrogenase subunit C [Ehrlichia canis str. Jake]
gi|72393963|gb|AAZ68240.1| succinate dehydrogenase subunit C [Ehrlichia canis str. Jake]
Length = 136
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 9/101 (8%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV------VFWFFCIANGEHTLSSLR 61
RPLSPHLQIY+++ + SI+HR TG ++++G ++ F F I + S
Sbjct: 13 RPLSPHLQIYKVVYKL--SIMHRFTGMLLFVGLFIISWGIIAAFLFPKIIYEIYNFFS-T 69
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
CY+ F++ F++ +H L GIR+L+WD+ CL K
Sbjct: 70 CYLALYSFKLIAFIWLNIFSYHYLNGIRHLLWDLGFCLTKS 110
>gi|325917571|ref|ZP_08179771.1| succinate dehydrogenase subunit C [Xanthomonas vesicatoria ATCC
35937]
gi|325536205|gb|EGD08001.1| succinate dehydrogenase subunit C [Xanthomonas vesicatoria ATCC
35937]
Length = 131
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YR M SI++R TG V+ G + + G LR +
Sbjct: 4 RERPLSPHLQVYRWQIQMVTSILNRATGIVLSFGALAIAAALLTLMLGPEHWDCLRQHAA 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+V LF +TW H+ GG+R+++ D + + ++++ S++ +W
Sbjct: 64 AWYGQVFLFGWTWCFAFHLFGGLRHIMQDFGQGYAVRSFVSLGWLSVVLSLVLTAAIW 121
>gi|21242814|ref|NP_642396.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
axonopodis pv. citri str. 306]
gi|21108300|gb|AAM36932.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
axonopodis pv. citri str. 306]
gi|50981400|gb|AAT91478.1| succinate dehydrogenase subunit C [Xanthomonas citri]
Length = 131
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YR M SI++R TG V+ +G + + G + R
Sbjct: 4 RERPLSPHLQVYRWQIQMVTSILNRATGIVLTVGALAIAAALLTLMLGPDHWNCFRAQAA 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+V LF +TW+ H+ GG+R+++ D + M ++++ S++ +W
Sbjct: 64 TWYGQVFLFGWTWSFAFHLFGGLRHMLQDFGQGYAVRSFISMGWLSVVLSLVLTAAIW 121
>gi|325928377|ref|ZP_08189572.1| succinate dehydrogenase subunit C [Xanthomonas perforans 91-118]
gi|325541253|gb|EGD12800.1| succinate dehydrogenase subunit C [Xanthomonas perforans 91-118]
Length = 131
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YR M SI++R TG V+ +G + + G + R
Sbjct: 4 RERPLSPHLQVYRWQIQMVTSILNRATGIVLSVGALGIAAALLTLMLGPDHWNCFRDQAA 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+V LF +TW+ H+ GG+R+++ D + M ++++ S++ + +W
Sbjct: 64 TWYGQVFLFGWTWSFAFHLFGGLRHMLQDFGQGYAVRSFISMGWLSVVLSLVLTIAIW 121
>gi|190571454|ref|YP_001975812.1| succinate dehydrogenase, cytochrome b556 subunit [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|190357726|emb|CAQ55176.1| succinate dehydrogenase, cytochrome b556 subunit [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
Length = 123
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+NRPLSPHLQIY++ T F SI+HR+TG +++L ++ W+F + L +RC ++
Sbjct: 2 SNRPLSPHLQIYKVQVTSFFSIMHRLTGILLFLLLIILS-WYFILYVYSPKLIIVRC-LN 59
Query: 66 GSVF----EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
+F ++ L + ++H L GIR+L+WD L L+
Sbjct: 60 ALLFTPVAKLAYILCFVSFMYHFLNGIRHLLWDAGLNLE 98
>gi|15837672|ref|NP_298360.1| succinate dehydrogenase, membrane anchor subunit [Xylella
fastidiosa 9a5c]
gi|9106017|gb|AAF83880.1|AE003943_11 succinate dehydrogenase, membrane anchor subunit [Xylella
fastidiosa 9a5c]
Length = 142
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YR M SI+HR TG + LG V+ + G T R ++
Sbjct: 15 RERPLSPHLQVYRWQMQMVTSILHRATGVFLSLGVLVIAAGLLALMFGAATWDYFRSCLN 74
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ L ++TW +H+ GIR++ D + + +++ SI+ VW+
Sbjct: 75 LWYGQCFLLVWTWCFGYHLCNGIRHIAQDFGCGFAISSFVRSSWASVLGSIVITAGVWV 133
>gi|326404267|ref|YP_004284349.1| succinate dehydrogenase cytochrome b subunit [Acidiphilium
multivorum AIU301]
gi|325051129|dbj|BAJ81467.1| succinate dehydrogenase cytochrome b subunit [Acidiphilium
multivorum AIU301]
Length = 147
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RPLSPHLQ+YR T +SI+HRITG + G ++ W A S + +
Sbjct: 24 RRPLSPHLQVYRPQITSTLSILHRITGVALSAGAVLLSLWLAAAATSSGAFSVAQAIVGS 83
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
+ + LF +T+A+ +H GIR+L+WD + +
Sbjct: 84 ILGMIVLFGFTFALFYHFCNGIRHLLWDAGVGFE 117
>gi|254468837|ref|ZP_05082243.1| succinate dehydrogenase, cytochrome b556 subunit [beta
proteobacterium KB13]
gi|207087647|gb|EDZ64930.1| succinate dehydrogenase, cytochrome b556 subunit [beta
proteobacterium KB13]
Length = 124
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 4 IKNNRPLSPHLQIYRL-IPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++N P + +L R +P M VSI+HR++G V+++ P++ + E+ + +
Sbjct: 1 MENRNPKNLNLFTIRFPVPAM-VSILHRVSGVVLFVLMPLLTISLYWSLKNENIFNWVLL 59
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
D ++F++ L W +IHH++ G R+L+ D+ +D IA +KI ++AS L I
Sbjct: 60 LFDTTLFKLIKCLMLWGIIHHLIAGTRHLLLDLHFGVDLIIARMTSKIVLVASFLLTFI 118
>gi|163796399|ref|ZP_02190359.1| succinate dehydrogenase, cytochrome b subunit [alpha
proteobacterium BAL199]
gi|159178249|gb|EDP62793.1| succinate dehydrogenase, cytochrome b subunit [alpha
proteobacterium BAL199]
Length = 128
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 64/122 (52%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RPLSPHLQIY+ T +SI HR TG + G ++ +W A G + + ++ ++
Sbjct: 3 ADRRPLSPHLQIYKPQLTSVLSISHRATGVGLAAGLLLLTWWLLAAAAGPDSFAVVQDFL 62
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ + LF +++A++ H+ G+R+L WD + + +IAS+ ++ W
Sbjct: 63 GSWLGYLILFGFSYALMFHLCNGVRHLFWDAGWGFELDTVYKSGWAVVIASVALTVLAWA 122
Query: 125 IK 126
I
Sbjct: 123 IA 124
>gi|300703704|ref|YP_003745306.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
sdhd [Ralstonia solanacearum CFBP2957]
gi|299071367|emb|CBJ42686.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Ralstonia solanacearum CFBP2957]
Length = 136
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 5/125 (4%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+IK RP ++ + YRL VSI+HR++G++++L P V++ F E +
Sbjct: 3 EAIKKARPEFRNIGVGDIARYRLPWAGKVSILHRVSGALMFLLLPFVLYLFEQSLTSEIS 62
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ + +V + WA +HH G+RYLI D+ + +DK + + A +I S+
Sbjct: 63 FAKFTALLSSGFAKVVVLALIWAYLHHFCAGVRYLILDLHIGIDKTTSAKSAVSVLIVSL 122
Query: 117 LTVLI 121
L ++
Sbjct: 123 LLTVV 127
>gi|254448802|ref|ZP_05062259.1| succinate dehydrogenase, cytochrome b556 subunit [gamma
proteobacterium HTCC5015]
gi|198261643|gb|EDY85931.1| succinate dehydrogenase, cytochrome b556 subunit [gamma
proteobacterium HTCC5015]
Length = 119
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 6/107 (5%)
Query: 10 LSPHLQIYRLIPTMFVSIVHRITG---SVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
+SPHLQ+YRL ++SI+HR TG S+ L PVV+ ++ GE L+ ++
Sbjct: 1 MSPHLQVYRLPMLAWLSILHRATGVALSIAILLLPVVL--LTAVSGGE-AYDCLQQHLSA 57
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINII 113
+V LFL T ++ +H+ GIR+L WD + K A + I+++
Sbjct: 58 WYGQVVLFLITLSLNYHLCNGIRHLFWDAGHGFELKSADRSGAISVV 104
>gi|148260873|ref|YP_001235000.1| succinate dehydrogenase, cytochrome b subunit [Acidiphilium cryptum
JF-5]
gi|146402554|gb|ABQ31081.1| succinate dehydrogenase subunit C [Acidiphilium cryptum JF-5]
Length = 143
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RPLSPHLQ+YR T +SI+HRITG + G ++ W A S + +
Sbjct: 20 RRPLSPHLQVYRPQITSTLSILHRITGVALSAGAVLLSLWLAAAATSSGAFSVAQAIVGS 79
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
+ + LF +T+A+ +H GIR+L+WD + +
Sbjct: 80 ILGMIVLFGFTFALFYHFCNGIRHLLWDAGVGFE 113
>gi|21231576|ref|NP_637493.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|66768302|ref|YP_243064.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
campestris pv. campestris str. 8004]
gi|188991441|ref|YP_001903451.1| succinate dehydrogenase (ubiquinone) cytochrome b556 subunit
[Xanthomonas campestris pv. campestris str. B100]
gi|21113263|gb|AAM41417.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|66573634|gb|AAY49044.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
campestris pv. campestris str. 8004]
gi|167733201|emb|CAP51399.1| succinate dehydrogenase (ubiquinone) cytochrome b556 subunit
[Xanthomonas campestris pv. campestris]
Length = 131
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YR M SI++R TG V+ +G V+ + G + R
Sbjct: 4 RERPLSPHLQVYRWQIQMVTSILNRATGIVLSIGALVIAAALLTLMLGPDHWNCFRDMAA 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+V LF +TW H+ GG+R+++ D + + +++I S + +W
Sbjct: 64 AWYGQVFLFGWTWCFAFHLFGGLRHILQDFGQGYAVRSFVSIGWLSVILSFVLTAAIW 121
>gi|294624875|ref|ZP_06703532.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 11122]
gi|294665038|ref|ZP_06730345.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 10535]
gi|292600834|gb|EFF44914.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 11122]
gi|292605195|gb|EFF48539.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 10535]
Length = 131
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YR M SI++R TG V+ +G + + G + R
Sbjct: 4 RERPLSPHLQVYRWQIQMVTSILNRATGIVLSVGALGIAAALLTLMLGPDHWNCFRDQAA 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+V LF +TW+ H+ GG+R+++ D + M ++++ S++ +W
Sbjct: 64 TWYGQVFLFGWTWSFAFHLFGGLRHMLQDFGQGYAVRSFISMGWLSVVLSLVLTAAIW 121
>gi|299066396|emb|CBJ37581.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Ralstonia solanacearum CMR15]
Length = 140
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 5/125 (4%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+IK RP ++ + YRL VSI+HR +G++++L P V++ F E +
Sbjct: 7 EAIKKARPEFRNIGVGDIARYRLPWAGKVSILHRASGALMFLLLPFVLYLFEQSLTSEIS 66
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ + +V + WA +HH GIRYLI D+ + +DK +++ A +I S+
Sbjct: 67 FAKFTALLSNGFAKVVVLALIWAYLHHFCAGIRYLILDLHIGIDKTTSSKSAVSVLIVSL 126
Query: 117 LTVLI 121
L ++
Sbjct: 127 LLTVV 131
>gi|71899418|ref|ZP_00681577.1| Succinate dehydrogenase, cytochrome b subunit [Xylella fastidiosa
Ann-1]
gi|71730827|gb|EAO32899.1| Succinate dehydrogenase, cytochrome b subunit [Xylella fastidiosa
Ann-1]
Length = 142
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQIYR M SI+HR TG + LG V+ + G R ++
Sbjct: 15 RERPLSPHLQIYRWQMQMLTSILHRATGVFLSLGVLVIAAGLLALMFGAEPWDYFRSCLN 74
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ L ++TW +H+ GIR++ D + + +++ SI+ VW+
Sbjct: 75 LWYGQCFLLVWTWCFGYHLCNGIRHIAQDFGCGFAISSFLRSSWASVLGSIVITAGVWV 133
>gi|17546715|ref|NP_520117.1| transmembrane succinate dehydrogenase (cytochrome B-556 subunit)
oxidoreductase [Ralstonia solanacearum GMI1000]
gi|17429014|emb|CAD15698.1| putative transmembrane succinate dehydrogenase (cytochrome b-556
subunit) oxidoreductase protein [Ralstonia solanacearum
GMI1000]
Length = 140
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 5/125 (4%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+IK RP ++ + YRL VSI+HR +G++++L P V++ F E +
Sbjct: 7 EAIKKARPEFRNIGLGDIARYRLPWAGKVSILHRASGALMFLLLPFVLYLFEQSLTSEIS 66
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ + +V + WA +HH GIRYLI D+ + +DK +++ A +I S+
Sbjct: 67 FAKFTALLSNGFAKVVVLALIWAYLHHFCAGIRYLILDLHIGIDKTTSSKSAVSVLIVSL 126
Query: 117 LTVLI 121
L ++
Sbjct: 127 LLTVV 131
>gi|300691091|ref|YP_003752086.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Ralstonia solanacearum PSI07]
gi|299078151|emb|CBJ50794.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Ralstonia solanacearum PSI07]
Length = 136
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 5/125 (4%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+IK RP ++ + YRL VSI+HR +G++++L P V++ F E +
Sbjct: 3 EAIKKARPEFRNIGLGDIAHYRLPWAGKVSILHRASGALMFLLLPFVLYLFEQSLTSEIS 62
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ + +V + WA +HH GIRYLI D+ + +DK +++ A +I S+
Sbjct: 63 FAKFTALLSNGFAKVVVLALIWAYLHHFCAGIRYLILDLHIGIDKTTSSKSAVSVLIVSL 122
Query: 117 LTVLI 121
L ++
Sbjct: 123 LLTVV 127
>gi|83592538|ref|YP_426290.1| succinate dehydrogenase subunit C [Rhodospirillum rubrum ATCC
11170]
gi|83575452|gb|ABC22003.1| succinate dehydrogenase subunit C [Rhodospirillum rubrum ATCC
11170]
Length = 132
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 6 NNRPLSPHLQIYRLIP--TMFVSIVHRITGSVVYLG-TPVVVFWFFCIANGEHTLSSLRC 62
+ RP+SPHLQ+Y+L T +SI R+ G+ + +G T + W +GE +S++
Sbjct: 4 HPRPISPHLQVYKLHTKVTSMLSITFRVFGAALMVGGTFFFLLWIVAAGSGEQAFTSVQG 63
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + LF T + +H+ GIR+++WD D + + A+I+ L+
Sbjct: 64 FYGSPFGYLVLFGLTVVLFYHLCNGIRHMLWDTGFGFDMPTLRKTGAAAVGAAIVLSLLA 123
Query: 123 WII 125
W +
Sbjct: 124 WTV 126
>gi|329891125|ref|ZP_08269468.1| succinate dehydrogenase, cytochrome b556 subunit [Brevundimonas
diminuta ATCC 11568]
gi|328846426|gb|EGF95990.1| succinate dehydrogenase, cytochrome b556 subunit [Brevundimonas
diminuta ATCC 11568]
Length = 125
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 10 LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVF 69
+SP I+R TM SI+ R+T +G +++ W +A+G +S+ + GS F
Sbjct: 1 MSPFTDIWRWHMTMVASILFRVTIGAASVGAVLLLGWVAAVASGPDAFASVAAF-SGSPF 59
Query: 70 EVCL-FLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ + F TW + +L G R+LI D LD K A MA+I + I+ ++ W++
Sbjct: 60 GLFIWFGLTWVLFSFLLNGARHLINDAGKGLDLKSANLMAQIAVWGPIVLAVLFWVV 116
>gi|68171567|ref|ZP_00544942.1| Succinate dehydrogenase, cytochrome b subunit [Ehrlichia
chaffeensis str. Sapulpa]
gi|88658394|ref|YP_507709.1| succinate dehydrogenase, cytochrome b556 subunit [Ehrlichia
chaffeensis str. Arkansas]
gi|18139860|gb|AAL60178.1|AF416764_1 succinate dehydrogenase subunit C [Ehrlichia chaffeensis]
gi|67999008|gb|EAM85684.1| Succinate dehydrogenase, cytochrome b subunit [Ehrlichia
chaffeensis str. Sapulpa]
gi|88599851|gb|ABD45320.1| succinate dehydrogenase, cytochrome b556 subunit [Ehrlichia
chaffeensis str. Arkansas]
Length = 128
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 7/121 (5%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWF---FCIANGEHTLSSLRCYM 64
RPLSPHLQIY+++ + SI+HR TG +++LG V+ + F F + + S C
Sbjct: 5 RPLSPHLQIYKVVYKL--SIMHRFTGMILFLGLLVLSWGFILSFLCPQVVYRICSFFCNS 62
Query: 65 DGSVFEVCLFLYTW--AVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
S++ + L + W + +H + GIR++ WD+ L L K + + +++ I+
Sbjct: 63 YVSLYSLKLITFIWLNVLCYHYMNGIRHIFWDLGLGLSKSAVRTTGVVVVFLCLVSSFIL 122
Query: 123 W 123
+
Sbjct: 123 Y 123
>gi|225075124|ref|ZP_03718323.1| hypothetical protein NEIFLAOT_00123 [Neisseria flavescens
NRL30031/H210]
gi|224953608|gb|EEG34817.1| hypothetical protein NEIFLAOT_00123 [Neisseria flavescens
NRL30031/H210]
Length = 125
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+RP+ + RL VSI+HRI+G +++ PV++++F + E + + R +
Sbjct: 4 KSRPVFLEIPNIRLPIPGIVSILHRISGVGLFVMLPVLLYFFSGTLDREASFEAYRSAIS 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
++ L WA +HH L GIR+L DV L+ A AK+ + AS L + +V
Sbjct: 64 NPFVKLILIGLLWAYLHHFLAGIRFLFLDVHKGLELNTARATAKV-VFASALILTVV 119
>gi|52840772|ref|YP_094571.1| succinate dehydrogenase cytochrome b556 subunit C [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|52627883|gb|AAU26624.1| succinate dehydrogenase cytochrome b556 subunit C [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
Length = 130
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RP++ L + P SI+HRI+G +++L P V+F C E + +
Sbjct: 7 VNKKRPINLDLSSLKFPPMAIASILHRISGVLIFLLFPFVLFILGCSLQSEESFVQAKTM 66
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINII--ASILTVLI 121
+ +++ L+ + ++I+H++ GIR+LI D+ + A +M+ ++II A IL + +
Sbjct: 67 LANPFYKLMLWAFGASMIYHVIAGIRHLIMDMGFGESLR-AGRMSAVSIIVLAVILAIFL 125
Query: 122 -VWI 124
+WI
Sbjct: 126 GIWI 129
>gi|54293523|ref|YP_125938.1| succinate dehydrogenase, cytochrome b556 subunit [Legionella
pneumophila str. Lens]
gi|54296562|ref|YP_122931.1| succinate dehydrogenase, cytochrome b556 subunit [Legionella
pneumophila str. Paris]
gi|148360816|ref|YP_001252023.1| succinate dehydrogenase cytochrome b556 subunit C [Legionella
pneumophila str. Corby]
gi|296106120|ref|YP_003617820.1| succinate dehydrogenase cytochrome b-556 subunit [Legionella
pneumophila 2300/99 Alcoy]
gi|53750347|emb|CAH11741.1| succinate dehydrogenase, cytochrome b556 subunit [Legionella
pneumophila str. Paris]
gi|53753355|emb|CAH14805.1| succinate dehydrogenase, cytochrome b556 subunit [Legionella
pneumophila str. Lens]
gi|148282589|gb|ABQ56677.1| succinate dehydrogenase cytochrome b556 subunit C [Legionella
pneumophila str. Corby]
gi|295648021|gb|ADG23868.1| succinate dehydrogenase cytochrome b-556 subunit [Legionella
pneumophila 2300/99 Alcoy]
Length = 124
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RP++ L + P SI+HR++G +++L P V+F C E + + +
Sbjct: 1 MNKKRPINLDLSSLKFPPMAIASILHRVSGVLIFLLFPFVLFILGCSLQSEESFAQTKII 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
+ +++ L+ + ++I+H++ GIR+LI D+ + A +M+ ++IIA
Sbjct: 61 LANPYYKLLLWAFGASMIYHVIAGIRHLIMDMGFGESLR-AGRMSAVSIIA 110
>gi|317401832|gb|EFV82442.1| succinate dehydrogenase cytochrome B subunit [Achromobacter
xylosoxidans C54]
Length = 138
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA-NGEHTLSSLRCYMDGSVFEVCLFL 75
YRL +SI+HRI+G +++L P+V+ F + T +++ Y + ++ L +
Sbjct: 24 YRLPLAGKLSILHRISGILLFLCLPLVILPLFAASVASPQTFAAVAAYAGNPIVKLVLLV 83
Query: 76 YTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKI 110
W +HH GIRYL+ D+ L +DK A + A +
Sbjct: 84 LIWGYLHHFCAGIRYLLLDLHLGIDKLSAKKSAGV 118
>gi|311104829|ref|YP_003977682.1| succinate dehydrogenase, cytochrome b556 subunit [Achromobacter
xylosoxidans A8]
gi|310759518|gb|ADP14967.1| succinate dehydrogenase, cytochrome b556 subunit [Achromobacter
xylosoxidans A8]
Length = 137
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 13 HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA-NGEHTLSSLRCYMDGSVFEV 71
L YRL +SI+HR++G++++L P+V+ F + T +++ Y + ++
Sbjct: 19 QLASYRLPLAGKLSILHRVSGALLFLCLPLVILPLFAASVAAPQTFAAVAAYAGNPIVKL 78
Query: 72 CLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKI 110
+ W +HH GIRYL+ D+ + +DK A + A +
Sbjct: 79 VFLVLIWGYLHHFCAGIRYLLLDLHIGIDKLSAKKSAGV 117
>gi|33593355|ref|NP_880999.1| succinate dehydrogenase cytochrome B subunit [Bordetella pertussis
Tohama I]
gi|33597755|ref|NP_885398.1| succinate dehydrogenase cytochrome B subunit [Bordetella
parapertussis 12822]
gi|33602657|ref|NP_890217.1| succinate dehydrogenase cytochrome B subunit [Bordetella
bronchiseptica RB50]
gi|33572711|emb|CAE42635.1| succinate dehydrogenase cytochrome B subunit [Bordetella pertussis
Tohama I]
gi|33574184|emb|CAE38515.1| succinate dehydrogenase cytochrome B subunit [Bordetella
parapertussis]
gi|33577099|emb|CAE35655.1| succinate dehydrogenase cytochrome B subunit [Bordetella
bronchiseptica RB50]
gi|332382764|gb|AEE67611.1| succinate dehydrogenase cytochrome B subunit [Bordetella pertussis
CS]
Length = 137
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 12 PHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA-NGEHTLSSLRCYMDGSVFE 70
P + YRL +SI+HRI+G++++L P+V+ F + + + + Y + +
Sbjct: 18 PQILSYRLPLAGKLSILHRISGALLFLCLPLVIVPLFAASVTSPESYAQVAQYAANPLVK 77
Query: 71 VCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ L W +HH GIRYL+ D+ + LDK A + A + S+ L+
Sbjct: 78 LVLLALIWGYLHHFCAGIRYLVLDLHIGLDKVSAQKSAGVAFGVSLALTLV 128
>gi|149926165|ref|ZP_01914427.1| succinate dehydrogenase cytochrome B subunit [Limnobacter sp.
MED105]
gi|149824983|gb|EDM84195.1| succinate dehydrogenase cytochrome B subunit [Limnobacter sp.
MED105]
Length = 137
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA-NGEH 55
+++ RP+ ++ + YRL +SI+HR++G+V++L PV++ F + E
Sbjct: 3 NTVAKKRPVYRNIHVTQILKYRLPLAGKLSILHRVSGAVLFLALPVILLPLFDKSITSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKI 110
T ++ + + ++ L W+ +HH GIRYL+ D+ + +K A++ A I
Sbjct: 63 TFLEMQSLVSSPLVKIVLLGLIWSYLHHFAAGIRYLVLDMHVGTEKYAASKSAGI 117
>gi|187926533|ref|YP_001892878.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia
pickettii 12J]
gi|241666044|ref|YP_002984403.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia
pickettii 12D]
gi|187728287|gb|ACD29451.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia
pickettii 12J]
gi|240868071|gb|ACS65731.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia
pickettii 12D]
Length = 158
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YRL VSI+HR +G++++L P V++ F E + + + +V +
Sbjct: 45 YRLPWAGKVSILHRASGALMFLLLPFVLYLFEQSLTSEISFAKFSALLSNGFAKVVVLAL 104
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
WA +HH G+RYLI D+ + +DK A++ A +I S+L ++
Sbjct: 105 IWAYLHHFCAGVRYLILDLHIGIDKASASKSAVSVLIVSLLLTVV 149
>gi|182680904|ref|YP_001829064.1| succinate dehydrogenase, cytochrome b556 subunit [Xylella
fastidiosa M23]
gi|182631014|gb|ACB91790.1| succinate dehydrogenase, cytochrome b556 subunit [Xylella
fastidiosa M23]
Length = 131
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YR M SI+HR TG + LG V+ + G R ++
Sbjct: 4 RERPLSPHLQVYRWQMQMVTSILHRATGVFLSLGVLVIAAGLLALMFGPEPWDYFRSCLN 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ L ++TW +H+ GIR++ D + + +++ SI+ VW
Sbjct: 64 LWYGQCFLLVWTWCFGYHLCNGIRHIAQDFGCGFAISSFLRSSWASVLGSIVITAGVW 121
>gi|309778645|ref|ZP_07673422.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia sp.
5_7_47FAA]
gi|308922560|gb|EFP68180.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia sp.
5_7_47FAA]
Length = 136
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 56/105 (53%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YRL VSI+HR +G++++L P V++ F E + + + +V +
Sbjct: 23 YRLPWAGKVSILHRASGALMFLLLPFVLYLFEQSLTSEISFAKFTALLSNGFAKVVVLAL 82
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
WA +HH GIRYLI D+ + +DK A++ A +I S+L ++
Sbjct: 83 IWAYLHHFCAGIRYLILDLHIGIDKTSASKSAVSVLIVSLLLTVV 127
>gi|257093959|ref|YP_003167600.1| succinate dehydrogenase, cytochrome b556 subunit [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257046483|gb|ACV35671.1| succinate dehydrogenase, cytochrome b556 subunit [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 130
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+IK RP + L RL +SI+HR++G+ ++L PV+++ F T ++++
Sbjct: 5 AIKKRRPKNLDLPTIRLPLPGILSILHRVSGAGLFLMLPVLLWLFQGSLASSETFAAVKG 64
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ V ++ L W +HH GIRYL+ D+ ++ + A +KI SI LI+
Sbjct: 65 VVGHPVAKIVLLGLIWFYMHHFCAGIRYLLLDLHKGIELEAARLSSKIVFAVSIALTLII 124
>gi|91793541|ref|YP_563192.1| succinate dehydrogenase, cytochrome b subunit [Shewanella
denitrificans OS217]
gi|91715543|gb|ABE55469.1| succinate dehydrogenase subunit C [Shewanella denitrificans OS217]
Length = 131
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP+ LQ R T VSI+HRI+G ++ ++++ +S++
Sbjct: 6 QNVKKQRPVHLDLQTIRFPATAIVSILHRISGVIMLFAIGILLWLLNSTLTSAEGFASVQ 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
DG V + L+ A+ +H+LGGIR+LI D + K T AK
Sbjct: 66 SLFDGFVMKFILWGILTALGYHLLGGIRHLIMDAGCWEEFKSGTASAK 113
>gi|42521018|ref|NP_966933.1| succinate dehydrogenase, cytochrome b556 subunit [Wolbachia
endosymbiont of Drosophila melanogaster]
gi|42410759|gb|AAS14867.1| succinate dehydrogenase, cytochrome b556 subunit [Wolbachia
endosymbiont of Drosophila melanogaster]
Length = 125
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
++RPLSPHLQIY++ T F SI+HR+TG ++ +++ W+F + L +R Y++
Sbjct: 2 SDRPLSPHLQIYKVQVTSFFSIMHRLTG-ILLFLLLMILSWYFILHVYFPELLIVR-YLN 59
Query: 66 GSVF----EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
+F ++ L + ++H L GIR+L+WDV L L+
Sbjct: 60 ALLFTPVAKLAYVLCFISFVYHFLNGIRHLLWDVGLNLE 98
>gi|91205983|ref|YP_538338.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia bellii
RML369-C]
gi|157826653|ref|YP_001495717.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia bellii
OSU 85-389]
gi|122425294|sp|Q1RHB5|DHSC_RICBR RecName: Full=Succinate dehydrogenase cytochrome b556 subunit;
Short=Cytochrome b-556
gi|91069527|gb|ABE05249.1| Succinate dehydrogenase cytochrome b-556 subunit [Rickettsia bellii
RML369-C]
gi|157801957|gb|ABV78680.1| Succinate dehydrogenase cytochrome b-556 subunit [Rickettsia bellii
OSU 85-389]
Length = 125
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP SPHL IY+ + +SI+HR+TG ++ ++ +WF ++ + L
Sbjct: 6 QEIYNKRPTSPHLTIYKPQISSTLSILHRMTGVALFFAVSILAWWF-ILSKFDSNYIKLA 64
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ L + W +H+ GIR+L WD+ L K +I S+L ++
Sbjct: 65 NCCCIIKICLILTSFAW--FYHLCNGIRHLFWDIGLGFSIKAVNLTGWSVVICSVLFTIL 122
Query: 122 VWI 124
+W+
Sbjct: 123 LWV 125
>gi|28198267|ref|NP_778581.1| succinate dehydrogenase membrane anchor subunit [Xylella fastidiosa
Temecula1]
gi|28056337|gb|AAO28230.1| succinate dehydrogenase membrane anchor subunit [Xylella fastidiosa
Temecula1]
Length = 142
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YR M SI+HR TG + LG V+ + G R ++
Sbjct: 15 RERPLSPHLQVYRWQMQMVTSILHRATGVFLSLGVLVIAAGLLALMFGPEPWDYFRSCLN 74
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ L ++TW +H+ GIR++ D + + +++ SI+ VW
Sbjct: 75 LWYGQCFLLVWTWCFGYHLCNGIRHIAQDFGCGFAISSFLRSSWASVLGSIVITAGVW 132
>gi|56752597|gb|AAW24512.1| SJCHGC05423 protein [Schistosoma japonicum]
gi|226489330|emb|CAX75809.1| succinate dehydrogenase complex, subunit C, integral membrane
protein [Schistosoma japonicum]
gi|226489332|emb|CAX75810.1| succinate dehydrogenase complex, subunit C, integral membrane
protein [Schistosoma japonicum]
gi|226489334|emb|CAX75811.1| succinate dehydrogenase complex, subunit C, integral membrane
protein [Schistosoma japonicum]
gi|226489336|emb|CAX75812.1| succinate dehydrogenase complex, subunit C, integral membrane
protein [Schistosoma japonicum]
gi|226489338|emb|CAX75813.1| succinate dehydrogenase complex, subunit C, integral membrane
protein [Schistosoma japonicum]
gi|226489340|emb|CAX75814.1| succinate dehydrogenase complex, subunit C, integral membrane
protein [Schistosoma japonicum]
Length = 192
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITG-SVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+I RP SPHLQIY M S +HR TG ++ + + V + FF + + L ++
Sbjct: 66 NITGGRPWSPHLQIYSAPLVMRFSFLHRATGIAMAIVWSSVGIGAFFFTGHYDSVLDYVK 125
Query: 62 -CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
++ +V C F+ + +++H L G+R+L WD ++ K + I + +S++
Sbjct: 126 NMHLGDTVITACKFVLCYPLVYHYLNGMRHLAWDYAIGFPIKTCNKTGFIALGSSLVVAA 185
Query: 121 IVWIIK 126
I+ I+
Sbjct: 186 ILACIR 191
>gi|311253955|ref|XP_003125707.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like [Sus scrofa]
Length = 169
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 9/122 (7%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSS 59
++ +NRPLSPH+ IYR P++ SI HR TG V G V +F + N E L
Sbjct: 45 NLGSNRPLSPHITIYRSTPSLGTSICHRGTGVAVSCG--VSLFGLSALLLPGNFESHLEL 102
Query: 60 LRCYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
++ G ++ F + +++H GIR+LIWD+ L Q+ + ++ ILT
Sbjct: 103 VKSLCLGPTLIYTAKFGIVFPLMYHTWNGIRHLIWDLGKGLT---IPQLTQSGVVVLILT 159
Query: 119 VL 120
VL
Sbjct: 160 VL 161
>gi|241760378|ref|ZP_04758473.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
flavescens SK114]
gi|241319256|gb|EER55734.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
flavescens SK114]
Length = 125
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+RP+ + RL VSI+HRI+G +++ PV++++F + E + + R +
Sbjct: 4 KSRPVFLEIPNIRLPIPGIVSILHRISGVGLFVMLPVLLYFFSGTLDREASFEAYRSAIS 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
++ L WA +HH GIR+L DV L+ A AK+ + AS L + +V
Sbjct: 64 NPFVKLILIGLLWAYLHHFFAGIRFLFLDVHKGLELNTARATAKV-VFASALILTVV 119
>gi|261379697|ref|ZP_05984270.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
subflava NJ9703]
gi|284797361|gb|EFC52708.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
subflava NJ9703]
Length = 125
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+RP+ + RL VSI+HRI+G +++ PV++++F + E + + R +
Sbjct: 4 KSRPVFLEIPNIRLPIPGIVSILHRISGVGLFVMLPVLLYFFSGTLDREASFEAYRSAIS 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
++ L WA +HH GIR+L DV L+ A AK+ + AS L + +V
Sbjct: 64 NPFVKLILIGLLWAYLHHFFAGIRFLFLDVHKGLELNTARTTAKV-VFASALILTVV 119
>gi|300312278|ref|YP_003776370.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD protein [Herbaspirillum seropedicae SmR1]
gi|300075063|gb|ADJ64462.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD protein [Herbaspirillum seropedicae SmR1]
Length = 136
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 5/126 (3%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+ K RP ++ + YR+ VSI+HRI+G ++L P +++ E T
Sbjct: 3 EAAKPQRPQFRNIHLTQIAGYRMPLAAIVSIMHRISGLFLFLMLPFILYLLDSSLLSEGT 62
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
L+ + G ++ + +WA +HH GIR+LI D + LDK A + + ++ SI
Sbjct: 63 FDYLKGFTSGWFVKLVILALSWAYLHHFCAGIRHLIMDNHIGLDKDSARKSSATVLVISI 122
Query: 117 LTVLIV 122
+++V
Sbjct: 123 ALMVLV 128
>gi|113868593|ref|YP_727082.1| succinate dehydrogenase (cytochrome b subunit) [Ralstonia eutropha
H16]
gi|113527369|emb|CAJ93714.1| succinate dehydrogenase (cytochrome b subunit) [Ralstonia eutropha
H16]
Length = 136
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
++K RP ++ I YRL VSI+HR++G++++L P V++ F E +
Sbjct: 3 EAVKQARPEYRNIGIAQIARYRLPWAGKVSILHRVSGALMFLLLPFVLYLFEQSITSELS 62
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ + G ++ L + W +HH GIR+L+ DV + + K + + A
Sbjct: 63 FAKFSALLSGGFVKLVLLVLIWGYLHHFCAGIRFLLLDVHVGVSKPASAKSA 114
>gi|30249045|ref|NP_841115.1| succinate dehydrogenase, cytochrome b subunit [Nitrosomonas
europaea ATCC 19718]
gi|30138662|emb|CAD84957.1| Succinate dehydrogenase, cytochrome b subunit [Nitrosomonas
europaea ATCC 19718]
Length = 130
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 68/114 (59%), Gaps = 4/114 (3%)
Query: 14 LQIYRLIPTMFVSIVHRITGSVVYL-GTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVC 72
L+I + +P + VSI+HRI+G +++L G P+ ++ + T +SL+ + + ++
Sbjct: 17 LKIRQPLPAI-VSILHRISGVLLFLPGIPLFLYGLQMLLQSPETFASLQSNLAHPLCKLF 75
Query: 73 LFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINII-ASILTVLI-VWI 124
L L TW IHH+L GIR+L+ D+ + + A +K+ ++ +ILT L +W+
Sbjct: 76 LLLATWFFIHHLLAGIRHLMLDLHYGMQLEQARLSSKLVLVFGAILTALTGIWL 129
>gi|33320238|gb|AAQ05856.1| SdhC protein [Cupriavidus necator]
Length = 140
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
++K RP ++ I YRL VSI+HR++G++++L P V++ F E +
Sbjct: 7 EAVKQARPEYRNIGIAQIARYRLPWAGKVSILHRVSGALMFLLLPFVLYLFEQSITSELS 66
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ + G ++ L + W +HH GIR+L+ DV + + K + + A
Sbjct: 67 FAKFSALLSGGFVKLVLLVLIWGYLHHFCAGIRFLLLDVHVGVSKPASAKSA 118
>gi|56416566|ref|YP_153640.1| succinate dehydrogenase cytochrome b556 subunit [Anaplasma
marginale str. St. Maries]
gi|222474934|ref|YP_002563349.1| succinate dehydrogenase cytochrome b556 subunit (sdhC) [Anaplasma
marginale str. Florida]
gi|56387798|gb|AAV86385.1| succinate dehydrogenase cytochrome b556 subunit [Anaplasma
marginale str. St. Maries]
gi|222419070|gb|ACM49093.1| succinate dehydrogenase cytochrome b556 subunit (sdhC) [Anaplasma
marginale str. Florida]
Length = 127
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 25/136 (18%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ +RPLSPHLQ+Y+L +SI HR +G ++ G V+ W F + LRC
Sbjct: 2 VLRSRPLSPHLQVYKLPVAALLSITHRASGLFLFFGLSVLS-WLFVL---------LRCA 51
Query: 64 MDG---------SVFEVCLFLYTW--AVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINI 112
D F V L ++ A +H G+R+L+WD + LDK T + +
Sbjct: 52 PDCIAPFLANPLGFFLVKLLSFSCCVAFCYHYFNGVRHLLWDCGVGLDKTAVTASSAFVL 111
Query: 113 IA----SILTVLIVWI 124
+ S++ VW+
Sbjct: 112 LLTAAFSVVAFFFVWL 127
>gi|78047797|ref|YP_363972.1| putative succinate dehydrogenase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78036227|emb|CAJ23918.1| putative succinate dehydrogenase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 131
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+Y M SI++R TG V+ +G + + G + R
Sbjct: 4 RERPLSPHLQVYLWQIQMVTSILNRATGIVLSVGALGIAAALLTLMLGPDHWNCFRDQAA 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+V LF +TW+ H+ GG+R+++ D + M ++++ S++ + +W
Sbjct: 64 TWYGQVFLFGWTWSFAFHLFGGLRHMLQDFGQGYAVRSFISMGWLSVVLSLVLTIAIW 121
>gi|189184864|ref|YP_001938649.1| succinate dehydrogenase cytochrome b-556 subunit [Orientia
tsutsugamushi str. Ikeda]
gi|189181635|dbj|BAG41415.1| succinate dehydrogenase cytochrome b-556 subunit [Orientia
tsutsugamushi str. Ikeda]
Length = 127
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RP+SPH+ IYR+ +M +SI+HR++G V+ G ++ +W + + +
Sbjct: 7 SHTRPMSPHITIYRMQMSMILSILHRLSGMAVFGGASIITWWLILCVYSDFDRVVVDIFY 66
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ F+ ++L + H+ GIR+LIWD K
Sbjct: 67 N-LWFQALIYLTIFTTCFHLCTGIRHLIWDTGYGFSIK 103
>gi|319637649|ref|ZP_07992415.1| succinate dehydrogenase cytochrome B subunit [Neisseria mucosa
C102]
gi|317400804|gb|EFV81459.1| succinate dehydrogenase cytochrome B subunit [Neisseria mucosa
C102]
Length = 125
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+RP+ + RL VSI+HRI+G ++L PV+++ F + E + + R +
Sbjct: 4 KSRPVFLEIPNIRLPIPGIVSILHRISGVGLFLMLPVLLYLFSGTLDRESSFEAYRSVIS 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
++ L WA +HH+ GIR+L D L+ A AK + AS L + +V
Sbjct: 64 NPFVKLILIGLLWAYLHHLFAGIRFLFLDAHKGLELNTARNTAK-AVFASALVLTVV 119
>gi|307295105|ref|ZP_07574947.1| succinate dehydrogenase, cytochrome b556 subunit [Sphingobium
chlorophenolicum L-1]
gi|306879579|gb|EFN10797.1| succinate dehydrogenase, cytochrome b556 subunit [Sphingobium
chlorophenolicum L-1]
Length = 131
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGS-VVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+RPLSPHL I++ P M VSI+HR+TG+ + G +V+W A+G ++
Sbjct: 5 TSRPLSPHLTIWKWGPAMAVSIMHRVTGNGLATAGALGLVWWLMAAASGPEAYATFVTCA 64
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ + + +W H+ G+R+ + D+ + K
Sbjct: 65 TSPIGYLVMAGLSWFFFQHLCSGLRHFVLDMGAGYELK 102
>gi|103488506|ref|YP_618067.1| succinate dehydrogenase, cytochrome b subunit [Sphingopyxis
alaskensis RB2256]
gi|98978583|gb|ABF54734.1| succinate dehydrogenase subunit C [Sphingopyxis alaskensis RB2256]
Length = 147
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 13/108 (12%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITG-SVVYLGTPVVVFWFFCIANGEHTLSSLRCYM-- 64
RP SPHLQ+Y+ P M VSI HR++G + +G + ++W +A G ++ +
Sbjct: 9 RPRSPHLQVYKWTPAMAVSIFHRVSGDGLAIVGAGMFLWWLGALAAGPDAYAAFVACVWH 68
Query: 65 --DGSVF--------EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
D F ++ L TWA H+ G+R+ + D + +
Sbjct: 69 DPDAGTFHQVTNILGKIVLIGLTWAFFQHLFSGLRHFVLDAGAGYELR 116
>gi|329847590|ref|ZP_08262618.1| succinate dehydrogenase, cytochrome b556 subunit [Asticcacaulis
biprosthecum C19]
gi|328842653|gb|EGF92222.1| succinate dehydrogenase, cytochrome b556 subunit [Asticcacaulis
biprosthecum C19]
Length = 112
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
MF SI+HRITGS G ++ W C+A G T + Y + + F + A
Sbjct: 1 MFSSIMHRITGSAAVGGVVLIAAWLVCLALGRETYTVFLQYASTPLGLLVWFGLSLAGFV 60
Query: 83 HMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
H+ GG+R+LIWD + K A + I+ L W +
Sbjct: 61 HLGGGLRHLIWDTGASFELKKANALTAWTFALGIILTLAFWAV 103
>gi|58698191|ref|ZP_00373112.1| succinate dehydrogenase, cytochrome b556 subunit [Wolbachia
endosymbiont of Drosophila ananassae]
gi|225630885|ref|YP_002727676.1| succinate dehydrogenase, cytochrome b556 subunit [Wolbachia sp.
wRi]
gi|58535272|gb|EAL59350.1| succinate dehydrogenase, cytochrome b556 subunit [Wolbachia
endosymbiont of Drosophila ananassae]
gi|225592866|gb|ACN95885.1| succinate dehydrogenase, cytochrome b556 subunit [Wolbachia sp.
wRi]
Length = 125
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 60/99 (60%), Gaps = 6/99 (6%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
++RPLSPHLQIY++ T F SI+HR+TG ++ +++ W+F + L +R Y++
Sbjct: 2 SDRPLSPHLQIYKVQVTSFFSIMHRLTG-ILLFLLLMILSWYFILHVYFPELLIVR-YLN 59
Query: 66 GSVF----EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
+F ++ L + ++H L GIR+L+WD L L+
Sbjct: 60 ALLFTPVAKLAYVLCFISFVYHFLNGIRHLLWDAGLNLE 98
>gi|262186706|ref|YP_003275965.1| succinate dehydrogenase subunit 3 [Pleurozia purpurea]
gi|237780703|gb|ACR19349.1| succinate dehydrogenase subunit 3 [Pleurozia purpurea]
Length = 137
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 17/108 (15%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K NRPLSPHL IY+ T SI HRI+G+ +L T +V+F F G+ +L+ Y
Sbjct: 1 MKINRPLSPHLTIYKPQLTSTFSIFHRISGA--FLAT-MVLFSIFSFKIGDLSLTFYHFY 57
Query: 64 MDGSVFEVCLFLYTWAVI-----------HHMLGGIRYLIWDVSLCLD 100
F + F W +I +HM G+R+L+WD L L+
Sbjct: 58 ---QYFFLLTFYLNWVIISLVNFTLLALCYHMSNGVRHLLWDSGLFLE 102
>gi|224824513|ref|ZP_03697620.1| succinate dehydrogenase, cytochrome b556 subunit [Lutiella
nitroferrum 2002]
gi|224603006|gb|EEG09182.1| succinate dehydrogenase, cytochrome b556 subunit [Lutiella
nitroferrum 2002]
Length = 124
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
++ RP L RL VSI+HRI+G ++ P++++ + + R
Sbjct: 1 MQKQRPKHLDLAKIRLPIPGIVSILHRISGVALFFSLPLLIYLLHGTLSSAEAFDAYRAV 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + ++ L WA +HH GIR+L DV L+ + A AK I+ S+ +I+
Sbjct: 61 VSHPLMKLVLIGLLWAFMHHFCAGIRFLFLDVHKGLELQTARATAKSVIVISLALTVILG 120
Query: 124 II 125
++
Sbjct: 121 VV 122
>gi|296532571|ref|ZP_06895277.1| succinate dehydrogenase cytochrome b558 subunit [Roseomonas
cervicalis ATCC 49957]
gi|296267096|gb|EFH13015.1| succinate dehydrogenase cytochrome b558 subunit [Roseomonas
cervicalis ATCC 49957]
Length = 148
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIP-TMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ NRPLSPHLQ+Y ++ T +SI HR TG +G V+ +W A G +++
Sbjct: 18 DGTRVNRPLSPHLQVYDMLQITSGLSIAHRATGVAWSVGLLVLAWWLLAAAAGPGPFATV 77
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ ++ + + LF T +H L G+R+L+WD D + + +I + + +
Sbjct: 78 QWFLSSFLGMLMLFGMTAVAWYHTLAGLRHLMWDAGYGFDLPTTYRTGRAVLIGTGVLTV 137
Query: 121 IVWII 125
+ W+I
Sbjct: 138 LTWLI 142
>gi|171059387|ref|YP_001791736.1| succinate dehydrogenase, cytochrome b556 subunit [Leptothrix
cholodnii SP-6]
gi|170776832|gb|ACB34971.1| succinate dehydrogenase, cytochrome b556 subunit [Leptothrix
cholodnii SP-6]
Length = 142
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 14/133 (10%)
Query: 1 MSSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFF------C 49
M+ RP+ ++ I YRL P VSI+HR++G++++L P+++ WFF
Sbjct: 1 MADSTPQRPVFRNIHITDIASYRLPPAGIVSILHRVSGAMMFLLLPLII-WFFDTSVTSE 59
Query: 50 IANGEHT--LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQM 107
++ E T SS ++ G + ++ WA +HH + G+R+L D + + K+
Sbjct: 60 VSYEEFTAAFSSGIGFVPGVLVKLVALGLIWAYLHHFIAGVRHLWMDATHSVTKQHGHSS 119
Query: 108 AKINIIASILTVL 120
A + +++S+L L
Sbjct: 120 ALVTLVSSVLLTL 132
>gi|241765615|ref|ZP_04763570.1| succinate dehydrogenase, cytochrome b556 subunit [Acidovorax
delafieldii 2AN]
gi|241364553|gb|EER59619.1| succinate dehydrogenase, cytochrome b556 subunit [Acidovorax
delafieldii 2AN]
Length = 144
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 14/136 (10%)
Query: 1 MSSIKNNRP------LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE 54
M+ + RP L YR+ P +VSI+HR +G+V++L P V++ F + E
Sbjct: 1 MTELAKKRPEFRNINAFKDLTTYRMTPAAWVSILHRASGAVMFLLLPFVLWMFDTSVSSE 60
Query: 55 HTLSSLRC-------YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQ 106
+ + + ++ G ++ W +HHM+ G+R+L DVS ++K+
Sbjct: 61 ISFGTFKAAFNAGLGFLPGWFIKLVALALIWGYLHHMIAGMRHLWMDVSHEAVNKQFGKT 120
Query: 107 MAKINIIASILTVLIV 122
A + + SI L++
Sbjct: 121 SAVVTLTISIALTLVL 136
>gi|34496520|ref|NP_900735.1| succinate dehydrogenase cytochrome b-556 subunit [Chromobacterium
violaceum ATCC 12472]
gi|34102374|gb|AAQ58740.1| succinate dehydrogenase cytochrome b-556 subunit [Chromobacterium
violaceum ATCC 12472]
Length = 125
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 55/113 (48%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
++ RP L RL FVSI+HR++G ++ P++++ + + + +
Sbjct: 1 MQKQRPKHLDLARIRLPVPGFVSILHRVSGVALFFSLPLLIYLLHGSLSSAESFDTYKAV 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ + ++ L WA +HH GIR+L D+ L+ + A AK ++ S+
Sbjct: 61 VSHPLMKLALLGLIWAYLHHFCAGIRFLFLDIHKGLELETARGTAKTVLVVSL 113
>gi|253996130|ref|YP_003048194.1| succinate dehydrogenase, cytochrome b556 subunit [Methylotenera
mobilis JLW8]
gi|253982809|gb|ACT47667.1| succinate dehydrogenase, cytochrome b556 subunit [Methylotenera
mobilis JLW8]
Length = 129
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
NRP + +L RL VSI+HR++G V++L TP +++ N E +LS+L
Sbjct: 9 NRPKNLNLFTIRLPINAVVSILHRMSGMVLFLFTPALIWSLQASLNSEASLSALGDMFQH 68
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDV 95
F++ L +W HH G+R+L DV
Sbjct: 69 WAFKLMLIALSWPFFHHFYAGLRHLGQDV 97
>gi|320168382|gb|EFW45281.1| succinate dehydrogenase cytochrome b subunit [Capsaspora owczarzaki
ATCC 30864]
Length = 159
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLG-TPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHL IYR T +SI HR TG+ + + V+ + + + + +R
Sbjct: 39 GRPLSPHLTIYRPQLTSVLSITHRATGAAMTFAISTAAVYSALSVHDFAYNIDLVRSLDL 98
Query: 66 GSVFEVCL-FLYTWAVIHHMLGGIRYLIWDVSLCL 99
SV + ++ W +++H L GIR+L+WD L
Sbjct: 99 PSVVTLTAKYILAWPLVYHSLNGIRHLVWDSGRAL 133
>gi|298369270|ref|ZP_06980588.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria sp.
oral taxon 014 str. F0314]
gi|298283273|gb|EFI24760.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria sp.
oral taxon 014 str. F0314]
Length = 125
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+RP+ + RL VSI+HRI+G ++++ PV+++ + E + R +
Sbjct: 4 KSRPVFLEIPNIRLPIPGIVSILHRISGVILFVMLPVLLYLLSGTLSRESAFETYRVIVS 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS-ILTVLI 121
+ ++ L WA +HH+L G+R+L D L+ A AK+ A+ +LTV++
Sbjct: 64 NPLAKLILIGVLWAYLHHLLAGVRFLFLDAHKGLELNTARNTAKLVFAAALVLTVVL 120
>gi|6649873|gb|AAF21608.1|AF018287_2 SdhC [papaya bunchy top disease rickettsia]
Length = 125
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP SPHL IY+ + +SI+HR+TG ++ ++ W+F + + L
Sbjct: 6 QEIYNKRPTSPHLTIYKPRISSTLSILHRMTGVALFFAVSILA-WWFIFSKFDSNYIQLA 64
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ L + W +H+ GIR+L WD+ K +I S+L ++
Sbjct: 65 NCCCIIKICLILTSFAW--FYHLCNGIRHLFWDIGYGFPIKAVNLTGWSVVICSVLFTIL 122
Query: 122 VWI 124
+WI
Sbjct: 123 LWI 125
>gi|256071967|ref|XP_002572309.1| succinate dehydrogenase [Schistosoma mansoni]
gi|238657465|emb|CAZ28540.1| succinate dehydrogenase, putative [Schistosoma mansoni]
Length = 192
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITG-SVVYLGTPVVVFWFFCIANGEHTLSSLR-CY 63
RP SPHLQ+Y M S +HR TG ++ + + V + FF + + L +R +
Sbjct: 69 EKRPWSPHLQVYSSPLVMRFSFLHRATGIAMAIVWSSVGIGAFFFTGHYDSILDYVRNMH 128
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ SV C F+ + +++H L G+R+L WD ++ K I + +S++ I+
Sbjct: 129 LGTSVIAACKFILCYPLVYHYLNGMRHLAWDYAIGFPIKTCNTTGFIALGSSLVISAILA 188
Query: 124 IIK 126
I+
Sbjct: 189 CIR 191
>gi|2623844|gb|AAB86570.1| unknown [Schistosoma mansoni]
Length = 198
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITG-SVVYLGTPVVVFWFFCIANGEHTLSSLR-CY 63
RP SPHLQ+Y M S +HR TG ++ + + V + FF + + L +R +
Sbjct: 75 EKRPWSPHLQVYSSPLVMRFSFLHRATGIAMAIVWSSVGIGAFFFTGHYDSILDYVRNMH 134
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ SV C F+ + +++H L G+R+L WD ++ K I + +S++ I+
Sbjct: 135 LGTSVIAACKFILCYPLVYHYLNGMRHLAWDYAIGFPIKTCNTTGFIALGSSLVISAILA 194
Query: 124 IIK 126
I+
Sbjct: 195 CIR 197
>gi|91208853|ref|YP_539014.1| succinate dehydrogenase subunit 3 [Physcomitrella patens]
gi|90991393|dbj|BAE93085.1| succinate dehydrogenase subunit 3 [Physcomitrella patens]
Length = 131
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 18/128 (14%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K NRPLSPHL IY+ T SI HRI+G+ + +V F + G+ L+S Y
Sbjct: 1 MKINRPLSPHLTIYKPQLTSTFSIFHRISGAFL---ASMVFFSILFLKIGDLNLTSYYLY 57
Query: 64 MDGSVFEVCLFLYTW-----------AVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKIN 111
F F + W A+ +HM GIR+L+WD+ L+ K+ T +
Sbjct: 58 RYAFSFT---FYFHWLISSVVNFSLLALCYHMSNGIRHLLWDLGFFLELSKVYTSGIIML 114
Query: 112 IIASILTV 119
A+ L V
Sbjct: 115 FCAAFLAV 122
>gi|194290224|ref|YP_002006131.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
sdhd [Cupriavidus taiwanensis LMG 19424]
gi|193224059|emb|CAQ70068.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Cupriavidus taiwanensis LMG 19424]
Length = 136
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
++K RP ++ I YRL VSI+HR++G++++L P V++ F E +
Sbjct: 3 EAVKQARPEFRNIGISQIAKYRLPWAGKVSILHRVSGALMFLLLPFVLYLFEQSITSELS 62
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ + G ++ + W +HH GIR+L+ DV + + K + + A
Sbjct: 63 FAKFSALLSGGFVKLVVLALIWGYLHHFCAGIRFLLLDVHVGVSKPASAKSA 114
>gi|46201871|ref|ZP_00054198.2| COG2009: Succinate dehydrogenase/fumarate reductase, cytochrome b
subunit [Magnetospirillum magnetotacticum MS-1]
Length = 109
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 53/103 (51%)
Query: 22 TMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVI 81
T +SI HRITG + +GT V+ +W A G + + + ++ LF +T A+
Sbjct: 4 TAILSISHRITGVALAVGTIVLAYWLASAAYGPVAYGHAQAVLGSVLGKLVLFGWTAALF 63
Query: 82 HHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+H+ GIR+L WD + A + ++ + A+ L ++ W+
Sbjct: 64 YHLCNGIRHLFWDKGRGYEIAEADKSGRMVVGAAALLTVLAWV 106
>gi|167648795|ref|YP_001686458.1| succinate dehydrogenase, cytochrome b556 subunit [Caulobacter sp.
K31]
gi|167351225|gb|ABZ73960.1| succinate dehydrogenase, cytochrome b556 subunit [Caulobacter sp.
K31]
Length = 135
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RPLSPHLQ++R TM SI+HR +Y+G ++ W +A+G ++ +
Sbjct: 10 ERPLSPHLQVWRWHITMACSILHRGCIFALYVGVLLLAGWGLALASGPDAYAAFTGCLGS 69
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
+ ++ LF T AV+ ++ +R WD+ KIA I +++ ++VW+I
Sbjct: 70 PLGKLVLFGLTVAVLFNIAYTVRQSFWDMGKGFTPKIADMTGACAIAFAVVGAIVVWVIA 129
>gi|66045245|ref|YP_235086.1| succinate dehydrogenase, cytochrome b subunit [Pseudomonas syringae
pv. syringae B728a]
gi|63255952|gb|AAY37048.1| Succinate dehydrogenase, cytochrome b subunit [Pseudomonas syringae
pv. syringae B728a]
Length = 124
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L+ +L T + SI+HRI+G ++++G ++++ E ++ Y
Sbjct: 1 MNSQRPVNLDLRTIKLPVTAYTSILHRISGVILFVGIAIMLYAMDKSLASEEGFGEVKAY 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
M + ++ ++ A+++H++ GIR+LI D + + +KI I S++ +L+
Sbjct: 61 MTSPLAKLIIWGLLSALLYHLVAGIRHLIMDSGVGETLEGGKLGSKIVIAVSVILILLAG 120
Query: 122 VWI 124
VWI
Sbjct: 121 VWI 123
>gi|254480479|ref|ZP_05093726.1| succinate dehydrogenase, cytochrome b556 subunit [marine gamma
proteobacterium HTCC2148]
gi|214039062|gb|EEB79722.1| succinate dehydrogenase, cytochrome b556 subunit [marine gamma
proteobacterium HTCC2148]
Length = 129
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 68/126 (53%), Gaps = 4/126 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
S +K+NRP++ + RL T + SI HR TG ++++G ++++ G + ++
Sbjct: 4 SKVKDNRPVNLDIGTMRLPITAWASITHRATGVILFVGMGILLWLLDTSLAGPDGFAFVQ 63
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKI----NIIASIL 117
+ G V + ++ A+I+H L G+++LI D + + A+I +++ S+L
Sbjct: 64 ESLGGFVAKFVIWGLVTALIYHSLAGVKHLIMDFGVGETMEGGILGARIVIALSVVLSLL 123
Query: 118 TVLIVW 123
TV+ +W
Sbjct: 124 TVIWIW 129
>gi|261364266|ref|ZP_05977149.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria mucosa
ATCC 25996]
gi|288567509|gb|EFC89069.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria mucosa
ATCC 25996]
Length = 125
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RP+ + RL VSI+HRI+G +++ PV+++ + E + R +
Sbjct: 6 RPVFLEIPNIRLPIPGIVSILHRISGVALFVMLPVLLYLLSGTLSRESAFETYRAIVSNP 65
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS-ILTVLI 121
+ ++ L WA +HH+ GIR+L+ D L+ A AK+ A+ +LTV++
Sbjct: 66 LVKLILIGVLWAYLHHLFAGIRFLLLDAHKGLELNTARNTAKLVFAAALVLTVVL 120
>gi|152985839|ref|YP_001349047.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
aeruginosa PA7]
gi|150960997|gb|ABR83022.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
aeruginosa PA7]
Length = 128
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 69/125 (55%), Gaps = 2/125 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++ + RP++ L+ +L T + SI+HRI+G +++LG V++F E ++
Sbjct: 3 KAVNSKRPVNLDLRTIKLPVTAYTSILHRISGVILFLGIAVLLFALDKSLRSEEGFEQVK 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINI-IASILTVL 120
+ + ++ ++ A+++H++ GIR+L+ D + + + +KI I IA +L VL
Sbjct: 63 ACLTSPLAKLVIWGLLSALLYHLVAGIRHLVMDAGVGETLEGGKRGSKIVIAIAVVLIVL 122
Query: 121 I-VWI 124
VW+
Sbjct: 123 AGVWV 127
>gi|150406491|ref|YP_001315099.1| succinate:cytochrome c oxidoreductase subunit 3 [Chlorokybus
atmophyticus]
gi|126507728|gb|ABO15125.1| succinate:cytochrome c oxidoreductase subunit 3 [Chlorokybus
atmophyticus]
Length = 133
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 19/106 (17%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
+RPLSPHL IY+ T +SI HRITG+ ++ T V++ F H L+S Y
Sbjct: 6 HRPLSPHLTIYKPQLTSMLSIFHRITGA--FMATSVLLTIFLLKICNFH-LTSYNFY--- 59
Query: 67 SVFEVCLF-LYTWAVI-----------HHMLGGIRYLIWDVSLCLD 100
+F LF Y W ++ +HM G+R+L WD+ L LD
Sbjct: 60 -IFAFILFSYYKWLILTVLFLLIISLHYHMSNGLRHLTWDLGLSLD 104
>gi|94311422|ref|YP_584632.1| succinate dehydrogenase subunit C [Cupriavidus metallidurans CH34]
gi|93355274|gb|ABF09363.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Cupriavidus metallidurans CH34]
Length = 136
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
++K RP ++ I YRL VSI+HR++G++++L P V++ F E +
Sbjct: 3 EAVKQARPEFRNIGIAQISRYRLPWAGKVSILHRVSGAMMFLLLPFVLYLFEQSVTSELS 62
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ + +V + W +HH GIR+L+ DV + + K + + A
Sbjct: 63 FAKFSALLSNGFIKVVILALIWGYLHHFCAGIRFLLLDVHVGVTKPASAKSA 114
>gi|49077638|gb|AAT49701.1| PA1581 [synthetic construct]
Length = 129
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++ + RP++ L+ +L T + SI+HRI+G +++LG V++F + E ++
Sbjct: 3 KAVNSKRPVNLDLRTIKLPVTAYTSILHRISGVILFLGIAVLLFALDKSLSSEEGFEQVK 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINI-IASILTVL 120
+ + ++ ++ A+++H++ G+R+L+ D + + + +KI I IA +L VL
Sbjct: 63 ACLTSPLAKLVIWGLLSALLYHLVAGVRHLVMDAGVGETLEGGKRGSKIVIAIAVVLIVL 122
Query: 121 I-VWI 124
VW+
Sbjct: 123 AGVWV 127
>gi|58584743|ref|YP_198316.1| succinate dehydrogenase subunit C sdhC [Wolbachia endosymbiont
strain TRS of Brugia malayi]
gi|58419059|gb|AAW71074.1| Succinate dehydrogenase subunit C sdhC [Wolbachia endosymbiont
strain TRS of Brugia malayi]
Length = 125
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 15/128 (11%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC---- 62
+RPLSPHLQIY++ T F SI+HR+TG ++ V++ W+F + L ++C
Sbjct: 3 DRPLSPHLQIYKVQVTNFFSIMHRLTG-ILLFLLLVMLSWYFTLHVYFPELFIVKCLNVL 61
Query: 63 ---YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCL---DKKIATQMAKINIIASI 116
++ V +C +++ H L GIR+L+WD L D + + + +I S
Sbjct: 62 LSTFIAKLVCILCFISFSY----HFLNGIRHLLWDAGFNLEITDVLKSAMLLTVMLILST 117
Query: 117 LTVLIVWI 124
+ L V+I
Sbjct: 118 MAFLFVFI 125
>gi|15596778|ref|NP_250272.1| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa PAO1]
gi|116049526|ref|YP_791670.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
aeruginosa UCBPP-PA14]
gi|218892462|ref|YP_002441329.1| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa LESB58]
gi|254234682|ref|ZP_04928005.1| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa C3719]
gi|254239930|ref|ZP_04933252.1| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa 2192]
gi|296390045|ref|ZP_06879520.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
aeruginosa PAb1]
gi|9947544|gb|AAG04970.1|AE004586_8 succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa PAO1]
gi|115584747|gb|ABJ10762.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
aeruginosa UCBPP-PA14]
gi|126166613|gb|EAZ52124.1| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa C3719]
gi|126193308|gb|EAZ57371.1| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa 2192]
gi|218772688|emb|CAW28473.1| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa LESB58]
Length = 128
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++ + RP++ L+ +L T + SI+HRI+G +++LG V++F + E ++
Sbjct: 3 KAVNSKRPVNLDLRTIKLPVTAYTSILHRISGVILFLGIAVLLFALDKSLSSEEGFEQVK 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINI-IASILTVL 120
+ + ++ ++ A+++H++ G+R+L+ D + + + +KI I IA +L VL
Sbjct: 63 ACLTSPLAKLVIWGLLSALLYHLVAGVRHLVMDAGVGETLEGGKRGSKIVIAIAVVLIVL 122
Query: 121 I-VWI 124
VW+
Sbjct: 123 AGVWV 127
>gi|91077184|ref|XP_972464.1| PREDICTED: similar to succinate dehydrogenase [Tribolium castaneum]
gi|270002817|gb|EEZ99264.1| hypothetical protein TcasGA2_TC000993 [Tribolium castaneum]
Length = 172
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-EHTLSSLR 61
++K RP SPHL IY T +SI HR TG ++ T V+ + + E L++L
Sbjct: 48 NMKLGRPQSPHLTIYAPQMTSMLSISHRATGMILTFYTIVLGTGAIILPDSIETYLNALE 107
Query: 62 CY-MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
Y + G V V F+ + + +H GIR+L WD+ L L K
Sbjct: 108 EYHVGGVVLSVGKFILAFPLTYHYWNGIRHLAWDIGLFLSLK 149
>gi|171463739|ref|YP_001797852.1| succinate dehydrogenase, cytochrome b556 subunit [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171193277|gb|ACB44238.1| succinate dehydrogenase, cytochrome b556 subunit [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 139
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 19/120 (15%)
Query: 1 MSSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
++K +RP+ ++ + YRL VSI+HRI G+ ++L P +++ F +
Sbjct: 5 QQNVKKDRPVYRNIGLAQLIKYRLPWASKVSILHRIGGAALFLMLPFILYLF------DQ 58
Query: 56 TLSSLRCYMDGSVFE-------VCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+L+S Y F +CL L W +HH GIRYL+ D+ + +++ A + A
Sbjct: 59 SLASKLSYQKFQAFTGNILVKIICLGL-IWCFLHHFCAGIRYLLLDLEIGVERSEANRSA 117
>gi|99035092|ref|ZP_01314880.1| hypothetical protein Wendoof_01000286 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 125
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 60/99 (60%), Gaps = 6/99 (6%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
++RPLSPHLQIY++ T F SI+HR+TG ++ +++ W+F + L +R Y++
Sbjct: 2 SDRPLSPHLQIYKVQVTSFFSIMHRLTG-ILLFLLLMILSWYFILHVYFPELLIVR-YLN 59
Query: 66 GSVF----EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
+F ++ L + ++H L GIR+L+ DV L L+
Sbjct: 60 ALLFTPVAKLAYVLCFISFVYHFLNGIRHLLRDVGLNLE 98
>gi|73542011|ref|YP_296531.1| succinate dehydrogenase subunit C [Ralstonia eutropha JMP134]
gi|72119424|gb|AAZ61687.1| succinate dehydrogenase subunit C [Ralstonia eutropha JMP134]
Length = 136
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YRL VSI+HR++G++++L P V++ F E + + + G ++ +
Sbjct: 23 YRLPWAGKVSILHRVSGAMMFLLLPFVLYLFEQSITSELSFAKFSALLSGGFVKLVVLAL 82
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
W +HH GIR+L+ DV + + K + + A
Sbjct: 83 IWGYLHHFCAGIRFLLLDVHVGVSKPASAKSA 114
>gi|325303890|tpg|DAA34619.1| TPA_inf: truncated succinate dehydrogenase cytochrome b subunit
[Amblyomma variegatum]
Length = 173
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 12/98 (12%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFW-----FFCIANGEHTLSSLR 61
NRPLSPHL IY+ TM +S+ HR+TG +G V+ C + H + +LR
Sbjct: 53 NRPLSPHLGIYKQQITMVLSLTHRVTG----IGMTAFVYGMGLMPLVCSHHFPHYVEALR 108
Query: 62 CYMDGSV--FEVCLFLYTWAVIHHMLGGIRYLIWDVSL 97
V F V L L +A+ +H G+R++ WD+ L
Sbjct: 109 AMEISPVLTFPVKLGL-AFALCYHTFNGVRHMAWDLGL 145
>gi|307609335|emb|CBW98819.1| succinate dehydrogenase, cytochrome b556 subunit [Legionella
pneumophila 130b]
Length = 111
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 21 PTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAV 80
P SI+HR++G +++L P V+F C E + + + + +++ L+ + ++
Sbjct: 5 PMAIASILHRVSGVLIFLLFPFVLFILSCSLQSEESFAQTKIILANPYYKLLLWAFGASM 64
Query: 81 IHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
I+H++ GIR+LI D+ + A +M+ ++IIA
Sbjct: 65 IYHVIAGIRHLIMDMGFGESLR-AGRMSAVSIIA 97
>gi|294340933|emb|CAZ89328.1| putative Succinate dehydrogenase cytochrome b556 subunit
(Cytochrome b-556) (sdhC) [Thiomonas sp. 3As]
Length = 137
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YRL VSI+HRI+G+V++L P+V++ F + +++ ++ ++ L
Sbjct: 24 YRLPLAGLVSILHRISGAVMFLALPLVLWAFDDSLRSADSHAAITQFLSHWFVKLILLGL 83
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
WA++HH++ G+R+L D + K Q+A I S+
Sbjct: 84 FWALMHHLVAGVRHLWMDAFHAVSKAQGLQLALITFAVSL 123
>gi|319786900|ref|YP_004146375.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudoxanthomonas
suwonensis 11-1]
gi|317465412|gb|ADV27144.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudoxanthomonas
suwonensis 11-1]
Length = 130
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
RPLSPHLQ+YR M SI+HR TG V+ G V+ + G + + +
Sbjct: 3 SRERPLSPHLQVYRWQVQMVTSILHRATGIVLAGGALVLAGGLLALMVGPESWACFTGHA 62
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+V L +TWA +H+ GIR++ D + + + ++I S++ IVW
Sbjct: 63 GAWYGKVFLLGWTWAFAYHLCNGIRHVAQDFAHGYAIPDFVRNSWLSIAGSLVITAIVWA 122
Query: 125 IK 126
+
Sbjct: 123 LA 124
>gi|332526164|ref|ZP_08402299.1| succinate dehydrogenase, cytochrome b556 subunit [Rubrivivax
benzoatilyticus JA2]
gi|332110004|gb|EGJ10632.1| succinate dehydrogenase, cytochrome b556 subunit [Rubrivivax
benzoatilyticus JA2]
Length = 140
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 5 KNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
RP+ ++ I YRL FVSI+HRI+G+++++ P V++ F E + +
Sbjct: 3 STQRPVYRNIHISQIASYRLPLAGFVSILHRISGALMFVLLPFVIWLFDNSLTSEISFDT 62
Query: 60 LRCYMDGSVFEVCLFLYT-------WAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINI 112
V V FL WA +HH++ GIRYL DVS K+ A + +
Sbjct: 63 FTSAFVAGVGFVPAFLVKLVVLALIWAYLHHLIAGIRYLWMDVSHAYSKQSGRSSAIVTL 122
Query: 113 IASI-LTVLI 121
S+ LT L+
Sbjct: 123 ALSLPLTALL 132
>gi|313668609|ref|YP_004048893.1| succinate dehydrogenase cytochrome B subunit [Neisseria lactamica
ST-640]
gi|313006071|emb|CBN87532.1| putative succinate dehydrogenase cytochrome B subunit [Neisseria
lactamica 020-06]
Length = 125
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RP+ L RL VSI+HRI+G +++ P ++++ + E + R +
Sbjct: 6 RPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVSHP 65
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS-ILTVLI 121
+ ++ L WA +HH L GIR+L D L+ A AK+ A+ +LTV++
Sbjct: 66 LVKLVLIGVLWAYLHHSLAGIRFLFLDAHKGLELNTARNTAKLVFTAALVLTVVL 120
>gi|224009964|ref|XP_002293940.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970612|gb|EED88949.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 191
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
K RP+SPH+ IY SI R+TG ++ G + +G LS+++C
Sbjct: 65 KTRRPVSPHVTIYSFPVCALSSIATRVTGCILSFGAAGLGIVEIFGGSGA-ALSTMQCIG 123
Query: 65 DGSVFEVCLFLY------TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINII-ASIL 117
G + LF+ + +H LGG+R+L+WD S + + + A ++ AS+L
Sbjct: 124 SGEMVGGALFVAGAKFSVAFPFAYHYLGGLRHLVWDNSPEMLTNVDVEKASYGLLGASVL 183
Query: 118 TVLIVWII 125
+ ++
Sbjct: 184 LSSVAAVV 191
>gi|269214842|ref|ZP_05987260.2| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
lactamica ATCC 23970]
gi|269208913|gb|EEZ75368.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
lactamica ATCC 23970]
Length = 141
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RP+ L RL VSI+HRI+G +++ P ++++ + E + R +
Sbjct: 22 RPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVSHP 81
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS-ILTVLI 121
+ ++ L WA +HH L GIR+L D L+ A AK+ A+ +LTV++
Sbjct: 82 LVKLVLIGVLWAYLHHSLAGIRFLFLDAHKGLELNTARNTAKLVFTAALVLTVVL 136
>gi|91789451|ref|YP_550403.1| succinate dehydrogenase subunit C [Polaromonas sp. JS666]
gi|91698676|gb|ABE45505.1| succinate dehydrogenase subunit C [Polaromonas sp. JS666]
Length = 148
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 14 LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCL 73
L YRL VSI+HRI+G++++L P +++ F + E + S + + + +
Sbjct: 24 LPSYRLPLAGLVSILHRISGAIMFLLMPFIIWMFDTSISSEISFSRFKSAFNAGMLGLPG 83
Query: 74 FLYT-------WAVIHHMLGGIRYLIWDVS-LCLDKKIATQMAKINIIASILTVLIV 122
FL+ WA +HH + G+R+L D S + K+ A + + SI L++
Sbjct: 84 FLWKLVALALIWAYLHHFIAGLRHLWMDTSHAAVSKEFGKSSAAVTLAVSIGLTLVL 140
>gi|294671245|ref|ZP_06736098.1| hypothetical protein NEIELOOT_02955 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307073|gb|EFE48316.1| hypothetical protein NEIELOOT_02955 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 127
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 6 NNRPLSPHLQIY-RLIPTM-FVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
RP+ LQ+ R +P VSI+HR +G ++++ PV++ + S +
Sbjct: 4 KKRPVFLDLQVLVRHLPVPGIVSILHRASGVILFIMIPVLLMLLNGSLSSGEDFESYKAV 63
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
D + ++ L WA +HH+ GIR+L+ D L+ + + AK+ +I S+ L++
Sbjct: 64 ADNPLVKLILIGVLWAFLHHLCAGIRFLLLDAHQGLELQTCRKTAKLVLIISLSLTLVLG 123
Query: 124 I 124
+
Sbjct: 124 V 124
>gi|22550363|ref|NP_689350.1| succinate:cytochrome c oxidoreductase subunit 3 [Chaetosphaeridium
globosum]
gi|22417029|gb|AAM96628.1|AF494279_33 succinate:cytochrome c oxidoreductase subunit 3 [Chaetosphaeridium
globosum]
Length = 129
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWF---FCIAN----GEHT 56
+K NRPLSPHL +Y+ T +SI HRI+G+ +L V+ F C N +
Sbjct: 1 MKINRPLSPHLTVYKPQLTSTLSIFHRISGA--FLAFFVLSFALSMPICQINLSFYSFYK 58
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
+ C+ VF L L ++V +HM GIR+L+WD L LD
Sbjct: 59 IWFYLCHDKLWVFLTVLNLAFFSVCYHMSNGIRHLLWDYGLFLD 102
>gi|73535958|pdb|1ZOY|C Chain C, Crystal Structure Of Mitochondrial Respiratory Complex Ii
From Porcine Heart At 2.4 Angstroms
gi|73535962|pdb|1ZP0|C Chain C, Crystal Structure Of Mitochondrial Respiratory Complex Ii
Bound With 3-Nitropropionate And
2-Thenoyltrifluoroacetone
gi|322812260|pdb|3ABV|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide
gi|322812268|pdb|3AE1|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Phenyl-2-(Trifluoromethyl)-Benzamide
gi|322812272|pdb|3AE2|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Hydroxy-N-Phenyl-Benzamide
gi|322812276|pdb|3AE3|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Nitro-N-Phenyl-Benzamide
gi|322812280|pdb|3AE4|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Methyl-Benzamide
gi|322812284|pdb|3AE5|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Methyl-N-(3-Isopropoxy-Phenyl)-Benzamide
gi|322812288|pdb|3AE6|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-(3-Isopropoxy-Phenyl)-Phthalamicacid
gi|322812292|pdb|3AE7|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(3-Isopropoxy-Phenyl)-Benzamide
gi|322812296|pdb|3AE8|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Isopropoxy-Phenyl)-2-Trifluoromethylbenzamide
gi|322812300|pdb|3AE9|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Pentafluorophenyloxy-Phenyl)-2-Trifluoromethyl-
Benzamide
gi|322812304|pdb|3AEA|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Dimethylaminomethyl-Phenyl)-2-Trifluoromethyl-
Benzamide
gi|322812308|pdb|3AEB|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide
gi|322812312|pdb|3AEC|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(1-Methylethyl)-Benzamid
gi|322812316|pdb|3AED|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Phenyl-Benzamide
gi|322812320|pdb|3AEE|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With Atpenin A5
gi|322812324|pdb|3AEF|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii With An Empty Quinone-Binding Pocket
gi|322812328|pdb|3AEG|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Biphenyl-3-Yl-2-Iodo-Benzamide
Length = 140
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSS 59
++ +NRPLSPH+ IYR M +SI HR TG + L V +F + N E L
Sbjct: 16 NLGSNRPLSPHITIYRWSLPMAMSICHRGTG--IALSAGVSLFGLSALLLPGNFESHLEL 73
Query: 60 LRCYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
++ G ++ F + +++H GIR+LIWD+ L Q+ + ++ ILT
Sbjct: 74 VKSLCLGPTLIYTAKFGIVFPLMYHTWNGIRHLIWDLGKGLT---IPQLTQSGVVVLILT 130
Query: 119 VL 120
VL
Sbjct: 131 VL 132
>gi|325982599|ref|YP_004295001.1| succinate dehydrogenase, cytochrome b556 subunit [Nitrosomonas sp.
AL212]
gi|325532118|gb|ADZ26839.1| succinate dehydrogenase, cytochrome b556 subunit [Nitrosomonas sp.
AL212]
Length = 129
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 65/115 (56%), Gaps = 6/115 (5%)
Query: 14 LQIYRLIPTMFVSIVHRITGSVVYL-GTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVC 72
L+I + IP + VSI+HRI+G +++ G P+++ + L+ Y++ + ++
Sbjct: 16 LKIRQPIPAV-VSILHRISGVLLFFPGIPLLLCGLQLLLESPQGFEILQGYINNPMIKLM 74
Query: 73 LFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA----SILTVLIVW 123
L L W +HH+ GIR+L+ D+ + + + A +K+ +IA + LT L++W
Sbjct: 75 LLLPLWFFLHHLCAGIRHLLLDMQVGIALEQARTGSKLVLIAGFALTTLTGLVLW 129
>gi|261377703|ref|ZP_05982276.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria cinerea
ATCC 14685]
gi|269145976|gb|EEZ72394.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria cinerea
ATCC 14685]
Length = 125
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+RP+ L RL VSI+HRI+G +++ P ++++ + E + R +
Sbjct: 4 KSRPVYLDLPKIRLPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRSIIS 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ ++ L WA +HH GIR+L D L+ A AK + AS L + +V
Sbjct: 64 HPLVKLILLGVLWAYLHHFFAGIRFLFLDAHKGLELNTARNTAK-AVFASALVLTVV 119
>gi|38638302|ref|NP_943707.1| succinate:cytochrome c oxidoreductase subunit 3 [Chara vulgaris]
gi|32966616|gb|AAP92199.1| succinate:cytochrome c oxidoreductase subunit 3 [Chara vulgaris]
Length = 131
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVV-FWFFCIANGEHTLSSLR- 61
+K NRPLSPH+ IY+ T SI HRI G+ +L T V+ FF I T
Sbjct: 1 MKINRPLSPHITIYKPQLTSTFSIFHRICGA--FLATTVLFSILFFKICELSLTFYHFYL 58
Query: 62 ------CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIA 114
CY +F + L A+ +HM GIR+L+WD+ LD K+ T + A
Sbjct: 59 FVFYFICYFHWLIFSL-FNLAFLALCYHMSNGIRHLLWDLGHSLDLSKVYTSGTIMFFFA 117
Query: 115 SILTVL 120
+ L L
Sbjct: 118 ACLVTL 123
>gi|319792256|ref|YP_004153896.1| succinate dehydrogenase, cytochrome b556 subunit [Variovorax
paradoxus EPS]
gi|315594719|gb|ADU35785.1| succinate dehydrogenase, cytochrome b556 subunit [Variovorax
paradoxus EPS]
Length = 148
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 8/117 (6%)
Query: 14 LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC-------YMDG 66
L YRL P VSI+HR++G +++L P ++ F + +++ + + ++ G
Sbjct: 24 LTTYRLPPAGIVSILHRVSGVLMFLLLPFTIWMFDTSLSSDYSFARFKAAFNSGLGFVPG 83
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMAKINIIASILTVLIV 122
F++ WA +HH + G+R+L DVS + K+ A + + S+L +++
Sbjct: 84 WFFKLVALALIWAYLHHFIAGLRHLWMDVSHAAVTKEFGHTSAVVTLALSVLLTVVL 140
>gi|290463150|sp|D0VWV4|C560_PIG RecName: Full=Succinate dehydrogenase cytochrome b560 subunit,
mitochondrial; AltName: Full=Succinate-ubiquinone
oxidoreductase cytochrome B large subunit; Short=CYBL;
Flags: Precursor
Length = 169
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLS 58
++ +NRPLSPH+ IYR M +SI HR TG + L V +F + N E L
Sbjct: 44 KNLGSNRPLSPHITIYRWSLPMAMSICHRGTG--IALSAGVSLFGLSALLLPGNFESHLE 101
Query: 59 SLRCYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASIL 117
++ G ++ F + +++H GIR+LIWD+ L Q+ + ++ IL
Sbjct: 102 LVKSLCLGPTLIYTAKFGIVFPLMYHTWNGIRHLIWDLGKGLT---IPQLTQSGVVVLIL 158
Query: 118 TVL 120
TVL
Sbjct: 159 TVL 161
>gi|308072487|dbj|BAJ22105.1| succinate dehydrogenase cytochrome subunit 3 [Cycas taitungensis]
Length = 130
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
NRPLSPHL IY+ T SI+HRI+G+ +L T V+ FC+ G + + Y
Sbjct: 4 NRPLSPHLTIYKPQLTSTFSILHRISGA--FLATMVLFSLLFCLEIGLISFTYGNFYQFS 61
Query: 67 SVFEVCLF------LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
F L A+ +HM G+R+L WD+ L+ + ++++
Sbjct: 62 FSVNFPKFILGLVNLTLLALCYHMSNGVRHLWWDLGFFLEFSLIIRISE 110
>gi|15676841|ref|NP_273986.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis MC58]
gi|121634750|ref|YP_974995.1| putative succinate dehydrogenase cytochrome B subunit [Neisseria
meningitidis FAM18]
gi|161869861|ref|YP_001599030.1| succinate dehydrogenase cytochrome B subunit [Neisseria
meningitidis 053442]
gi|218768032|ref|YP_002342544.1| putative succinate dehydrogenase cytochrome B subunit [Neisseria
meningitidis Z2491]
gi|254804831|ref|YP_003083052.1| succinate dehydrogenase cytochrome b-556 subunit [Neisseria
meningitidis alpha14]
gi|7226187|gb|AAF41354.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis MC58]
gi|120866456|emb|CAM10202.1| putative succinate dehydrogenase cytochrome B subunit [Neisseria
meningitidis FAM18]
gi|121052040|emb|CAM08349.1| putative succinate dehydrogenase cytochrome B subunit [Neisseria
meningitidis Z2491]
gi|161595414|gb|ABX73074.1| succinate dehydrogenase cytochrome B subunit [Neisseria
meningitidis 053442]
gi|254668373|emb|CBA05461.1| succinate dehydrogenase cytochrome b-556 subunit [Neisseria
meningitidis alpha14]
gi|254671329|emb|CBA08736.1| succinate dehydrogenase cytochrome b-556 subunit [Neisseria
meningitidis alpha153]
gi|261392704|emb|CAX50277.1| succinate dehydrogenase cytochrome b-556 subunit [Neisseria
meningitidis 8013]
gi|316985351|gb|EFV64300.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis H44/76]
gi|319410281|emb|CBY90623.1| succinate dehydrogenase cytochrome b-556 subunit [Neisseria
meningitidis WUE 2594]
gi|325128093|gb|EGC50988.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis N1568]
gi|325132169|gb|EGC54865.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis M6190]
gi|325134135|gb|EGC56787.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis M13399]
gi|325136116|gb|EGC58725.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis M0579]
gi|325138101|gb|EGC60674.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis ES14902]
gi|325140162|gb|EGC62689.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis CU385]
gi|325142230|gb|EGC64648.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis 961-5945]
gi|325144260|gb|EGC66565.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis M01-240013]
gi|325198181|gb|ADY93637.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis G2136]
gi|325200367|gb|ADY95822.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis H44/76]
gi|325204020|gb|ADY99473.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis M01-240355]
gi|325206221|gb|ADZ01674.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis M04-240196]
Length = 125
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RP+ L RL VSI+HRI+G +++ P ++++ + E + R +
Sbjct: 6 RPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVSHP 65
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ ++ L WA +HH L GIR+L D L+ A AK + AS L + +V
Sbjct: 66 LVKLVLIGVLWAYLHHSLAGIRFLFLDAHKGLELNTARNTAK-AVFASALVLTVV 119
>gi|325202264|gb|ADY97718.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis M01-240149]
gi|325207983|gb|ADZ03435.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis NZ-05/33]
Length = 125
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RP+ L RL VSI+HRI+G +++ P ++++ + E + R +
Sbjct: 6 RPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVSHP 65
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ ++ L WA +HH L GIR+L D L+ A AK + AS L + +V
Sbjct: 66 LVKLVLIGVLWAYLHHSLAGIRFLFLDAHKGLELNTARNTAK-AVFASALVLTVV 119
>gi|59801319|ref|YP_208031.1| putative fumarate reductase cytochrome b large subunit [Neisseria
gonorrhoeae FA 1090]
gi|194098442|ref|YP_002001501.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
NCCP11945]
gi|239998841|ref|ZP_04718765.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
35/02]
gi|240014244|ref|ZP_04721157.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
DGI18]
gi|240016680|ref|ZP_04723220.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
FA6140]
gi|240080869|ref|ZP_04725412.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
FA19]
gi|240112767|ref|ZP_04727257.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
MS11]
gi|240115518|ref|ZP_04729580.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
PID18]
gi|240117813|ref|ZP_04731875.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
PID1]
gi|240121807|ref|ZP_04734769.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
PID24-1]
gi|240123368|ref|ZP_04736324.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
PID332]
gi|240125616|ref|ZP_04738502.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
SK-92-679]
gi|240128072|ref|ZP_04740733.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
SK-93-1035]
gi|254493627|ref|ZP_05106798.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
1291]
gi|260440671|ref|ZP_05794487.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
DGI2]
gi|268594684|ref|ZP_06128851.1| succinate dehydrogenase [Neisseria gonorrhoeae 35/02]
gi|268596986|ref|ZP_06131153.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
FA19]
gi|268598835|ref|ZP_06133002.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
MS11]
gi|268601193|ref|ZP_06135360.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
PID18]
gi|268603513|ref|ZP_06137680.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
PID1]
gi|268681993|ref|ZP_06148855.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
PID332]
gi|268684205|ref|ZP_06151067.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
SK-92-679]
gi|268686461|ref|ZP_06153323.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
SK-93-1035]
gi|291043980|ref|ZP_06569696.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
DGI2]
gi|293399179|ref|ZP_06643344.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
gonorrhoeae F62]
gi|59718214|gb|AAW89619.1| putative fumarate reductase cytochrome b large subunit [Neisseria
gonorrhoeae FA 1090]
gi|193933732|gb|ACF29556.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
NCCP11945]
gi|226512667|gb|EEH62012.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
1291]
gi|268548073|gb|EEZ43491.1| succinate dehydrogenase [Neisseria gonorrhoeae 35/02]
gi|268550774|gb|EEZ45793.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
FA19]
gi|268582966|gb|EEZ47642.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
MS11]
gi|268585324|gb|EEZ50000.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
PID18]
gi|268587644|gb|EEZ52320.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
PID1]
gi|268622277|gb|EEZ54677.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
PID332]
gi|268624489|gb|EEZ56889.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
SK-92-679]
gi|268626745|gb|EEZ59145.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
SK-93-1035]
gi|291012443|gb|EFE04432.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
DGI2]
gi|291610593|gb|EFF39703.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
gonorrhoeae F62]
gi|317164128|gb|ADV07669.1| putative fumarate reductase cytochrome b large subunit [Neisseria
gonorrhoeae TCDC-NG08107]
Length = 125
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RP+ L RL VSI+HRI+G +++ P ++++ + E + R +
Sbjct: 6 RPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVSHP 65
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ ++ L WA +HH L GIR+L D L+ A AK + AS L + +V
Sbjct: 66 LVKLVLIGILWAYLHHSLAGIRFLFLDAHKGLELNTARNTAK-AVFASALVLTVV 119
>gi|304387747|ref|ZP_07369927.1| succinate dehydrogenase cytochrome b558 subunit [Neisseria
meningitidis ATCC 13091]
gi|304338223|gb|EFM04353.1| succinate dehydrogenase cytochrome b558 subunit [Neisseria
meningitidis ATCC 13091]
gi|308389613|gb|ADO31933.1| putative succinate dehydrogenase cytochrome B subunit [Neisseria
meningitidis alpha710]
Length = 141
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RP+ L RL VSI+HRI+G +++ P ++++ + E + R +
Sbjct: 22 RPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVSHP 81
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ ++ L WA +HH L GIR+L D L+ A AK + AS L + +V
Sbjct: 82 LVKLVLIGVLWAYLHHSLAGIRFLFLDAHKGLELNTARNTAK-AVFASALVLTVV 135
>gi|163856130|ref|YP_001630428.1| succinate dehydrogenase cytochrome b-556 subunit, transmembrane
component [Bordetella petrii DSM 12804]
gi|163259858|emb|CAP42159.1| Succinate dehydrogenase cytochrome b-556 subunit, transmembrane
component [Bordetella petrii]
Length = 137
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFC--IANGEHTLSSLRCYMDGSVFEVCLF 74
YRL +SI+HR++G++++L P+V+ F +A+ E + + + Y + ++ L
Sbjct: 23 YRLPLAGKLSILHRVSGALLFLCLPLVILPLFAASVASPE-SYAQVAQYAGNPLVKLVLL 81
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
+ W +HH GIRYL+ D+ + +DK A + A + + L + +V+ +K
Sbjct: 82 VLVWGYLHHFCAGIRYLVLDLHIGIDKVSAQKSAGV-VFGVSLALTLVFALK 132
>gi|111073627|emb|CAL29489.1| SdhC; succinate dehydrogenase b-type cytochrome subunit [Wolbachia
endosymbiont of Onchocerca volvulus]
Length = 125
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 7/118 (5%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL---SSLRC 62
++RPLSPHLQIY++ T SI+HR+TG ++ V++ W+F + L L
Sbjct: 2 SDRPLSPHLQIYKIQITNLFSIIHRLTG-ILLFLLLVMLSWYFILHVYFPKLFIVKYLNV 60
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + ++ L ++H GIR+L+WDV L T ++K I+ +++ +L
Sbjct: 61 LLSTPIAKLAYVLCFIGFLYHFFNGIRHLLWDVGFNLR---ITDVSKSAILLTVMLLL 115
>gi|28869397|ref|NP_792016.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. tomato str. DC3000]
gi|28852638|gb|AAO55711.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. tomato str. DC3000]
gi|330875700|gb|EGH09849.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. morsprunorum str. M302280PT]
gi|331018601|gb|EGH98657.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. lachrymans str. M302278PT]
Length = 124
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L+ +L T + SI+HRI+G ++++G ++++ E ++
Sbjct: 1 MNSQRPVNLDLRTIKLPVTAYTSILHRISGVILFVGIAIMLYAMDKSLASEEGFGEVKAC 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
+ + ++ ++ A+++HM+ GIR+LI D + + +KI I S++ +L+
Sbjct: 61 LTSPLAKLIIWGLLSALLYHMVAGIRHLIMDTGVGETLEGGKLGSKIVIAVSVVLILLAG 120
Query: 122 VWI 124
VWI
Sbjct: 121 VWI 123
>gi|308323411|gb|ADO28842.1| mitochondrial succinate dehydrogenase cytochrome b560 subunit
[Ictalurus punctatus]
Length = 166
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-EHTLSSLRCY-M 64
NRPLSPH+ IYR M +SI HR TG V+ G + + L + + M
Sbjct: 46 NRPLSPHITIYRWSVPMMMSITHRGTGVVLSAGISAFAAAALVLPGSFPYYLDLVHSFSM 105
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
++ F ++ V +H GIR+L+WDV
Sbjct: 106 GPALITTAKFALSFPVAYHTYNGIRHLMWDVG 137
>gi|187477680|ref|YP_785704.1| succinate dehydrogenase cytochrome b-556 subunit [Bordetella avium
197N]
gi|115422266|emb|CAJ48790.1| succinate dehydrogenase cytochrome b-556 subunit [Bordetella avium
197N]
Length = 137
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 12 PHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFC--IANGEHTLSSLRCYMDGSVF 69
P + YRL +SI+HR +G++++L P+V+ F +A+ E + + + Y +
Sbjct: 18 PQILSYRLPLAGKLSILHRASGALLFLCLPLVIVPLFAASVASPE-SFAQVAQYAGNPLI 76
Query: 70 EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
++ L W +HH GIRYL D+ + +DK + + A + S+L L+
Sbjct: 77 KIVLLALIWGYLHHFCAGIRYLALDLHIGIDKAASRKSAAAVFVVSLLLTLV 128
>gi|296136777|ref|YP_003644019.1| succinate dehydrogenase, cytochrome b556 subunit [Thiomonas
intermedia K12]
gi|295796899|gb|ADG31689.1| succinate dehydrogenase, cytochrome b556 subunit [Thiomonas
intermedia K12]
Length = 137
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YRL VSI+HRI+G+V++L P+V++ F + ++ ++ ++ L
Sbjct: 24 YRLPLAGLVSILHRISGAVMFLALPLVLWAFDDSLRSADSHVAITQFLSHWFVKLILLGL 83
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
WA++HH++ G+R+L D + K Q+A I S+
Sbjct: 84 FWALMHHLVAGVRHLWMDAFHAVSKAQGLQLALITFAVSL 123
>gi|237653215|ref|YP_002889529.1| succinate dehydrogenase, cytochrome b556 subunit [Thauera sp. MZ1T]
gi|237624462|gb|ACR01152.1| succinate dehydrogenase, cytochrome b556 subunit [Thauera sp. MZ1T]
Length = 129
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 1 MSSIKNNRPLSPHLQIY--RLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLS 58
MS + +P +L + RL VSI+HRI+G ++L P +++ T
Sbjct: 1 MSEVTARKPRPKYLALNEIRLPLPGIVSILHRISGVGIFLMLPFLLYLLDRSLGSPETFE 60
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
+ +D ++ LF WA +HH GIR+L+ D+ L+ + A + +KI +I S+
Sbjct: 61 TFAAVVDNWFIKLVLFGLLWAYLHHFCAGIRFLLLDLHKGLELEEARKSSKIVLIVSLTL 120
Query: 119 VLIVWII 125
LI+ ++
Sbjct: 121 TLIIGVV 127
>gi|332373648|gb|AEE61965.1| unknown [Dendroctonus ponderosae]
Length = 176
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 48/103 (46%), Gaps = 26/103 (25%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITG------------SVVYLGTPVVVFWFFCIANGEH 55
RP SPHL IY+ T +SI HR TG + VYL P+ EH
Sbjct: 55 RPQSPHLTIYKPQLTSMLSISHRATGMVLTGYTVLFSMAAVYLDCPL-----------EH 103
Query: 56 TLSSLRCYM--DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
+ LRC GS++ + FL + + +H GIR+LIWD
Sbjct: 104 YIEQLRCAEIGFGSIYAL-KFLIAFPLTYHFWNGIRHLIWDTG 145
>gi|270157997|ref|ZP_06186654.1| succinate dehydrogenase cytochrome b556 subunit [Legionella
longbeachae D-4968]
gi|289163737|ref|YP_003453875.1| succinate dehydrogenase, cytochrome b556 subunit [Legionella
longbeachae NSW150]
gi|269990022|gb|EEZ96276.1| succinate dehydrogenase cytochrome b556 subunit [Legionella
longbeachae D-4968]
gi|288856910|emb|CBJ10724.1| succinate dehydrogenase, cytochrome b556 subunit [Legionella
longbeachae NSW150]
Length = 124
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 52/93 (55%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RP++ L + P SI+HRI+G V++L P+++F + E ++
Sbjct: 1 MNKKRPVNLDLVSLKYPPMAIASILHRISGVVLFLLLPIMLFIWGQSVQSEEAFLHVKNL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
+ S +++ ++ + A+I+H+L GIR+L+ D+
Sbjct: 61 LSQSCYKMVVWAFGSAMIYHLLAGIRHLLMDIG 93
>gi|217968584|ref|YP_002353818.1| succinate dehydrogenase, cytochrome b556 subunit [Thauera sp. MZ1T]
gi|217505911|gb|ACK52922.1| succinate dehydrogenase, cytochrome b556 subunit [Thauera sp. MZ1T]
Length = 128
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 25 VSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHM 84
SI HR++G ++++ PV+ E +S+R + + V + WA+ HH+
Sbjct: 25 ASIAHRVSGVLLFIALPVLAALLHASLRSEADFASVRGLLSSPLSLVVAGVLAWALAHHV 84
Query: 85 LGGIRYLIWDVSLCLDKKIATQMAK 109
L GIR+L+ DV + + + A A+
Sbjct: 85 LAGIRHLLMDVGIGSELERARASAR 109
>gi|50120296|ref|YP_049463.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Pectobacterium atrosepticum SCRI1043]
gi|49610822|emb|CAG74267.1| succinate dehydrogenase cytochrome b-556 subunit [Pectobacterium
atrosepticum SCRI1043]
Length = 129
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
S+K RP++ LQ + T SI+HR++G + ++ ++++ + E
Sbjct: 3 KSVKKQRPVNLELQTIQFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSEEGFLRAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-----LCLDKKIATQMAKINIIASI 116
MD + + ++ A+ +H++GGIR+L+ D L K+ A I ++ SI
Sbjct: 63 EIMDSFIVKFIVWGILVALAYHIVGGIRHLLMDFGYIEEDLAAGKRSANLSFIITVVLSI 122
Query: 117 LTVLIVW 123
L ++VW
Sbjct: 123 LAGVLVW 129
>gi|238898940|ref|YP_002924622.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|229466700|gb|ACQ68474.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 126
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
K RP++ L +R T SI+HRI+G +++ V+ + +
Sbjct: 3 KKQRPINLDLMTFRFPLTAIASILHRISGVIIFFAVGCFVWLLGLSLSSPEGFIKASTII 62
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK--KIATQMAK----INIIASILT 118
D + ++ L+ + A+ +H+LGGIR+L+ D C+++ K+ + A+ I ++ SIL
Sbjct: 63 DYFLIKLILWGFLTALFYHLLGGIRHLLMDFG-CIEENLKLGIRSAQVVMVITVLLSILV 121
Query: 119 VLIVW 123
+I+W
Sbjct: 122 GIIIW 126
>gi|303319777|ref|XP_003069888.1| Succinate dehydrogenase cytochrome b subunit family protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240109574|gb|EER27743.1| Succinate dehydrogenase cytochrome b subunit family protein
[Coccidioides posadasii C735 delta SOWgp]
Length = 193
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPV-VVFWFFCIANGEHTLSSLRCYMD 65
NRP+SPHL IYR + ++S ++RITGSV+ G V + A G H S+
Sbjct: 70 NRPVSPHLTIYRPQISWYLSALNRITGSVLSGGLYVFATAYLVAPAIGWHLESASLAAAF 129
Query: 66 GSVFEVCLFLYTWAV----IHHMLGGIRYLIWDVSLCLDKK 102
G++ F V H + G+R+LIWD+ L K
Sbjct: 130 GALPLAAKFAIKLGVAMPFTFHCMNGVRHLIWDLGKKLSNK 170
>gi|332992984|gb|AEF03039.1| succinate dehydrogenase, cytochrome b subunit [Alteromonas sp. SN2]
Length = 124
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 55/109 (50%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ L + P SI+HR+TG ++ V++ + + ++++
Sbjct: 1 MKKQRPVNLELNTIKFPPAAISSILHRVTGVAMFFALLFVIWAWAVSVSSPEGFANVQAM 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINI 112
MDG + +V A+ +H+LGG+R+++ D+ + + AKI I
Sbjct: 61 MDGIIGKVIAIGTLSALTYHILGGLRHVVMDLGHWEELESGNLSAKIAI 109
>gi|320034179|gb|EFW16124.1| succinate dehydrogenase [Coccidioides posadasii str. Silveira]
Length = 186
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPV-VVFWFFCIANGEHTLSSLRCYMD 65
NRP+SPHL IYR + ++S ++RITGSV+ G V + A G H S+
Sbjct: 63 NRPVSPHLTIYRPQISWYLSALNRITGSVLSGGLYVFATAYLVAPAIGWHLESASLAAAF 122
Query: 66 GSVFEVCLFLYTWAV----IHHMLGGIRYLIWDVSLCLDKK 102
G++ F V H + G+R+LIWD+ L K
Sbjct: 123 GALPLAAKFAIKLGVAMPFTFHCMNGVRHLIWDLGKKLSNK 163
>gi|297250644|ref|ZP_06864705.2| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
polysaccharea ATCC 43768]
gi|296838408|gb|EFH22346.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
polysaccharea ATCC 43768]
Length = 141
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RP+ L RL VSI+HRI+G +++ P ++++ + E + R +
Sbjct: 22 RPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVSHP 81
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ ++ L WA +HH GIR+L D L+ A AK + AS L + +V
Sbjct: 82 LVKLILLGVLWAYLHHFFAGIRFLFLDAHKGLELNTARNTAK-AVFASALVLTVV 135
>gi|254450977|ref|ZP_05064414.1| succinate dehydrogenase, cytochrome b556 subunit [Octadecabacter
antarcticus 238]
gi|198265383|gb|EDY89653.1| succinate dehydrogenase, cytochrome b556 subunit [Octadecabacter
antarcticus 238]
Length = 103
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 50/92 (54%)
Query: 26 SIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHML 85
SI R+TG+ + +G ++V+WF +A+G + +M ++ +F + +H L
Sbjct: 3 SIFTRLTGNALIVGALLIVWWFSALASGPEAYARANGFMTSWFGDLVMFGSVACLWYHTL 62
Query: 86 GGIRYLIWDVSLCLDKKIATQMAKINIIASIL 117
G+R+LIWD LD + + + + ++ S+L
Sbjct: 63 AGVRHLIWDSGHMLDVERSERAGQAIVLVSVL 94
>gi|310814646|ref|YP_003962610.1| Succinate dehydrogenase cytochrome b-556 subunit
[Ketogulonicigenium vulgare Y25]
gi|308753381|gb|ADO41310.1| Succinate dehydrogenase cytochrome b-556 subunit
[Ketogulonicigenium vulgare Y25]
Length = 132
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 6/127 (4%)
Query: 5 KNNRPLSPHL--QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
K RPLSP + + YR+ T S++ RI+G+ + G ++V+W +A G +
Sbjct: 6 KGGRPLSPFMLGKYYRIQLTSASSLLTRISGNALIAGAVLLVWWLLGLAMGPDWFGPVHW 65
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS----ILT 118
+ + + + TWA+ +H+L G R+LI+D L + A ++ +I S +LT
Sbjct: 66 VVTSWIGRLIIVGSTWALWYHLLAGARHLIFDQGYGLKIQTAERLGWAAVIGSFVLTVLT 125
Query: 119 VLIVWII 125
V + W+I
Sbjct: 126 VGLFWLI 132
>gi|113969971|ref|YP_733764.1| succinate dehydrogenase subunit C [Shewanella sp. MR-4]
gi|114047206|ref|YP_737756.1| succinate dehydrogenase subunit C [Shewanella sp. MR-7]
gi|117920153|ref|YP_869345.1| succinate dehydrogenase subunit C [Shewanella sp. ANA-3]
gi|113884655|gb|ABI38707.1| succinate dehydrogenase subunit C [Shewanella sp. MR-4]
gi|113888648|gb|ABI42699.1| succinate dehydrogenase subunit C [Shewanella sp. MR-7]
gi|117612485|gb|ABK47939.1| succinate dehydrogenase subunit C [Shewanella sp. ANA-3]
Length = 131
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP+ LQ R T VSI+HR++G ++ ++++ + + ++
Sbjct: 6 QNVKKQRPVHLDLQTIRFPATAIVSILHRVSGVIMLFAVGILIWLLNSSLASAESFAGVQ 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK----INIIASIL 117
D V + ++ A+ +H+ GG+R+L+ D + T AK + + SIL
Sbjct: 66 SLFDNFVVKFIMWGILTALAYHLFGGLRHLVMDTGRWEELASGTASAKAVFVLTVAFSIL 125
Query: 118 TVLIVW 123
L VW
Sbjct: 126 AGLWVW 131
>gi|260220786|emb|CBA28698.1| hypothetical protein Csp_A08450 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 163
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 14 LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC-------YMDG 66
L YRL P +VSI+HRI+G+++++ P +++ F + E + + ++ G
Sbjct: 40 LPTYRLPPAGWVSILHRISGAIMFILMPFIIWMFDTSVSSEISFAKFTSVFSVGVGFIPG 99
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
++ WA +HH + G+R+L D++ + K+ A
Sbjct: 100 WFVKLVALAIIWAYLHHFIAGMRHLWMDINHAVSKEFGRSSA 141
>gi|213968188|ref|ZP_03396333.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. tomato T1]
gi|301383807|ref|ZP_07232225.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. tomato Max13]
gi|302059585|ref|ZP_07251126.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. tomato K40]
gi|302133374|ref|ZP_07259364.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. tomato NCPPB 1108]
gi|213927168|gb|EEB60718.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. tomato T1]
Length = 124
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L+ +L T + SI+HR++G ++++G ++++ E ++
Sbjct: 1 MNSQRPVNLDLRTIKLPVTAYTSILHRVSGVILFVGIAIMLYAMDKSLASEEGFGEVKAC 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
+ + ++ ++ A+++HM+ GIR+LI D + + +KI I S++ +L+
Sbjct: 61 LTSPLAKLIIWGLLSALLYHMVAGIRHLIMDTGVGETLEGGKLGSKIVIAVSVVLILLAG 120
Query: 122 VWI 124
VWI
Sbjct: 121 VWI 123
>gi|149374990|ref|ZP_01892763.1| succinate dehydrogenase (C subunit) [Marinobacter algicola DG893]
gi|149360879|gb|EDM49330.1| succinate dehydrogenase (C subunit) [Marinobacter algicola DG893]
Length = 150
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
S++ + RP++ L + SI+HR++G ++++G +++ +GE S +
Sbjct: 25 SAVNSKRPVNLDLGKFHFPLPAITSILHRVSGIIIFVGVAFMLYGLQLSLSGEEGFSRVS 84
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+D + ++ + A+++H++ GI++L+ D+ + + + AK ++ S++ +L+
Sbjct: 85 DLLDSFLAKLITWGILSALLYHLVAGIKHLLMDMGIGEELESGRLAAKATVVISVILILL 144
Query: 122 --VWI 124
VW+
Sbjct: 145 AGVWV 149
>gi|71737948|ref|YP_274200.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|257485479|ref|ZP_05639520.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. tabaci ATCC 11528]
gi|289624405|ref|ZP_06457359.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. aesculi str. NCPPB3681]
gi|289646681|ref|ZP_06478024.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. aesculi str. 2250]
gi|298486513|ref|ZP_07004573.1| Succinate dehydrogenase cytochrome b-556 subunit [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|71558501|gb|AAZ37712.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|298158990|gb|EFI00051.1| Succinate dehydrogenase cytochrome b-556 subunit [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|320329258|gb|EFW85255.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330880846|gb|EGH14995.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. glycinea str. race 4]
gi|331010660|gb|EGH90716.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. tabaci ATCC 11528]
Length = 124
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L+ +L T + SI+HRI+G ++++G ++++ E ++
Sbjct: 1 MNSQRPVNLDLRTIKLPVTAYTSILHRISGVILFVGIAIMLYAMDKSLASEEGFGEVKAC 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
+ + ++ ++ A+++HM+ GIR+LI D + + +KI I S++ +L+
Sbjct: 61 LTSPLAKLIIWGLLSALLYHMVAGIRHLIMDSGVGETLEGGKLGSKIVIAVSVVLILLAG 120
Query: 122 VWI 124
VWI
Sbjct: 121 VWI 123
>gi|221134277|ref|ZP_03560582.1| succinate dehydrogenase, cytochrome b subunit [Glaciecola sp.
HTCC2999]
Length = 124
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-EHTLSSLRC 62
+K RP++ L + P+ SI+HR+TG ++ + V W + ++ G E ++++
Sbjct: 1 MKKQRPVNLDLNTIKFPPSAISSILHRVTGVAMFFAL-LFVIWAWAVSLGSEEGFNNVQI 59
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
MDG + + A+ +H+LGGIR+ I D+ +++ + N++ I VL V
Sbjct: 60 IMDGFLGKFVAIGTVSALTYHILGGIRHGIMDMGYW--EELESGNTSANVVIGIWVVLTV 117
>gi|88607062|ref|YP_505561.1| succinate dehydrogenase, cytochrome b556 subunit [Anaplasma
phagocytophilum HZ]
gi|46361034|gb|AAL17653.2| succinate dehydrogenase subunit C [Anaplasma phagocytophilum]
gi|88598125|gb|ABD43595.1| succinate dehydrogenase, cytochrome b556 subunit [Anaplasma
phagocytophilum HZ]
Length = 127
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 19/112 (16%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL--- 60
+ +RPLSPHL +Y+L T ++SI HRITG ++ +G + + + L L
Sbjct: 1 MSRSRPLSPHLSVYKLPITAWLSITHRITGVLLLMGLTLFTWLLISLHWTSGQLWGLLDS 60
Query: 61 -------RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIAT 105
+ + G + +C +H GIR+L WD + K AT
Sbjct: 61 WIGVLLVKVIIGGCIAALC---------YHYYNGIRHLFWDCGIGFGKSEAT 103
>gi|329903473|ref|ZP_08273492.1| Succinate dehydrogenase cytochrome b-556 subunit [Oxalobacteraceae
bacterium IMCC9480]
gi|327548348|gb|EGF33033.1| Succinate dehydrogenase cytochrome b-556 subunit [Oxalobacteraceae
bacterium IMCC9480]
Length = 136
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 1 MSSI-KNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE 54
MS + K NRP ++ + YRL +SI+HRI+G +++ PV+++ E
Sbjct: 1 MSEVTKTNRPEFRNIHVTQLANYRLPLAGLISILHRISGFLMFALLPVILYLLDQSLLSE 60
Query: 55 HTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKI 110
T + ++ L +WA +HH GIR+L D + ++K A + A I
Sbjct: 61 GTFEYFKGITSNWFVKLVLLAVSWAFLHHFCAGIRHLFMDNHIGIEKDSARKSAVI 116
>gi|254672872|emb|CBA07129.1| succinate dehydrogenase cytochrome b-556 subunit [Neisseria
meningitidis alpha275]
Length = 114
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 25 VSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHM 84
VSI+HRI+G +++ P ++++ + E + R + + ++ L WA +HH
Sbjct: 12 VSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVSHPLVKLVLIGVLWAYLHHS 71
Query: 85 LGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
L GIR+L D L+ A AK + AS L + +V
Sbjct: 72 LAGIRFLFLDAHKGLELNTARNTAK-AVFASALVLTVV 108
>gi|148284919|ref|YP_001249009.1| succinate dehydrogenase, cytochrome b556 subunit [Orientia
tsutsugamushi str. Boryong]
gi|146740358|emb|CAM80791.1| succinate dehydrogenase, cytochrome b556 subunit [Orientia
tsutsugamushi str. Boryong]
Length = 116
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 10 LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVF 69
+SPH+ IYR+ +M +SI+HR++G V+ G ++ +W + + + + F
Sbjct: 1 MSPHITIYRMQMSMILSILHRLSGMAVFGGASIITWWLILCVYSDFDRIVVDIFYN-LWF 59
Query: 70 EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ ++L + H+ GIR+LIWD K
Sbjct: 60 QALIYLTIFTTCFHLCTGIRHLIWDTGYGFSIK 92
>gi|167522351|ref|XP_001745513.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775862|gb|EDQ89484.1| predicted protein [Monosiga brevicollis MX1]
Length = 178
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
K NRP+SPHL IYR +SI HR++G+ + + H LS Y+
Sbjct: 58 KLNRPMSPHLTIYRFPLPAILSISHRVSGAALTMAISAAAIGLMV-----HPLS---FYI 109
Query: 65 DG----SVFEVCLF----LYTWAVIHHMLGGIRYLIWDVSLCLD 100
D + C F L + +H + G+R+L WD + L+
Sbjct: 110 DAVQAMQLPAACFFTTKTLLAFPFTYHTVNGLRHLFWDTAKGLE 153
>gi|313768525|ref|YP_004062200.1| SdhC [Gracilariopsis andersonii]
gi|312844652|gb|ADR03216.1| SdhC [Gracilariopsis andersonii]
Length = 126
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFW------FFCIANGEHTLSSL 60
NRPLSPHL IY+ + SI HRI+G ++L T ++VF+ F I + L+SL
Sbjct: 3 NRPLSPHLTIYKPQVSSLFSIWHRISG--IFL-TFLIVFYLISSQLFLHITYSKDVLNSL 59
Query: 61 RCYMDGSVF-EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
++ S F + L T +H + G++++IWD+ K
Sbjct: 60 IIQLEYSFFLQFIYILNTSIFFYHAINGVKHIIWDLGFFPTPK 102
>gi|261822347|ref|YP_003260453.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Pectobacterium wasabiae WPP163]
gi|261606360|gb|ACX88846.1| succinate dehydrogenase, cytochrome b556 subunit [Pectobacterium
wasabiae WPP163]
Length = 129
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
S+K RP++ LQ + T SI+HR++G + ++ ++++ + E
Sbjct: 3 KSVKKQRPVNLELQTIQFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSEEGFLRAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-----LCLDKKIATQMAKINIIASI 116
MD + + ++ A+ +H++GG+R+L+ D L K+ A I ++ SI
Sbjct: 63 EIMDSFIVKFIVWGILAALAYHIVGGLRHLLMDFGYIEEDLAAGKRSANISFIITVVLSI 122
Query: 117 LTVLIVW 123
L ++VW
Sbjct: 123 LAGVLVW 129
>gi|11467108|ref|NP_054409.1| succinate dehydrogenase subunit 3 [Marchantia polymorpha]
gi|543911|sp|P35721|C560_MARPO RecName: Full=Succinate dehydrogenase cytochrome b560 subunit;
AltName: Full=Succinate dehydrogenase, subunit III
gi|786193|gb|AAC09406.1| ORF137 [Marchantia polymorpha]
Length = 137
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 10/125 (8%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVV-FWFFCIANGEHTLSSLRC 62
+K NRPLSPHL IY+ T SI HRI+G+ +L T V+ FF I + T
Sbjct: 1 MKINRPLSPHLTIYKPQLTSTFSIFHRISGA--FLATMVLFSILFFKIGDLSLTFYHFYQ 58
Query: 63 YMDGSVFEVCLFLYT------WAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIAS 115
Y F + F+ + A+ +HM G+R+L+WD+ L+ K+ T + A+
Sbjct: 59 YFFFLTFYLNWFIISLVNFTLLALCYHMSNGVRHLLWDLGFFLELSKVYTSGIIMLFCAA 118
Query: 116 ILTVL 120
L +L
Sbjct: 119 FLALL 123
>gi|225559635|gb|EEH07917.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
capsulatus G186AR]
Length = 215
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIAN---GEHTLSSLRCY 63
NRP+SPH+ IYR T +S++HR TG + L P +F+ A+ G H S+
Sbjct: 85 NRPVSPHISIYRPQITSVLSLLHRNTG--LLLSGPFYLFFAAYAASPWLGWHIDSTSMAA 142
Query: 64 MDGSV-FEVCLFLYTWAVIH---HMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
G++ + L T A + H + G+R+L+WD+ K T+ + I SI +
Sbjct: 143 SFGTLPVAAKVLLKTTAALPFTFHCINGVRHLVWDLGRGFSNKQVTKSGRTVIGLSISSA 202
Query: 120 LIV 122
L++
Sbjct: 203 LLL 205
>gi|320589791|gb|EFX02247.1| succinate dehydrogenase cytochrome b560 subunit [Grosmannia
clavigera kw1407]
Length = 612
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 27/141 (19%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMF-VSIVHRITG----------SVVYLGTPVVVFWFFC 49
++S + RP+SPHL IY F SI+HR TG S+ YL P++
Sbjct: 481 LASQRLQRPVSPHLDIYDKRQIYFGASILHRFTGLTYAGLLYGGSLAYLAAPLL------ 534
Query: 50 IANGEHTLS-SLRCYMDG---SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIA 104
G H S SL + G ++ V F W + H G R+L+WD ++ K +IA
Sbjct: 535 ---GWHLESQSLVTFAAGLPLALKGVAKFALAWPLAFHFFNGARHLVWDAAVGFSKAEIA 591
Query: 105 TQMAKINIIA--SILTVLIVW 123
I +++ S L + +W
Sbjct: 592 KGTTAIWVLSVVSSLGLAFLW 612
>gi|300113363|ref|YP_003759938.1| succinate dehydrogenase cytochrome b556 subunit [Nitrosococcus
watsonii C-113]
gi|299539300|gb|ADJ27617.1| succinate dehydrogenase, cytochrome b556 subunit [Nitrosococcus
watsonii C-113]
Length = 128
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
N RP+ +L + R VS++HRI+G ++ PVVV+ E + +
Sbjct: 4 NNPRPIFFNLALIRFPANAVVSVLHRISGVILLFFIPVVVYLLDLSLRDEEGFVWVTQFF 63
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV---SLCLDKKIATQMAKINIIASILTVLI 121
+ + WA++HH+ GIR+L++D+ + D + + +I+A ++T+LI
Sbjct: 64 SSLPVRLMGIIALWALLHHIFAGIRFLLFDIHVGKIVKDYRPSWSARIASILALVVTLLI 123
>gi|119183341|ref|XP_001242721.1| hypothetical protein CIMG_06617 [Coccidioides immitis RS]
Length = 305
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPV-VVFWFFCIANGEHTLSSLRCYMD 65
NRP+SPHL IYR + ++S ++RITGSV+ G V + A G H S+
Sbjct: 182 NRPVSPHLTIYRPQISWYLSALNRITGSVLSGGLYVFATAYLVAPAIGWHLESASLAAAF 241
Query: 66 GSVFEVCLFLYTWAV----IHHMLGGIRYLIWDVSLCLDKK 102
G++ F V H + G+R+LIWD+ L K
Sbjct: 242 GALPLAAKFAIKLGVAMPFTFHCMNGVRHLIWDLGKKLSNK 282
>gi|58616911|ref|YP_196110.1| succinate dehydrogenase cytochrome B-556 subunit [Ehrlichia
ruminantium str. Gardel]
gi|58416523|emb|CAI27636.1| Succinate dehydrogenase cytochrome B-556 subunit [Ehrlichia
ruminantium str. Gardel]
Length = 132
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHLQ+Y+L +SI HR TG ++++G ++ + F A + + S
Sbjct: 5 RPLSPHLQVYKLPMAAVLSITHRFTGILLFIGLLLLAWTFIACAIYPELIHKAYLFFSTS 64
Query: 68 V-----FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
F++ +F+ + +H L G+R+++WD L L K + ++ S+L IV
Sbjct: 65 YFALYGFKLFIFVCLNVLCYHYLNGVRHILWDFGLGLTKSAVKTSGIVVLVLSLLFSFIV 124
Query: 123 W 123
+
Sbjct: 125 Y 125
>gi|124267357|ref|YP_001021361.1| succinate dehydrogenase subunit C [Methylibium petroleiphilum PM1]
gi|124260132|gb|ABM95126.1| succinate dehydrogenase subunit C [Methylibium petroleiphilum PM1]
Length = 146
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 14/121 (11%)
Query: 2 SSIKNNRPLSPHLQI-------YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE 54
+++K RP H I YRL P VSI+HRI+G++++L P +V+ F + E
Sbjct: 4 TTVKAGRPRPVHRNIHVSQIIGYRLPPAGIVSILHRISGAIMFLLLPFIVWLFDTSLSSE 63
Query: 55 HTLSSLRC-------YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQM 107
+ + ++ G ++ WA + H + G+R+L DV+ + K+ +
Sbjct: 64 ISYETFTSAFVAGIGFVPGWFVKLVALALIWAYLLHFIAGVRHLWMDVTHAVSKEAGHRS 123
Query: 108 A 108
A
Sbjct: 124 A 124
>gi|269959019|ref|YP_003328808.1| succinate dehydrogenase cytochrome B-556 subunit [Anaplasma
centrale str. Israel]
gi|269848850|gb|ACZ49494.1| succinate dehydrogenase cytochrome B-556 subunit [Anaplasma
centrale str. Israel]
Length = 127
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 25/136 (18%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ +RPLSPHLQIYRL ++SI HR +G +++ G +V+ W F + LRC
Sbjct: 2 VLRSRPLSPHLQIYRLPVAAWLSITHRASGLLLFFGL-LVLSWLFVL---------LRCA 51
Query: 64 MDG---------SVFEVCLFLYTW--AVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINI 112
D F V L ++ A +H G+R+L+WD + LDK + T +
Sbjct: 52 PDCVMPFLANPWGFFLVKLLSFSCCVAFCYHYFNGVRHLLWDCGVGLDKTVVTASNTFVL 111
Query: 113 IA----SILTVLIVWI 124
+ S++T VW+
Sbjct: 112 LLTAAFSVVTFFFVWL 127
>gi|156376569|ref|XP_001630432.1| predicted protein [Nematostella vectensis]
gi|156217453|gb|EDO38369.1| predicted protein [Nematostella vectensis]
Length = 169
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-EHTLSSLRCYMD 65
RP+SP L Y+ +S HR+TG ++ GT + + G EH ++ ++ +
Sbjct: 48 KRPMSPFLLTYKFEFPALLSGSHRVTGVIMTTGTTIFALCALGLPEGLEHYVNVIKGWEL 107
Query: 66 GSVF-EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
F C L W V +H L G+R+L WD+ + K
Sbjct: 108 PRPFIFTCKTLLAWPVCYHGLNGLRHLFWDIGKGFEIK 145
>gi|253687626|ref|YP_003016816.1| succinate dehydrogenase, cytochrome b556 subunit [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251754204|gb|ACT12280.1| succinate dehydrogenase, cytochrome b556 subunit [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 129
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
S+K RP++ LQ + T SI+HR++G + ++ ++++ + E
Sbjct: 3 KSVKKQRPVNLELQTIQFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSEEGFLRAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-----LCLDKKIATQMAKINIIASI 116
MD + + ++ A+ +H++GG+R+L+ D L K+ A I ++ SI
Sbjct: 63 EIMDSFIVKFIVWGILVALAYHIVGGLRHLLMDFGYIEEDLAAGKRSANISFIITVVLSI 122
Query: 117 LTVLIVW 123
L ++VW
Sbjct: 123 LAGVLVW 129
>gi|221220958|gb|ACM09140.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
Length = 186
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K NRP+SPHL IY++ +S HR TG + + + V F N L ++R
Sbjct: 51 KNVKLNRPVSPHLSIYKMELPPLLSGSHRTTGFIFTVMSVSVATMSFLPWNWATILETMR 110
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
Y+ F V +H GIR+L+WD+
Sbjct: 111 YYVPYPPIVFAKFGCVAGVSYHFFNGIRHLVWDLG 145
>gi|24373491|ref|NP_717534.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
oneidensis MR-1]
gi|24347791|gb|AAN54978.1|AE015636_2 succinate dehydrogenase, cytochrome b556 subunit [Shewanella
oneidensis MR-1]
Length = 131
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP+ LQ R T VSI+HR++G ++ ++++ + + ++
Sbjct: 6 QNVKKQRPVHLDLQTIRFPATAIVSILHRVSGVIMLFAVGILIWLLNSSLASAESFAGVQ 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK----INIIASIL 117
D V + ++ A+ H+ GG+R+L+ D + T AK + + SIL
Sbjct: 66 SLFDNFVVKFIMWGILTALTFHLFGGLRHLVMDTGRWEELASGTASAKAVFVLTVAFSIL 125
Query: 118 TVLIVW 123
L VW
Sbjct: 126 AGLWVW 131
>gi|304310233|ref|YP_003809831.1| Succinate dehydrogenase, cytochrome b556 subunit [gamma
proteobacterium HdN1]
gi|301795966|emb|CBL44167.1| Succinate dehydrogenase, cytochrome b556 subunit [gamma
proteobacterium HdN1]
Length = 127
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 65/125 (52%), Gaps = 2/125 (1%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA-NGEHTLSS 59
M ++ N RP+ L+ +L T + SI+HRI+G V+ G +++ W ++ E
Sbjct: 1 MMTVNNQRPVHLDLRTIKLPITAYTSILHRISG-VILFGGLILMLWALDVSLASEQGFEQ 59
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
++ +D ++ + A+++H+ G+R+++ D+ + + + +KI I S + +
Sbjct: 60 VKGVLDNFFVKLITWGLLSALLYHLAAGVRHMLMDIDIGETLQGGRKGSKIVFIVSGVLI 119
Query: 120 LIVWI 124
LI I
Sbjct: 120 LIAGI 124
>gi|254994783|ref|ZP_05276973.1| succinate dehydrogenase cytochrome b556 subunit (sdhC) [Anaplasma
marginale str. Mississippi]
gi|255002908|ref|ZP_05277872.1| succinate dehydrogenase cytochrome b556 subunit (sdhC) [Anaplasma
marginale str. Puerto Rico]
gi|255004036|ref|ZP_05278837.1| succinate dehydrogenase cytochrome b556 subunit (sdhC) [Anaplasma
marginale str. Virginia]
Length = 120
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 25/130 (19%)
Query: 10 LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG--- 66
+SPHLQ+Y+L +SI HR +G ++ G V+ W F + LRC D
Sbjct: 1 MSPHLQVYKLPVAALLSITHRASGLFLFFGLSVLS-WLFVL---------LRCAPDCIAP 50
Query: 67 ------SVFEVCLFLYTW--AVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA---- 114
F V L ++ A +H G+R+L+WD + LDK T + ++
Sbjct: 51 FLANPLGFFLVKLLSFSCCVAFCYHYFNGVRHLLWDCGVGLDKTAVTASSAFVLLLTAAF 110
Query: 115 SILTVLIVWI 124
S++ VW+
Sbjct: 111 SVVAFFFVWL 120
>gi|82701992|ref|YP_411558.1| succinate dehydrogenase, cytochrome b subunit [Nitrosospira
multiformis ATCC 25196]
gi|82410057|gb|ABB74166.1| succinate dehydrogenase subunit C [Nitrosospira multiformis ATCC
25196]
Length = 125
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 14 LQIYRLIPTMFVSIVHRITGSVVYL-GTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVC 72
L+I + +P + +SI+HRI+G++++ G P+V+ + L+ +++ + +
Sbjct: 12 LKIRQPLPAV-ISILHRISGALLFFPGIPLVLCGLDMALGSSEDYARLQSFLNNPMAKFG 70
Query: 73 LFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKI----NIIASILTVLIVW 123
L L W +HH GIRYL D+ + + A +K+ I+ ++LT ++W
Sbjct: 71 LILALWFFLHHFCAGIRYLALDLHYGVKLEQARLSSKVVVGAGIVLTLLTGAVIW 125
>gi|254455343|ref|ZP_05068772.1| succinate dehydrogenase, cytochrome b556 subunit [Candidatus
Pelagibacter sp. HTCC7211]
gi|207082345|gb|EDZ59771.1| succinate dehydrogenase, cytochrome b556 subunit [Candidatus
Pelagibacter sp. HTCC7211]
Length = 127
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
++N PLSPH+QIYR + VSI HRITG + + ++ W + G+ + S++ +
Sbjct: 1 MENKSPLSPHIQIYRWHISSLVSISHRITGIINIIAITLICIWASMLILGDSSYSTINLF 60
Query: 64 MD---GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINII--ASILT 118
+ G F + L W+ +L IR+LI D+ + K T++ I +I + LT
Sbjct: 61 FNSLLGKFFAIGL---AWSFSFQILSEIRHLIMDMGYGFELK-TTRITGIAVIFGSVALT 116
Query: 119 VLIVWIIKDIV 129
+LI I K+ +
Sbjct: 117 ILIYLIGKNFI 127
>gi|288941679|ref|YP_003443919.1| succinate dehydrogenase, cytochrome b556 subunit [Allochromatium
vinosum DSM 180]
gi|288897051|gb|ADC62887.1| succinate dehydrogenase, cytochrome b556 subunit [Allochromatium
vinosum DSM 180]
Length = 128
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 69/128 (53%), Gaps = 4/128 (3%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RP+ L +L + VSI+HR++G ++ L P+V F + ++
Sbjct: 1 MTTPRPVFLDLLRIKLPLSGIVSILHRVSGVLMVLTIPIVAILFHQALSSPEGFAATAAV 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS----ILTV 119
+D + ++ L WA+ HH++ GIR+L D + LD+ +A + A++ + A+ +L++
Sbjct: 61 LDTWLIKLVLLGLLWALFHHLVAGIRHLFLDYGVGLDRAMARETARLTLYAAPVLLVLSI 120
Query: 120 LIVWIIKD 127
++ +++ D
Sbjct: 121 ILSFLLGD 128
>gi|164663263|ref|XP_001732753.1| hypothetical protein MGL_0528 [Malassezia globosa CBS 7966]
gi|159106656|gb|EDP45539.1| hypothetical protein MGL_0528 [Malassezia globosa CBS 7966]
Length = 193
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 38/146 (26%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFCI 50
+++ +N RP+SPHL IY+ T SI+HR TG ++ YL P I
Sbjct: 60 LNTQRNERPISPHLSIYQPQLTWVSSILHRATGTGMSWALYAYAIGYLAAP-------HI 112
Query: 51 ANGEHTLSSLRCYMDGSVFEVCLFLYTWAVI-----------HHMLGGIRYLIWDVSLC- 98
GE LSS GS+ + L WA + +H G+R+L WD+ C
Sbjct: 113 GLGE-MLSS------GSLVDAVSHLPAWAKVSVKAPLAAAFMYHFFNGLRHLAWDMGYCT 165
Query: 99 --LDKKIATQMAKINIIASILTVLIV 122
+A ++ + S+ +L+V
Sbjct: 166 FLFSHVVANRLTTVQSRFSVRRILLV 191
>gi|120598552|ref|YP_963126.1| succinate dehydrogenase, cytochrome subunit B [Shewanella sp.
W3-18-1]
gi|146293369|ref|YP_001183793.1| succinate dehydrogenase, cytochrome subunit B [Shewanella
putrefaciens CN-32]
gi|120558645|gb|ABM24572.1| succinate dehydrogenase subunit C [Shewanella sp. W3-18-1]
gi|145565059|gb|ABP75994.1| succinate dehydrogenase subunit C [Shewanella putrefaciens CN-32]
gi|319426671|gb|ADV54745.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
putrefaciens 200]
Length = 131
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 51/108 (47%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP+ LQ R T SI+HR++G ++ ++++ + +S++
Sbjct: 6 QNVKKQRPVHLDLQTIRFPATAIASILHRVSGVIMLFAVGILIWLLNSSLASAESFASVQ 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
D + + L+ A+ +H+ GG+R+L+ D + T AK
Sbjct: 66 SLFDNFIMKFILWGIMTALAYHLFGGLRHLVMDTGRWEELASGTASAK 113
>gi|170722680|ref|YP_001750368.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
putida W619]
gi|169760683|gb|ACA73999.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
putida W619]
Length = 128
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 54/96 (56%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K+ RP++ L+ +L T + SI+HRI+G +++LG ++++ E ++
Sbjct: 3 KAVKSQRPVNLDLRTIKLPVTAYTSILHRISGVILFLGLAIMLYALGKSLGSEEGFGEVK 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL 97
+ + + + A+++H++ G+R+LI D+ +
Sbjct: 63 ACLTSPLAKFVTWGLLSALLYHLVAGVRHLIMDMGI 98
>gi|332283673|ref|YP_004415584.1| succinate dehydrogenase cytochrome B subunit [Pusillimonas sp.
T7-7]
gi|330427626|gb|AEC18960.1| succinate dehydrogenase cytochrome B subunit [Pusillimonas sp.
T7-7]
Length = 104
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGE-HTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLG 86
+HR +G++++L P+V+ F ++ G + +S++ ++ + ++ L W +HH
Sbjct: 1 MHRASGALLFLCIPLVILPLFALSVGSPESFASIQDWVANPLCKLVLLALIWGYLHHFCA 60
Query: 87 GIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
GIRYL+ D+ + DK A + A + S+ L+
Sbjct: 61 GIRYLVLDLHIGNDKHTAQKTAGVVFGVSLALTLV 95
>gi|296285024|ref|ZP_06863022.1| succinate dehydrogenase subunit C [Citromicrobium bathyomarinum
JL354]
Length = 108
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 23 MFVSIVHRITGSVVYL-GTPVVVFWFFCIANGEH---TLSSLRCYMDGSVFEVCLFLYTW 78
MF SI+HR+TG + L G V+++W +A+G T S++ + G + V L TW
Sbjct: 1 MFTSILHRVTGDGMALVGLAVLLWWLGAMASGPEAYATFSAVATSIPGYIVLVGL---TW 57
Query: 79 AVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
A HM+ G+R+ + D+ + I + + I +L + W I
Sbjct: 58 AFFSHMMSGLRHFVLDIGAGYELTINKTWSTLAPILGVLLTIAFWAI 104
>gi|104782665|ref|YP_609163.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
entomophila L48]
gi|95111652|emb|CAK16373.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
entomophila L48]
Length = 128
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 55/96 (57%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K+ RP++ L+ +L T + SI+HRI+G +++LG ++++ E + ++
Sbjct: 3 KAVKSQRPVNLDLRTIKLPITAYTSILHRISGVILFLGLAIMLYALGKSLGSEEGFAEVK 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL 97
+ + ++ + +++H++ G+R+LI D+ +
Sbjct: 63 ACLTSPLAKLVTWGLLSGLLYHLVAGVRHLIMDMGI 98
>gi|227114759|ref|ZP_03828415.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Pectobacterium carotovorum subsp. brasiliensis PBR1692]
gi|227327541|ref|ZP_03831565.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Pectobacterium carotovorum subsp. carotovorum WPP14]
Length = 129
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
S+K RP++ LQ + T SI+HR++G + ++ ++++ + E
Sbjct: 3 KSVKKQRPVNLELQTIQFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSEEGFLRAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-----LCLDKKIATQMAKINIIASI 116
MD + + ++ A+ +H++GGIR+L+ D K+ A I ++ SI
Sbjct: 63 EIMDSFIVKFIVWGILVALAYHIVGGIRHLLMDFGYIEEDFAAGKRSANISFIITVVLSI 122
Query: 117 LTVLIVW 123
L ++VW
Sbjct: 123 LAGVLVW 129
>gi|83647436|ref|YP_435871.1| succinate dehydrogenase (C subunit) [Hahella chejuensis KCTC 2396]
gi|83635479|gb|ABC31446.1| succinate dehydrogenase (C subunit) [Hahella chejuensis KCTC 2396]
Length = 132
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++ + RP++ L + SI+HRI+G ++++ +++ + + +SL+
Sbjct: 7 EAVNSKRPVNLDLTKFHFPLPAITSILHRISGVIIFIAMAFLLWGLDASLASKESFASLQ 66
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
MD + ++ L+ A+ +H + GI++LI D + K AK+ I S++ +L+
Sbjct: 67 SVMDSFLAKLILWGILAALFYHFVAGIKHLIMDAGIGETLKGGQIAAKVVIAVSVVLILL 126
Query: 122 --VWI 124
VWI
Sbjct: 127 AGVWI 131
>gi|295311709|ref|YP_003587361.1| succinate dehydrogenase subunit 3 [Cucurbita pepo]
gi|259156837|gb|ACV96698.1| succinate dehydrogenase subunit 3 [Cucurbita pepo]
Length = 105
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 22/99 (22%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHL IY+ T SI HRI+G+ +L T V+ F+ C+ G L C+ S
Sbjct: 5 RPLSPHLPIYKPQLTSTFSIFHRISGA--FLATLVLFFYLLCLKMG------LICFTHES 56
Query: 68 VFEVCLFLYTWAVI------------HHMLGGIRYLIWD 94
+ F Y+ +I +H+ G+R+L+ D
Sbjct: 57 FYR--FFFYSSKLILISVEITALALSYHLYKGVRHLLTD 93
>gi|110834361|ref|YP_693220.1| succinate dehydrogenase, cytochrome b556 subunit [Alcanivorax
borkumensis SK2]
gi|110647472|emb|CAL16948.1| succinate dehydrogenase, cytochrome b556 subunit [Alcanivorax
borkumensis SK2]
Length = 125
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L + T SI HR+TG ++L P++++ + + L+
Sbjct: 1 MNDKRPVNLDLSTIKFPVTAIASITHRVTGVAIFLALPILLWMLDRSLTSPESFADLKEL 60
Query: 64 MDGSVFEVCLFLYTWAV----IHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
M S+ + L WA+ ++H++ GIR+LI D + + + AK+ + S++ +
Sbjct: 61 MMTSLL---VKLVVWAILSVLLYHLVAGIRHLIMDAGVGESLEGGRRGAKLTFLISVVLI 117
Query: 120 LIV--WI 124
L+V WI
Sbjct: 118 LLVGGWI 124
>gi|295311666|ref|YP_003587250.1| succinate dehydrogenase subunit 3 [Citrullus lanatus]
gi|295311667|ref|YP_003587234.1| succinate dehydrogenase subunit 3 [Citrullus lanatus]
gi|259156794|gb|ACV96656.1| succinate dehydrogenase subunit 3 [Citrullus lanatus]
gi|259156795|gb|ACV96657.1| succinate dehydrogenase subunit 3 [Citrullus lanatus]
Length = 95
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 22/101 (21%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHL IY+ T SI HRI+G+ +L T V+ F+ C+ G L C+ +
Sbjct: 5 RPLSPHLPIYKPQLTSTFSIFHRISGA--FLATLVLFFYLLCLKMG------LICFTYSN 56
Query: 68 VFEVCLFLYTWAVI------------HHMLGGIRYLIWDVS 96
+ F Y+ +I +H+ G+R+L+ D S
Sbjct: 57 FYR--FFFYSSKLILISAEITALALSYHLYNGVRHLLTDFS 95
>gi|221220716|gb|ACM09019.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
Length = 170
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSSLR 61
K NRP+SPHL IY+ M +SI HR TG V L + F + N + L +
Sbjct: 47 KLNRPVSPHLTIYKWSLPMMMSITHRGTG--VGLSGGISAFALLALVLPGNYPYYLDLIH 104
Query: 62 CYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
G ++ + F + V +H L GIR+L WD + + I+ SILT
Sbjct: 105 SLSVGPALLSLAKFGIAFPVSYHTLNGIRHLFWDSGKGFKIPEVYRSGYVVIVLSILT 162
>gi|46132950|ref|XP_389188.1| hypothetical protein FG09012.1 [Gibberella zeae PH-1]
Length = 187
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIV-HRITG----------SVVYLGTPVVVFWFFCIANGEH 55
NRP+SPHL IY+L T F S +RITG S+ YL PVV +
Sbjct: 62 NRPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLESL----- 116
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+++S + +V F + ++H + G+++L++D K Q K AS
Sbjct: 117 SIASFVAGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAAS 176
Query: 116 ILTVL 120
+L +
Sbjct: 177 VLGAI 181
>gi|58578853|ref|YP_197065.1| succinate dehydrogenase cytochrome B-556 subunit [Ehrlichia
ruminantium str. Welgevonden]
gi|58417479|emb|CAI26683.1| Succinate dehydrogenase cytochrome B-556 subunit [Ehrlichia
ruminantium str. Welgevonden]
Length = 143
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHLQ+Y+L + +SI HR TG ++++G ++ + F A + + S
Sbjct: 16 RPLSPHLQVYKLPMSAVLSITHRFTGILLFIGLLLLAWTFIACAIYPELIHKAYLFFSTS 75
Query: 68 V-----FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
F++ +F+ + +H L G+R+++WD L L K + ++ S+L IV
Sbjct: 76 YFALYGFKLFIFVCLNVLCYHYLNGVRHILWDFGLGLTKSAVKISGIVVLVLSLLFSFIV 135
Query: 123 W 123
+
Sbjct: 136 Y 136
>gi|77165931|ref|YP_344456.1| succinate dehydrogenase, cytochrome b subunit [Nitrosococcus oceani
ATCC 19707]
gi|76884245|gb|ABA58926.1| succinate dehydrogenase subunit C [Nitrosococcus oceani ATCC 19707]
Length = 140
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 17/131 (12%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWF-FCIANGE------HTL 57
N RP+ +L + R VS +HRI+G ++ PVVV+ F + + E
Sbjct: 16 NNPRPIFFNLALIRFPANAVVSALHRISGVILLFFIPVVVYLLDFSLRDKESFVWVTEFF 75
Query: 58 SSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV---SLCLDKKIATQMAKINIIA 114
SSL + G V WA++HH+ GIR+L++D+ + D + + +I+A
Sbjct: 76 SSLPVRLVGIV-------ALWALLHHIFAGIRFLLFDIHMGKIVKDYRPSWSARITSILA 128
Query: 115 SILTVLIVWII 125
++T+LIV ++
Sbjct: 129 LVVTLLIVGVL 139
>gi|2137070|pir||I48085 integral membrane protein CII-3 - Chinese hamster (fragment)
Length = 171
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSS 59
+ + RP+SPHL IYR M +SI HR TG V L V +F + N E L
Sbjct: 49 NTSSKRPVSPHLTIYRWSLPMVMSICHRGTG--VALSGGVSLFGLSALLLPGNFESYLMF 106
Query: 60 LRCYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
++ G ++ F+ + +++H L GIR+LIWD+ L
Sbjct: 107 IKSLCLGPALIHSAKFVLVFPLMYHSLNGIRHLIWDLGKGLS 148
>gi|21362398|sp|P70097|C560_CRIGR RecName: Full=Succinate dehydrogenase cytochrome b560 subunit,
mitochondrial; AltName: Full=Integral membrane protein
CII-3; AltName: Full=QPs-1; Short=QPs1; Flags: Precursor
gi|1518874|gb|AAB07265.1| integral membrane protein CII-3 [Cricetulus griseus]
Length = 169
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSS 59
+ + RP+SPHL IYR M +SI HR TG V L V +F + N E L
Sbjct: 45 NTSSKRPVSPHLTIYRWSLPMVMSICHRGTG--VALSGGVSLFGLSALLLPGNFESYLMF 102
Query: 60 LRCYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
++ G ++ F+ + +++H L GIR+LIWD+ L
Sbjct: 103 IKSLCLGPALIHSAKFVLVFPLMYHSLNGIRHLIWDLGKGLS 144
>gi|221219992|gb|ACM08657.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
Length = 170
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSSLR 61
K NRP+SPHL IY+ M +SI HR TG V L + F + N + L +
Sbjct: 47 KLNRPVSPHLTIYKWSLPMMMSITHRGTG--VGLSGGISAFALLALVLPGNYPYYLDLIH 104
Query: 62 CYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
G ++ + F + V +H L GIR+L WD + + I+ SILT
Sbjct: 105 SLSVGPALLSLAKFGIAFPVSYHTLNGIRHLFWDSGKGFKIPEVYRSGYVVIVLSILT 162
>gi|221219496|gb|ACM08409.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
gi|221219988|gb|ACM08655.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
gi|221221046|gb|ACM09184.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
Length = 170
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSSLR 61
K NRP+SPHL IY+ M +SI HR TG V L + F + N + L +
Sbjct: 47 KLNRPVSPHLTIYKWSLPMMMSITHRGTG--VGLSGGISAFALLALVLPGNYPYYLDLIH 104
Query: 62 CYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
G ++ + F + V +H L GIR+L WD + + I+ SILT
Sbjct: 105 SLSVGPALLSLAKFGIAFPVSYHTLNGIRHLFWDSGKGFKIPEVYRSGYVVIVLSILT 162
>gi|242792819|ref|XP_002482034.1| succinate dehydrogenase cytochrome b560 subunit [Talaromyces
stipitatus ATCC 10500]
gi|218718622|gb|EED18042.1| succinate dehydrogenase cytochrome b560 subunit [Talaromyces
stipitatus ATCC 10500]
Length = 188
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPV-VVFWFFCIANGEHTLSSLRCYMD 65
RP+SPHL IYR T + S +HRITGS+ G V + G H S+
Sbjct: 65 KRPVSPHLSIYRPQITWYASGLHRITGSIASGGLYVFATAYLVAPVFGWHLESASIAAAF 124
Query: 66 GSVFEVCLFLYTWA----VIHHMLGGIRYLIWDVSLCLDKK 102
G++ FL V H G+R+L+WD L K
Sbjct: 125 GALPFAAKFLVKLGLALPVTFHSFNGVRHLLWDTGRFLTNK 165
>gi|67903612|ref|XP_682062.1| hypothetical protein AN8793.2 [Aspergillus nidulans FGSC A4]
gi|40741396|gb|EAA60586.1| hypothetical protein AN8793.2 [Aspergillus nidulans FGSC A4]
gi|67517322|gb|AAY68233.1| cytochrome B-560 subunit of succinate dehydrogenase [Emericella
nidulans]
gi|259483001|tpe|CBF78009.1| TPA: Cytochrome B-560 subunit of succinate dehydrogenasePutative
uncharacterized protein ;
[Source:UniProtKB/TrEMBL;Acc:Q5ASD7] [Aspergillus
nidulans FGSC A4]
Length = 191
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 15/106 (14%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFCIANGEHT 56
RP+SPHL IYR T ++S +HR+TG + YL P + W A+ +
Sbjct: 68 RRPVSPHLTIYRPQITWYMSALHRVTGIILSGPLYIFATAYLAAP-LFGWHLESASLAAS 126
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
++L S+ + +T+ H G+R+L+WD + K
Sbjct: 127 FATLPLAAKFSLKTLAALPFTY----HSFNGLRHLMWDTGRGITNK 168
>gi|221220816|gb|ACM09069.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
gi|221221340|gb|ACM09331.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
gi|221221580|gb|ACM09451.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
Length = 170
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSSLR 61
K NRP+SPHL IY+ M +SI HR TG V L + F + N + L +
Sbjct: 47 KLNRPVSPHLTIYKWSLPMMMSITHRGTG--VGLSGGISAFALLALVLPGNYPYYLDLIH 104
Query: 62 CYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
G ++ + F + V +H L GIR+L WD + + I+ SILT
Sbjct: 105 SLSVGPALLSLAKFGIAFPVSYHTLNGIRHLFWDSGKGFKIPEVYRSGYVVIVLSILT 162
>gi|224365626|ref|YP_002608354.1| succinate dehydrogenase subunit 3 [Vitis vinifera]
gi|209954150|emb|CAQ77586.1| succinate dehydrogenase subunit 3 [Vitis vinifera]
gi|239764777|gb|ACS15245.1| succinate dehydrogenase subunit 3 [Vitis vinifera]
Length = 168
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHL IY+ T I HRI+G+ +L T V+ F+ C+ G L C+ +
Sbjct: 66 RPLSPHLPIYKPQLTSTFPIYHRISGA--FLATLVLFFYLLCLKIG------LICFTYEN 117
Query: 68 VFEVCLF----------LYTWAVIHHMLGGIRYLIWDVS 96
++ F + A+ +H+ G+R+L+ D S
Sbjct: 118 FYQFFFFSSKLILISVGITALALSYHLYNGVRHLLTDFS 156
>gi|255713256|ref|XP_002552910.1| KLTH0D04312p [Lachancea thermotolerans]
gi|238934290|emb|CAR22472.1| KLTH0D04312p [Lachancea thermotolerans]
Length = 168
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 26/136 (19%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL---- 60
+ NRP+SPHL IY+ T ++S +HR++G ++ G F+ IA G L L
Sbjct: 42 RKNRPVSPHLTIYQPQLTWYLSSLHRVSGVILAFG-----FFATTIAFGTSALLGLGLTS 96
Query: 61 ----RCY-------MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV--SLCLDKKIATQM 107
R Y MD + +L+ + H G+R+LIWD +L L T
Sbjct: 97 NNLARWYHEKVPRWMDLTAKGSFAYLFAF----HFANGLRHLIWDAGKALTLRGVYTTGY 152
Query: 108 AKINIIASILTVLIVW 123
A + ++A T L+ W
Sbjct: 153 AVMAVMALGGTYLLTW 168
>gi|149040639|gb|EDL94596.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, isoform CRA_c [Rattus norvegicus]
Length = 150
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSSLR 61
+NRP+SPHL IYR M +S+ HR GS + + V +F + N E L ++
Sbjct: 28 SSNRPVSPHLTIYRWSLPMAMSVCHR--GSGIAMSGGVSLFGLSALLLPGNFESYLMLVK 85
Query: 62 CYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
G ++ F+ + +++H L G+R+L+WD+ L
Sbjct: 86 SLCLGPALIHAAKFVLVFPLMYHSLNGVRHLMWDLGKGLS 125
>gi|114563518|ref|YP_751031.1| succinate dehydrogenase, cytochrome b subunit [Shewanella
frigidimarina NCIMB 400]
gi|114334811|gb|ABI72193.1| succinate dehydrogenase subunit C [Shewanella frigidimarina NCIMB
400]
Length = 131
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP+ LQ T SI+HRI+G ++ ++++ +S++
Sbjct: 6 QNVKKQRPVHLDLQTISFPATAIASILHRISGVIMLFAIGILLWLLNSTLTSADGFASVQ 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK----INIIASIL 117
DG V + ++ A+ +H+LGGIR+LI D + AK + ++ SI+
Sbjct: 66 SLFDGFVMKFIIWGILTALGYHLLGGIRHLIMDAGHWEELASGVSSAKATFVLAVVFSII 125
Query: 118 TVLIVW 123
+ VW
Sbjct: 126 AGIWVW 131
>gi|262369422|ref|ZP_06062750.1| succinate dehydrogenase cytochrome b556 subunit [Acinetobacter
johnsonii SH046]
gi|262315490|gb|EEY96529.1| succinate dehydrogenase cytochrome b556 subunit [Acinetobacter
johnsonii SH046]
Length = 132
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 1 MSSIKNNRP----LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP + L++ P SI+HR++G +V+L PV+++ +
Sbjct: 1 MPAVKSNRPVNLSMGQVLEVNLKSPVAIASILHRLSGVIVFLLVPVLLWILDKSLSSPEG 60
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ ++ + + ++++ +I H + G+++L+ D+ + + + A I++I S
Sbjct: 61 FAQVQAIFNSFIVRFVVWVFVAGLIFHFIAGVKHLLADIGIAEELQSGRIAATISLILSA 120
Query: 117 LTVL--IVWII 125
+ ++ VWI+
Sbjct: 121 IGIVAAFVWIV 131
>gi|126134539|ref|XP_001383794.1| succinate dehydrogenase [Scheffersomyces stipitis CBS 6054]
gi|126095943|gb|ABN65765.1| succinate dehydrogenase [Scheffersomyces stipitis CBS 6054]
Length = 160
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 45/104 (43%), Gaps = 23/104 (22%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRP+SPHL IY+ TM +S HRITG V G F+ + G S L
Sbjct: 35 RKNRPVSPHLTIYQPQLTMVLSSFHRITG-VAMAGA------FYALTCGYAATSILNIPF 87
Query: 65 DGSVF--------------EVCLFLYTWAVIHHMLGGIRYLIWD 94
D SV L Y +A H GIR+L+WD
Sbjct: 88 DASVLVGVFASLPVAVKLSAKALMAYPFAF--HFGNGIRHLVWD 129
>gi|192362455|ref|YP_001981987.1| Succinate dehydrogenase cytochrome b subunit [Cellvibrio japonicus
Ueda107]
gi|190688620|gb|ACE86298.1| Succinate dehydrogenase cytochrome b subunit [Cellvibrio japonicus
Ueda107]
Length = 128
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 18/133 (13%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI----ANGEHTL 57
S++K NRP++ + +L T +VSI+HRI+G ++ G + W I A G +
Sbjct: 3 STVKKNRPVNLDISTIKLPITAYVSILHRISGIFLFAGVA-FLLWMLDISLRSAEGFEQV 61
Query: 58 SSLRCYMDGSVFEVCLFLYTWAVI----HHMLGGIRYLIWDVSLCLDKKIATQMAK-INI 112
++ +C F+ WAV+ +H++ GIR+LI D+ + K AK + +
Sbjct: 62 KAIGAS------PLCQFIL-WAVLAGLAYHLVAGIRHLIMDLGVGETLKGGQLGAKLVVV 114
Query: 113 IASILTVLI-VWI 124
IA++L +L VW+
Sbjct: 115 IATVLIILAGVWV 127
>gi|57238921|ref|YP_180057.1| succinate dehydrogenase cytochrome B-556 subunit [Ehrlichia
ruminantium str. Welgevonden]
gi|57161000|emb|CAH57906.1| putative succinate dehydrogenase cytochrome b-556 subunit
[Ehrlichia ruminantium str. Welgevonden]
Length = 132
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHLQ+Y+L +SI HR TG ++++G ++ + F A + + S
Sbjct: 5 RPLSPHLQVYKLPMAAVLSITHRFTGILLFIGLLLLAWTFIACAIYPELIHKAYLFFSTS 64
Query: 68 V-----FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
F++ +F+ + +H L G+R+++WD L L K + ++ S+L IV
Sbjct: 65 YFALYGFKLFIFVCLNVLCYHYLNGVRHILWDFGLGLTKSAVKISGIVVLVLSLLFSFIV 124
Query: 123 W 123
+
Sbjct: 125 Y 125
>gi|281352142|gb|EFB27726.1| hypothetical protein PANDA_018826 [Ailuropoda melanoleuca]
Length = 144
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSSLRCY 63
NRPLSPH+ IY M +SI HR TG V L V +F + N E L ++
Sbjct: 24 NRPLSPHITIYSWSLPMAMSICHRGTG--VALSAGVSLFGLSALLIPGNFESHLELVKSL 81
Query: 64 MDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
G S+ F + +++H GIR+L+WD+ L KI Q+ + + +LTVL
Sbjct: 82 CLGPSLIYTAKFALVFPLMYHTWNGIRHLVWDLGKGL--KIP-QLYQSGVAVLVLTVL 136
>gi|251790498|ref|YP_003005219.1| succinate dehydrogenase, cytochrome b556 subunit [Dickeya zeae
Ech1591]
gi|247539119|gb|ACT07740.1| succinate dehydrogenase, cytochrome b556 subunit [Dickeya zeae
Ech1591]
Length = 129
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ R T SI+HR++G + ++ ++++ + + +
Sbjct: 5 VKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSLSSQEGFAQAAAI 64
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKIN----IIASILT 118
M G + + ++ A+ +H++GG+R+L+ D + + ++ AKI+ ++ S+L
Sbjct: 65 MSGFIVKFIVWGILTALAYHIVGGLRHLLMDFGYIEENFEAGSRSAKISFIITVVLSLLA 124
Query: 119 VLIVW 123
++VW
Sbjct: 125 GVLVW 129
>gi|224020960|ref|YP_002608193.1| succinate dehydrogenase subunit 3 [Carica papaya]
gi|170522372|gb|ACB20482.1| succinate dehydrogenase subunit 3 [Carica papaya]
Length = 108
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 22/114 (19%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHL IY+ T I HRI+G+ +L T V+ F+ FC+ G C+ +
Sbjct: 5 RPLSPHLPIYKPQLTSTFPISHRISGA--FLATIVLFFYLFCLKIG------FICFTYEN 56
Query: 68 VFEVCLFLYTWAVI------------HHMLGGIRYLIWDVSLCLDKKIATQMAK 109
++ F Y+ +I +H+ G+R+L+ D S L +I + K
Sbjct: 57 FYQ--FFFYSSKLILISAEIAALALSYHLYNGVRHLLTDFSGFLFLRIGRKRLK 108
>gi|57111445|ref|XP_536140.1| PREDICTED: similar to succinate dehydrogenase complex, subunit C
precursor [Canis familiaris]
Length = 169
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSSLRCY 63
NRPLSPH+ IY M +SI HR TG V L V +F + N E L ++
Sbjct: 49 NRPLSPHITIYSWSLPMAMSICHRGTG--VALSAGVSLFGLSALLVPGNFESHLELVKSL 106
Query: 64 MDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
G S+ F + +++H GIR+LIWD+ L KI Q+ + + +LTVL
Sbjct: 107 CLGPSLIYTAKFALVFPLMYHTWNGIRHLIWDLGKGL--KIP-QLYQSGVAVLVLTVL 161
>gi|332528254|ref|ZP_08404259.1| succinate dehydrogenase subunit C [Hylemonella gracilis ATCC 19624]
gi|332042274|gb|EGI78595.1| succinate dehydrogenase subunit C [Hylemonella gracilis ATCC 19624]
Length = 147
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 14 LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH--------TLSSLRCYMD 65
L YRL +VSI+HR++G++++L P V+ W F A S+ ++
Sbjct: 24 LPTYRLPAAGWVSILHRVSGALMFLLLPFVI-WLFDTATTSELSYERFAAAFSAGIGFVP 82
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
G ++ W +HH++ G+R+L D + + K+ A + ++ SI L++
Sbjct: 83 GWFVKLATLGLIWGYLHHIIAGLRHLWMDATHAVTKEFGRNSAVVTLVLSIGLTLVL 139
>gi|26990885|ref|NP_746310.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
putida KT2440]
gi|148546899|ref|YP_001267001.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
putida F1]
gi|167034759|ref|YP_001669990.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
putida GB-1]
gi|325275376|ref|ZP_08141322.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas sp.
TJI-51]
gi|24985898|gb|AAN69774.1|AE016613_9 succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
putida KT2440]
gi|148510957|gb|ABQ77817.1| succinate dehydrogenase subunit C [Pseudomonas putida F1]
gi|166861247|gb|ABY99654.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
putida GB-1]
gi|313497961|gb|ADR59327.1| SdhC [Pseudomonas putida BIRD-1]
gi|324099493|gb|EGB97393.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas sp.
TJI-51]
Length = 128
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 54/96 (56%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K+ RP++ L+ +L T + SI+HRI+G ++++G ++++ E ++
Sbjct: 3 KAVKSQRPVNLDLRTIKLPVTAYTSILHRISGVILFIGLAIMLYALGKSLGSEEGFGEVK 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL 97
+ + + + A+++H++ G+R+LI D+ +
Sbjct: 63 ACLTSPLAKFVTWGLLSALLYHLVAGVRHLIMDMGI 98
>gi|289742767|gb|ADD20131.1| succinate dehydrogenase cytochrome b subunit [Glossina morsitans
morsitans]
Length = 173
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 18/106 (16%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLG----------TPVVVFWFFCIANGEHT 56
R +SPHL IY+ T +S+ HR TG V+ G +P + + + G H
Sbjct: 53 GREMSPHLTIYQPQLTSLLSVTHRGTGMVLTAGVWALGLAALISPQDIGNYASVIEGLH- 111
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ G V F++ + + H G+R+L+WD L K
Sbjct: 112 -------LGGGTLTVLKFMFAFPLAFHTANGVRHLLWDTGRFLKIK 150
>gi|90021755|ref|YP_527582.1| succinate dehydrogenase subunit C [Saccharophagus degradans 2-40]
gi|89951355|gb|ABD81370.1| succinate dehydrogenase subunit C [Saccharophagus degradans 2-40]
Length = 124
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 62/121 (51%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ NRP++ + RL T VSI HR+TG V+ G +++ E + + L+
Sbjct: 1 MNKNRPVNLDISTMRLPITALVSITHRVTGVVLLAGILGLIWMLDLSLASEESFNQLKDC 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ ++ L A+ +H++ G+R+LI D+ + K+ AKI + S++ ++++
Sbjct: 61 LAQPFVKIALIAVLAALAYHLVAGVRHLIMDLGIGESKEGGKLGAKIAVALSVVLIVLMG 120
Query: 124 I 124
I
Sbjct: 121 I 121
>gi|53850596|ref|NP_001005534.1| succinate dehydrogenase complex, subunit C [Rattus norvegicus]
gi|51980592|gb|AAH82027.1| Succinate dehydrogenase complex, subunit C, integral membrane
protein [Rattus norvegicus]
gi|149040638|gb|EDL94595.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, isoform CRA_b [Rattus norvegicus]
Length = 169
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSS 59
+ +NRP+SPHL IYR M +S+ HR GS + + V +F + N E L
Sbjct: 45 NTSSNRPVSPHLTIYRWSLPMAMSVCHR--GSGIAMSGGVSLFGLSALLLPGNFESYLML 102
Query: 60 LRCYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
++ G ++ F+ + +++H L G+R+L+WD L K ++ ++ S +T
Sbjct: 103 VKSLCLGPALIHAAKFVLVFPLMYHSLNGVRHLMWD----LGKGLSISQVQL----SGVT 154
Query: 119 VLIVWIIKD 127
VL++ ++
Sbjct: 155 VLVLAVLSS 163
>gi|149040637|gb|EDL94594.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, isoform CRA_a [Rattus norvegicus]
Length = 132
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSSLR 61
+NRP+SPHL IYR M +S+ HR GS + + V +F + N E L ++
Sbjct: 10 SSNRPVSPHLTIYRWSLPMAMSVCHR--GSGIAMSGGVSLFGLSALLLPGNFESYLMLVK 67
Query: 62 CYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
G ++ F+ + +++H L G+R+L+WD+ L
Sbjct: 68 SLCLGPALIHAAKFVLVFPLMYHSLNGVRHLMWDLGKGLS 107
>gi|153001031|ref|YP_001366712.1| succinate dehydrogenase cytochrome b556 subunit [Shewanella baltica
OS185]
gi|151365649|gb|ABS08649.1| Succinate dehydrogenase cytochrome b556 subunit [Shewanella baltica
OS185]
Length = 131
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP+ LQ R T VSI+HR++G ++ ++++ + + ++
Sbjct: 6 QNVKKQRPVHLDLQTIRFPATAIVSILHRVSGVIMLFAVGILIWLLNSSLASAESFAGVQ 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK----INIIASIL 117
D V + L+ A+ +H+ GG+R+L+ D + AK + + SI+
Sbjct: 66 SLFDNFVMKFILWGIMTALAYHLFGGLRHLVMDTGRWEELSSGAASAKAVFALTVAFSII 125
Query: 118 TVLIVW 123
+ VW
Sbjct: 126 AGIWVW 131
>gi|116199017|ref|XP_001225320.1| hypothetical protein CHGG_07664 [Chaetomium globosum CBS 148.51]
gi|88178943|gb|EAQ86411.1| hypothetical protein CHGG_07664 [Chaetomium globosum CBS 148.51]
Length = 188
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 16/107 (14%)
Query: 7 NRPLSPHLQIYRLIPTMF-VSIVHRITGSV----------VYLGTPVVVFWFFCIANGEH 55
NRP+SPHL +Y T F SI RITGS YL P+V W A+
Sbjct: 63 NRPVSPHLDVYDKQQTWFGGSIWMRITGSAFSGSLYVFATAYLAAPLVG-WHLESASLAA 121
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+L G++ FL W H + G+R+L++D+++ ++
Sbjct: 122 AFGALPFAAKGAL----KFLAAWPFAFHAINGVRHLLFDMAVGFKRQ 164
>gi|330811091|ref|YP_004355553.1| succinate dehydrogenase (succinate dehydrogenase cytochrome b556
subunit) [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327379199|gb|AEA70549.1| Succinate dehydrogenase (Succinate dehydrogenase cytochrome b556
subunit) [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 124
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K+ RP++ L+ +L T + SI+HRI+G ++++ ++++ + E ++
Sbjct: 1 MKSQRPVNLDLRTIKLPVTAYTSILHRISGVILFVSLAIMLYALDKSLDSEEGFGQVKAC 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINI-IASILTVLI- 121
+ + ++ ++ A+++H++ G+R+LI D+ + + +KI I ++++L VL
Sbjct: 61 LTSPLAKLVIWGILSALLYHLVAGVRHLIMDMGIGETLEGGKLGSKIIIAVSAVLIVLAG 120
Query: 122 VWI 124
VWI
Sbjct: 121 VWI 123
>gi|85544667|pdb|2FBW|C Chain C, Avian Respiratory Complex Ii With Carboxin Bound
gi|85544671|pdb|2FBW|P Chain P, Avian Respiratory Complex Ii With Carboxin Bound
gi|304445606|pdb|2WQY|C Chain C, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
gi|304445610|pdb|2WQY|P Chain P, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
Length = 141
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSLRC- 62
K++RPLSPH+ IY+ M +SI HR TG + LG + V H ++ ++
Sbjct: 18 KSSRPLSPHISIYKWSLPMAMSITHRGTGVALSLGVSLFSVAALLLPEQFPHYVAVVKSL 77
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ ++ F + + +H GIR+L+WD+ +Q+ + ++ ILT+L
Sbjct: 78 SLSPALIYSAKFALVFPLSYHTWNGIRHLVWDMGKGFK---LSQVEQSGVVVLILTLL 132
>gi|240848787|ref|NP_001155673.1| succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like
[Acyrthosiphon pisum]
gi|239788025|dbj|BAH70709.1| ACYPI006695 [Acyrthosiphon pisum]
Length = 175
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
NRP+SPHL IY+ T +SI HR TG V G + F + L + ++ G
Sbjct: 55 NRPMSPHLAIYKPQLTTILSITHRGTG-VALSGVTAGLGALFIFTD----LPTFVQFVHG 109
Query: 67 -----SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASIL 117
+ L + +H+ GIR+L+WD CL K I+ S+L
Sbjct: 110 LELPSAAIMSAKGLVAYPFFYHLCNGIRHLVWDAGKCLTIKQVYSTGYGVIVGSLL 165
>gi|320038993|gb|EFW20928.1| succinate dehydrogenase cytochrome b560 subunit [Coccidioides
posadasii str. Silveira]
Length = 193
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG----SVVYL-GTPVVVFWFFCIANGEHTLSSLR 61
NRP+SPHL IY+ T VS + R+TG +YL GT VV + +L++
Sbjct: 69 NRPVSPHLSIYKFQITSVVSSLERLTGMMLSGGLYLFGTAYVVSPYLGWDLSSASLAAAF 128
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ + F W + H L G +Y++W L+ K Q
Sbjct: 129 GALPFATKAAAKFSIAWPFLFHCLNGTKYMVWSWGKLLNNKAVIQAG 175
>gi|225713228|gb|ACO12460.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Lepeophtheirus salmonis]
Length = 173
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG----SVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
NRPLSPHL IY+ T +SI HR TG VVY G + F +N L SL
Sbjct: 56 NRPLSPHLTIYKPQLTSMLSITHRGTGIFLTGVVYAGG---LIPFLLPSNFPTFLQSLE- 111
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ S+ + F + H GIR+L WD+ + L + + + +++T +I+
Sbjct: 112 -VAPSLILLFKFGIAFPFAFHSWNGIRHLFWDMGIGLKIREVYSSGSLVVALALVTSVIL 170
Query: 123 WII 125
++
Sbjct: 171 TVL 173
>gi|222111457|ref|YP_002553721.1| succinate dehydrogenase, cytochrome b556 subunit [Acidovorax ebreus
TPSY]
gi|221730901|gb|ACM33721.1| succinate dehydrogenase, cytochrome b556 subunit [Acidovorax ebreus
TPSY]
Length = 144
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 62/129 (48%), Gaps = 14/129 (10%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPT------MFVSIVHRITGSVVYLGTPVVVFWFFCIANGE 54
M+ + RP ++ +R +P+ VS +HRI+G +++L P+V++ F + E
Sbjct: 1 MTELAKQRPEYRNIHAFRDLPSYRWPLAALVSGMHRISGMIMFLLLPLVIWMFDTSVSSE 60
Query: 55 -------HTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQ 106
SS + G + ++ W +HH + G+R+L+ D++ + K+
Sbjct: 61 ISFGKFTSAFSSGLGFAPGWLIKLLTLGLIWGYLHHFIAGLRHLLMDMNHAAVTKEFGKS 120
Query: 107 MAKINIIAS 115
A + ++AS
Sbjct: 121 SAAVTLVAS 129
>gi|290560974|gb|ADD37889.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
[Lepeophtheirus salmonis]
Length = 173
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG----SVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
NRPLSPHL IY+ T +SI HR TG VVY G + F +N L SL
Sbjct: 56 NRPLSPHLTIYKPQLTSMLSITHRGTGIFLTGVVYAGG---LIPFLLPSNFPTFLQSLE- 111
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ S+ + F + H GIR+L WD+ + L + + + +++T +I+
Sbjct: 112 -VAPSLILLFKFGIAFPFAFHSWNGIRHLFWDMGIGLKIREVYSSGSLVVALALVTSVIL 170
Query: 123 WII 125
++
Sbjct: 171 TVL 173
>gi|301786725|ref|XP_002928776.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like isoform 1 [Ailuropoda melanoleuca]
Length = 169
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSSLRCY 63
NRPLSPH+ IY M +SI HR TG V L V +F + N E L ++
Sbjct: 49 NRPLSPHITIYSWSLPMAMSICHRGTG--VALSAGVSLFGLSALLIPGNFESHLELVKSL 106
Query: 64 MDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
G S+ F + +++H GIR+L+WD+ L KI Q+ + + +LTVL
Sbjct: 107 CLGPSLIYTAKFALVFPLMYHTWNGIRHLVWDLGKGL--KIP-QLYQSGVAVLVLTVL 161
>gi|321470744|gb|EFX81719.1| hypothetical protein DAPPUDRAFT_49817 [Daphnia pulex]
Length = 169
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG-SVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RP+SPHL IY+ M +SI HR TG + L + + A+ H L L
Sbjct: 50 QRPISPHLSIYQFQSNMALSITHRFTGLAQNGLMYGLAIGAMVLPASFPHYLGMLEAAHL 109
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
V FL + +H++ G+R+L+WD L K
Sbjct: 110 PLVVLSGKFLIAFPFSYHLINGMRHLVWDTGFNLTIK 146
>gi|15004510|gb|AAK77126.1|AF362730_1 succinate dehydrogenase subunit 3 [Solanum lycopersicum]
gi|316996003|dbj|BAD83440.2| succinate dehydrogenase subunit 3 [Nicotiana tabacum]
Length = 108
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 22/114 (19%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHL IY+ T SI HRI+G+ +L T V F+ C+ G L C+ +
Sbjct: 5 RPLSPHLPIYKPQLTSTFSIFHRISGA--FLATIVFFFYLLCLKIG------LICFTYEN 56
Query: 68 VFEVCLFLYTWAVI------------HHMLGGIRYLIWDVSLCLDKKIATQMAK 109
++ F Y+ +I +H+ G+R+L+ D S +I + K
Sbjct: 57 FYQ--FFFYSSKLILISVEITALALSYHLYNGVRHLLTDFSGFFFLRIGRKRLK 108
>gi|293604090|ref|ZP_06686500.1| succinate dehydrogenase cytochrome b558 subunit [Achromobacter
piechaudii ATCC 43553]
gi|292817514|gb|EFF76585.1| succinate dehydrogenase cytochrome b558 subunit [Achromobacter
piechaudii ATCC 43553]
Length = 138
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA-NGEHTLSSLRCYMDGSVFEVCLFL 75
YRL +SI+HRI+G +++L P+V+ F + + + + + ++ +
Sbjct: 24 YRLPLAGKLSILHRISGILLFLCLPLVIVPLFAASVTAPQSFAWIAAIATHPIVKLVFLV 83
Query: 76 YTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKI 110
W +HH GIRYL+ D+ + +DK A + A +
Sbjct: 84 LMWGYLHHFCAGIRYLLLDLHIGIDKLSAKKSAGV 118
>gi|262375851|ref|ZP_06069083.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
lwoffii SH145]
gi|262309454|gb|EEY90585.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
lwoffii SH145]
Length = 132
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 1 MSSIKNNRP----LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP + L++ P SI+HR++G +V+L PV+++ +
Sbjct: 1 MPAVKSNRPVNLSMGQVLEVNLKSPVAIASILHRLSGVIVFLLVPVLLWILDKSLSSPEG 60
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ ++ +G + ++++ +I H + G+++L+ D+ + + + + I +I S
Sbjct: 61 FAQVQEIFNGFIVRFIVWVFVAGMIFHFIAGVKHLLADIGVAEELESGRVASTIALILSA 120
Query: 117 LTVL--IVWII 125
+ ++ VWI+
Sbjct: 121 IGIVAAFVWIV 131
>gi|294655076|ref|XP_457157.2| DEHA2B04488p [Debaryomyces hansenii CBS767]
gi|199429671|emb|CAG85151.2| DEHA2B04488p [Debaryomyces hansenii]
Length = 147
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 19/110 (17%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRP SPHL IY+L TM +S +HR+TG + G F+ + G S L
Sbjct: 22 RKNRPTSPHLTIYQLQLTMVMSGLHRVTGVFMASG-------FYALTCGYAAASILSIPF 74
Query: 65 DGSVF------------EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
D + + ++H G+R++IWD L K
Sbjct: 75 DAATLVGAFAGLPVAVKLAAKAAMAYPFVYHAFNGVRHIIWDFGKELTIK 124
>gi|225713156|gb|ACO12424.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Lepeophtheirus salmonis]
Length = 173
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG----SVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
NRPLSPHL IY+ T +SI HR TG VVY G + F +N L SL
Sbjct: 56 NRPLSPHLTIYKPQLTSMLSITHRGTGIFLTGVVYAGG---LIPFLLPSNFPTFLQSLE- 111
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
+ S+ + F + H GIR+L WD+ + L
Sbjct: 112 -VAPSLILLFKFGIAFPFAFHSWNGIRHLFWDMGIGLK 148
>gi|239814437|ref|YP_002943347.1| succinate dehydrogenase, cytochrome b556 subunit [Variovorax
paradoxus S110]
gi|239801014|gb|ACS18081.1| succinate dehydrogenase, cytochrome b556 subunit [Variovorax
paradoxus S110]
Length = 148
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 14 LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC-------YMDG 66
L YRL P VSI+HR++G +++L P +++ F + +++ + + ++ G
Sbjct: 24 LTTYRLPPAGIVSILHRVSGVLMFLLLPFIIWMFDTSLSSDYSFARFKAAFNSGLGFVPG 83
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
++ WA +HH + G+R+L DVS
Sbjct: 84 WFIKLVALALIWAYLHHFIAGLRHLWMDVS 113
>gi|330991156|ref|ZP_08315109.1| Succinate dehydrogenase cytochrome b556 subunit [Gluconacetobacter
sp. SXCC-1]
gi|329761742|gb|EGG78233.1| Succinate dehydrogenase cytochrome b556 subunit [Gluconacetobacter
sp. SXCC-1]
Length = 130
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%)
Query: 10 LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVF 69
+SPHLQ+YR +MF+SI +R G G+ + + W A G + S ++ +
Sbjct: 1 MSPHLQVYRFRLSMFLSIANRAAGVAAAGGSALGLCWISAAAKGPKSFSKVQKVTGNPLG 60
Query: 70 EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
++ L + A+++H + G+R+L WD KK + + + ++ T L
Sbjct: 61 QLLLAGWALALVYHFVAGLRHLAWDSGYRFSKKEINEDGPVAVGVTLGTTL 111
>gi|119479383|ref|XP_001259720.1| succinate dehydrogenase cytochrome b560 subunit [Neosartorya
fischeri NRRL 181]
gi|119407874|gb|EAW17823.1| succinate dehydrogenase cytochrome b560 subunit [Neosartorya
fischeri NRRL 181]
Length = 188
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFCIANGEHT 56
NRP+SPHL IYR T S HRITG + YL P + W A+
Sbjct: 65 NRPVSPHLSIYRPQITWIGSSAHRITGIALSGSLYLFATAYLAAP-LFGWHLESASIAAA 123
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQM 107
+L + F + ++H L G+R+L+WD L + I+ Q
Sbjct: 124 FGALPIAAKVFIKGTAAFPF----VYHCLNGVRHLVWD----LGRGISNQQ 166
>gi|120610878|ref|YP_970556.1| succinate dehydrogenase subunit C [Acidovorax citrulli AAC00-1]
gi|120589342|gb|ABM32782.1| succinate dehydrogenase subunit C [Acidovorax citrulli AAC00-1]
Length = 144
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 15/136 (11%)
Query: 1 MSSIKNNRPLSPH------LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE 54
M+ I RP + L YRL +VSI+HRI+G ++ L P V++ F + E
Sbjct: 1 MTEIAKKRPEFRNINALTDLPTYRLPAAGWVSILHRISGVIMLLLLPFVLWMFDTSVSSE 60
Query: 55 HTLSSLRC-------YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQ 106
+ ++ G ++ + WA +HH G+R+L DVS ++K +
Sbjct: 61 ISFGKFTSAFTAGLGFVPGWFIKLVVLALIWAYLHHFTAGLRHLWMDVSHDAVNKDFGSM 120
Query: 107 MAKINIIASI-LTVLI 121
AK ++ S+ LTV++
Sbjct: 121 SAKATLVISLALTVVL 136
>gi|291336334|gb|ADD95894.1| succinate dehydrogenase cytochrome b556 subunit [uncultured
marine bacterium MedDCM-OCT-S08-C1068]
Length = 70
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
++N RPLSPH+QIYR + VSI HRITG + +G ++ W + G+ + + +
Sbjct: 1 MENKRPLSPHIQIYRWHISSLVSISHRITGIINIVGITLICIWVSLLVLGDANYNFINQF 60
Query: 64 MD 65
++
Sbjct: 61 LN 62
>gi|326317737|ref|YP_004235409.1| succinate dehydrogenase, cytochrome b556 subunit [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323374573|gb|ADX46842.1| succinate dehydrogenase, cytochrome b556 subunit [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 144
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 15/136 (11%)
Query: 1 MSSIKNNRPLSPH------LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE 54
M+ I RP + L YRL +VSI+HRI+G ++ L P V++ F + E
Sbjct: 1 MTEIAKKRPEFRNINALTDLPTYRLPAAGWVSILHRISGVIMLLLLPFVLWMFDTSVSSE 60
Query: 55 HTLSSLRC-------YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQ 106
+ ++ G ++ + WA +HH G+R+L DVS ++K +
Sbjct: 61 ISFGKFTSAFTAGLGFVPGWFIKLVVLALIWAYLHHFTAGLRHLWMDVSHDAVNKHFGSM 120
Query: 107 MAKINIIASI-LTVLI 121
AK+ + S+ LTV++
Sbjct: 121 SAKVTLAISLGLTVIL 136
>gi|57013903|ref|YP_173376.1| succinate dehydrogenase subunit 3 [Nicotiana tabacum]
gi|57013992|ref|YP_173464.1| succinate dehydrogenase subunit 3 [Nicotiana tabacum]
gi|57014032|ref|YP_173503.1| succinate dehydrogenase subunit 3 [Nicotiana tabacum]
gi|56806628|dbj|BAD83529.1| succinate dehydrogenase subunit 3 [Nicotiana tabacum]
gi|56806668|dbj|BAD83569.1| succinate dehydrogenase subunit 3 [Nicotiana tabacum]
Length = 108
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 22/114 (19%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHL IY+ T SI HRI+G+ +L T V F+ C+ G L C+ +
Sbjct: 5 RPLSPHLPIYKPQLTSTFSISHRISGA--FLATIVFFFYLLCLKIG------LICFTYEN 56
Query: 68 VFEVCLFLYTWAVI------------HHMLGGIRYLIWDVSLCLDKKIATQMAK 109
++ F Y+ +I +H+ G+R+L+ D S +I + K
Sbjct: 57 FYQ--FFFYSSKLILISVEITALALSYHLYNGVRHLLTDFSGFFFLRIGRKRLK 108
>gi|59711426|ref|YP_204202.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio fischeri ES114]
gi|59479527|gb|AAW85314.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Vibrio fischeri ES114]
Length = 133
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+K +RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 9 KVKKSRPVNLDLQTIRFPITAIASILHRVSGVITFVSVGILLWLLNLSLSSPIGFAQAAD 68
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK----INIIASILT 118
Y+DG ++ A+ +H++ GIR+L+ D+ + + TQ AK I + S+L
Sbjct: 69 YVDGFFVTFIMWGILTALAYHIVVGIRHLLMDMGYFEELESGTQSAKVAFAITAVLSLLA 128
Query: 119 VLIVW 123
++VW
Sbjct: 129 GVLVW 133
>gi|316972827|gb|EFV56474.1| putative succinate dehydrogenase, cytochrome b556 subunit
[Trichinella spiralis]
Length = 185
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RPLSPHL +Y+ + T VS +HRI+G V +GT V +F +A ++L Y+
Sbjct: 62 KRPLSPHLTVYKPMLTWMVSGLHRISG--VVMGTTVALFSIGLMA-APFDFTTLIEYIRN 118
Query: 67 SVFEVCLFLY------TWAVIHHMLGGIRYLIWDVSLCLD 100
V +F+Y W + H L G+R+L +D++ D
Sbjct: 119 LHLPV-VFVYAVKYAIAWPLTFHTLNGVRFLAFDLAKGTD 157
>gi|146307530|ref|YP_001187995.1| succinate dehydrogenase subunit C [Pseudomonas mendocina ymp]
gi|145575731|gb|ABP85263.1| succinate dehydrogenase subunit C [Pseudomonas mendocina ymp]
Length = 128
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 56/97 (57%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ ++ + RP++ L+ +L T + SI+HRI+G ++++G +++F E + +
Sbjct: 2 IKAVNSQRPVNLDLRTIKLPITAYTSILHRISGVILFVGIAILLFGLDKSLTSEEGFAQV 61
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL 97
+ + + + ++ A+++H++ G+R+LI D+ +
Sbjct: 62 KECLTSPLAKFVIWGLLSALLYHLVAGVRHLIMDMGI 98
>gi|309380089|emb|CBX21500.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 125
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RP+ L RL + ++HRI+G +++ P ++++ + E + R +
Sbjct: 4 KPRPVYLDLPSIRLPIPGDIFLLHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVS 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS-ILTVLI 121
+ ++ L WA +HH L GIR+L D L+ A AK+ A+ +LTV++
Sbjct: 64 HPLVKLVLIGVLWAYLHHSLAGIRFLFLDAHKGLELNTARNTAKLVFTAALVLTVVL 120
>gi|39940728|ref|XP_359901.1| hypothetical protein MGG_04876 [Magnaporthe oryzae 70-15]
gi|145010897|gb|EDJ95553.1| hypothetical protein MGG_04876 [Magnaporthe oryzae 70-15]
Length = 184
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 16/124 (12%)
Query: 7 NRPLSPHLQIYRLIPT-MFVSIVHRITGSVV----------YLGTPVVVFWFFCIANGEH 55
RP+SPHLQIY T + S+ RITGS++ YL P+ W +
Sbjct: 59 KRPVSPHLQIYDYRQTWLSGSVWQRITGSLLTGGLYVFGAAYLVAPLT-GWHLETTSMAA 117
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+++ + G + FL W H + G+R+L+WD +L +K + + +
Sbjct: 118 AVAAWPAFAKGGL----KFLIAWPFTQHAIAGVRHLVWDFALGFNKPTIAKTTNVLWVTG 173
Query: 116 ILTV 119
IL+
Sbjct: 174 ILSA 177
>gi|126174732|ref|YP_001050881.1| succinate dehydrogenase, cytochrome subunit B [Shewanella baltica
OS155]
gi|217973009|ref|YP_002357760.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
baltica OS223]
gi|304409109|ref|ZP_07390730.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
baltica OS183]
gi|307303112|ref|ZP_07582867.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
baltica BA175]
gi|125997937|gb|ABN62012.1| succinate dehydrogenase subunit C [Shewanella baltica OS155]
gi|217498144|gb|ACK46337.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
baltica OS223]
gi|304352930|gb|EFM17327.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
baltica OS183]
gi|306913472|gb|EFN43894.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
baltica BA175]
Length = 131
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP+ LQ R T VSI+HR++G ++ ++++ + + ++
Sbjct: 6 QNVKKQRPVHLDLQTIRFPATAIVSILHRVSGVIMLFAVGILIWLLNSSLASAESFAGVQ 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK----INIIASIL 117
D V + ++ A+ +H+ GG+R+L+ D + AK + + SI+
Sbjct: 66 SLFDNFVMKFIMWGIMTALAYHLFGGLRHLVMDTGRWEELSSGAASAKAVFALTVAFSII 125
Query: 118 TVLIVW 123
+ VW
Sbjct: 126 AGIWVW 131
>gi|119572986|gb|EAW52601.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa, isoform CRA_d [Homo sapiens]
Length = 150
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSS 59
+I +NRPLSPH+ IY M +SI HR TG + L V +F + N E L
Sbjct: 26 NIGSNRPLSPHITIYSWSLPMAMSICHRGTG--IALSAGVSLFGMSALLLPGNFESYLEL 83
Query: 60 LRCYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
++ G ++ F + +++H GIR+L+WD+ L
Sbjct: 84 VKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLK 125
>gi|126666300|ref|ZP_01737279.1| Succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Marinobacter sp. ELB17]
gi|126629101|gb|EAZ99719.1| Succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Marinobacter sp. ELB17]
Length = 109
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 14 LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCL 73
+Q+YR T +S HR++G + LG ++V W A + L ++ ++ + L
Sbjct: 1 MQVYRPQLTSVLSFGHRLSGLFLSLGAVLLVGWLLTAATEAQAFTHLNAWLGSALGLLLL 60
Query: 74 FLYTWAVIHHMLGGIRYLIWDVSLCLD 100
F++T A+ H+ GIR+L+WD + +
Sbjct: 61 FIWTLALFFHLCNGIRHLLWDAVIGFE 87
>gi|149759773|ref|XP_001503815.1| PREDICTED: similar to succinate dehydrogenase complex, subunit C
[Equus caballus]
Length = 169
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLS 58
+I +NRP+SPH+ IY M +SI HR TG + L V +F + N E L
Sbjct: 44 KNIGSNRPMSPHITIYSWSLPMVMSICHRGTG--IALSAGVSLFGLSALLVPGNFESHLE 101
Query: 59 SLRCYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
++ G ++ F + +++H GIR+LIWD+ L
Sbjct: 102 LVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLIWDLGKGLK 144
>gi|148707185|gb|EDL39132.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, isoform CRA_a [Mus musculus]
Length = 150
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSS 59
+ +NRPLSPHL IY+ M +S+ HR GS + L V +F + N E L
Sbjct: 26 NTSSNRPLSPHLTIYKWSLPMALSVCHR--GSGIALSGGVSLFGLSALLLPGNFESYLMF 83
Query: 60 LRCYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCL 99
++ G ++ F+ + +++H L GIR+L+WD+ L
Sbjct: 84 VKSLCLGPTLIYSAKFVLVFPLMYHSLNGIRHLLWDLGKGL 124
>gi|148707186|gb|EDL39133.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, isoform CRA_b [Mus musculus]
Length = 169
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSS 59
+ +NRPLSPHL IY+ M +S+ HR GS + L V +F + N E L
Sbjct: 45 NTSSNRPLSPHLTIYKWSLPMALSVCHR--GSGIALSGGVSLFGLSALLLPGNFESYLMF 102
Query: 60 LRCYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
++ G ++ F+ + +++H L GIR+L+WD+
Sbjct: 103 VKSLCLGPTLIYSAKFVLVFPLMYHSLNGIRHLLWDLG 140
>gi|53237071|gb|AAH83091.1| Succinate dehydrogenase complex, subunit C, integral membrane
protein [Mus musculus]
Length = 169
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSS 59
+ +NRPLSPHL IY+ M +S+ HR GS + L V +F + N E L
Sbjct: 45 NTSSNRPLSPHLTIYKWSLPMALSVCHR--GSGIALSGGVSLFGLSALLLPGNFESYLMF 102
Query: 60 LRCYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
++ G ++ F+ + +++H L GIR+L+WD+
Sbjct: 103 VKSLCLGPTLIYSAKFVLVFPLMYHSLNGIRHLLWDLG 140
>gi|13543226|gb|AAH05779.1| Sdhc protein [Mus musculus]
Length = 169
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSS 59
+ +NRPLSPHL IY+ M +S+ HR GS + L V +F + N E L
Sbjct: 45 NTSSNRPLSPHLTIYKWSLPMALSVCHR--GSGIALSGGVSLFGLSALVLPGNFESYLMF 102
Query: 60 LRCYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
++ G ++ F+ + +++H L GIR+L+WD+
Sbjct: 103 VKSLCLGPTLIYSAKFVLVFPLMYHSLNGIRHLLWDLG 140
>gi|149911925|ref|ZP_01900524.1| succinate dehydrogenase, cytochrome b556 subunit [Moritella sp.
PE36]
gi|149805018|gb|EDM65046.1| succinate dehydrogenase, cytochrome b556 subunit [Moritella sp.
PE36]
Length = 128
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ + T SI+HRI+G ++ ++++ + E + +
Sbjct: 5 VKKQRPVNLDLQTIDMPITAIASILHRISGVIMLFAVGILLWLLAESLSSEQGFQNAQEI 64
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA----SILTV 119
+ G L+ A+ +H+ GGIR+L+ D+ + + AK++ +A SIL
Sbjct: 65 VSGFFGTFILWGILTALAYHIAGGIRHLLMDMGYFEELESGALSAKVSFVATVVLSILAG 124
Query: 120 LIVW 123
++VW
Sbjct: 125 IMVW 128
>gi|315052622|ref|XP_003175685.1| succinate dehydrogenase cytochrome B subunit [Arthroderma gypseum
CBS 118893]
gi|311341000|gb|EFR00203.1| succinate dehydrogenase cytochrome B subunit [Arthroderma gypseum
CBS 118893]
Length = 192
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV----------YLGTPVVVFWFFCI 50
++S + NRP++PHL IY+ T S + RITG+V+ YL +P + W
Sbjct: 70 LASQRLNRPIAPHLSIYKWQVTSVNSSLQRITGAVLSGSLYLFAVSYLASPYLG-WDLSS 128
Query: 51 ANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQ 106
+ ++SL +V F+ W + H+ +R+L WD+ K +Q
Sbjct: 129 DSLSAAMASLPWAGKATV----KFVIAWPFMFHVFNSLRHLAWDIGKGFAMKTVSQ 180
>gi|50308981|ref|XP_454496.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643631|emb|CAG99583.1| KLLA0E12123p [Kluyveromyces lactis]
Length = 181
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
S + RP+SPHL IY+ T ++S VHR++G V+LG + F+ IA G T+ L
Sbjct: 53 SQRKVRPVSPHLTIYQPQLTWYLSSVHRVSG--VFLG---LAFYAVTIAFGVSTVFGLGM 107
Query: 63 YMDG-------------SVFEVCLFLYTWAVIHHMLGGIRYLIWDV--SLCLDKKIATQM 107
+ + F Y +A H GIR+LIWD L L T
Sbjct: 108 STENLVQFYNEKIPSWIDLTAKAGFAYLFAF--HFGNGIRHLIWDTGKELTLKGVYRTGY 165
Query: 108 AKINIIASILTVLIVW 123
A + + A + + L+ W
Sbjct: 166 AVLGLTAIMGSYLLTW 181
>gi|294676288|ref|YP_003576903.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacter
capsulatus SB 1003]
gi|294475108|gb|ADE84496.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacter
capsulatus SB 1003]
Length = 132
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 7 NRPLSPHL--QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
RPLSP + YR T SI+ RITG+ + G + +W + + +
Sbjct: 8 ERPLSPFMIGPYYRPQMTSMSSILTRITGNALIAGFLLGAWWLIAAVSSPGYFGFVNWIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ + WA+ +H L G+R+L+WD LD + A ++ II S
Sbjct: 68 TSWLGWLIFAGMAWAMWYHYLTGLRHLLWDTGKGLDIETAEKLGWGAIIGS 118
>gi|228008307|ref|NP_079597.2| succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Mus musculus]
gi|21362402|sp|Q9CZB0|C560_MOUSE RecName: Full=Succinate dehydrogenase cytochrome b560 subunit,
mitochondrial; AltName: Full=Integral membrane protein
CII-3; AltName: Full=QPs-1; Short=QPs1; Flags: Precursor
gi|12849813|dbj|BAB28491.1| unnamed protein product [Mus musculus]
gi|26328275|dbj|BAC27878.1| unnamed protein product [Mus musculus]
gi|74183258|dbj|BAE22557.1| unnamed protein product [Mus musculus]
Length = 169
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSS 59
+ +NRPLSPHL IY+ M +S+ HR GS + L V +F + N E L
Sbjct: 45 NTSSNRPLSPHLTIYKWSLPMALSVCHR--GSGIALSGGVSLFGLSALLLPGNFESYLMF 102
Query: 60 LRCYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
++ G ++ F+ + +++H L GIR+L+WD+
Sbjct: 103 VKSLCLGPTLIYSAKFVLVFPLMYHSLNGIRHLLWDLG 140
>gi|70997878|ref|XP_753671.1| succinate dehydrogenase cytochrome b560 subunit [Aspergillus
fumigatus Af293]
gi|66851307|gb|EAL91633.1| succinate dehydrogenase cytochrome b560 subunit [Aspergillus
fumigatus Af293]
gi|159126596|gb|EDP51712.1| succinate dehydrogenase cytochrome b560 subunit [Aspergillus
fumigatus A1163]
Length = 208
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFCIANGEHT 56
NRP+SPHL IYR T S HRITG + YL P + W A+
Sbjct: 85 NRPVSPHLSIYRPQITWIGSSAHRITGIALSGSLYLFATAYLAAP-LFGWHLESASIAAA 143
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQM 107
+L + F + ++H L G+R+L+WD L + I+ Q
Sbjct: 144 FGALPIAAKVLIKGTAAFPF----VYHCLNGVRHLVWD----LGRGISNQQ 186
>gi|71064679|ref|YP_263406.1| succinate dehydrogenase subunit C [Psychrobacter arcticus 273-4]
gi|71037664|gb|AAZ17972.1| succinate dehydrogenase subunit C [Psychrobacter arcticus 273-4]
Length = 128
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 1 MSSIKNNRPLS-PHLQIYRL--IPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL 57
M ++K+NRP+ P Q+ + P SI+HRI+G V++L PV++ + + N +
Sbjct: 1 MPAVKSNRPIDLPLSQVISVNRSPIAIASILHRISGIVLFLLIPVML---WLLQNSLASP 57
Query: 58 SSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN-IIASI 116
S D + +++ A+ +H + G+++L D+ + + K + I+ +IA+I
Sbjct: 58 ESFETVFDNVLVRFLAWIFVAAIAYHFVMGMKHLFADMGMNEELKSGRAASMISFVIAAI 117
Query: 117 LTVL-IVWII 125
L V VW++
Sbjct: 118 LIVASFVWVM 127
>gi|12832459|dbj|BAB22116.1| unnamed protein product [Mus musculus]
Length = 169
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSS 59
+ +NRPLSPHL IY+ M +S+ HR GS + L V +F + N E L
Sbjct: 45 NTSSNRPLSPHLTIYKWSLPMALSVCHR--GSGIALSGGVSLFGLSALLLPGNFESYLMF 102
Query: 60 LRCYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
++ G ++ F+ + +++H L GIR+L+WD+
Sbjct: 103 VKSLCLGPTLIYSAKFVLVFPLMYHSLNGIRHLLWDLG 140
>gi|119572987|gb|EAW52602.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa, isoform CRA_e [Homo sapiens]
Length = 156
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSS 59
+I +NRPLSPH+ IY M +SI HR TG + L V +F + N E L
Sbjct: 32 NIGSNRPLSPHITIYSWSLPMAMSICHRGTG--IALSAGVSLFGMSALLLPGNFESYLEL 89
Query: 60 LRCYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
++ G ++ F + +++H GIR+L+WD+ L
Sbjct: 90 VKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLK 131
>gi|71908478|ref|YP_286065.1| succinate dehydrogenase subunit C [Dechloromonas aromatica RCB]
gi|71848099|gb|AAZ47595.1| succinate dehydrogenase subunit C [Dechloromonas aromatica RCB]
Length = 129
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RP + L RL VSI+HR++G ++L P++++ F + S ++
Sbjct: 7 KKRPKNLDLTTIRLPLPGKVSILHRVSGVGLFLCLPLLLWLFGASLASPESFSGIKAIAG 66
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI-LTVLIVW 123
+ +V L WA +HH GIR+L+ D+ + ++K+ A + A + + S+ L+ +++W
Sbjct: 67 MFLVKVILAGLIWAFMHHFCAGIRFLLLDLHVGIEKEAARKSAGVVLAVSLPLSAILIW 125
>gi|332219327|ref|XP_003258808.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like isoform 1 [Nomascus leucogenys]
Length = 169
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSS 59
+I +NRPLSPH+ IY M +SI HR TG + L V +F + N E L
Sbjct: 45 NIGSNRPLSPHITIYSWSLPMAMSICHRGTG--IALSAGVSLFGMSALLLPGNFESYLEL 102
Query: 60 LRCYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
++ G ++ F + +++H GIR+L+WD+ L
Sbjct: 103 VKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLVWDLGKGLK 144
>gi|322794003|gb|EFZ17241.1| hypothetical protein SINV_07470 [Solenopsis invicta]
Length = 148
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 22/112 (19%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL---SS 59
+++ RPLSPHL IY++ T +SI HR TG ++ + + G TL
Sbjct: 24 NMRLKRPLSPHLSIYQVQLTTVLSITHRTTG---------IMLASYAMFLGLGTLFIPGG 74
Query: 60 LRCYMDGSVFEVCL---------FLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ C+++ +V +CL L +H+ GIR+L WD+ + L K
Sbjct: 75 IPCFIE-TVDNLCLPLPVLFAGKTLLALPATYHLFNGIRHLAWDLGMFLSIK 125
>gi|296818369|ref|XP_002849521.1| succinate dehydrogenase cytochrome b560 subunit [Arthroderma otae
CBS 113480]
gi|238839974|gb|EEQ29636.1| succinate dehydrogenase cytochrome b560 subunit [Arthroderma otae
CBS 113480]
Length = 197
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSV----VYL-GTPVVVFWFFCIANGEHTLSSLR 61
RPLSPHL IY+ T S + RITG V +YL G + +F +LS+
Sbjct: 73 KRPLSPHLAIYKWQVTSVNSSLQRITGVVLSGGLYLFGISYLASSYFGWGLSSESLSAAM 132
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASIL 117
+ S F+ W ++ H +R+L WD+ K Q ++ SI+
Sbjct: 133 ASLPWSGKAAVKFVIAWPLMFHTFNNLRHLAWDMGKGFAMKTVCQTGYLSAGMSII 188
>gi|121605923|ref|YP_983252.1| succinate dehydrogenase, cytochrome b subunit [Polaromonas
naphthalenivorans CJ2]
gi|120594892|gb|ABM38331.1| succinate dehydrogenase subunit C [Polaromonas naphthalenivorans
CJ2]
Length = 148
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD-------GSVF 69
YRL VSI+HRI+G +++L P +++ F + E + + + G ++
Sbjct: 27 YRLPLAGLVSILHRISGFIMFLLMPFIIWMFDTSISSEISFDRFKAAFNVGMLGVPGILW 86
Query: 70 EVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMAKINIIASI 116
++ WA +HH L G+R+L D S + K Q A + SI
Sbjct: 87 KLVALALIWAYLHHFLAGLRHLWMDASHEAVSKDFGRQSAAFTLAVSI 134
>gi|299470359|emb|CBN78408.1| SDH3, succinate dehydrogenase subunit 3 [Ectocarpus siliculosus]
Length = 176
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RP+SPH+ IY P SI +R+TG + G + + +S+L
Sbjct: 58 RTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGATLVGCDAAGLMSALGSSG 117
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWD 94
G ++ + ++ +++H LG +R+ +WD
Sbjct: 118 VGPAVKLAV---SFPLVYHYLGAVRHTVWD 144
>gi|149191108|ref|ZP_01869367.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio shilonii AK1]
gi|148835036|gb|EDL52014.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio shilonii AK1]
Length = 126
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HR++G + ++ ++++ + + +
Sbjct: 4 RKSRPVNLDLQTIRFPITAIASILHRVSGVITFVSIGILLWLLSKSLSSPIGFAEAADIV 63
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA----SILTVL 120
DG + L+ A+ +H++GG+R+LI D+ + + T+ AK+ I S+L +
Sbjct: 64 DGFFVKFILWGILTALAYHIVGGVRHLIMDLGYFEELESGTKSAKVAFIVTGVLSLLAGV 123
Query: 121 IVW 123
+VW
Sbjct: 124 LVW 126
>gi|323529177|ref|YP_004231329.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
CCGE1001]
gi|323386179|gb|ADX58269.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
CCGE1001]
Length = 138
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 2 SSIKNNRP------LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
++K RP + L YRL VSI+HR++G ++++ P +++ F E
Sbjct: 3 EAVKKPRPEFRNIGIGQILTAYRLPLAGRVSILHRVSGGLLFVALPFLLYLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMA-KINII 113
+ + + + ++ + + WA + H G+R+L+ D + + K+ Q + + ++
Sbjct: 63 SFEGFKGFFSNLIVKLIVLVLAWAYMFHFCAGVRHLLMDTNHEAVTKEKGKQTSIVVFVV 122
Query: 114 ASILTV 119
+S+LT+
Sbjct: 123 SSLLTL 128
>gi|307130093|ref|YP_003882109.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Dickeya dadantii 3937]
gi|306527622|gb|ADM97552.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Dickeya dadantii 3937]
Length = 129
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
S+K RP++ LQ + T SI+HR++G + ++ ++++ + + +
Sbjct: 3 KSVKKQRPVNLDLQTIQFPVTAIASILHRVSGVITFVAVGILLWLLGLSLSSQEGFAQAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIA-TQMAK----INIIASI 116
MD + + ++ A+ +H++GG+R+L+ D + A ++ AK I ++ S
Sbjct: 63 AIMDSFIVKFIVWGILTALAYHIVGGLRHLLMDFGYIEENFAAGSRSAKLSFIITVVLSF 122
Query: 117 LTVLIVW 123
L ++VW
Sbjct: 123 LAGVLVW 129
>gi|302381553|ref|YP_003817376.1| succinate dehydrogenase, cytochrome b556 subunit [Brevundimonas
subvibrioides ATCC 15264]
gi|302192181|gb|ADK99752.1| succinate dehydrogenase, cytochrome b556 subunit [Brevundimonas
subvibrioides ATCC 15264]
Length = 144
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHLQ +R TM SI+ R T + +G + V W +A G +S + GS
Sbjct: 18 RPLSPHLQTWRWHITMTASILFRFTIGAISVGALIGVAWLAAVAFGPAAYAS-ALGLAGS 76
Query: 68 VFEVCL-FLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
F + + F T + +L G R+LI D L K A ++ I + +
Sbjct: 77 WFGLIVGFGLTVVLFSLLLNGGRHLINDTGRGLTIKSADLLSNIAVYGPV 126
>gi|239993980|ref|ZP_04714504.1| succinate dehydrogenase, cytochrome b subunit [Alteromonas
macleodii ATCC 27126]
Length = 124
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ L + P+ SI+HR+TG ++ V++ + + + ++
Sbjct: 1 MKKQRPVNLELNTIKFPPSAISSILHRVTGVAMFFALLFVIWAWAVSVHSPEGFADVQAI 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
MDG + A+ +H+LGG+R+++ D+ + + AK V+ +W
Sbjct: 61 MDGFFGKFVAIGTASALTYHILGGLRHVVMDLGHWEELESGNTSAK--------AVIALW 112
Query: 124 IIKDIV 129
++ +V
Sbjct: 113 VVLTVV 118
>gi|91077182|ref|XP_972413.1| PREDICTED: similar to succinate dehydrogenase [Tribolium castaneum]
gi|270002816|gb|EEZ99263.1| hypothetical protein TcasGA2_TC000992 [Tribolium castaneum]
Length = 173
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSV-----VYLGTPVVVFWFFCIANGEHTL 57
+++ RP SPHL IY T +SI HR TG + + GT VV H L
Sbjct: 49 NMQLGRPQSPHLTIYSFQLTSMLSITHRATGMMLAGYAIMWGTGAVVLPDTI----PHYL 104
Query: 58 SSL-RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+L + ++ G V + F+ + + +H GIR+L WD+ L K
Sbjct: 105 DALQQAHVGGFVLSMGKFMLAFPMCYHFWNGIRHLAWDLGRFLTIK 150
>gi|325089641|gb|EGC42951.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
capsulatus H88]
Length = 194
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIAN---GEHTLSSLRCY 63
NRP+SPH+ IYR T +S++HR TG + L P +F+ A+ G H S+
Sbjct: 64 NRPVSPHISIYRPQITSVLSLLHRNTG--LLLSGPFYLFFAAYAASPWLGWHIDSTSMAA 121
Query: 64 MDG--SVFEVCLFLYTWAV--IHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
G V L T A+ H + G+R+L+WD+ K + + I SI +
Sbjct: 122 SFGILPVAAKVLLKTTAALPFTFHCINGVRHLVWDLGRGFSNKQVAKSGRTVIGLSISSA 181
Query: 120 LIV 122
L++
Sbjct: 182 LLL 184
>gi|154281033|ref|XP_001541329.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411508|gb|EDN06896.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 226
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIAN---GEHTLSSLRCY 63
NRP+SPH+ IY+ T +S++HR TG L P +F+ A+ G H S+
Sbjct: 81 NRPVSPHISIYQPQITSVLSLLHRNTG---LLSGPFYLFFAAYAASPWLGWHIDSTSMAA 137
Query: 64 MDGSV-FEVCLFLYTWAVIH---HMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
G++ + L T A + H + G+R+L+WD+ K T+ + I SI +
Sbjct: 138 SFGTLPVAAKVLLKTTAALPFTFHCINGVRHLVWDLGRGFSNKQVTKSGRTVIGLSISSA 197
Query: 120 LIV 122
L++
Sbjct: 198 LLL 200
>gi|262276218|ref|ZP_06054027.1| succinate dehydrogenase cytochrome b-556 subunit [Grimontia
hollisae CIP 101886]
gi|262220026|gb|EEY71342.1| succinate dehydrogenase cytochrome b-556 subunit [Grimontia
hollisae CIP 101886]
Length = 130
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K +RP++ LQ R T SI HR++G + ++ ++++ + +
Sbjct: 7 VKKSRPVNLDLQTIRFPITAIASITHRVSGVITFISVAILLWLLSLSLSSPSGFEAASDI 66
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN-IIASILTVL-- 120
++ + L+ A+ +H++GGIR+L+ D+ + + +Q AK+ II ++L+VL
Sbjct: 67 VNSFFAKFVLWGILTALAYHIVGGIRHLLMDMGHFEELESGSQSAKVGFIITAVLSVLAG 126
Query: 121 -IVW 123
+VW
Sbjct: 127 ILVW 130
>gi|307726616|ref|YP_003909829.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
CCGE1003]
gi|307587141|gb|ADN60538.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
CCGE1003]
Length = 138
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 2 SSIKNNRP------LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
++K RP + L YRL VSI+HR++G ++++ P +++ F E
Sbjct: 3 EAVKKPRPEFRNIGIGQILTAYRLPLAGRVSILHRVSGGLLFVALPFLLYLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMA-KINII 113
+ + + + ++ + + WA + H G+R+L+ D + + K+ Q + + ++
Sbjct: 63 SFEGFKAFFSNIIVKLIVLVLGWAYMFHFCAGVRHLLMDTNHEAVTKEKGRQTSIVVFVV 122
Query: 114 ASILTV 119
+S+LT+
Sbjct: 123 SSLLTL 128
>gi|283135232|ref|NP_001164371.1| succinate dehydrogenase cytochrome b560 subunit, mitochondrial
[Nasonia vitripennis]
Length = 175
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 16/104 (15%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVY-------LGTPVVVFWFFCI--AN 52
+++ RPLSPHL IY+L T +S+ HR TG V+ LGT V C+ A
Sbjct: 50 KNMRLKRPLSPHLTIYQLQLTSMLSVTHRGTGIVLSSYAMILGLGTLFVPGGVPCMVQAI 109
Query: 53 GEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
L S Y+ ++F + + +H L GIR+L WD+
Sbjct: 110 AAWGLPSAVLYLGKAMF-------VYPLTYHYLNGIRHLAWDLG 146
>gi|294787718|ref|ZP_06752962.1| succinate dehydrogenase, cytochrome b556 subunit [Simonsiella
muelleri ATCC 29453]
gi|294484011|gb|EFG31694.1| succinate dehydrogenase, cytochrome b556 subunit [Simonsiella
muelleri ATCC 29453]
Length = 133
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 25 VSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHM 84
VSI+HR TG ++L P ++ + + + D ++ L+ WA IHH+
Sbjct: 31 VSILHRATGVALFLLLPFLLALLSGSRSSGEDFEYYKAWADNWFIKLILWGVLWAFIHHL 90
Query: 85 LGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
GIR+LI D + D + A + A+I +IA+ +T ++
Sbjct: 91 FAGIRFLIIDAHIGTDLQTARKSARIVLIAAAVTAFVL 128
>gi|212535344|ref|XP_002147828.1| succinate dehydrogenase cytochrome b560 subunit [Penicillium
marneffei ATCC 18224]
gi|210070227|gb|EEA24317.1| succinate dehydrogenase cytochrome b560 subunit [Penicillium
marneffei ATCC 18224]
Length = 186
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIAN--GEHTLSSLRCYM 64
RP+SPHL IYR T + S +HRITGS G + +A G H S+
Sbjct: 63 KRPVSPHLSIYRPQITWYASALHRITGSAAS-GALYAFAAAYLVAPVFGWHLESASIAAA 121
Query: 65 DGSV-FEVCLFLY---TWAVIHHMLGGIRYLIWDVSLCLDKK 102
G++ F F+ +H + G+R+LIWD L K
Sbjct: 122 FGALPFAAKFFVKLGLAMPFTYHCINGVRHLIWDTGRLLTNK 163
>gi|48146321|emb|CAG33383.1| SDHC [Homo sapiens]
Length = 169
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSS 59
+I +NRPLSPH+ IY M +SI HR TG + L V +F + N E L
Sbjct: 45 NIGSNRPLSPHITIYSWSLPMAMSICHRGTG--IALSAGVSLFGMSALLLPGNFESYLEL 102
Query: 60 LRCYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
++ G ++ F + +++H GIR+L+WD+ L
Sbjct: 103 VKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLK 144
>gi|93004938|ref|YP_579375.1| succinate dehydrogenase, cytochrome b subunit [Psychrobacter
cryohalolentis K5]
gi|92392616|gb|ABE73891.1| succinate dehydrogenase subunit C [Psychrobacter cryohalolentis K5]
Length = 128
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 1 MSSIKNNRPLS-PHLQIYRL--IPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL 57
M ++K+NRP+ P Q+ + P SI+HRI+G +++L PV++ + + N +
Sbjct: 1 MPAVKSNRPIDLPLSQVISVNRSPIAIASILHRISGIILFLLIPVML---WLLQNSLASP 57
Query: 58 SSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN-IIASI 116
S D + +++ A+ +H + G+++L D+ + + K + I+ +IA+I
Sbjct: 58 ESFETVFDNVLVRFLAWIFVAAIAYHFVMGMKHLFADMGMNEELKSGRAASMISFVIAAI 117
Query: 117 LTVL-IVWII 125
L V VW++
Sbjct: 118 LIVASFVWVM 127
>gi|121595114|ref|YP_987010.1| succinate dehydrogenase subunit C [Acidovorax sp. JS42]
gi|120607194|gb|ABM42934.1| succinate dehydrogenase subunit C [Acidovorax sp. JS42]
Length = 144
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 14/136 (10%)
Query: 1 MSSIKNNRPLSPHLQI------YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE 54
M+ + RP ++ I YRL +VSI+HR +G +++L P V++ F + E
Sbjct: 1 MTELAKKRPEYRNINIFNDVRTYRLPAAGWVSILHRASGMIMFLLLPFVLWMFDTSVSSE 60
Query: 55 HTLSSLRC-------YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQ 106
+ ++ G ++ WA +HH + G+R+L DVS + K+
Sbjct: 61 ISFGRFTSAFTAGLGFVPGWFVKLVALALIWAYLHHFIAGLRHLWMDVSHEAVSKEFGKS 120
Query: 107 MAKINIIASILTVLIV 122
A + ++ SI L++
Sbjct: 121 SAIVTLVLSIGLTLVL 136
>gi|145299317|ref|YP_001142158.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Aeromonas salmonicida subsp. salmonicida A449]
gi|142852089|gb|ABO90410.1| succinate dehydrogenase cytochrome b556 subunit [Aeromonas
salmonicida subsp. salmonicida A449]
Length = 129
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 65/127 (51%), Gaps = 5/127 (3%)
Query: 2 SSIKN-NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
++KN RP++ LQ T SI+HR++G + ++ ++++ ++
Sbjct: 3 KAVKNKQRPVNLDLQTISFPVTAIASILHRVSGVITFVALSILLWMLGTSLASPEGFETV 62
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN-IIASILTV 119
MD + + L+ A+ +H++GG+R+L+ D+ + + Q A++ +I +IL V
Sbjct: 63 VSIMDNFLVKFVLWGILTALAYHIVGGLRHLVMDMGYWEELESGNQSARVAFVITAILAV 122
Query: 120 L---IVW 123
L +VW
Sbjct: 123 LAGVLVW 129
>gi|16759671|ref|NP_455288.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhi str.
CT18]
gi|16764102|ref|NP_459717.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|29142556|ref|NP_805898.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhi str.
Ty2]
gi|56414151|ref|YP_151226.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Paratyphi A
str. ATCC 9150]
gi|62179307|ref|YP_215724.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|197363073|ref|YP_002142710.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Paratyphi A
str. AKU_12601]
gi|205351996|ref|YP_002225797.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Gallinarum
str. 287/91]
gi|207856176|ref|YP_002242827.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Enteritidis
str. P125109]
gi|224582547|ref|YP_002636345.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Paratyphi C
strain RKS4594]
gi|54036973|sp|P63726|DHSC_SALTI RecName: Full=Succinate dehydrogenase cytochrome b556 subunit;
Short=Cytochrome b-556
gi|54040872|sp|P63725|DHSC_SALTY RecName: Full=Succinate dehydrogenase cytochrome b556 subunit;
Short=Cytochrome b-556
gi|25284651|pir||AH0590 succinate dehydrogenase cytochrome b-556 chain [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16419242|gb|AAL19676.1| succinate dehydrogenase, cytochrome b556 [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|16501964|emb|CAD05194.1| succinate dehydrogenase cytochrome b-556 subunit [Salmonella
enterica subsp. enterica serovar Typhi]
gi|29138187|gb|AAO69758.1| succinate dehydrogenase cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Typhi str. Ty2]
gi|56128408|gb|AAV77914.1| succinate dehydrogenase cytochrome b-556 subunit [Salmonella
enterica subsp. enterica serovar Paratyphi A str. ATCC
9150]
gi|62126940|gb|AAX64643.1| succinate dehydrogenase, cytochrome b556 [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|197094550|emb|CAR60070.1| succinate dehydrogenase cytochrome b-556 subunit [Salmonella
enterica subsp. enterica serovar Paratyphi A str.
AKU_12601]
gi|205271777|emb|CAR36611.1| succinate dehydrogenase cytochrome b-556 subunit [Salmonella
enterica subsp. enterica serovar Gallinarum str. 287/91]
gi|206707979|emb|CAR32268.1| succinate dehydrogenase cytochrome b-556 subunit [Salmonella
enterica subsp. enterica serovar Enteritidis str.
P125109]
gi|224467074|gb|ACN44904.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Paratyphi C
strain RKS4594]
gi|261245995|emb|CBG23797.1| succinate dehydrogenase cytochrome b-556 subunit [Salmonella
enterica subsp. enterica serovar Typhimurium str.
D23580]
gi|267992470|gb|ACY87355.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhimurium
str. 14028S]
gi|301157323|emb|CBW16812.1| succinate dehydrogenase cytochrome b-556 subunit [Salmonella
enterica subsp. enterica serovar Typhimurium str.
SL1344]
gi|322713775|gb|EFZ05346.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
gi|323129042|gb|ADX16472.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhimurium
str. 4/74]
gi|326622456|gb|EGE28801.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Dublin str.
3246]
gi|326627036|gb|EGE33379.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Gallinarum
str. 9]
gi|332987669|gb|AEF06652.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhimurium
str. UK-1]
Length = 129
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ +
Sbjct: 4 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFIAVGILLWLLGTSLSSPEGFQQAAD 63
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK-----INIIASIL 117
MDG + + ++ A+ +H++ GIR+++ D + A Q + I ++ S+L
Sbjct: 64 IMDGFIVKFIMWGILTALAYHVIVGIRHMLMDFGYLEETFEAGQRSAKISFVITVVLSLL 123
Query: 118 TVLIVW 123
++VW
Sbjct: 124 AGVLVW 129
>gi|240279376|gb|EER42881.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
capsulatus H143]
Length = 188
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIAN---GEHTLSSLRCY 63
NRP+SPH+ IYR T +S++HR TG + L P +F+ A+ G H S+
Sbjct: 58 NRPVSPHISIYRPQITSVLSLLHRNTG--LLLSGPFYLFFAAYAASPWLGWHIDSTSMAA 115
Query: 64 MDG--SVFEVCLFLYTWAV--IHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
G V L T A+ H + G+R+L+WD+ K + + I SI +
Sbjct: 116 SFGILPVAAKVLLKTTAALPFTFHCINGVRHLVWDLGRGFSNKQVAKSGRTVIGLSISSA 175
Query: 120 LIV 122
L++
Sbjct: 176 LLL 178
>gi|126311342|ref|XP_001381718.1| PREDICTED: similar to QPS1 [Monodelphis domestica]
Length = 264
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSS 59
+ +NRPLSPH+ IY M +SI HR +G + G V +F + N E +
Sbjct: 140 NTNSNRPLSPHITIYSWSLPMAMSICHRASGIALSAG--VSLFGLAALLLPGNFESHVEL 197
Query: 60 LRCYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
L+ G ++ F +++H GIR+L WD+ + L KI Q+ + ++ LT
Sbjct: 198 LKSLSLGPALIHTAKFALVSPLMYHTWNGIRHLTWDLGMGL--KI-PQLYQSGVVVLALT 254
Query: 119 VL 120
VL
Sbjct: 255 VL 256
>gi|307203720|gb|EFN82680.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
[Harpegnathos saltator]
Length = 140
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG----EHTLS 58
+++ RP+SPHL IY +SI HR TG ++ + CI G L+
Sbjct: 16 NMRLKRPMSPHLTIYEFPLPAMLSITHRTTGIILSSYAMFLGLGTLCIPGGIPCAIEILN 75
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
L Y+ + V L + H+L GIR+L WD+ + L K
Sbjct: 76 DL--YIPSLILFVGKTLLALPITFHILNGIRHLAWDLGMFLKIK 117
>gi|85544002|pdb|1YQ3|C Chain C, Avian Respiratory Complex Ii With Oxaloacetate And
Ubiquinone
gi|85544006|pdb|1YQ4|C Chain C, Avian Respiratory Complex Ii With 3-Nitropropionate And
Ubiquinone
Length = 141
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-EHTLSSLRC- 62
K++RPLSPH+ IY+ M +SI HR TG + LG + + H ++ ++
Sbjct: 18 KSSRPLSPHISIYKWSLPMAMSITHRGTGVALSLGVSLFSLAALLLPEQFPHYVAVVKSL 77
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ ++ F + + +H GIR+L+WD+ +Q+ + ++ ILT+L
Sbjct: 78 SLSPALIYSAKFALVFPLSYHTWNGIRHLVWDMGKGFK---LSQVEQSGVVVLILTLL 132
>gi|4506863|ref|NP_002992.1| succinate dehydrogenase cytochrome b560 subunit, mitochondrial
isoform 1 precursor [Homo sapiens]
gi|5915811|sp|Q99643|C560_HUMAN RecName: Full=Succinate dehydrogenase cytochrome b560 subunit,
mitochondrial; AltName: Full=Integral membrane protein
CII-3; AltName: Full=QPs-1; Short=QPs1; AltName:
Full=Succinate dehydrogenase complex subunit C; AltName:
Full=Succinate-ubiquinone oxidoreductase cytochrome B
large subunit; Short=CYBL; Flags: Precursor
gi|1814226|gb|AAB41838.1| integral membrane protein CII-3 [Homo sapiens]
gi|3366669|gb|AAC27993.1| succinate dehydrogenase subunit C [Homo sapiens]
gi|3370989|dbj|BAA31998.1| cytochrome b large subunit of complex II [Homo sapiens]
gi|18088742|gb|AAH20808.1| Succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa [Homo sapiens]
gi|21708000|gb|AAH33626.1| Succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa [Homo sapiens]
gi|42542834|gb|AAH66329.1| Succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa [Homo sapiens]
gi|55665931|emb|CAH70271.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa [Homo sapiens]
gi|119572985|gb|EAW52600.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa, isoform CRA_c [Homo sapiens]
Length = 169
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSS 59
+I +NRPLSPH+ IY M +SI HR TG + L V +F + N E L
Sbjct: 45 NIGSNRPLSPHITIYSWSLPMAMSICHRGTG--IALSAGVSLFGMSALLLPGNFESYLEL 102
Query: 60 LRCYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
++ G ++ F + +++H GIR+L+WD+ L
Sbjct: 103 VKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLK 144
>gi|170691023|ref|ZP_02882189.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
graminis C4D1M]
gi|170144272|gb|EDT12434.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
graminis C4D1M]
Length = 138
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 2 SSIKNNRP------LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
++K RP + L YRL VSI+HR++G ++++ P +++ F E
Sbjct: 3 EAVKKPRPEFRNIGIGQILTAYRLPLAGRVSILHRLSGGLLFVALPFLLYLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMA-KINII 113
+ + ++ + ++ + WA + H G+R+L+ D + + K+ Q + + ++
Sbjct: 63 SFEVFKGFLSNLIVKLITLVLAWAYLFHFCAGVRHLLMDTNHEAVTKEKGKQTSIVVFVV 122
Query: 114 ASILTV 119
+S+LT+
Sbjct: 123 SSLLTI 128
>gi|110590576|pdb|2H88|C Chain C, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
gi|110590580|pdb|2H88|P Chain P, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
gi|110590584|pdb|2H89|C Chain C, Avian Respiratory Complex Ii With Malonate Bound
Length = 140
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-EHTLSSLRC- 62
K++RPLSPH+ IY+ M +SI HR TG + LG + + H ++ ++
Sbjct: 18 KSSRPLSPHISIYKWSLPMAMSITHRGTGVALSLGVSLFSLAALLLPEQFPHYVAVVKSL 77
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ ++ F + + +H GIR+L+WD+ +Q+ + ++ ILT+L
Sbjct: 78 SLSPALIYSAKFALVFPLSYHTWNGIRHLVWDMGKGFK---LSQVEQSGVVVLILTLL 132
>gi|323529267|ref|YP_004231419.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
CCGE1001]
gi|323386269|gb|ADX58359.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
CCGE1001]
Length = 138
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 2 SSIKNNRP------LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
++K RP + L YRL VSI+HR++G ++++ P +++ F E
Sbjct: 3 ETLKKPRPEFRNIGIGQILTAYRLPLAGRVSILHRVSGGLLFVALPFLLYLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMA-KINII 113
+ + + + ++ + + WA + H G+R+L+ D + + K+ Q + + ++
Sbjct: 63 SFEGFKGFFSNLIVKLIVLVLAWAYMFHFCAGVRHLLMDTNHEAVTKEKGKQTSIVVFVV 122
Query: 114 ASILTV 119
+S+LT+
Sbjct: 123 SSLLTL 128
>gi|161615042|ref|YP_001589007.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Paratyphi B
str. SPB7]
gi|167552850|ref|ZP_02346601.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|167993008|ref|ZP_02574103.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|168230610|ref|ZP_02655668.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|168238875|ref|ZP_02663933.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|168240583|ref|ZP_02665515.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168264335|ref|ZP_02686308.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|168467712|ref|ZP_02701549.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|168820140|ref|ZP_02832140.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|194444043|ref|YP_002039969.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Newport
str. SL254]
gi|194451536|ref|YP_002044762.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Heidelberg
str. SL476]
gi|194470195|ref|ZP_03076179.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194737993|ref|YP_002113838.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197248270|ref|YP_002145690.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Agona str.
SL483]
gi|197265498|ref|ZP_03165572.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|198243969|ref|YP_002214700.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|200390971|ref|ZP_03217582.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204930001|ref|ZP_03221022.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|213021698|ref|ZP_03336145.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhi str.
404ty]
gi|213053349|ref|ZP_03346227.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhi str.
E00-7866]
gi|213425381|ref|ZP_03358131.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhi str.
E02-1180]
gi|213581387|ref|ZP_03363213.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhi str.
E98-0664]
gi|213615564|ref|ZP_03371390.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhi str.
E98-2068]
gi|213851935|ref|ZP_03381467.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhi str.
M223]
gi|238911662|ref|ZP_04655499.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Tennessee
str. CDC07-0191]
gi|161364406|gb|ABX68174.1| hypothetical protein SPAB_02802 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194402706|gb|ACF62928.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194409840|gb|ACF70059.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194456559|gb|EDX45398.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194713495|gb|ACF92716.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|195629175|gb|EDX48543.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|197211973|gb|ACH49370.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197243753|gb|EDY26373.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197288360|gb|EDY27741.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197938485|gb|ACH75818.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|199603416|gb|EDZ01962.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204320995|gb|EDZ06196.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205322576|gb|EDZ10415.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205328915|gb|EDZ15679.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205334896|gb|EDZ21660.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|205339890|gb|EDZ26654.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|205343208|gb|EDZ29972.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205347161|gb|EDZ33792.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|312911758|dbj|BAJ35732.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhimurium
str. T000240]
gi|320085000|emb|CBY94789.1| succinate dehydrogenase, cytochrome b556 [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
gi|322615835|gb|EFY12753.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 315996572]
gi|322621231|gb|EFY18088.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 495297-1]
gi|322623651|gb|EFY20489.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 495297-3]
gi|322628923|gb|EFY25703.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 495297-4]
gi|322634903|gb|EFY31633.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 515920-1]
gi|322636569|gb|EFY33273.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 515920-2]
gi|322641778|gb|EFY38411.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 531954]
gi|322647810|gb|EFY44290.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. NC_MB110209-0054]
gi|322651860|gb|EFY48229.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. OH_2009072675]
gi|322652643|gb|EFY48992.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. CASC_09SCPH15965]
gi|322658451|gb|EFY54714.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 19N]
gi|322664946|gb|EFY61137.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 81038-01]
gi|322668384|gb|EFY64540.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. MD_MDA09249507]
gi|322670528|gb|EFY66661.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 414877]
gi|322675268|gb|EFY71344.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 366867]
gi|322679694|gb|EFY75735.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 413180]
gi|322684830|gb|EFY80829.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 446600]
gi|323193148|gb|EFZ78367.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 609458-1]
gi|323200599|gb|EFZ85674.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 556150-1]
gi|323202271|gb|EFZ87319.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 609460]
gi|323205462|gb|EFZ90428.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 507440-20]
gi|323213499|gb|EFZ98292.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 556152]
gi|323215333|gb|EGA00078.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. MB101509-0077]
gi|323220913|gb|EGA05347.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. MB102109-0047]
gi|323228078|gb|EGA12214.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. MB110209-0055]
gi|323231016|gb|EGA15132.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. MB111609-0052]
gi|323234151|gb|EGA18240.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 2009083312]
gi|323238154|gb|EGA22212.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 2009085258]
gi|323243589|gb|EGA27607.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 315731156]
gi|323247387|gb|EGA31346.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2009159199]
gi|323251375|gb|EGA35247.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008282]
gi|323258486|gb|EGA42158.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008283]
gi|323260640|gb|EGA44249.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008284]
gi|323264712|gb|EGA48214.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008285]
gi|323270976|gb|EGA54411.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008287]
Length = 134
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ +
Sbjct: 9 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFIAVGILLWLLGTSLSSPEGFQQAAD 68
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK-----INIIASIL 117
MDG + + ++ A+ +H++ GIR+++ D + A Q + I ++ S+L
Sbjct: 69 IMDGFIVKFIMWGILTALAYHVIVGIRHMLMDFGYLEETFEAGQRSAKISFVITVVLSLL 128
Query: 118 TVLIVW 123
++VW
Sbjct: 129 AGVLVW 134
>gi|289742765|gb|ADD20130.1| succinate dehydrogenase cytochrome b subunit [Glossina morsitans
morsitans]
Length = 173
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 18/106 (16%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLG----------TPVVVFWFFCIANGEHT 56
R +SPHL IY+ T +S+ HR TG V+ G +P + + + G H
Sbjct: 53 GREMSPHLTIYQPQLTSLLSVTHRGTGMVLTAGVWALGLAALISPQDIGNYASVIEGLH- 111
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ G F++ + + H G+R+L+WD L K
Sbjct: 112 -------LGGGTLTFLKFMFAFPLAFHTANGVRHLLWDTGRFLKIK 150
>gi|188534435|ref|YP_001908232.1| Succinate dehydrogenase cytochrome b-556 subunit [Erwinia
tasmaniensis Et1/99]
gi|188029477|emb|CAO97354.1| Succinate dehydrogenase cytochrome b-556 subunit [Erwinia
tasmaniensis Et1/99]
Length = 129
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ L R T SI+HR++G + ++ ++++ +
Sbjct: 3 KTVKKQRPVNLDLSTIRFPLTAIASILHRVSGVITFVSIGILLWLLGLSLSSPEGFLQAS 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD----KKIATQMA-KINIIASI 116
MD + + ++ A+ +H+ GGIR+++ D L + K + Q+A I ++ SI
Sbjct: 63 AVMDSFIAKFIMWGILTALAYHIAGGIRHMMMDFGLLGETLETGKFSAQIAFGITVVLSI 122
Query: 117 LTVLIVW 123
L ++VW
Sbjct: 123 LAGVLVW 129
>gi|220934637|ref|YP_002513536.1| succinate dehydrogenase, cytochrome b556 subunit [Thioalkalivibrio
sp. HL-EbGR7]
gi|219995947|gb|ACL72549.1| succinate dehydrogenase, cytochrome b556 subunit [Thioalkalivibrio
sp. HL-EbGR7]
Length = 126
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RP+ +L RL SI HRI+G +++L P+ +F F GE + +
Sbjct: 3 REGRPVFLNLLKIRLPVPGVASIAHRISGVLLFLAIPLFLFIFQRSLQGEAGYAEALALL 62
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA-KINIIASILTVLIVW 123
+ + + W+++HH L GIRYL+ DV + +++ A + A + I+A +LTV+I+
Sbjct: 63 RHPLVMLISLVLLWSLLHHWLAGIRYLLIDVDVGVERTAARKSAWTVLILAPVLTVIILG 122
Query: 124 II 125
++
Sbjct: 123 VL 124
>gi|289209041|ref|YP_003461107.1| succinate dehydrogenase, cytochrome b556 subunit [Thioalkalivibrio
sp. K90mix]
gi|288944672|gb|ADC72371.1| succinate dehydrogenase, cytochrome b556 subunit [Thioalkalivibrio
sp. K90mix]
Length = 126
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RP+ L+ RL VSI+HRITG + L PV+++ + + +
Sbjct: 6 RPVFLDLRKIRLPLNAVVSILHRITGIFLILSIPVLLWLLDRSLASPEGFAQVAAIIGHP 65
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
V L + W ++HH+ GIR+L+ + + D+ + + A+ + A+I L VW+
Sbjct: 66 VGLALLLIGLWWLLHHLFAGIRFLLMEFGIGEDRAGSLRTARDALYAAIFATLAVWL 122
>gi|260811592|ref|XP_002600506.1| hypothetical protein BRAFLDRAFT_119291 [Branchiostoma floridae]
gi|229285793|gb|EEN56518.1| hypothetical protein BRAFLDRAFT_119291 [Branchiostoma floridae]
Length = 181
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSV----VYLGT-------PVVVFWFFCIA 51
+ + RP+SPHL IY+ T +SI HR TG+ VY + P++ + F I
Sbjct: 52 NAQKKRPMSPHLTIYKPQLTAMLSITHRGTGAAMAGFVYAFSVGMLVVNPLLGWDFPTIF 111
Query: 52 NGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKI 103
N +L + G + C+ W + +H + GIR+L WD D K+
Sbjct: 112 NFIKSLEIHPWLILGG--KWCM---AWPISYHAMNGIRHLNWDAGYGFDMKV 158
>gi|22126947|ref|NP_670370.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia pestis KIM 10]
gi|45440881|ref|NP_992420.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia pestis biovar Microtus str. 91001]
gi|51595487|ref|YP_069678.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia pseudotuberculosis IP 32953]
gi|108806584|ref|YP_650500.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia pestis Antiqua]
gi|108813049|ref|YP_648816.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia pestis Nepal516]
gi|145599853|ref|YP_001163929.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia pestis Pestoides F]
gi|149366891|ref|ZP_01888925.1| succinate dehydrogenase cytochrome b-556 subunit [Yersinia pestis
CA88-4125]
gi|162418632|ref|YP_001605906.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia pestis Angola]
gi|165924731|ref|ZP_02220563.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165938394|ref|ZP_02226952.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Orientalis str. IP275]
gi|166011605|ref|ZP_02232503.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166211616|ref|ZP_02237651.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Antiqua str. B42003004]
gi|167399739|ref|ZP_02305257.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167419466|ref|ZP_02311219.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167424337|ref|ZP_02316090.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|167468943|ref|ZP_02333647.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
FV-1]
gi|170025194|ref|YP_001721699.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia pseudotuberculosis YPIII]
gi|186894540|ref|YP_001871652.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia pseudotuberculosis PB1/+]
gi|218928277|ref|YP_002346152.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia pestis CO92]
gi|229903490|ref|ZP_04518603.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Yersinia pestis Nepal516]
gi|21959988|gb|AAM86621.1|AE013908_4 succinate dehydrogenase, cytochrome b556 [Yersinia pestis KIM 10]
gi|45435739|gb|AAS61297.1| succinate dehydrogenase cytochrome b-556 subunit [Yersinia pestis
biovar Microtus str. 91001]
gi|51588769|emb|CAH20383.1| succinate dehydrogenase cytochrome b-556 subunit [Yersinia
pseudotuberculosis IP 32953]
gi|108776697|gb|ABG19216.1| succinate dehydrogenase subunit C [Yersinia pestis Nepal516]
gi|108778497|gb|ABG12555.1| succinate dehydrogenase subunit C [Yersinia pestis Antiqua]
gi|115346888|emb|CAL19775.1| succinate dehydrogenase cytochrome b-556 subunit [Yersinia pestis
CO92]
gi|145211549|gb|ABP40956.1| succinate dehydrogenase subunit C [Yersinia pestis Pestoides F]
gi|149291265|gb|EDM41340.1| succinate dehydrogenase cytochrome b-556 subunit [Yersinia pestis
CA88-4125]
gi|162351447|gb|ABX85395.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
Angola]
gi|165913772|gb|EDR32391.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Orientalis str. IP275]
gi|165923791|gb|EDR40923.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165989553|gb|EDR41854.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166207387|gb|EDR51867.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Antiqua str. B42003004]
gi|166962207|gb|EDR58228.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167050447|gb|EDR61855.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167057186|gb|EDR66949.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|169751728|gb|ACA69246.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia
pseudotuberculosis YPIII]
gi|186697566|gb|ACC88195.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia
pseudotuberculosis PB1/+]
gi|229679260|gb|EEO75363.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Yersinia pestis Nepal516]
Length = 129
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ LQ R T SI+HR++G + ++ +++ W + ++SS
Sbjct: 3 KTVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILL-WLLGL-----SVSSQE 56
Query: 62 CYMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDV-----SLCLDKKIATQMAKI 110
+M + F+ W ++ +H+ GGIR+L+ D +L + + A +
Sbjct: 57 GFMQAATIMNSFFVKFIFWGILTALAYHICGGIRHLLMDFGYLEENLAVGTRSAQVAMGL 116
Query: 111 NIIASILTVLIVW 123
++ S+L ++VW
Sbjct: 117 TLVLSVLAGVLVW 129
>gi|209731756|gb|ACI66747.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
Length = 170
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSSLR 61
K NRP+SPH+ +Y+ M +SI HR TG V L + F + N + L +
Sbjct: 47 KLNRPMSPHITVYQRSVPMMMSITHRGTG--VGLSGGISAFALLALVLPGNYPYYLDLIH 104
Query: 62 CYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
G ++ + F + + +H L GIR+L WD + + I+ SILT
Sbjct: 105 SLSIGPALLGLAKFGIAFPLSYHTLNGIRHLFWDSGKGFTLPEVYRSGYVVIVLSILT 162
>gi|330829371|ref|YP_004392323.1| succinate dehydrogenase cytochrome b556 subunit [Aeromonas veronii
B565]
gi|328804507|gb|AEB49706.1| Succinate dehydrogenase cytochrome b556 subunit [Aeromonas veronii
B565]
Length = 125
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 4 IKN-NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+KN RP++ LQ T SI+HR++G + ++ ++++ ++
Sbjct: 1 MKNKQRPVNLDLQTISFPVTAIASILHRVSGVITFVALGILLWMLGTSLASPEGFETVVA 60
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN-IIASILTVL 120
MD + ++ L+ A+ +H++GG+R+L+ D+ + + Q A++ +I +IL VL
Sbjct: 61 IMDNFLVKLVLWGILTALAYHIVGGLRHLVMDMGYWEELESGNQSARVAFVITAILAVL 119
>gi|293397238|ref|ZP_06641511.1| succinate dehydrogenase [Serratia odorifera DSM 4582]
gi|291420258|gb|EFE93514.1| succinate dehydrogenase [Serratia odorifera DSM 4582]
Length = 129
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ LQ R T SI+HR++G + ++ +++ W + +LSS
Sbjct: 3 KTVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILL-WLLGM-----SLSSQE 56
Query: 62 CYMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDV-----SLCLDKKIATQMAKI 110
++ + F+ W ++ +H+ GGIR+L+ D SL ++ A +
Sbjct: 57 GFLQAAAIMNSFFVKFIFWGILTALAYHICGGIRHLLMDFGYIEESLAAGQRSAQVAFVL 116
Query: 111 NIIASILTVLIVW 123
+ SIL ++VW
Sbjct: 117 TAVLSILAGVLVW 129
>gi|209737836|gb|ACI69787.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
gi|303658983|gb|ADM15942.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
Length = 170
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSSLR 61
K NRP+SPH+ IY+ M +SI HR TG V L + F + N + L +
Sbjct: 47 KLNRPMSPHITIYQWSVPMMMSITHRGTG--VGLSGGISAFALLALVLPGNYPYYLDLIH 104
Query: 62 CYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
G ++ + F + + +H L GIR+L WD + + I+ SILT
Sbjct: 105 SLSIGPALLGLAKFGIAFPLSYHTLNGIRHLFWDSGKGFTLPEVYRSGYVVIVLSILT 162
>gi|149248046|ref|XP_001528410.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448364|gb|EDK42752.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 189
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFCIANGE 54
+ NRP+SPHLQIY+ T +S HRITG + Y T ++ + F
Sbjct: 63 RKNRPVSPHLQIYQPQLTWIMSSFHRITGVALAGAFYALTCTYAATSILGYHF-----DT 117
Query: 55 HTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWD 94
TL S + ++ L + ++H GIR++IWD
Sbjct: 118 QTLVSAFTSLPVALQYGIKALGAYPFVYHAANGIRHIIWD 157
>gi|307726505|ref|YP_003909718.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
CCGE1003]
gi|307587030|gb|ADN60427.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
CCGE1003]
Length = 167
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 2 SSIKNNRP------LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
++K RP + L YRL VSI+HR++G ++++ P +++ F E
Sbjct: 32 DTLKKPRPEFRNIGIGQILTAYRLPLAGRVSILHRVSGGLLFVALPFLLYLFDQSLTSEL 91
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMA-KINII 113
+ + + + ++ + + WA + H G+R+L+ D + + K+ Q + + ++
Sbjct: 92 SFEGFKAFFSNIIVKLIVLVLGWAYMFHFCAGVRHLLMDTNHEAVTKEKGRQTSIVVFVV 151
Query: 114 ASILTV 119
+S+LT+
Sbjct: 152 SSLLTL 157
>gi|330503170|ref|YP_004380039.1| succinate dehydrogenase subunit C [Pseudomonas mendocina NK-01]
gi|328917456|gb|AEB58287.1| succinate dehydrogenase subunit C [Pseudomonas mendocina NK-01]
Length = 124
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 54/94 (57%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L+ +L T + SI+HRI+G ++++G +++F E + ++
Sbjct: 1 MNSQRPVNLDLRTIKLPVTAYTSILHRISGVILFVGIAILLFGLDKSLTSEEGFAQVKEC 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL 97
+ + + ++ A+++H++ G+R+LI D+ +
Sbjct: 61 LTSPLAKFVIWGLLSALLYHLVAGVRHLIMDMGI 94
>gi|50085920|ref|YP_047430.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter sp.
ADP1]
gi|49531896|emb|CAG69608.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter sp.
ADP1]
Length = 133
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 69/132 (52%), Gaps = 7/132 (5%)
Query: 1 MSSIKNNRP----LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP + L + P SI+HR++G +V+L PV+++ +
Sbjct: 1 MPAVKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLIPVLLWILDKSLSSPEG 60
Query: 57 LSSLRCYMDGSVF-EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
++ + G++ + ++++ +I H + G+++L+ D+ + + A I++I S
Sbjct: 61 FEYVKTVIFGNILVRLIVWVFVAGLIFHFIAGVKHLLADLGFAEELQSGRTAATISLILS 120
Query: 116 ILTVL--IVWII 125
++ ++ VWI+
Sbjct: 121 VIGIIAAFVWIV 132
>gi|19075212|ref|NP_587712.1| succinate dehydrogenase (ubiquinone) cytochrome b subunit
[Schizosaccharomyces pombe 972h-]
gi|74582587|sp|O74882|SDH3_SCHPO RecName: Full=Succinate dehydrogenase cytochrome B subunit,
mitochondrial; Flags: Precursor
gi|3646453|emb|CAA20917.1| succinate dehydrogenase (ubiquinone) cytochrome b subunit
[Schizosaccharomyces pombe]
Length = 180
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIAN------GE 54
++S + +RP SPHL IY T ++S +HRITG VV GT + +A
Sbjct: 51 LASQRVHRPNSPHLTIYEPQLTWYLSSLHRITGCVV-AGTLYAFAMGYLVAPLAGYSLDT 109
Query: 55 HTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
T+S L + + F+ ++ + H+ GIR+LIWD + L K + +
Sbjct: 110 ATISGLIQQVPTWIKVPAKFVISYPLTFHIFNGIRHLIWDTTKELSLKGVYRTGYAVLAL 169
Query: 115 SILT 118
S+LT
Sbjct: 170 SVLT 173
>gi|120554077|ref|YP_958428.1| fumarate reductase, D subunit [Marinobacter aquaeolei VT8]
gi|120323926|gb|ABM18241.1| succinate dehydrogenase subunit C [Marinobacter aquaeolei VT8]
Length = 125
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L + SI+HRI+G ++++G +++ +GE + +
Sbjct: 1 MNSKRPVNLDLGKFHFPLPAITSILHRISGIIIFVGVAFLMYGLDLSLSGEDGFNRVNEL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
+D + ++ ++ A+++H++ GI++L+ D + + + AK I S++ +++
Sbjct: 61 LDSFLAKLIIWGILSALLYHLVAGIKHLLMDAGIGEELESGRLAAKATIAVSVVLIVLAG 120
Query: 122 VWI 124
VW+
Sbjct: 121 VWV 123
>gi|160875744|ref|YP_001555060.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
baltica OS195]
gi|160861266|gb|ABX49800.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
baltica OS195]
gi|315267933|gb|ADT94786.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
baltica OS678]
Length = 131
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP+ LQ R T SI+HR++G ++ ++++ + + ++
Sbjct: 6 QNVKKQRPVHLDLQTIRFPATAIASILHRVSGVIMLFAVGILIWLLNSSLASAESFAGVQ 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK----INIIASIL 117
D V + ++ A+ +H+ GG+R+L+ D + AK + + SI+
Sbjct: 66 SLFDNFVMKFIMWGIMTALAYHLFGGLRHLVMDTGRWEELSSGAASAKAVFALTVAFSII 125
Query: 118 TVLIVW 123
+ VW
Sbjct: 126 AGIWVW 131
>gi|117618735|ref|YP_856454.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Aeromonas hydrophila subsp. hydrophila ATCC 7966]
gi|117560142|gb|ABK37090.1| succinate dehydrogenase, cytochrome b556 subunit [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
Length = 129
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 65/127 (51%), Gaps = 5/127 (3%)
Query: 2 SSIKN-NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
++KN RP++ LQ T SI+HR++G + ++ ++++ ++
Sbjct: 3 KAVKNKQRPVNLDLQTISFPVTAIASILHRVSGVITFVALSILLWMLGTSLASPEGFETV 62
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN-IIASILTV 119
MD + + L+ A+ +H++GG+R+L+ D+ + + Q A++ +I ++L V
Sbjct: 63 VSIMDNFLVKFVLWGILTALAYHIVGGLRHLVMDMGYWEELESGNQSARVAFVITAVLAV 122
Query: 120 L---IVW 123
L +VW
Sbjct: 123 LAGVLVW 129
>gi|297493990|gb|ADI40717.1| succinate dehydrogenase complex subunit C [Miniopterus
schreibersii]
Length = 139
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSSLRC 62
+NRPLSPH+ IY M +SI HR TG V L V +F + N E L ++
Sbjct: 32 SNRPLSPHITIYSWSLPMAMSICHRGTG--VALSAGVSLFGLSALLLPGNFESHLELVKS 89
Query: 63 YMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
G ++ F + +++H GIR+L+WD+ L
Sbjct: 90 LCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLK 128
>gi|146282234|ref|YP_001172387.1| succinate dehydrogenase (C subunit) [Pseudomonas stutzeri A1501]
gi|145570439|gb|ABP79545.1| succinate dehydrogenase (C subunit) [Pseudomonas stutzeri A1501]
Length = 124
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K+ RP++ L+ +L T + SI+HR++G ++++G +++ + +R Y
Sbjct: 1 MKSQRPVNLDLRTIKLPITAYTSILHRVSGVILFVGIALLLLALDTSLSSPEGFEEVRAY 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINI-IASILTVLI- 121
+ + ++ + A+++H++ G+R+LI D + +KI I ++++L VL
Sbjct: 61 LGSPLAKLVSWALLSALLYHLVAGVRHLIMDSGHGETLEGGKLGSKIVIAVSAVLIVLAG 120
Query: 122 VWI 124
VWI
Sbjct: 121 VWI 123
>gi|332141293|ref|YP_004427031.1| succinate dehydrogenase, cytochrome b subunit [Alteromonas
macleodii str. 'Deep ecotype']
gi|327551315|gb|AEA98033.1| succinate dehydrogenase, cytochrome b subunit [Alteromonas
macleodii str. 'Deep ecotype']
Length = 124
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ L + P+ SI+HR+TG ++ V++ + + ++++
Sbjct: 1 MKKQRPVNLELNTIKFPPSAISSILHRVTGVAMFFALLFVIWAWAVSVHSAEGFANVQAI 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
M+G + + A+ +H+LGG+R+++ D+ + + AK V+ +W
Sbjct: 61 MNGFLGKFVAIGTASALTYHILGGLRHVVMDLGHWEELESGNTSAK--------AVIALW 112
Query: 124 IIKDIV 129
++ +V
Sbjct: 113 VVLTVV 118
>gi|259909082|ref|YP_002649438.1| Succinate dehydrogenase cytochrome b-556 subunit [Erwinia
pyrifoliae Ep1/96]
gi|224964704|emb|CAX56221.1| Succinate dehydrogenase cytochrome b-556 subunit [Erwinia
pyrifoliae Ep1/96]
gi|283479108|emb|CAY75024.1| succinate dehydrogenase, cytochrome b556 [Erwinia pyrifoliae DSM
12163]
Length = 129
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ L R T SI+HR++G + ++ ++++ +
Sbjct: 3 KTVKKQRPVNLDLSTIRFPLTAIASILHRVSGVITFVSIGILLWLLGLSLSSPEGFLQAS 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD----KKIATQMA-KINIIASI 116
MD + + ++ A+ +H+ GGIR+++ D L + K++ Q+A I + SI
Sbjct: 63 AVMDSFIVKFIMWGILTALAYHIAGGIRHMMMDFGLLGETLETGKLSAQIAFGITVALSI 122
Query: 117 LTVLIVW 123
L ++VW
Sbjct: 123 LAGVLVW 129
>gi|170691142|ref|ZP_02882308.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
graminis C4D1M]
gi|170144391|gb|EDT12553.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
graminis C4D1M]
Length = 138
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 2 SSIKNNRP------LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
++K RP + L YRL VSI+HR++G ++++ P +++ F E
Sbjct: 3 DTLKKPRPEFRNIGIGQILTAYRLPLAGRVSILHRLSGGLLFVALPFLLYLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMA-KINII 113
+ + ++ + ++ + WA + H G+R+L+ D + + K+ Q + + ++
Sbjct: 63 SFEVFKGFLSNIIVKLITLVLAWAYLFHFCAGVRHLLMDTNHEAVTKEKGKQTSIVVFVV 122
Query: 114 ASILTV 119
+S+LT+
Sbjct: 123 SSLLTI 128
>gi|161504118|ref|YP_001571230.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. arizonae serovar
62:z4,z23:-- str. RSK2980]
gi|160865465|gb|ABX22088.1| hypothetical protein SARI_02216 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 134
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ +
Sbjct: 9 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFIAVGILLWLLGTSLSSPEGFQQAAD 68
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK-----INIIASIL 117
MDG + + ++ A+ +H++ GIR+++ D + A Q + I ++ S+L
Sbjct: 69 IMDGFLVKFIMWGILTALAYHVIVGIRHMLMDFGYLEETFEAGQRSAKISFVITVVLSLL 128
Query: 118 TVLIVW 123
++VW
Sbjct: 129 AGVLVW 134
>gi|292487649|ref|YP_003530522.1| succinate dehydrogenase, cytochrome b556 [Erwinia amylovora
CFBP1430]
gi|292898886|ref|YP_003538255.1| succinate dehydrogenase cytochrome b-556 subunit [Erwinia amylovora
ATCC 49946]
gi|291198734|emb|CBJ45843.1| succinate dehydrogenase cytochrome b-556 subunit [Erwinia amylovora
ATCC 49946]
gi|291553069|emb|CBA20114.1| succinate dehydrogenase, cytochrome b556 [Erwinia amylovora
CFBP1430]
gi|312171757|emb|CBX80015.1| succinate dehydrogenase, cytochrome b556 [Erwinia amylovora ATCC
BAA-2158]
Length = 129
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ L R T SI+HR++G + ++ ++++ +
Sbjct: 3 KTLKKQRPVNLDLSTIRFPLTAIASILHRVSGVITFVSIGILLWLLGLSLSSPEGFLQAS 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD----KKIATQMA-KINIIASI 116
MD + + ++ A+ +H+ GGIR+++ D L + K + Q+A I ++ SI
Sbjct: 63 AVMDSFIAKFIMWGILTALAYHIAGGIRHMMMDFGLLGETLETGKFSAQIAFGITVVLSI 122
Query: 117 LTVLIVW 123
L ++VW
Sbjct: 123 LAGVLVW 129
>gi|291614300|ref|YP_003524457.1| succinate dehydrogenase, cytochrome b556 subunit [Sideroxydans
lithotrophicus ES-1]
gi|291584412|gb|ADE12070.1| succinate dehydrogenase, cytochrome b556 subunit [Sideroxydans
lithotrophicus ES-1]
Length = 124
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
Query: 7 NRPLSPHLQIYRL---IPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
N+ HL ++++ +P +VSI+HR++G+V++L P+++ T ++L Y
Sbjct: 2 NKKRPKHLALHKIKLPLPG-YVSILHRVSGAVLFLSLPLLLMLLDQSLRSIETYTNLTEY 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ V ++ LF WA +HH G+RYL D+ L L A + + + ++A LT+ +++
Sbjct: 61 LSNPVLKLVLFGLMWAFLHHFCAGLRYLAIDLHL-LPSLAAARASSMWVMAVSLTLTVLF 119
Query: 124 IIK 126
++
Sbjct: 120 GVE 122
>gi|169153945|emb|CAQ14310.1| succinate dehydrogenase complex, subunit C, integral membrane
protein [Danio rerio]
Length = 169
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD- 65
NRP+SPH+ IY+ M +SI HR TG + L + + F + E S Y+D
Sbjct: 49 NRPMSPHMTIYKWSVPMAMSISHRGTG--IALSSGISAFALAALVLPE----SYPYYLDL 102
Query: 66 ------GSVF-EVCLFLYTWAVIHHMLGGIRYLIWDVS 96
G F F + V++H GIR+L WD
Sbjct: 103 IHSLTFGPQFLAFSKFALAFPVVYHTYNGIRHLAWDAG 140
>gi|169153946|emb|CAQ14311.1| succinate dehydrogenase complex, subunit C, integral membrane
protein [Danio rerio]
Length = 167
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD- 65
NRP+SPH+ IY+ M +SI HR TG + L + + F + E S Y+D
Sbjct: 47 NRPMSPHMTIYKWSVPMAMSISHRGTG--IALSSGISAFALAALVLPE----SYPYYLDL 100
Query: 66 ------GSVF-EVCLFLYTWAVIHHMLGGIRYLIWDVS 96
G F F + V++H GIR+L WD
Sbjct: 101 IHSLTFGPQFLAFSKFALAFPVVYHTYNGIRHLAWDAG 138
>gi|332306145|ref|YP_004433996.1| succinate dehydrogenase, cytochrome b556 subunit [Glaciecola
agarilytica 4H-3-7+YE-5]
gi|332173474|gb|AEE22728.1| succinate dehydrogenase, cytochrome b556 subunit [Glaciecola
agarilytica 4H-3-7+YE-5]
Length = 124
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ L P SI+HRITG ++ V++ + + + ++
Sbjct: 1 MKKQRPVNLQLNTISFPPAAITSILHRITGVAMFFALLFVIWAWAESVSSPDGFAFVQEQ 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKI 110
M G + ++ A+ +H+LGG+R+L+ D+ + + AKI
Sbjct: 61 MSGVIGKIIAIGTISALTYHILGGLRHLVMDMGHWEELESGNNSAKI 107
>gi|126668307|ref|ZP_01739266.1| succinate dehydrogenase (C subunit) [Marinobacter sp. ELB17]
gi|126627224|gb|EAZ97862.1| succinate dehydrogenase (C subunit) [Marinobacter sp. ELB17]
Length = 126
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L + VSI+HR++G +++ G +++ +GE +
Sbjct: 1 MNSKRPVNLDLGKFHFPLPAIVSILHRVSGIIIFAGVAFMLYGLDLSLSGEEGYGHVSEL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINI-IASILTVLI- 121
+ G ++ ++ A+++H++ GIR+L+ D+ + + + AK+ + IA IL VL
Sbjct: 61 LSGFFAKLIIWGILSALLYHLVAGIRHLLLDMGIGEELESGLVAAKVTLAIAIILIVLAG 120
Query: 122 VWI 124
VW+
Sbjct: 121 VWV 123
>gi|195389516|ref|XP_002053422.1| GJ23871 [Drosophila virilis]
gi|194151508|gb|EDW66942.1| GJ23871 [Drosophila virilis]
Length = 170
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIAN-------GEHTLSS 59
R +SPHL IY+ T +SI+HR TG + +G W + G +
Sbjct: 50 GRQMSPHLTIYKPQLTSMLSIMHRGTGLALGIG-----VWGLGLGALIASQDIGHYVTMV 104
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ G+ F+ + V +H GIR+LIWD L K
Sbjct: 105 EGLQLSGAALTAIKFIIAYPVGYHSANGIRHLIWDTGRFLKIK 147
>gi|45198725|ref|NP_985754.1| AFR207Cp [Ashbya gossypii ATCC 10895]
gi|44984735|gb|AAS53578.1| AFR207Cp [Ashbya gossypii ATCC 10895]
Length = 166
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 14/108 (12%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA------NGEHTLS 58
+ NRP+SPHL IY+ T ++S VHRI+G ++ V F A N E+ +
Sbjct: 40 RKNRPVSPHLTIYQPQLTWYLSSVHRISGVLLGGAFYAVTISFGVSALLGLGLNAENLAT 99
Query: 59 SLRCYM----DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+M D +V +L+ + H GIR+LIWD+ L K
Sbjct: 100 WYHSHMPTWGDLTVKGGAAYLFAF----HFGNGIRHLIWDMGRELSLK 143
>gi|119572984|gb|EAW52599.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa, isoform CRA_b [Homo sapiens]
Length = 189
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSS 59
+I +NRPLSPH+ IY M +SI HR TG + G V +F + N E L
Sbjct: 65 NIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAG--VSLFGMSALLLPGNFESYLEL 122
Query: 60 LRCYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
++ G ++ F + +++H GIR+L+WD+ L
Sbjct: 123 VKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLK 164
>gi|109130264|ref|XP_001093391.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like isoform 4 [Macaca mulatta]
Length = 169
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSS 59
+I +NRP+SPH+ IY M +SI HR TG + L V +F + N E L
Sbjct: 45 NISSNRPVSPHITIYSWSLPMAMSICHRGTG--IALSAGVSLFGMSALLLPGNFESYLEL 102
Query: 60 LRCYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
++ G ++ F + +++H GIR+L+WD+ L
Sbjct: 103 VKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLK 144
>gi|11466582|ref|NP_066472.1| succinate:cytochrome c oxidoreductase subunit 3 [Rhodomonas salina]
gi|10444169|gb|AAG17743.1|AF288090_19 succinate:cytochrome c oxidoreductase subunit 3 [Rhodomonas salina]
Length = 128
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI------ANGEHTLS 58
K RPL+PHL +Y+ T SI HRI+ ++++ +++F +C +
Sbjct: 3 KKIRPLAPHLLVYKPQLTSIFSIFHRISAGILFVVFTILLFLSYCFDYYLNFFSFYFIFY 62
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ + ++ V FL T+ + HM+ G+R++ WD L L+ K
Sbjct: 63 YFFPFFNLIIYFVSYFL-TFIFLFHMVNGLRHISWDFGLGLEIK 105
>gi|302191657|ref|NP_001180516.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa [Macaca mulatta]
gi|109086211|ref|XP_001093733.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like isoform 3 [Macaca mulatta]
Length = 169
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI---ANGEHTLSS 59
+I +NRP+SPH+ IY M +SI HR TG + L V +F + N E L
Sbjct: 45 NISSNRPVSPHITIYSWSLPMAMSICHRGTG--IALSAGVSLFGMSALLLPGNFESYLEL 102
Query: 60 LRCYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
++ G ++ F + +++H GIR+L+WD+ L
Sbjct: 103 VKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLK 144
>gi|16127759|ref|NP_422323.1| succinate dehydrogenase, cytochrome b556 subunit [Caulobacter
crescentus CB15]
gi|221236580|ref|YP_002519017.1| succinate dehydrogenase cytochrome B-556 subunit [Caulobacter
crescentus NA1000]
gi|13425261|gb|AAK25491.1| succinate dehydrogenase, cytochrome b556 subunit [Caulobacter
crescentus CB15]
gi|220965753|gb|ACL97109.1| succinate dehydrogenase cytochrome B-556 subunit [Caulobacter
crescentus NA1000]
Length = 135
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RP+SPHLQ++R TM SI+HR +++G ++ W +A G +S +
Sbjct: 10 ERPMSPHLQVWRWHITMACSILHRGCVVGLWVGAVILAGWAAALAAGPDAYASYVGLLGS 69
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
+ ++ L T+AV ++ IR WD + A + I +++ ++ W+I
Sbjct: 70 PIGKLVLLGETFAVFFNVAYTIRQTFWDAGKGFAPRTADMTGAMAIAFAVVATIVTWVIA 129
Query: 127 D 127
Sbjct: 130 G 130
>gi|894229|gb|AAB33776.1| succinate-ubiquinone reductase QPs1 subunit [cattle, heart, Peptide
Mitochondrial, 140 aa]
Length = 140
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-EHTLSSLRCYMD 65
NRPLSPH+ IY M +SI HR TG + G + + E L ++
Sbjct: 20 NRPLSPHISIYGWSLPMAMSICHRGTGIALSAGVSLFGLSALLVPGSFESHLEFVKSLCL 79
Query: 66 G-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
G ++ F + +++H GIR+L+WD+ L +Q+ + + +LTVL
Sbjct: 80 GPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLT---ISQLHQSGVAVLVLTVL 132
>gi|162939|gb|AAA21608.1| cytochrome b-560 [Bos taurus]
Length = 132
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-EHTLSSLRCYMD 65
NRPLSPH+ IY M +SI HR TG + G + + E L ++
Sbjct: 12 NRPLSPHISIYGWSLPMAMSICHRGTGIALSAGVSLFGLSALLVPGSFESHLEFVKSLCL 71
Query: 66 G-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
G ++ F + +++H GIR+L+WD+ L +Q+ + + +LTVL
Sbjct: 72 GPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLT---ISQLHQSGVAVLVLTVL 124
>gi|330862922|emb|CBX73057.1| succinate dehydrogenase cytochrome b556 subunit [Yersinia
enterocolitica W22703]
Length = 143
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ LQ R T SI+HR++G + ++ +++ W + ++SS
Sbjct: 17 KTVKKQRPVNLDLQTIRFPVTAIASILHRVSGVMTFVAVGILL-WLLGL-----SVSSQE 70
Query: 62 CYMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDV-----SLCLDKKIATQMAKI 110
+M + F+ W ++ +H+ GGIR+L+ D SL + A + +
Sbjct: 71 GFMQAAAVMNSFFVKFIFWGILTALAYHVCGGIRHLLMDFGYVEESLAAGTRSAQVVMVL 130
Query: 111 NIIASILTVLIVW 123
++ S+L ++VW
Sbjct: 131 TLVLSVLAGVLVW 143
>gi|255065302|ref|ZP_05317157.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria sicca
ATCC 29256]
gi|255050723|gb|EET46187.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria sicca
ATCC 29256]
Length = 98
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 25 VSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHM 84
VSI+HRI+G +++ PV+++ + E + R + + ++ L WA +HH
Sbjct: 23 VSILHRISGVGLFIMLPVLLYLLSGTLSRESAFETYRAIVSNPLVKLILIGVLWAYLHHF 82
Query: 85 LGGIRYLIW 93
L GIR+ W
Sbjct: 83 LAGIRFYFW 91
>gi|326561803|gb|EGE12138.1| succinate dehydrogenase, cytochrome b556 subunit [Moraxella
catarrhalis 7169]
gi|326563240|gb|EGE13507.1| succinate dehydrogenase, cytochrome b556 subunit [Moraxella
catarrhalis 46P47B1]
gi|326563354|gb|EGE13619.1| succinate dehydrogenase, cytochrome b556 subunit [Moraxella
catarrhalis 12P80B1]
gi|326565892|gb|EGE16053.1| succinate dehydrogenase, cytochrome b556 subunit [Moraxella
catarrhalis 103P14B1]
gi|326568971|gb|EGE19040.1| succinate dehydrogenase, cytochrome b556 subunit [Moraxella
catarrhalis BC1]
gi|326571947|gb|EGE21952.1| succinate dehydrogenase, cytochrome b556 subunit [Moraxella
catarrhalis BC8]
gi|326575458|gb|EGE25383.1| succinate dehydrogenase, cytochrome b556 subunit [Moraxella
catarrhalis 101P30B1]
gi|326576453|gb|EGE26361.1| succinate dehydrogenase, cytochrome b556 subunit [Moraxella
catarrhalis CO72]
gi|326577924|gb|EGE27788.1| succinate dehydrogenase, cytochrome b556 subunit [Moraxella
catarrhalis O35E]
Length = 129
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 19/136 (13%)
Query: 1 MSSIKNNRP----LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP LS + + P SI+HR++G V++L PV++ CI + +
Sbjct: 1 MPAVKSNRPINLPLSQVIAVNSKSPIAMASILHRVSGIVLFLLVPVML----CIL--QTS 54
Query: 57 LSSLRCYMDGSVF-EVCLFLYTW----AVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN 111
LSS + +VF + L W A +H + GI++L+ D + + K A I+
Sbjct: 55 LSSADSF--AAVFNNIALRFVAWIFVAATAYHFVMGIKHLLADAGMNEELKSGRTAAVIS 112
Query: 112 -IIASILTVL-IVWII 125
+IA++L V VW++
Sbjct: 113 FVIAAVLIVASFVWVM 128
>gi|123443162|ref|YP_001007136.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia enterocolitica subsp. enterocolitica 8081]
gi|122090123|emb|CAL12986.1| succinate dehydrogenase cytochrome b-556 subunit [Yersinia
enterocolitica subsp. enterocolitica 8081]
Length = 129
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ LQ R T SI+HR++G + ++ +++ W + ++SS
Sbjct: 3 KTVKKQRPVNLDLQTIRFPVTAIASILHRVSGVMTFVAVGILL-WLLGL-----SVSSQE 56
Query: 62 CYMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDV-----SLCLDKKIATQMAKI 110
+M + F+ W ++ +H+ GGIR+L+ D SL + A + +
Sbjct: 57 GFMQAAAVMNSFFVKFIFWGILTALAYHVCGGIRHLLMDFGYVEESLAAGTRSAQVVMVL 116
Query: 111 NIIASILTVLIVW 123
++ S+L ++VW
Sbjct: 117 TLVLSVLAGVLVW 129
>gi|109898115|ref|YP_661370.1| succinate dehydrogenase, cytochrome b subunit [Pseudoalteromonas
atlantica T6c]
gi|109700396|gb|ABG40316.1| succinate dehydrogenase subunit C [Pseudoalteromonas atlantica T6c]
Length = 124
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ L P SI+HRITG ++ V++ + + + ++
Sbjct: 1 MKKQRPVNLQLNTISFPPAAITSILHRITGVAMFFALLFVIWAWAESVSSPDGFAFVQEQ 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKI 110
M G + ++ A+ +H+LGG+R+L+ D+ + + AKI
Sbjct: 61 MSGVIGKIIAIATISALTYHILGGLRHLVMDMGYWEELESGNISAKI 107
>gi|159462554|ref|XP_001689507.1| succinate dehydrogenase subunit b560 [Chlamydomonas reinhardtii]
gi|158283495|gb|EDP09245.1| succinate dehydrogenase subunit b560 [Chlamydomonas reinhardtii]
Length = 203
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 35/125 (28%)
Query: 6 NNRPLSPH-LQI------YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLS 58
RPLSP ++I Y+ SI +R+TG + +G F A +
Sbjct: 71 KKRPLSPDVMEIDNKSAHYKFPLGALSSITNRVTGVALSVG--------FAGAG----VF 118
Query: 59 SLRCYMDGSVFEVCL----------FLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+LR +DG V C FL ++A+I+H LGG+R+++WDVS KI Q
Sbjct: 119 ALRGSLDG-VVAACAGSFLIGFPLKFLVSYAIIYHWLGGLRHIVWDVS-----KIGNQAD 172
Query: 109 KINII 113
+ +++
Sbjct: 173 RTSLL 177
>gi|293610901|ref|ZP_06693200.1| succinate dehydrogenase [Acinetobacter sp. SH024]
gi|292826553|gb|EFF84919.1| succinate dehydrogenase [Acinetobacter sp. SH024]
Length = 133
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 70/138 (50%), Gaps = 19/138 (13%)
Query: 1 MSSIKNNRP----LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP + L + P SI+HR++G +V+L PV++ W + +
Sbjct: 1 MPAVKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLVPVLL-WIL-----DKS 54
Query: 57 LSSLRC--YMDGSVF-----EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
LSS Y+ VF ++++ +I H + GI++L+ D+ + + A
Sbjct: 55 LSSPEGFDYVKNVVFGNILVRFVVWVFAAGLIFHFIAGIKHLLADLGFAEELQSGRIAAT 114
Query: 110 INIIASILTVL--IVWII 125
I++I S++ ++ VWI+
Sbjct: 115 ISLILSVVAIIAAFVWIM 132
>gi|308497614|ref|XP_003110994.1| CRE-MEV-1 protein [Caenorhabditis remanei]
gi|308242874|gb|EFO86826.1| CRE-MEV-1 protein [Caenorhabditis remanei]
Length = 184
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M NRP++PHL IY+ T +S HRI+G V+ GT +V F + + T +
Sbjct: 45 MKQRAKNRPIAPHLTIYQPQLTWMLSGFHRISGCVM-AGTLLVGGIGFAVLPFDFT--TF 101
Query: 61 RCYMDG-----SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK 101
Y+ G +V V ++ + +I H L GIR+L +D++ +D
Sbjct: 102 VEYIRGWNLPCAVTAVFKYIIAFPIIFHTLNGIRFLGFDLAKGVDN 147
>gi|321465564|gb|EFX76564.1| hypothetical protein DAPPUDRAFT_36257 [Daphnia pulex]
Length = 126
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTP--VVVFWFFCIANGEHTLSSLRCYM 64
RPLS HL I++L M +S+ HR TG V+ G P + + + L L C M
Sbjct: 9 KRPLSAHLSIHKLQNNMIISMTHRFTG-VILCGIPFGLATVAILLPESYPYYLEILEC-M 66
Query: 65 DGSVFEVCL--FLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ S F + FL H L GIR+LIWD+ L K
Sbjct: 67 NLSRFMITTGKFLVVLPFSFHYLNGIRHLIWDLGYWLTIK 106
>gi|95769404|gb|ABF57433.1| succinate dehydrogenase complex, subunit C isoform 1 precursor [Bos
taurus]
Length = 168
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-EHTLSSLRCYMD 65
NRPLSPH+ IY M +SI HR TG + G + + E L ++
Sbjct: 48 NRPLSPHISIYGWSLPMAMSICHRGTGIALSAGVSLFGLSALLVPGSFESHLEFVKSLCL 107
Query: 66 G-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
G ++ F + +++H GIR+L+WD+ L +Q+ + + +LTVL
Sbjct: 108 GPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLT---ISQLHQSGVAVLVLTVL 160
>gi|254524825|ref|ZP_05136880.1| succinate dehydrogenase, cytochrome b556 subunit [Stenotrophomonas
sp. SKA14]
gi|219722416|gb|EED40941.1| succinate dehydrogenase, cytochrome b556 subunit [Stenotrophomonas
sp. SKA14]
Length = 117
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 52/108 (48%)
Query: 16 IYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFL 75
+YR M SI+HR TG + +G ++ + G + + + V LF
Sbjct: 1 MYRWQIQMATSILHRATGVFLSVGALIIAAGLLALMMGPESWNCFTGHAGAWYGRVFLFA 60
Query: 76 YTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+TW+ +H+ GIR+++ D ++ + + +++ S++ L+VW
Sbjct: 61 WTWSFAYHLCNGIRHVVQDFAIGFSIPAFIRSSWLSVTGSLVITLLVW 108
>gi|169632620|ref|YP_001706356.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii SDF]
gi|169151412|emb|CAP00143.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii]
Length = 133
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 70/138 (50%), Gaps = 19/138 (13%)
Query: 1 MSSIKNNRP----LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP + L + P SI+HR++G +V+L PV++ W + +
Sbjct: 1 MPAVKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLVPVLL-WIL-----DKS 54
Query: 57 LSSLRC--YMDGSVF-----EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
LSS Y+ VF ++++ +I H + G+++L+ D+ + + A
Sbjct: 55 LSSPEGFDYVKNVVFGNILVRFVVWVFVAGLIFHFIAGVKHLLADLGFAEELQSGRIAAT 114
Query: 110 INIIASILTVL--IVWII 125
I++I S++ ++ VWI+
Sbjct: 115 ISLILSVVAIIAAFVWIV 132
>gi|121712948|ref|XP_001274085.1| succinate dehydrogenase cytochrome b560 subunit [Aspergillus
clavatus NRRL 1]
gi|119402238|gb|EAW12659.1| succinate dehydrogenase cytochrome b560 subunit [Aspergillus
clavatus NRRL 1]
Length = 188
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFCIANGEHT 56
NRP++PHL IYR T S +HRITG + YL P + W A+
Sbjct: 65 NRPVAPHLSIYRPQITWIGSSLHRITGVALSGSLYLFATAYLAAP-LFGWHLESASLVAA 123
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+L + F + ++H L G+R+L+WD+ + +
Sbjct: 124 FGALPLAAKVLLKSTAAFPF----VYHCLNGVRHLVWDLGRGMTNQ 165
>gi|83950428|ref|ZP_00959161.1| succinate dehydrogenase, cytochrome b556 subunit [Roseovarius
nubinhibens ISM]
gi|83838327|gb|EAP77623.1| succinate dehydrogenase, cytochrome b556 subunit [Roseovarius
nubinhibens ISM]
Length = 103
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 26 SIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHML 85
SI+ RITG+ + LG ++V+WF A G +++ + + ++ + WA+ +H+L
Sbjct: 3 SILTRITGNALLLGALLMVWWFLAAATGPEYFATVDGIVTSFLGDLIMVGSLWALWYHLL 62
Query: 86 GGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
G+R+LIWD +L L+ + A +M ++IA
Sbjct: 63 AGVRHLIWDNALMLELERA-EMLGWSVIAG 91
>gi|28461247|ref|NP_787008.1| succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Bos taurus]
gi|1705529|sp|P35720|C560_BOVIN RecName: Full=Succinate dehydrogenase cytochrome b560 subunit,
mitochondrial; AltName: Full=Integral membrane protein
CII-3; AltName: Full=QPs-1; Short=QPs1; AltName:
Full=Succinate dehydrogenase complex subunit C; Flags:
Precursor
gi|786511|gb|AAB32390.1| succinate-ubiquinone oxidoreductase complex II membrane-intrinsic
subunit [Bos taurus]
gi|74267618|gb|AAI02063.1| Succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa [Bos taurus]
gi|296489839|gb|DAA31952.1| succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Bos taurus]
gi|1092498|prf||2024211A succinate ubiquinone oxidoreductase
Length = 169
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-EHTLSSLRCYMD 65
NRPLSPH+ IY M +SI HR TG + G + + E L ++
Sbjct: 49 NRPLSPHISIYGWSLPMAMSICHRGTGIALSAGVSLFGLSALLVPGSFESHLEFVKSLCL 108
Query: 66 G-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
G ++ F + +++H GIR+L+WD+ L +Q+ + + +LTVL
Sbjct: 109 GPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLT---ISQLHQSGVAVLVLTVL 161
>gi|209694421|ref|YP_002262349.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Aliivibrio salmonicida LFI1238]
gi|208008372|emb|CAQ78527.1| succinate dehydrogenase cytochrome b556 subunit [Aliivibrio
salmonicida LFI1238]
Length = 133
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+K +RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 9 KVKKSRPVNLDLQTIRFPITAIASILHRVSGVITFVSVGILLWLLNLSLSSPIGFAQAAD 68
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN-IIASILTVL- 120
++DG ++ A+ +H++ GIR+L+ D+ + + A+Q AKI +I ++L++L
Sbjct: 69 HIDGFFVTFIMWGILTALAYHIVVGIRHLLMDMGHFEELESASQSAKIAFVITAVLSLLA 128
Query: 121 --IVW 123
+VW
Sbjct: 129 GVLVW 133
>gi|159462552|ref|XP_001689506.1| succinate dehydrogenase subunit b560 [Chlamydomonas reinhardtii]
gi|158283494|gb|EDP09244.1| succinate dehydrogenase subunit b560 [Chlamydomonas reinhardtii]
Length = 183
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 35/125 (28%)
Query: 6 NNRPLSPH-LQI------YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLS 58
RPLSP ++I Y+ SI +R+TG + +G F A +
Sbjct: 51 KKRPLSPDVMEIDNKSAHYKFPLGALSSITNRVTGVALSVG--------FAGAG----VF 98
Query: 59 SLRCYMDGSVFEVCL----------FLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+LR +DG V C FL ++A+I+H LGG+R+++WDVS KI Q
Sbjct: 99 ALRGSLDG-VVAACAGSFLIGFPLKFLVSYAIIYHWLGGLRHIVWDVS-----KIGNQAD 152
Query: 109 KINII 113
+ +++
Sbjct: 153 RTSLL 157
>gi|118594808|ref|ZP_01552155.1| succinate dehydrogenase cytochrome b-556 subunit [Methylophilales
bacterium HTCC2181]
gi|118440586|gb|EAV47213.1| succinate dehydrogenase cytochrome b-556 subunit [Methylophilales
bacterium HTCC2181]
Length = 123
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 18 RLIPTMFVSIVHRITGSVVYLGTPVVVFWF----FCIANGEHTLSSLRCYMDGSVFEVCL 73
RL VSI+HR++G+V+++ P +V F ++ E T+S L + + L
Sbjct: 15 RLPMPALVSILHRMSGAVLFIFMPFLVVAFCNSLTSVSFYERTISQLFSF----PLVLIL 70
Query: 74 FLYTWAVIHHMLGGIRYLIWDVSLCLDKKIA 104
+L W IHH++ G R+L+ D+ + D +A
Sbjct: 71 YLMVWGFIHHLIAGFRHLLLDMQIGNDLIVA 101
>gi|328775159|gb|AEB39974.1| succinate dehydrogenase subunit 3 [Funaria hygrometrica]
Length = 131
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 21/110 (19%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVF---WFFCIANGEHT---- 56
+K NRPLSPHL IY+ T +SI HRI+G+ + ++VF F I + T
Sbjct: 1 MKINRPLSPHLTIYKPQLTSTLSIFHRISGAFL----AIMVFSSILFLKIGDLNLTSYYF 56
Query: 57 ------LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
+S ++ S+ L A+ +HM GIR+L+WD+ L+
Sbjct: 57 YRYAFFFTSYSYWLILSLVNFSLL----ALCYHMSNGIRHLLWDLGFFLE 102
>gi|57768830|ref|NP_001003523.1| succinate dehydrogenase complex, subunit C, integral membrane
protein [Danio rerio]
gi|50417100|gb|AAH78306.1| Succinate dehydrogenase complex, subunit C, integral membrane
protein [Danio rerio]
Length = 144
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD- 65
NRP+SPH+ IY+ M +SI HR TG + L + + F + E S Y+D
Sbjct: 24 NRPMSPHMTIYKWSVPMAMSISHRGTG--IALSSGISAFALAALVLPE----SYPYYLDL 77
Query: 66 ------GSVF-EVCLFLYTWAVIHHMLGGIRYLIWDVS 96
G F F + V++H GIR+L WD
Sbjct: 78 IHSLTFGPQFLAFSKFALAFPVVYHTYNGIRHLAWDAG 115
>gi|326569270|gb|EGE19331.1| succinate dehydrogenase, cytochrome b556 subunit [Moraxella
catarrhalis BC7]
Length = 129
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 19/136 (13%)
Query: 1 MSSIKNNRP----LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP LS + + P SI+HR++G V++L PV++ CI + +
Sbjct: 1 MPAVKSNRPINLPLSQVIAVNSKSPIAMASILHRMSGIVLFLLVPVML----CIL--QTS 54
Query: 57 LSSLRCYMDGSVF-EVCLFLYTW----AVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN 111
LSS + +VF + L W A +H + GI++L+ D + + K A I+
Sbjct: 55 LSSADSF--AAVFNNIALRFVAWIFVAATAYHFVMGIKHLLADAGMNEELKSGRTAAVIS 112
Query: 112 -IIASILTVL-IVWII 125
+IA++L V VW++
Sbjct: 113 FVIAAVLIVASFVWVM 128
>gi|153948100|ref|YP_001401848.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia pseudotuberculosis IP 31758]
gi|152959595|gb|ABS47056.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia
pseudotuberculosis IP 31758]
Length = 125
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 64/131 (48%), Gaps = 17/131 (12%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ R T SI+HR++G + ++ +++ W + ++SS +
Sbjct: 1 MKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILL-WLLGL-----SVSSQEGF 54
Query: 64 MDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDV-----SLCLDKKIATQMAKINI 112
M + F+ W ++ +H+ GGIR+L+ D +L + + A + +
Sbjct: 55 MQAATIMNSFFVKFIFWGILTALAYHICGGIRHLLMDFGYLEENLAVGTRSAQVAMGLTL 114
Query: 113 IASILTVLIVW 123
+ S+L ++VW
Sbjct: 115 VLSVLAGVLVW 125
>gi|317491182|ref|ZP_07949618.1| succinate dehydrogenase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920729|gb|EFV42052.1| succinate dehydrogenase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 129
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ ++K RP++ LQ R T SI+HR +G + ++ ++++ +
Sbjct: 2 IKNVKKQRPVNLDLQTIRFPVTAIASILHRASGVITFVSIGILLWLLGLSLASPEGFAQA 61
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV-----SLCLDKKIATQMAKINIIAS 115
MD + + ++ A+ +H+ GGIR+++ D S + A I ++ S
Sbjct: 62 AAVMDSFIVKFIVWGILTALAYHICGGIRHMLMDFGYIEESFAAGSRTAYISFAITVVLS 121
Query: 116 ILTVLIVW 123
IL ++VW
Sbjct: 122 ILAGVLVW 129
>gi|296412597|ref|XP_002836009.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629809|emb|CAZ80166.1| unnamed protein product [Tuber melanosporum]
Length = 181
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 15/108 (13%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLG----------TPVVVFWFFCIANGE 54
+ RP+SPHL IY+ T S +RITGS++ +G PV + F +
Sbjct: 56 RKQRPISPHLGIYQPQLTWCGSAANRITGSILSVGAYGFFAAYAVAPVFGWPFDSV---- 111
Query: 55 HTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
T+++ + + F T +H GIR+L+WD LD K
Sbjct: 112 -TIAAAFSGLPAATKFGIKFAVTLPFSYHSWNGIRHLLWDTGKALDIK 158
>gi|261856937|ref|YP_003264220.1| succinate dehydrogenase, cytochrome b556 subunit [Halothiobacillus
neapolitanus c2]
gi|261837406|gb|ACX97173.1| succinate dehydrogenase, cytochrome b556 subunit [Halothiobacillus
neapolitanus c2]
Length = 124
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 65/122 (53%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ +RP+S +L +L VSI+HRI+G+ ++L PV+++ F + ++ +
Sbjct: 1 MAGSRPVSLNLLKIKLPLPGIVSIMHRISGAFLFLLLPVLLYVFQLSLGSAEGFAEVQSW 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
V ++ L + WA +HH G+RYL D+ + + A AK+ ++ SI L++
Sbjct: 61 FHSPVAKLALLVVVWAYLHHFCMGLRYLALDLDIGVHLAQARFTAKLVLVVSIALTLLIG 120
Query: 124 II 125
++
Sbjct: 121 VL 122
>gi|119186307|ref|XP_001243760.1| hypothetical protein CIMG_03201 [Coccidioides immitis RS]
Length = 205
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITG----SVVYL-GTPVVVFWFFCIANGEH 55
+++ + NRP+SPHL IY+ T VS + R+TG +YL GT VV +
Sbjct: 75 LAAQRLNRPVSPHLSIYKFQITSVVSSLERLTGMMLSGGLYLFGTAYVVSPYLGWDLSSA 134
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+L++ + + F W + H L G +Y++W L+ K Q
Sbjct: 135 SLAAAFGALPFAAKAAAKFSIAWPFLFHCLNGTKYMVWSWGKLLNNKAVIQAG 187
>gi|11465650|ref|NP_049321.1| succinate:cytochrome c oxidoreductase subunit 3 [Porphyra
purpurea]
gi|1705530|sp|P80478|C560_PORPU RecName: Full=Succinate dehydrogenase cytochrome b560 subunit;
AltName: Full=Succinate dehydrogenase, subunit III
gi|4106957|gb|AAD03124.1| succinate:cytochrome c oxidoreductase subunit 3 [Porphyra
purpurea]
Length = 125
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVY--LGTPVVVFWFFCIANGEH-TLSSLRCY 63
NRP+SPHL IY + SI HRI+G ++ + +P + F +A + + + L
Sbjct: 5 NRPISPHLTIYNTQKSSLFSIWHRISGVAMFTLIASPPL---FLKLATFSYKSFNILDLM 61
Query: 64 MDGSVFEVCLFLYTWAVI--HHMLGGIRYLIWD 94
++ S + F+ +VI +H++ GIR+ +WD
Sbjct: 62 LNNSSLILPWFIVIISVIFLYHIINGIRHFLWD 94
>gi|254786526|ref|YP_003073955.1| succinate dehydrogenase, cytochrome b556 subunit [Teredinibacter
turnerae T7901]
gi|237685297|gb|ACR12561.1| succinate dehydrogenase, cytochrome b556 subunit [Teredinibacter
turnerae T7901]
Length = 124
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K NRP++ + +L T +VSI+HR++G V+ G V+++ E + L+
Sbjct: 1 MKTNRPVNLDISTIKLPVTAYVSILHRVSGVVLLAGVLVLLYMLDMSLTSEESFDELKEL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
+ + ++ L+ A+ +H + G+R+LI D + + + AK+ ++ +I+ ++
Sbjct: 61 LASPLAKIVLWGVLSALAYHFVAGVRHLIMDAGVGESLEGGKRGAKVALVLAIVLIIAAG 120
Query: 122 VWI 124
VW+
Sbjct: 121 VWV 123
>gi|126642742|ref|YP_001085726.1| succinate dehydrogenase cytochrome b556 subunit [Acinetobacter
baumannii ATCC 17978]
gi|169794942|ref|YP_001712735.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii AYE]
gi|260557308|ref|ZP_05829524.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii ATCC 19606]
gi|301346639|ref|ZP_07227380.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii AB056]
gi|332854231|ref|ZP_08435251.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii 6013150]
gi|332866326|ref|ZP_08436931.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii 6013113]
gi|332872541|ref|ZP_08440510.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii 6014059]
gi|126388626|gb|ABO13124.1| succinate dehydrogenase cytochrome b556 subunit [Acinetobacter
baumannii ATCC 17978]
gi|169147869|emb|CAM85732.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii AYE]
gi|260409414|gb|EEX02716.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii ATCC 19606]
gi|332728156|gb|EGJ59544.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii 6013150]
gi|332734674|gb|EGJ65778.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii 6013113]
gi|332739227|gb|EGJ70085.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii 6014059]
Length = 133
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 70/138 (50%), Gaps = 19/138 (13%)
Query: 1 MSSIKNNRP----LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP + L + P SI+HR++G +V+L PV++ W + +
Sbjct: 1 MPAVKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLVPVLL-WIL-----DKS 54
Query: 57 LSSLRC--YMDGSVF-----EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
LSS Y+ VF ++++ +I H + G+++L+ D+ + + A
Sbjct: 55 LSSPEGFDYVKNVVFGNILVRFVVWVFVAGLIFHFIAGVKHLLADLGFAEELQSGRIAAT 114
Query: 110 INIIASILTVL--IVWII 125
I++I S++ ++ VWI+
Sbjct: 115 ISLILSVVAIIAAFVWIM 132
>gi|170050185|ref|XP_001859594.1| mitochondrial succinate dehydrogenase cytochrome b subunit [Culex
quinquefasciatus]
gi|167871715|gb|EDS35098.1| mitochondrial succinate dehydrogenase cytochrome b subunit [Culex
quinquefasciatus]
Length = 171
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG-SVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RP SPHL IY T +SI HR+TG ++ T + + + H L+ L +
Sbjct: 53 QRPQSPHLTIYSFQLTAVLSITHRMTGMALAGYATALGLGALAMPHDATHYLTMLEG-LS 111
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASILTVLIVWI 124
F + +H + G+R+L WD+ L K++ T + +++ +L + ++
Sbjct: 112 APTLMALKFTMAYPFSYHTVNGVRHLFWDLGKFLSIKEVYTTGYTMLLVSGVLAAGLTFL 171
>gi|332020713|gb|EGI61118.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
[Acromyrmex echinatior]
Length = 154
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 22/112 (19%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL---SS 59
+++ RPLSPHL IY++ T +SI HR TG ++ + + G TL
Sbjct: 30 NMRLKRPLSPHLTIYQVQLTTLLSITHRTTG---------IILSSYAMFLGLGTLLIPGG 80
Query: 60 LRCYMDGSVFEVCL---------FLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ C+++ ++ +CL L H GIR+L+WD+ + L K
Sbjct: 81 IPCFIE-TMDNLCLPLPILFVGKTLLALPATFHTYNGIRHLLWDLGMFLTIK 131
>gi|331215943|ref|XP_003320651.1| hypothetical protein PGTG_02673 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309299641|gb|EFP76232.1| hypothetical protein PGTG_02673 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 189
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 18/108 (16%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RP SPH IY+ T + SI +R+TG + G F+ A G L +
Sbjct: 68 RPSSPHFTIYQPQLTWYSSIANRVTGCALSAG-------FYAYALGYMALPGSIPLDSDT 120
Query: 68 VFEVCLFLYTWAVI-----------HHMLGGIRYLIWDVSLCLDKKIA 104
V +V WA + +H G+R+L WD+ LD K +
Sbjct: 121 VVQVVASSPEWAKVAGKAIVALPFTYHTFNGVRHLAWDMGYLLDLKTS 168
>gi|157369506|ref|YP_001477495.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Serratia proteamaculans 568]
gi|270263768|ref|ZP_06192037.1| succinate dehydrogenase, cytochrome b556 subunit [Serratia
odorifera 4Rx13]
gi|157321270|gb|ABV40367.1| Succinate dehydrogenase cytochrome b556 subunit [Serratia
proteamaculans 568]
gi|270042652|gb|EFA15747.1| succinate dehydrogenase, cytochrome b556 subunit [Serratia
odorifera 4Rx13]
Length = 129
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 60/127 (47%), Gaps = 5/127 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ LQ + T SI+HR++G + ++ ++++ + +
Sbjct: 3 KNVKKQRPVNLDLQTIQFPVTAIASILHRVSGVITFVAVGILLWLLGLSLSSQEGFMQAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV-----SLCLDKKIATQMAKINIIASI 116
M+ V + + A+ +H+ GGIR+L+ D SL + A + ++ S+
Sbjct: 63 AIMNSFVVKFIFWGILTALAYHICGGIRHLLMDFGYIEESLAAGTRSAQVAIGLTVVLSV 122
Query: 117 LTVLIVW 123
L ++VW
Sbjct: 123 LAGVLVW 129
>gi|114332434|ref|YP_748656.1| succinate dehydrogenase, cytochrome b subunit [Nitrosomonas
eutropha C91]
gi|114309448|gb|ABI60691.1| succinate dehydrogenase subunit C [Nitrosomonas eutropha C91]
Length = 130
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 25 VSIVHRITGSVVYL-GTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHH 83
VSI+HRI+G +++ G P+ + + + + L+ + + + L TW +HH
Sbjct: 27 VSILHRISGVLLFFPGIPLFLCGLQMMLESPESFARLQSILIHPLSRLFLLFATWFFLHH 86
Query: 84 MLGGIRYLIWDVSLCLDKKIATQMAKINII-ASILTVLI-VWI 124
+ GIR+L D+ L + A +K+ +I +ILTVL +W+
Sbjct: 87 LFAGIRHLGLDMHYGLQLQHARLSSKLVLIFGAILTVLAGIWL 129
>gi|224061007|ref|XP_002300314.1| predicted protein [Populus trichocarpa]
gi|222847572|gb|EEE85119.1| predicted protein [Populus trichocarpa]
Length = 282
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG 53
RPLSPHL IYR SIV+RI+G+ +L T V+ F+F C+ G
Sbjct: 194 RPLSPHLPIYRPQVNSTFSIVNRISGA--FLSTIVLCFYFICLKTG 237
>gi|311694408|gb|ADP97281.1| succinate dehydrogenase, cytochrome b560 subunit [marine bacterium
HP15]
Length = 125
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 64/123 (52%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L + SI+HRI+G ++++ +++ +GE S +
Sbjct: 1 MNSKRPVNLDLGKFHFPLPAITSILHRISGIILFVAVAFMLYGLQLSLSGEEGFSRVSEL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
+D + ++ + A+++H++ GI++L D+ + + + +KI + S++ +L+
Sbjct: 61 LDSFLAKLITWGILSALLYHLVAGIKHLFMDMGIGEELESGRLASKITVAVSVILILLAG 120
Query: 122 VWI 124
VW+
Sbjct: 121 VWV 123
>gi|312884960|ref|ZP_07744650.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio caribbenthicus ATCC BAA-2122]
gi|309367437|gb|EFP94999.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio caribbenthicus ATCC BAA-2122]
Length = 130
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HRI+G + ++ ++++ + + +
Sbjct: 8 RKSRPVNLDLQTIRFPITAIASILHRISGVITFVAIGILLWLLSISLSSPVGYAQAASLV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA----SILTVL 120
DG + ++ A+ +H++GGIR+L+ D+ + + AK++ +A S+L +
Sbjct: 68 DGFFVKFIIWGILTALAYHIVGGIRHLLMDMGHFEELESGAMSAKVSFVATIVLSVLAGV 127
Query: 121 IVW 123
+VW
Sbjct: 128 MVW 130
>gi|48727574|gb|AAT46090.1| integral membrane protein CII-3 [Branchiostoma belcheri
tsingtauense]
Length = 165
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSV----VY---LG----TPVVVFWFFCIA 51
+ + RP+SPHL IY+ T +S+ HR TG+ VY +G P++ + F I
Sbjct: 52 NAQKKRPMSPHLTIYKPQLTAMLSMTHRGTGAAMAGCVYAFSMGMLVVNPLLGWDFPTII 111
Query: 52 NGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKI 103
+ +L + G + C+ W + +H + GIR+L WD D K+
Sbjct: 112 SFVKSLELHPWLILGGKW--CM---AWPISYHAMNGIRHLTWDTGYGFDMKV 158
>gi|195038233|ref|XP_001990564.1| GH19420 [Drosophila grimshawi]
gi|193894760|gb|EDV93626.1| GH19420 [Drosophila grimshawi]
Length = 171
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT-PVVVFWFFCIANGEHTLSSLRC-YM 64
R +SPHL IY+ T +SI+HR TG + +G + + + H ++ + +
Sbjct: 51 GREMSPHLTIYKPQLTSMLSIMHRGTGLALGMGVWGLGLGALIASQDISHYVTMVEGLQL 110
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
G+ F+ + V +H GIR+L+WD L K
Sbjct: 111 SGATLTAIKFIIAYPVGYHSANGIRHLLWDTGRFLKIK 148
>gi|260549001|ref|ZP_05823223.1| succinate dehydrogenase cytochrome b556 subunit [Acinetobacter sp.
RUH2624]
gi|260408169|gb|EEX01640.1| succinate dehydrogenase cytochrome b556 subunit [Acinetobacter sp.
RUH2624]
Length = 133
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 70/138 (50%), Gaps = 19/138 (13%)
Query: 1 MSSIKNNRP----LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP + L + P SI+HR++G +V+L PV++ W + +
Sbjct: 1 MPAVKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLVPVLL-WIL-----DKS 54
Query: 57 LSSLRC--YMDGSVF-----EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
LSS Y+ VF ++++ +I H + G+++L+ D+ + + A
Sbjct: 55 LSSPEGFDYVKNVVFGNILVRFIVWVFVAGLIFHFIAGVKHLLADLGFAEELQSGRIAAT 114
Query: 110 INIIASILTVL--IVWII 125
I++I S++ ++ VWI+
Sbjct: 115 ISLILSVVAIIAAFVWIM 132
>gi|119774560|ref|YP_927300.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
amazonensis SB2B]
gi|119767060|gb|ABL99630.1| succinate dehydrogenase subunit C [Shewanella amazonensis SB2B]
Length = 131
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP+ LQ T VSI+HR++G ++ ++++ + ++
Sbjct: 6 QNVKKQRPVHLDLQTIHFPATAKVSILHRVSGVIMLFAMGILIWLLHASLASAESFQGVQ 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK----INIIASIL 117
D + + ++ A+ +H+LGGIR+L+ D + AK + I SI+
Sbjct: 66 ALFDNFLVKFVIWGILTALGYHLLGGIRHLVMDTGRWEELGSGNASAKAVFVLAITFSII 125
Query: 118 TVLIVW 123
+ VW
Sbjct: 126 AGIWVW 131
>gi|319943670|ref|ZP_08017951.1| succinate dehydrogenase cytochrome b558 subunit [Lautropia
mirabilis ATCC 51599]
gi|319742903|gb|EFV95309.1| succinate dehydrogenase cytochrome b558 subunit [Lautropia
mirabilis ATCC 51599]
Length = 168
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 19 LIPTMFVSIVHRITGSVVYL-GTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYT 77
+ P VSI+HR +G++++L G P +++ E + + + ++ L +
Sbjct: 57 MAPAAQVSILHRASGALMFLIGIPFMLYLLSQSITSESSFEVYSAVVHSWLGKLVLLVLI 116
Query: 78 WAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
W+ HHM G R+++ D+ +K A AK+ ++A LT+ +++
Sbjct: 117 WSFCHHMAAGFRFIVLDMHFLTEKSKAMFSAKV-VLAVSLTMTVIF 161
>gi|323649888|ref|YP_004237261.1| succinate dehydrogenase subunit 3 [Ricinus communis]
gi|322394268|gb|ADW96025.1| succinate dehydrogenase subunit 3 [Ricinus communis]
Length = 103
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHL IY+ T I HRI+G+ +L T V F+ C+ SL C+ +
Sbjct: 5 RPLSPHLPIYKPQLTSTYPISHRISGA--FLATIVFFFYVLCLK------ISLICFTYEN 56
Query: 68 VFEVCLF----------LYTWAVIHHMLGGIRYLIWDVS 96
++ F + A+ +H+ G+R+L+ D S
Sbjct: 57 FYQFFFFSSKLIKISVEMTALALSYHLYNGLRHLLTDFS 95
>gi|283784477|ref|YP_003364342.1| succinate dehydrogenase cytochrome b-556 subunit [Citrobacter
rodentium ICC168]
gi|282947931|emb|CBG87495.1| succinate dehydrogenase cytochrome b-556 subunit [Citrobacter
rodentium ICC168]
Length = 134
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ +++ W +LSS
Sbjct: 9 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILL-WLLGT-----SLSSPEG 62
Query: 63 YMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDVSLCLDKKIATQMAK-----IN 111
+ S F+ W ++ +H++GG+R++ D + A Q + I
Sbjct: 63 FQQASAIMGSFFVKFIMWGILTALAYHVVGGVRHMFMDFGYLEETFEAGQRSAKIAFVIT 122
Query: 112 IIASILTVLIVW 123
++ S+L ++VW
Sbjct: 123 VVLSLLAGVLVW 134
>gi|194664933|ref|XP_001787720.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like isoform 1 [Bos taurus]
gi|297472053|ref|XP_002685667.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like isoform 1 [Bos taurus]
gi|296490234|gb|DAA32347.1| succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like
isoform 1 [Bos taurus]
Length = 169
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-EHTLSSLRCYMD 65
NRPLSPH+ IY M +SI HR TG + G + + E L ++
Sbjct: 49 NRPLSPHISIYGWSLPMAMSICHRGTGIALSAGVSLFGLSALLVPGSFESHLEFVKSLCL 108
Query: 66 G-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
G ++ F + +++H GIR+L+WD+ L Q + ++ ++L+
Sbjct: 109 GPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLTISQLHQSGEAVLVLTVLS 162
>gi|85708849|ref|ZP_01039915.1| hypothetical protein NAP1_06400 [Erythrobacter sp. NAP1]
gi|85690383|gb|EAQ30386.1| hypothetical protein NAP1_06400 [Erythrobacter sp. NAP1]
Length = 111
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 23 MFVSIVHRITGSVVYL-GTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVI 81
M VSI+HR++G + L G V+V+W +A+G + + V L TWA
Sbjct: 1 MLVSILHRVSGDGMALVGLAVLVWWLGALASGPDAYETFLWAAASPLGYVVLIGLTWAFF 60
Query: 82 HHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
HM+ G+R+ + D+ + + ++ I +I +++W
Sbjct: 61 THMMSGLRHFVLDIGAGYELDTNRFWSIVSPIIAIALTVVLW 102
>gi|254586589|ref|XP_002498862.1| ZYRO0G20350p [Zygosaccharomyces rouxii]
gi|238941756|emb|CAR29929.1| ZYRO0G20350p [Zygosaccharomyces rouxii]
Length = 178
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 16/107 (14%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ + + NRP+SPHL IY+ T ++S +HR++G V LG F+ IA G TL L
Sbjct: 48 LRAQRKNRPISPHLTIYQPQMTWYLSSLHRVSG--VMLG---AAFYCLTIAFGVSTLFGL 102
Query: 61 RCYMDGSVF---EVCLFLYTWAV--------IHHMLGGIRYLIWDVS 96
+ E + W H+ G+R+L+WD+
Sbjct: 103 GLNTENLTTWYKEKVPTWFDWTAKGGVAYLFAFHISNGVRHLVWDLG 149
>gi|294637440|ref|ZP_06715730.1| succinate dehydrogenase, cytochrome b556 subunit [Edwardsiella
tarda ATCC 23685]
gi|291089381|gb|EFE21942.1| succinate dehydrogenase, cytochrome b556 subunit [Edwardsiella
tarda ATCC 23685]
Length = 146
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+++K RP++ L R T SI+HR++G +V++ ++++ +
Sbjct: 20 NTVKKQRPVNLDLPTIRFPITAIASILHRVSGVIVFVSIGILLWLLGLSLLSAEGFAQAS 79
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASIL 117
+DG + ++ L+ A+ +H+ GGIR+L+ D + + + A++ A++L
Sbjct: 80 AVVDGVLVKLVLWGILTALAYHICGGIRHLLMDFGYLEETFSVGCRSAQVAFAATVL 136
>gi|145237506|ref|XP_001391400.1| cytochrome B-560 subunit of succinate dehydrogenase [Aspergillus
niger CBS 513.88]
gi|134075872|emb|CAL00251.1| unnamed protein product [Aspergillus niger]
Length = 188
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFCIANGEHT 56
NRP+SPHL IYR T S +HRITG + YL +P ++ W A+
Sbjct: 65 NRPVSPHLSIYRPQITWIGSSIHRITGIALSGSLYLYASAYLASP-MLGWDLGSASAAAA 123
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCL 99
++L ++ +T+ H + G+R+LIWD L
Sbjct: 124 FAALPVVAKVALKTTMALPFTY----HCMNGVRHLIWDTGAGL 162
>gi|254419838|ref|ZP_05033562.1| succinate dehydrogenase, cytochrome b556 subunit [Brevundimonas sp.
BAL3]
gi|196186015|gb|EDX80991.1| succinate dehydrogenase, cytochrome b556 subunit [Brevundimonas sp.
BAL3]
Length = 154
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSV 68
PLSPH+ I+R TM SI+ R T +G +VV W +A G ++ +
Sbjct: 29 PLSPHIGIWRWHVTMAASILFRATIIAATVGALIVVAWLGALAFGPDAYAAALALAGSPL 88
Query: 69 FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
F T + +L G R+ I D L K +T +++I + A + ++ W++
Sbjct: 89 GLFVSFGLTVVLFSFILNGTRHTINDTGNGLTIKSSTILSRIAVWAPVPLAILFWVV 145
>gi|194743886|ref|XP_001954429.1| GF18258 [Drosophila ananassae]
gi|190627466|gb|EDV42990.1| GF18258 [Drosophila ananassae]
Length = 152
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIAN--GEHTLSSLRCYM 64
R LSPHL IY T +SI+HR TG + LG V W + H ++ +
Sbjct: 32 GRKLSPHLTIYSPQLTSMLSIMHRGTG--LALGAGV---WALGVGALISSHDINHYATMV 86
Query: 65 D-----GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ G+ F+ + V +H GIR+L+WD L K
Sbjct: 87 EGLQLSGATLTALKFIIAYPVGYHTANGIRHLLWDTGRFLKIK 129
>gi|328785048|ref|XP_393056.2| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial [Apis mellifera]
Length = 153
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+++ RPLSPHL IY++ T F+SI HR TG ++ + I G+ L+
Sbjct: 49 KNLRLKRPLSPHLTIYQIQLTAFLSITHRTTGMILSSYAMLFGIGTLLIPGGKTLLA--- 105
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+H G+R+L WD+ + L K
Sbjct: 106 ----------------LPATYHTFNGLRHLAWDLGMFLTIK 130
>gi|68466667|ref|XP_722529.1| hypothetical protein CaO19.1480 [Candida albicans SC5314]
gi|68466950|ref|XP_722390.1| hypothetical protein CaO19.9055 [Candida albicans SC5314]
gi|46444361|gb|EAL03636.1| hypothetical protein CaO19.9055 [Candida albicans SC5314]
gi|46444509|gb|EAL03783.1| hypothetical protein CaO19.1480 [Candida albicans SC5314]
gi|238881974|gb|EEQ45612.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 176
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 19/102 (18%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRP SPHLQIY T +S HRITG V G F+ + G S L
Sbjct: 50 RKNRPTSPHLQIYEPQLTWIMSSFHRITG-VAMAGA------FYALTCGFAATSILNIPF 102
Query: 65 DG----SVFEVCLFLYTWAV--------IHHMLGGIRYLIWD 94
D S F + + ++H+ GIR+L+WD
Sbjct: 103 DTTTLVSAFTTLPTFAQYGIKAICAYPFVYHIGNGIRHLVWD 144
>gi|189209924|ref|XP_001941294.1| succinate dehydrogenase cytochrome b560 subunit [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187977387|gb|EDU44013.1| succinate dehydrogenase cytochrome b560 subunit [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 177
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA------NGEH----T 56
NRP+SPHL IYR T S +RITG VV G+ + F IA G H +
Sbjct: 53 NRPVSPHLAIYRPQITSIASAFNRITG-VVLSGS----LYLFGIAYLVAPYTGWHLETQS 107
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ + +V Y + H L G+R+L WDV + +
Sbjct: 108 MVATVAAWPAAVKAGIKAFYAFPFFFHSLNGLRHLAWDVGVGFKNQ 153
>gi|321251937|ref|XP_003192230.1| hypothetical protein CGB_B4140C [Cryptococcus gattii WM276]
gi|317458698|gb|ADV20443.1| Hypothetical Protein CGB_B4140C [Cryptococcus gattii WM276]
Length = 154
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 4/124 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRIT----GSVVYLGTPVVVFWFFCIANGEHT 56
++S + +RP SPHL IY+ T ++S +HRIT G +YL + A
Sbjct: 25 LNSQRQHRPTSPHLAIYQPQLTWYLSSLHRITGVAVGGALYLSAMAYLLHPLVPAIDSAH 84
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
L L + G + F+ H G+R+L WD+ L K + + A++
Sbjct: 85 LIQLVHDLPGWLKGSAKFIIALPFTFHCFNGLRHLNWDIGKALTIKGVYRTGYAVLGATV 144
Query: 117 LTVL 120
L+ L
Sbjct: 145 LSSL 148
>gi|322833847|ref|YP_004213874.1| succinate dehydrogenase, cytochrome b556 subunit [Rahnella sp.
Y9602]
gi|321169048|gb|ADW74747.1| succinate dehydrogenase, cytochrome b556 subunit [Rahnella sp.
Y9602]
Length = 129
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 3 KTVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSLSSPEGFAHAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV-----SLCLDKKIATQMAKINIIASI 116
M+ + + A+ +H+ GG+R+L+ D SL + A + ++ SI
Sbjct: 63 AIMNSFFVKFIFWGILTALAYHVCGGVRHLLMDFGYIEESLAAGTRSAQVAIGLTVVLSI 122
Query: 117 LTVLIVW 123
L ++VW
Sbjct: 123 LAGVLVW 129
>gi|196003862|ref|XP_002111798.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190585697|gb|EDV25765.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 139
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 18/98 (18%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIAN----GEH-----TL 57
NRP+SPHL IY+ T +SI HR +G + L F + +++ EH TL
Sbjct: 20 NRPMSPHLTIYKPQLTSMMSITHRASGMI--LSAYAATFAIYTMSSSGTLAEHIEVWKTL 77
Query: 58 SSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV 95
++ + C F++ + +H + G+R+LIWD+
Sbjct: 78 PAIVPFT-----LKCGFIF--PLYYHAINGVRHLIWDM 108
>gi|255724056|ref|XP_002546957.1| succinate dehydrogenase cytochrome B subunit, mitochondrial
precursor [Candida tropicalis MYA-3404]
gi|240134848|gb|EER34402.1| succinate dehydrogenase cytochrome B subunit, mitochondrial
precursor [Candida tropicalis MYA-3404]
Length = 186
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFCIANGE 54
+ NRP SPHLQIY+ T +S HRITG + + T ++ F A
Sbjct: 59 RRNRPSSPHLQIYQPQLTWILSSFHRITGVAMAGAFYALTCTFAATSILGI-HFDTATLV 117
Query: 55 HTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWD 94
+ L + +V C + + + H+ GIR+L+WD
Sbjct: 118 SAFTELPVTLQYAVKAACAYPF----VFHVGNGIRHLVWD 153
>gi|310800693|gb|EFQ35586.1| succinate dehydrogenase cytochrome b subunit [Glomerella
graminicola M1.001]
Length = 188
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
Query: 7 NRPLSPHLQIYRLIPTMF-VSIVHRITGS------VVYLGTPVV---VFWFFCIANGEHT 56
NRP+SPHL IY++ T F SI RITG VY GT +V + W +
Sbjct: 63 NRPVSPHLSIYKMEQTWFGASIWTRITGGGLSAAFYVYFGTYLVAPLLGWHVESQSLVAA 122
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK 101
+L G + FL W H GIR+L +D+ K
Sbjct: 123 FGALPLAAKGGL----KFLVAWPFTFHFFNGIRHLTYDLVKGFTK 163
>gi|195111370|ref|XP_002000252.1| GI22625 [Drosophila mojavensis]
gi|193916846|gb|EDW15713.1| GI22625 [Drosophila mojavensis]
Length = 152
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT-PVVVFWFFCIANGEHTLSSLRC-YM 64
R +SPHL IY+ T +S++HR TG V+ LG + + + H ++ + +
Sbjct: 32 GREMSPHLTIYKPQLTSLLSVMHRGTGLVLGLGVWGLGIGALVASQDISHYVTMVEGLQL 91
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
G+ F+ + +H G+R+L+WD L K
Sbjct: 92 SGASLTAIKFILAYPFGYHAANGVRHLLWDTGRFLKIK 129
>gi|320582704|gb|EFW96921.1| succinate dehydrogenase cytochrome b subunit, mitochondrial
precursor, putative [Pichia angusta DL-1]
Length = 170
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV--VFWFFCIANGEHTLSSLRC 62
+ NRP SPHLQIY+ T +S HRITG + G V + F +A ++L
Sbjct: 45 RKNRPSSPHLQIYQPQLTWILSSFHRITGVGLAAGFYAVTCTYAFTSLAGIPFDTATLVS 104
Query: 63 YMDGSVFEVCLFLYTWAVIH---HMLGGIRYLIWDVSLCLDKK 102
+ G + L A H+ G+R+L+WD L K
Sbjct: 105 VVAGLPVAAKVGLKAAASFPFAFHVANGVRHLVWDFGKELTLK 147
>gi|90406983|ref|ZP_01215173.1| succinate dehydrogenase cytochrome b556 subunit [Psychromonas sp.
CNPT3]
gi|90311854|gb|EAS39949.1| succinate dehydrogenase cytochrome b556 subunit [Psychromonas sp.
CNPT3]
Length = 124
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ NRP + L + T SI+HR++G +V++ + +F + + Y
Sbjct: 1 MHKNRPKNLDLATVKFPITATASILHRVSGIIVFISLAIFMFLLNLSLSSALGFHQVLGY 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK----INIIASILTV 119
D E ++ + +HM+ G+R++I D+ + + A+ A+ + I S+L
Sbjct: 61 FDNLFIEFIMWGALTGLAYHMVFGVRHMIQDLGFWEEMESASTSARYGFVLTFILSVLAG 120
Query: 120 LIVW 123
++VW
Sbjct: 121 VLVW 124
>gi|88798678|ref|ZP_01114261.1| putative succinate dehydrogenase, hydrophobic subunit [Reinekea sp.
MED297]
gi|88778441|gb|EAR09633.1| putative succinate dehydrogenase, hydrophobic subunit [Reinekea sp.
MED297]
Length = 124
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+KNNRP++ L R+ T SI HR+TG +++ V F + ++ + R
Sbjct: 1 MKNNRPVNLDLTTIRMPVTAIASITHRVTGVGLFV---AVGFLLWALSTSLESAEGFR-Q 56
Query: 64 MDGSVFEVCLFLYTWA----VIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G + TW V++H++ GI++L D K+ +K+ ++ S + +
Sbjct: 57 VQGVMSHWFAKFITWGIVSFVVYHLIAGIKHLFMDAGYFETKETGPVASKVVLVLSAIGI 116
Query: 120 LIV 122
++V
Sbjct: 117 VLV 119
>gi|261343509|ref|ZP_05971154.1| succinate dehydrogenase, cytochrome b556 subunit [Providencia
rustigianii DSM 4541]
gi|282568655|gb|EFB74190.1| succinate dehydrogenase, cytochrome b556 subunit [Providencia
rustigianii DSM 4541]
Length = 129
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 7/126 (5%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ T SI+HR++G + + ++++ +
Sbjct: 5 VKKQRPVNLDLQTIHFPITAISSILHRVSGVITLIAVGILLWLLGTSLSSPEGFQYASEL 64
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK------INIIASIL 117
M G + L+ A+ +H+ GGIR+++ D C+D+ +A + I +I +IL
Sbjct: 65 MTGFFAKFILWGILTALAYHICGGIRHMLMDFG-CVDETLAAGNSSAKITFVITVILAIL 123
Query: 118 TVLIVW 123
++VW
Sbjct: 124 AGILVW 129
>gi|85090713|ref|XP_958549.1| hypothetical protein NCU07756 [Neurospora crassa OR74A]
gi|28919920|gb|EAA29313.1| hypothetical protein NCU07756 [Neurospora crassa OR74A]
Length = 180
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMF-VSIVHRITG----------SVVYLGTPVVVFWFFC 49
++ + NRP+SPHL+IY T F S RITG +V YL P+V W
Sbjct: 49 LAKQRLNRPVSPHLEIYDPKQTWFGGSAWQRITGASFSGALYASAVAYLAAPLVG-WHLE 107
Query: 50 IANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK 101
A+ ++L + G++ FL W + H + G+R+L +D+ + +
Sbjct: 108 SASLVAAAAALPVAVKGAL----KFLVAWPFVFHAINGVRHLAFDLGIGFSR 155
>gi|256822762|ref|YP_003146725.1| succinate dehydrogenase, cytochrome b556 subunit [Kangiella
koreensis DSM 16069]
gi|256796301|gb|ACV26957.1| succinate dehydrogenase, cytochrome b556 subunit [Kangiella
koreensis DSM 16069]
Length = 125
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC- 62
+ RP + +L R SI+HRITG +++ P+++ W + S L+
Sbjct: 1 MNQKRPTNLNLATIRFPVPAISSILHRITGVILFFAVPILL-WMLQKSLTPAGFSELQTM 59
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASIL--TVL 120
+ + +++ L+ T AV +H++ G+R+L+ D+ + + + A + II S + VL
Sbjct: 60 FAESFLWQFILWAITTAVAYHVIAGVRHLLMDMDIGESLEGGRRGAWLVIILSAVAAAVL 119
Query: 121 IVWI 124
VW+
Sbjct: 120 GVWV 123
>gi|158562454|gb|ABW74134.1| succinate dehydrogenase cytochrome b560 subunit [Mucor racemosus]
Length = 180
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RP+SPHLQIY+ T ++S +HR+TG V LG F+ A +L +D +
Sbjct: 58 RPVSPHLQIYQPQITWYLSGLHRVTG--VALGGA-----FYLGALAYVAAPALGVTIDTA 110
Query: 68 VFEVCLFLYTWAV------------IHHMLGGIRYLIWDVSLCLDKK 102
+A+ + H L G+R+L+WD + LD K
Sbjct: 111 SIISAATAAPFALKFAAKTTVAAPFVFHCLNGVRHLVWDATKMLDIK 157
>gi|295096572|emb|CBK85662.1| succinate dehydrogenase subunit C [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 159
Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ L+ R T SI+HR++G + ++ +++ W +LSS
Sbjct: 34 NVKKQRPVNLDLKTIRFPVTAIASILHRVSGVITFVAVGILL-WLLGT-----SLSSPEG 87
Query: 63 YMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDVSLCLD-----KKIATQMAKIN 111
++ S F+ W ++ +H++GG+R+++ D + K+ A I
Sbjct: 88 FLQASAIMNSFFVKFIMWGILTALAYHVVGGVRHMLMDFGYLEETFEAGKRTANISFVIT 147
Query: 112 IIASILTVLIVW 123
++ S+L ++VW
Sbjct: 148 VVLSLLAGVLVW 159
>gi|92113339|ref|YP_573267.1| succinate dehydrogenase subunit C [Chromohalobacter salexigens DSM
3043]
gi|91796429|gb|ABE58568.1| succinate dehydrogenase subunit C [Chromohalobacter salexigens DSM
3043]
Length = 125
Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 9/127 (7%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L + SI HRITG ++++G ++F F+ + +
Sbjct: 1 MNSKRPVNLDLTTIKFPLPALTSIAHRITGIILFIG---LIFGFWALDVSLSSPEGFEAV 57
Query: 64 MDGSVFEVCLFLYTWAVIH----HMLGGIRYLIWDVSLCLDKKIATQMAKIN-IIASILT 118
D V L W ++ H + GI++L+ D + +D + + A+I +I++IL
Sbjct: 58 RDTLANNVLAKLIAWGLLSALGFHFVAGIKHLLMDAGIGVDLEGGYRKAQITVVISAILV 117
Query: 119 VLI-VWI 124
VL VW+
Sbjct: 118 VLAGVWV 124
>gi|323332076|gb|EGA73487.1| YMR118C-like protein [Saccharomyces cerevisiae AWRI796]
Length = 228
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 16/111 (14%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-------EH 55
S + RP+SPHL +Y + ++S +HRI+G ++ LG F+ F I G +
Sbjct: 100 SQRKKRPISPHLTVYEPEMSWYLSSLHRISGVLLALG-----FYAFTITLGVTTIMGMDT 154
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIH----HMLGGIRYLIWDVSLCLDKK 102
T L + + + ++ + + H GIR+LIWD+ L +
Sbjct: 155 TFQDLNKWYHEKMPKWSQWVAKGSAAYLFAFHFGNGIRHLIWDMGYELTNR 205
>gi|58258559|ref|XP_566692.1| succinate dehydrogenase (ubiquinone) [Cryptococcus neoformans var.
neoformans JEC21]
gi|134106659|ref|XP_778340.1| hypothetical protein CNBA3400 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50261043|gb|EAL23693.1| hypothetical protein CNBA3400 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57222829|gb|AAW40873.1| succinate dehydrogenase (ubiquinone), putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 221
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 22/133 (16%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFCI 50
++S + +RP SPHL IY+ T ++S +HRITG ++ YL P+V +
Sbjct: 92 LNSQRQHRPTSPHLAIYQPQLTWYLSSLHRITGVAFGGALYLSAMAYLLHPLV-----PV 146
Query: 51 ANGEHTLS---SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQM 107
+ H + L + GS + +T+ H G+R+L WD+ L K +
Sbjct: 147 IDSAHLIQLVHDLPGWFKGSAKFIIALPFTF----HCYNGLRHLNWDIGKALTIKGVYRT 202
Query: 108 AKINIIASILTVL 120
+ A++L+ L
Sbjct: 203 GYAVLGATVLSSL 215
>gi|171693117|ref|XP_001911483.1| hypothetical protein [Podospora anserina S mat+]
gi|170946507|emb|CAP73308.1| unnamed protein product [Podospora anserina S mat+]
Length = 184
Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 16/107 (14%)
Query: 7 NRPLSPHLQIYRLIPTMF-VSIVHRITGS----------VVYLGTPVVVFWFFCIANGEH 55
NRP+SPHL IY T F SI R TGS YL P++ W A
Sbjct: 59 NRPVSPHLDIYDKQQTFFGGSIWQRFTGSGLSGGLYVFGAAYLAAPLLG-WHLESA---- 113
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+L S + +V FL W H G+R+L D+ + + ++
Sbjct: 114 SLVSAFGALPFAVKSGVKFLVAWPFAFHAFNGVRHLALDLGMFMKRQ 160
>gi|212712449|ref|ZP_03320577.1| hypothetical protein PROVALCAL_03543 [Providencia alcalifaciens DSM
30120]
gi|212684906|gb|EEB44434.1| hypothetical protein PROVALCAL_03543 [Providencia alcalifaciens DSM
30120]
Length = 129
Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 7/126 (5%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ T SI+HR++G + + ++++ +
Sbjct: 5 VKKQRPVNLDLQTIHFPITAISSILHRVSGVITLIAVGILLWLLGTSLSSPEGFQYASEI 64
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK------INIIASIL 117
M G + L+ A+ +H+ GGIR+++ D C+D+ +A + I +I +IL
Sbjct: 65 MTGFFAKFILWGILTALAYHICGGIRHMLMDFG-CVDETLAAGNSSAKITFVITVILAIL 123
Query: 118 TVLIVW 123
++VW
Sbjct: 124 AGILVW 129
>gi|262281274|ref|ZP_06059056.1| succinate dehydrogenase cytochrome b556 subunit [Acinetobacter
calcoaceticus RUH2202]
gi|262257505|gb|EEY76241.1| succinate dehydrogenase cytochrome b556 subunit [Acinetobacter
calcoaceticus RUH2202]
Length = 133
Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 70/138 (50%), Gaps = 19/138 (13%)
Query: 1 MSSIKNNRP----LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP + L + P SI+HR++G +V+L PV++ W + +
Sbjct: 1 MPAVKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLVPVLL-WIL-----DKS 54
Query: 57 LSSLRC--YMDGSVF-----EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
LSS Y+ VF ++++ ++ H + G+++L+ D+ + + A
Sbjct: 55 LSSPEGFDYVKNVVFGNILVRFIVWVFVAGLLFHFIAGVKHLLADLGFAEELQSGRIAAT 114
Query: 110 INIIASILTVL--IVWII 125
I++I S++ ++ VWI+
Sbjct: 115 ISLILSVVAIIAAFVWIM 132
>gi|328876220|gb|EGG24583.1| succinate dehydrogenase [Dictyostelium fasciculatum]
Length = 216
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 20/29 (68%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITG 33
KNNRP SPHL IY+L +SI HR TG
Sbjct: 68 KNNRPTSPHLTIYKLPQPAILSITHRATG 96
>gi|195157732|ref|XP_002019750.1| GL12041 [Drosophila persimilis]
gi|198455279|ref|XP_002138040.1| GA19764 [Drosophila pseudoobscura pseudoobscura]
gi|194116341|gb|EDW38384.1| GL12041 [Drosophila persimilis]
gi|198133177|gb|EDY68598.1| GA19764 [Drosophila pseudoobscura pseudoobscura]
Length = 152
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 12/126 (9%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIAN--GEHTLSSL---- 60
R LSPHL IY+ T +S++HR TG + +G W + H +S
Sbjct: 32 GRELSPHLSIYQPQLTSILSVMHRGTGMALGVGV-----WALGLGALISSHDISHYVTMV 86
Query: 61 -RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G+ F+ + +H GIR+L WD L K + AS +
Sbjct: 87 EGLQLSGATLTALKFIIAYPAGYHTANGIRHLFWDTGRFLKIKEVYSTGYAMVAASFVLT 146
Query: 120 LIVWII 125
I+ +I
Sbjct: 147 AILALI 152
>gi|281206854|gb|EFA81038.1| succinate dehydrogenase [Polysphondylium pallidum PN500]
Length = 205
Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RP+SPHL IY+L +S+ HR TG + LG + + + +
Sbjct: 79 QPERPISPHLTIYKLPMPAILSVTHRATG--IALGVGLATLAGLSVFGAHDVPYYIELFK 136
Query: 65 DG--SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIASILTVLI 121
S+ F + + H GIR++ WD L ++ K A I + AS+ LI
Sbjct: 137 QSYPSLVYPARFCVAFPITFHAFAGIRHIYWDTFLKGINTKPAEFTGMIILAASLGVSLI 196
Query: 122 V 122
V
Sbjct: 197 V 197
>gi|268590352|ref|ZP_06124573.1| succinate dehydrogenase, cytochrome b556 subunit [Providencia
rettgeri DSM 1131]
gi|291314262|gb|EFE54715.1| succinate dehydrogenase, cytochrome b556 subunit [Providencia
rettgeri DSM 1131]
Length = 129
Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 7/126 (5%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ T SI+HR++G + + ++++ +
Sbjct: 5 VKKQRPVNLDLQTIHFPITAISSILHRVSGVITLIAVGILLWLLGTSLSSPEGFQYASEI 64
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK------INIIASIL 117
M G + L+ A+ +H+ GGIR+++ D C+D+ +A + I +I +IL
Sbjct: 65 MTGFFAKFILWGILTALAYHICGGIRHMLMDFG-CVDETLAAGNSSAKITFVITVILAIL 123
Query: 118 TVLIVW 123
++VW
Sbjct: 124 AGVLVW 129
>gi|213408543|ref|XP_002175042.1| succinate dehydrogenase (ubiquinone) cytochrome b subunit
[Schizosaccharomyces japonicus yFS275]
gi|212003089|gb|EEB08749.1| succinate dehydrogenase (ubiquinone) cytochrome b subunit
[Schizosaccharomyces japonicus yFS275]
Length = 178
Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 19/106 (17%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFC- 49
++ + +RP SPHL IY+ T ++S HRITG S YL P + F
Sbjct: 49 LAQQRVHRPNSPHLTIYQPQLTWYLSSAHRITGVALSGTLYLFSTAYLLAPAFGYGFDSN 108
Query: 50 -IANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWD 94
IA H +S + ++ F+ + + HM G R+L+WD
Sbjct: 109 MIA---HAVSQVPVWLK----VPAKFIVAYPLAFHMFNGFRHLLWD 147
>gi|330929855|ref|XP_003302800.1| hypothetical protein PTT_14754 [Pyrenophora teres f. teres 0-1]
gi|311321608|gb|EFQ89104.1| hypothetical protein PTT_14754 [Pyrenophora teres f. teres 0-1]
Length = 177
Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA------NGEH----T 56
NRP+SPHL IYR T S ++RITG +V G+ + F IA G H +
Sbjct: 53 NRPVSPHLAIYRPQITWLASSLNRITG-IVLSGS----LYLFGIAYLVAPYTGWHLETQS 107
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ + +V Y + H L G+R+L WDV + +
Sbjct: 108 MVATVAAWPAAVKAGLKAFYAFPFFFHSLNGLRHLAWDVGVGFKNQ 153
>gi|119503172|ref|ZP_01625256.1| succinate dehydrogenase (C subunit) [marine gamma proteobacterium
HTCC2080]
gi|119460818|gb|EAW41909.1| succinate dehydrogenase (C subunit) [marine gamma proteobacterium
HTCC2080]
Length = 129
Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 57/112 (50%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
K+ RP++ L +L T +VSI HR++G ++L + ++V+ E +S+ +
Sbjct: 7 KDKRPVNLDLGSMQLPITAYVSITHRLSGVFLFLVSGLMVWALDTSLRSEEGFNSVASTL 66
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ + L+L A+ +H L G++++I D + + A+I I +I
Sbjct: 67 TMPLSKAILWLIASALSYHALSGVKHIIMDFGIGETMQGGVTGARIVIALAI 118
>gi|271499747|ref|YP_003332772.1| succinate dehydrogenase, cytochrome b556 subunit [Dickeya dadantii
Ech586]
gi|270343302|gb|ACZ76067.1| succinate dehydrogenase, cytochrome b556 subunit [Dickeya dadantii
Ech586]
Length = 129
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 61/125 (48%), Gaps = 5/125 (4%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 5 VKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSLSSQEGFVQAAAI 64
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAK----INIIASILT 118
M + + ++ A+ +H++GG+R+L+ D + + ++ AK I ++ S L
Sbjct: 65 MGSFIVKFVVWGILTALAYHIVGGLRHLLMDFGYIEENFEAGSRSAKTSFIITVVLSFLA 124
Query: 119 VLIVW 123
++VW
Sbjct: 125 GVLVW 129
>gi|323353090|gb|EGA85390.1| YMR118C-like protein [Saccharomyces cerevisiae VL3]
Length = 196
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 16/111 (14%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-------EH 55
S + RP+SPHL +Y + ++S +HRI+G ++ LG F+ F I G +
Sbjct: 68 SQRKKRPISPHLTVYEPEMSWYLSSLHRISGVLLALG-----FYAFTITLGVTTIMGMDT 122
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIH----HMLGGIRYLIWDVSLCLDKK 102
T L + + + ++ + + H GIR+LIWD+ L +
Sbjct: 123 TFQDLNKWYHEKMPKWSQWVAKGSAAYLFAFHFGNGIRHLIWDMGYELTNR 173
>gi|151946274|gb|EDN64505.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190408347|gb|EDV11612.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
gi|207342306|gb|EDZ70103.1| YMR118Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259148692|emb|CAY81937.1| EC1118_1M3_2916p [Saccharomyces cerevisiae EC1118]
gi|323303544|gb|EGA57336.1| YMR118C-like protein [Saccharomyces cerevisiae FostersB]
gi|323307750|gb|EGA61013.1| YMR118C-like protein [Saccharomyces cerevisiae FostersO]
gi|323336310|gb|EGA77581.1| YMR118C-like protein [Saccharomyces cerevisiae Vin13]
gi|323347196|gb|EGA81471.1| YMR118C-like protein [Saccharomyces cerevisiae Lalvin QA23]
Length = 196
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-------EH 55
S + RP+SPHL +Y + ++S +HRI+G ++ LG F+ F I G +
Sbjct: 68 SQRKKRPISPHLTVYEPEMSWYLSSLHRISGVLLALG-----FYAFTITLGVTTIMGMDT 122
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIH----HMLGGIRYLIWDVSLCLDKKIATQMAKIN 111
T L + + + ++ + + H GIR+LIWD+ L + + I
Sbjct: 123 TFQDLNKWYHEKMPKWSQWVAKGSAAYLFAFHFGNGIRHLIWDMGYELTNRGVIKTGSIV 182
Query: 112 IIASIL 117
+ +++
Sbjct: 183 LAGTLV 188
>gi|6323765|ref|NP_013836.1| hypothetical protein YMR118C [Saccharomyces cerevisiae S288c]
gi|2493413|sp|Q04487|YM07_YEAST RecName: Full=Putative succinate dehydrogenase [ubiquinone]
cytochrome b subunit, mitochondrial; Flags: Precursor
gi|817878|emb|CAA89756.1| unknown [Saccharomyces cerevisiae]
gi|45269828|gb|AAS56294.1| YMR118C [Saccharomyces cerevisiae]
gi|285814120|tpg|DAA10015.1| TPA: hypothetical protein YMR118C [Saccharomyces cerevisiae S288c]
Length = 196
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 16/111 (14%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-------EH 55
S + RP+SPHL +Y + ++S +HRI+G ++ LG F+ F I G +
Sbjct: 68 SQRKKRPISPHLTVYEPEMSWYLSSLHRISGVLLALG-----FYAFTITLGVTTIMGMDT 122
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIH----HMLGGIRYLIWDVSLCLDKK 102
T L + + + ++ + + H GIR+LIWD+ L +
Sbjct: 123 TFQDLNKWYHEKMPKWSQWVAKGSAAYLFAFHFGNGIRHLIWDMGYELTNR 173
>gi|56478026|ref|YP_159615.1| putative succinate dehydrogenase cytochrome B subunit (succinate
dehydrogenase, cytochrome b556 subunit [Aromatoleum
aromaticum EbN1]
gi|56314069|emb|CAI08714.1| putative succinate dehydrogenase cytochrome B subunit (Succinate
dehydrogenase, cytochrome b556 subunit [Aromatoleum
aromaticum EbN1]
Length = 128
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 25 VSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHM 84
SI HRI+G ++ + P + GE +LR + + L + WA HH+
Sbjct: 25 ASIGHRISGVLLLITLPFLALALDRSLRGEAEFEALRDLVSAPGRALLLIVVVWAASHHV 84
Query: 85 LGGIRYLIWDVS 96
L G+R+L+ D+
Sbjct: 85 LAGLRHLLMDLG 96
>gi|256269648|gb|EEU04929.1| YMR118C-like protein [Saccharomyces cerevisiae JAY291]
Length = 196
Score = 42.0 bits (97), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 16/111 (14%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-------EH 55
S + RP+SPHL +Y + ++S +HRI+G ++ LG F+ F I G +
Sbjct: 68 SQRKKRPISPHLTVYEPEMSWYLSSLHRISGVLLALG-----FYAFTITLGVTTIMGMDT 122
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIH----HMLGGIRYLIWDVSLCLDKK 102
T L + + + ++ + + H GIR+LIWD+ L +
Sbjct: 123 TFQDLNKWYHEKMPKWSQWVAKGSAAYLFAFHFGNGIRHLIWDMGYELTNR 173
>gi|77457837|ref|YP_347342.1| succinate dehydrogenase subunit C [Pseudomonas fluorescens Pf0-1]
gi|77381840|gb|ABA73353.1| succinate dehydrogenase cytochrome b556 subunit [Pseudomonas
fluorescens Pf0-1]
Length = 124
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K+ RP++ L+ +L T S +HR++G +++LG ++++ E ++
Sbjct: 1 MKSQRPVNLDLRTIKLPITGVTSFLHRVSGIILFLGLGIMLYALGKSLGSEEGYVEVKAC 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
+ + + + A+++H++ G+R+LI D+ + + +K+ I S++ +++
Sbjct: 61 LTSPLAKFVAWGLLSALLYHLVAGVRHLIMDMGIGETLEGGRLGSKLIIAVSVVLIVLAG 120
Query: 122 VWI 124
VWI
Sbjct: 121 VWI 123
>gi|85058850|ref|YP_454552.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Sodalis glossinidius str. 'morsitans']
gi|84779370|dbj|BAE74147.1| succinate dehydrogenase cytochrome b-556 subunit [Sodalis
glossinidius str. 'morsitans']
Length = 128
Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ LQ R T VSI+HR++G ++++ ++++ +
Sbjct: 3 KTVKKQRPVNLDLQTIRFPVTAIVSILHRVSGVIMFVAIGILLWVLGLSLSSPEGFIQAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV-----SLCLDKKIATQMAKINIIASI 116
MD + + + A+ +H L GIR+++ D +L + K A + ++ SI
Sbjct: 63 AMMDSFIVKFIFWGILTALAYHTLCGIRHMLMDFGYLEETLAMGKTTANVTFLLTVVLSI 122
Query: 117 LTVLIV 122
L ++V
Sbjct: 123 LAGVLV 128
>gi|328772132|gb|EGF82171.1| hypothetical protein BATDEDRAFT_36733 [Batrachochytrium
dendrobatidis JAM81]
Length = 205
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
S + +RP+SPHL IY+ T ++S R T + +G V + + ++S
Sbjct: 83 SERLHRPISPHLTIYQPQLTWYLSAAFRATSGALAVGFYGVALAYVFLPISSVAIASFIH 142
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ + + F + H+ G+R+LIWD + L+ K
Sbjct: 143 SLPAAALFLGKFTLAAPISFHLFNGLRHLIWDTATLLNLK 182
>gi|296112295|ref|YP_003626233.1| succinate dehydrogenase subunit C [Moraxella catarrhalis RH4]
gi|295919989|gb|ADG60340.1| succinate dehydrogenase subunit C [Moraxella catarrhalis RH4]
Length = 126
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 19/133 (14%)
Query: 4 IKNNRP----LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
+K+NRP LS + + P SI+HR++G V++L PV++ CI + +LSS
Sbjct: 1 MKSNRPINLPLSQVIAVNSKSPIAMASILHRVSGIVLFLLVPVML----CIL--QTSLSS 54
Query: 60 LRCYMDGSVF-EVCLFLYTW----AVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN-II 113
+ +VF + L W A +H + GI++L+ D + + K A I+ +I
Sbjct: 55 ADSF--AAVFNNIALRFVAWIFVAATAYHFVMGIKHLLADAGMNEELKSGRTAAVISFVI 112
Query: 114 ASILTVL-IVWII 125
A++L V VW++
Sbjct: 113 AAVLIVASFVWVM 125
>gi|226287137|gb|EEH42650.1| succinate dehydrogenase cytochrome b560 subunit [Paracoccidioides
brasiliensis Pb18]
Length = 188
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 15/106 (14%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIAN--GEHTLSSLRCYM 64
NRP+SPHL IY+ T +S ++RITG V G+ + F+ ++ G H L +M
Sbjct: 64 NRPVSPHLSIYQPQVTWVLSSLNRITG-VALAGSLYIFSSFYLVSPLLGWH----LESHM 118
Query: 65 DGSVFEVCLFL------YTWAV--IHHMLGGIRYLIWDVSLCLDKK 102
+ F +T AV + H L G R+LIWD+ K
Sbjct: 119 IAAAFGALPLAAKVGLKFTAAVPFMFHALNGCRHLIWDLGKQFSNK 164
>gi|237730685|ref|ZP_04561166.1| succinate dehydrogenase cytochrome b-556 subunit [Citrobacter sp.
30_2]
gi|226906224|gb|EEH92142.1| succinate dehydrogenase cytochrome b-556 subunit [Citrobacter sp.
30_2]
Length = 146
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 21 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFLTASS 80
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKIN----IIASIL 117
M+ E+ L+ A+ +H + GIR+L+ D + + T+ AKI ++ S+L
Sbjct: 81 IMNNFFVELILWGILIALAYHAVMGIRHLLMDFGYIEETLEAGTRSAKICFVIIVVLSLL 140
Query: 118 TVLIVW 123
++VW
Sbjct: 141 AGVLVW 146
>gi|118781278|ref|XP_311387.3| AGAP010672-PA [Anopheles gambiae str. PEST]
gi|116130095|gb|EAA07051.3| AGAP010672-PA [Anopheles gambiae str. PEST]
Length = 175
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 11/122 (9%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA---NGEHTLSSLRCY 63
RP SPHL IY T +SI HR TG + L + +A + H L+ L
Sbjct: 57 KRPQSPHLTIYSFQLTSMLSITHRFTG--LALTGYITALGLGALAMPHDATHYLTMLEG- 113
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIA-----TQMAKINIIASILT 118
+ F + +H + G+R+L WD+ L K T + ++A +LT
Sbjct: 114 LSAPTLIALKFTMAYPFAYHTVNGVRHLFWDMGKFLTIKEVYTTGYTMLGVSGVLAGLLT 173
Query: 119 VL 120
L
Sbjct: 174 AL 175
>gi|242238586|ref|YP_002986767.1| succinate dehydrogenase, cytochrome b556 subunit [Dickeya dadantii
Ech703]
gi|242130643|gb|ACS84945.1| succinate dehydrogenase, cytochrome b556 subunit [Dickeya dadantii
Ech703]
Length = 129
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 63/126 (50%), Gaps = 5/126 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
S+K RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 4 SVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSLSSQEGFVHAAA 63
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIA-TQMAKIN----IIASIL 117
M + + ++ A+ +H++GG+R+L+ D + A + AKI+ ++ S+L
Sbjct: 64 IMGSFIVKFIVWGILTALSYHIVGGLRHLLMDFGYIEETFAAGSSSAKISFIITVVLSLL 123
Query: 118 TVLIVW 123
++VW
Sbjct: 124 AGVLVW 129
>gi|312959839|ref|ZP_07774355.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
fluorescens WH6]
gi|311286005|gb|EFQ64570.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
fluorescens WH6]
Length = 124
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L+ +L T S +HR++G +++LG ++++ E + ++
Sbjct: 1 MNSQRPVNLDLRTIKLPITGVTSFLHRVSGIILFLGLGIMLYALSKSLGSEEGYAEVKAC 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
+ + + + A+++H++ G+R+LI D+ + + +KI I S++ +++
Sbjct: 61 LTSPLAKFVAWGLLSALLYHLVAGVRHLIMDMGIGETLEGGRLGSKIIIAISVVLIVLAG 120
Query: 122 VWI 124
VWI
Sbjct: 121 VWI 123
>gi|119897840|ref|YP_933053.1| succinate dehydrogenase [Azoarcus sp. BH72]
gi|119670253|emb|CAL94166.1| succinate dehydrogenase [Azoarcus sp. BH72]
Length = 129
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+++ RP + RL VSI+HR++G+ ++L P +++ + ++
Sbjct: 5 TVRKQRPKHLAINEIRLPLPGIVSILHRVSGAGLFLLLPFLLYLLDRSLGSPESFATFEA 64
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI-LTVLI 121
+ + ++ L WA +HH GIR+L+ D+ L+ + A ++I ++ SI LTV+I
Sbjct: 65 VVGHPLVKLILIGLLWAFLHHFCAGIRFLLLDLHKGLELQAARNSSRIVLVVSIALTVII 124
>gi|87119172|ref|ZP_01075070.1| succinate dehydrogenase (C subunit) [Marinomonas sp. MED121]
gi|86165563|gb|EAQ66830.1| succinate dehydrogenase (C subunit) [Marinomonas sp. MED121]
Length = 138
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RP++ + + T VSI+HR+TG ++++G + + F + + +
Sbjct: 14 VNKKRPVNLDIATISMPVTAIVSILHRVTGVILFVGLAFLFYAFDLSLDSQEGFDQVVNA 73
Query: 64 MDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN-IIASILTVLI 121
+ S + + ++ A+++H + GI++L D+ + + AK N +IA+IL +++
Sbjct: 74 LQTSFIAKFIIWGVVSALMYHFVAGIKHLFMDIGYFEELESGQLAAKANLVIAAILILVV 133
Query: 122 -VWI 124
VWI
Sbjct: 134 GVWI 137
>gi|156934786|ref|YP_001438702.1| hypothetical protein ESA_02626 [Cronobacter sakazakii ATCC BAA-894]
gi|156533040|gb|ABU77866.1| hypothetical protein ESA_02626 [Cronobacter sakazakii ATCC BAA-894]
Length = 129
Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ + RP++ L R T SI+HR++G + ++ ++++ + + +
Sbjct: 2 IKKVNKQRPVNLDLTTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSLSSQEGFLTA 61
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK-----INIIAS 115
MD + L+ A+ +H++GG+R+++ D + A Q + I ++ S
Sbjct: 62 SNIMDSFFVKFILWGILTALAYHVVGGVRHMLMDFGYLEETFAAGQRSAKFAFIITVVLS 121
Query: 116 ILTVLIVW 123
IL ++VW
Sbjct: 122 ILAGVLVW 129
>gi|90411595|ref|ZP_01219605.1| putative succinate dehydrogenase; fumarate reductase, cytochrome
bsubunit [Photobacterium profundum 3TCK]
gi|90327485|gb|EAS43838.1| putative succinate dehydrogenase; fumarate reductase, cytochrome
bsubunit [Photobacterium profundum 3TCK]
Length = 126
Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA-NGEHTLSSLRC 62
+K RP++ LQ R T SI+HR++G + ++ +++ W I+ + +S
Sbjct: 3 VKKPRPVNLDLQTIRFPLTAIASILHRVSGVITFVSVAILL-WLLNISLSSPEGFASAAS 61
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN-IIASILTVL- 120
D + L+ A+ +H++ G+R+LI D+ + + K++ +I ++L+V
Sbjct: 62 IADSFFVKFILWGVLTALFYHIVVGVRHLIMDMGYFEEMETGIASTKVSFVIVAVLSVFA 121
Query: 121 --IVW 123
+VW
Sbjct: 122 GGLVW 126
>gi|326387615|ref|ZP_08209221.1| succinate dehydrogenase subunit C [Novosphingobium nitrogenifigens
DSM 19370]
gi|326207661|gb|EGD58472.1| succinate dehydrogenase subunit C [Novosphingobium nitrogenifigens
DSM 19370]
Length = 120
Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFF-CIANGEHTLSSLRCYM---DGS--------VFE 70
M VSI+HR+TG+ + ++ W+ IA GE + + ++ GS + +
Sbjct: 1 MLVSILHRVTGNGLAFAGLALLLWWVGAIAGGEQSYQTFISFVWTGAGSPLAALTAILAK 60
Query: 71 VCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ L TWA HM G+R+L+ D+ + + + + + ++ S+L + W
Sbjct: 61 LVLVGLTWAFFQHMASGLRHLVLDIGVGYELHTNARWSVLTLVFSVLATALFW 113
>gi|261341308|ref|ZP_05969166.1| succinate dehydrogenase, cytochrome b556 subunit [Enterobacter
cancerogenus ATCC 35316]
gi|288316612|gb|EFC55550.1| succinate dehydrogenase, cytochrome b556 subunit [Enterobacter
cancerogenus ATCC 35316]
Length = 134
Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ L+ R T SI+HR++G + ++ +++ W +LSS
Sbjct: 9 NVKKQRPVNLDLKTIRFPVTAIASILHRVSGVITFVAVGILL-WLLGT-----SLSSPEG 62
Query: 63 YMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDVSLCLD-----KKIATQMAKIN 111
++ S F+ W ++ +H++GG+R+++ D + K+ A +
Sbjct: 63 FLQASAIMNSFFVKFIMWGILTALAYHVVGGVRHMLMDFGYLEETFEAGKRSANISFVLT 122
Query: 112 IIASILTVLIVW 123
++ SIL ++VW
Sbjct: 123 VVLSILAGVLVW 134
>gi|225717610|gb|ACO14651.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Caligus clemensi]
Length = 173
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG----SVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
NRP+SPHL IY+ T +SI HRI+G +++Y G F F + N T
Sbjct: 56 NRPMSPHLTIYKPQLTSMLSISHRISGMYLTAILYSGG----FLPFVLPNNFPTFIQ-SI 110
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
+ + F + H G+R+L+WD+
Sbjct: 111 EIAPLLVTAGKFAIAFPFAFHTYNGLRHLLWDMG 144
>gi|71278847|ref|YP_268940.1| succinate dehydrogenase, cytochrome b556 subunit [Colwellia
psychrerythraea 34H]
gi|71144587|gb|AAZ25060.1| succinate dehydrogenase, cytochrome b556 subunit [Colwellia
psychrerythraea 34H]
Length = 124
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 49/93 (52%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ L ++ P SI+HR++G ++ +++F + + ++ Y
Sbjct: 1 MKKQRPVNLDLTTIKMHPAANASILHRVSGVIMVFAIGILLFTLSTSLSSAEGFAQIQGY 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
+DG F+ +F A+ H+L G+R+L+ D+
Sbjct: 61 LDGFFFKFIIFGCLSALTFHVLAGVRHLLMDLG 93
>gi|209738020|gb|ACI69879.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
Length = 170
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE-------HTL 57
K NRP+SPH+ IY+ M +SI HR TG + G + H+L
Sbjct: 47 KLNRPMSPHITIYQWSVPMMMSITHRGTGVGLSGGILAFALLALVLPGNYPYYLDLIHSL 106
Query: 58 SSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASIL 117
S + ++ + F + + +H L GIR+L WD + + I+ SIL
Sbjct: 107 S-----IGPALLGLAKFGIAFPLSYHTLNGIRHLFWDSGKGFTLPEVYRSGYVVIVLSIL 161
Query: 118 T 118
T
Sbjct: 162 T 162
>gi|255949166|ref|XP_002565350.1| Pc22g14260 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592367|emb|CAP98714.1| Pc22g14260 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 187
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 21/110 (19%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFCIANGEHT 56
NRP++PHL IY+ S +HRITG + YL +P + W A
Sbjct: 64 NRPVAPHLTIYKPQIGWIGSSLHRITGVALSGTLYIWATAYLASP-ALGWHLESA----- 117
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVI---HHMLGGIRYLIWDVSLCLDKKI 103
S+ M + L T + +H + GIR+L+WD+ L +
Sbjct: 118 --SMVAAMGALPLAAKVLLKTTLALPFTYHAMNGIRHLMWDLGRGLTNPV 165
>gi|160897868|ref|YP_001563450.1| succinate dehydrogenase, cytochrome b556 subunit [Delftia
acidovorans SPH-1]
gi|160363452|gb|ABX35065.1| succinate dehydrogenase, cytochrome b556 subunit [Delftia
acidovorans SPH-1]
Length = 140
Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 14 LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS----VF 69
L YRL P VSI+HRI+G ++++ P +++ E + G +
Sbjct: 20 LPTYRLPPAGIVSILHRISGLLMFILLPFILWMMDMSLTSEISFDGFTSVFAGPFGWFLK 79
Query: 70 EVCLFLYTWAVIHHMLGGIRYLIWDVS 96
VCL L WA +HH G+R+L DV+
Sbjct: 80 LVCLAL-IWAYLHHFCAGVRHLFMDVN 105
>gi|242788126|ref|XP_002481157.1| succinate dehydrogenase, putative [Talaromyces stipitatus ATCC
10500]
gi|218721304|gb|EED20723.1| succinate dehydrogenase, putative [Talaromyces stipitatus ATCC
10500]
Length = 194
Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFCIANGEHT 56
RP+SPH+ IY+ SI+ R +G + Y+ TP+V + + + E
Sbjct: 66 RRPVSPHMTIYKWQYQSLTSILQRFSGIFLAGGLYVFATGYVLTPIVSPGYTDLFDIETI 125
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ +LR + G + V F + +H G+++L+WD+ + L K
Sbjct: 126 VGALRE-VPGWIKGVGKFALSMPFTYHFYNGVKHLMWDLGVGLSHK 170
>gi|300715874|ref|YP_003740677.1| succinate dehydrogenase cytochrome b-556 subunit [Erwinia
billingiae Eb661]
gi|299061710|emb|CAX58826.1| Succinate dehydrogenase cytochrome b-556 subunit [Erwinia
billingiae Eb661]
Length = 129
Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ L R T SI+HR++G + ++ ++++ +
Sbjct: 3 KTVKKQRPVNLDLSTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSLSSPEGFLQAS 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMAKIN----IIASI 116
M + ++ A+ +H++GGIR+++ D L +I T+ A+I+ ++ SI
Sbjct: 63 AVMGSFFVKFIMWGILTALAYHIVGGIRHMLMDFGYLGETLQIGTRSAQISFGITVVLSI 122
Query: 117 LTVLIVW 123
L ++VW
Sbjct: 123 LAGVLVW 129
>gi|295687606|ref|YP_003591299.1| succinate dehydrogenase cytochrome b556 subunit [Caulobacter segnis
ATCC 21756]
gi|295429509|gb|ADG08681.1| succinate dehydrogenase, cytochrome b556 subunit [Caulobacter
segnis ATCC 21756]
Length = 135
Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RP+SPHLQ++R TM SI+HR +++G ++ W +A G + +
Sbjct: 10 ERPMSPHLQVWRWHITMACSILHRACVVGLWVGAVILAGWAAALAAGPDAYAGYTAVLGS 69
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ ++ L T+AV ++ IR WD + A + I ++ ++ W+I
Sbjct: 70 PIGKLVLLGETFAVFFNVAYTIRQTFWDAGKGFQPRTADMTGAMAIAFAVAATIVTWVI 128
>gi|149040640|gb|EDL94597.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, isoform CRA_d [Rattus norvegicus]
Length = 140
Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 27/98 (27%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ +NRP+SPHL IYR M +S+ HR GS + + V +F
Sbjct: 45 NTSSNRPVSPHLTIYRWSLPMAMSVCHR--GSGIAMSGGVSLFGLS-------------- 88
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
F+ + +++H L G+R+L+WD+ L
Sbjct: 89 -----------FVLVFPLMYHSLNGVRHLMWDLGKGLS 115
>gi|241950825|ref|XP_002418135.1| succinate dehydrogenase cytochrome b subunit, mitochondrial
precursor, putative [Candida dubliniensis CD36]
gi|223641474|emb|CAX43435.1| succinate dehydrogenase cytochrome b subunit, mitochondrial
precursor, putative [Candida dubliniensis CD36]
Length = 176
Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 19/102 (18%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRP SPHLQIY+ T +S HRITG V G F+ + G S L
Sbjct: 50 RKNRPTSPHLQIYQPQLTWIMSSFHRITG-VAMAGA------FYGLTCGFAATSILNIPF 102
Query: 65 DGSV---FEVCLFLY---------TWAVIHHMLGGIRYLIWD 94
D + + L ++ + + H+ GIR+LIWD
Sbjct: 103 DTTTLISYFTALPIFAQYGLKAICAYPFVFHIGNGIRHLIWD 144
>gi|317047341|ref|YP_004114989.1| succinate dehydrogenase, cytochrome b556 subunit [Pantoea sp.
At-9b]
gi|316948958|gb|ADU68433.1| succinate dehydrogenase, cytochrome b556 subunit [Pantoea sp.
At-9b]
Length = 129
Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ L R T SI+HR++G + ++ ++++ +
Sbjct: 3 KTVKKQRPVNLDLSTIRFPVTAISSILHRVSGVITFVALGILLWLLGLSLSSPEGFLQAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAK----INIIASI 116
MD + ++ A+ +H++GGIR+++ D + ++ T+ A+ I ++ SI
Sbjct: 63 SIMDSFFAKFIMWGILTALAYHVVGGIRHMLADFGFMEETLQVGTRSAQAAFVITVVLSI 122
Query: 117 LTVLIVW 123
L ++VW
Sbjct: 123 LAGVLVW 129
>gi|218847754|ref|NP_001136371.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa [Xenopus (Silurana) tropicalis]
gi|163915714|gb|AAI57547.1| LOC496650 protein [Xenopus (Silurana) tropicalis]
Length = 169
Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
NRPLSPH+ IY+ M +SI HR TG + G V +F + S L
Sbjct: 49 NRPLSPHITIYKWSLPMAMSISHRGTGIAMTAG--VSLFGLAALVLPGDFASYLELVKSL 106
Query: 67 SVFEVCL----FLYTWAVIHHMLGGIRYLIWDVSLCLD 100
S+ + F + + +H+ GIR+L WD+ L
Sbjct: 107 SLGPALIYSAKFALAFPLTYHVWNGIRHLTWDLGKGLK 144
>gi|242021634|ref|XP_002431249.1| succinate dehydrogenase, cytochrome B560 subunit [Pediculus humanus
corporis]
gi|212516503|gb|EEB18511.1| succinate dehydrogenase, cytochrome B560 subunit [Pediculus humanus
corporis]
Length = 220
Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR----CY 63
RP SPHL IY+ +SI HR TG + LG V F + + + L ++ CY
Sbjct: 35 RPTSPHLTIYKFELPAVLSISHRFTG--IILGGYAVTFATVSLLSSKPMLDVVQRISHCY 92
Query: 64 MDGS-VFEVCL-FLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+F+V L F +T+ H G+R+L+WD L K
Sbjct: 93 PGFFLIFKVGLIFPFTY----HFFNGVRHLVWDNGKSLSLK 129
>gi|260597120|ref|YP_003209691.1| succinate dehydrogenase cytochrome b556 subunit [Cronobacter
turicensis z3032]
gi|260216297|emb|CBA29263.1| Succinate dehydrogenase cytochrome b556 subunit [Cronobacter
turicensis z3032]
Length = 129
Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ + RP++ L R T SI+HR++G + ++ ++++ + + +
Sbjct: 2 IKKVNKQRPVNLDLTTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSLSSQEGFLTA 61
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK-----INIIAS 115
MD + ++ A+ +H++GGIR+++ D + A Q + I ++ S
Sbjct: 62 SDIMDSFFVKFIMWGILTALAYHVVGGIRHMLMDFGYLEETFAAGQRSAKFAFIITVVLS 121
Query: 116 ILTVLIVW 123
IL ++VW
Sbjct: 122 ILAGVLVW 129
>gi|290510449|ref|ZP_06549819.1| LOW QUALITY PROTEIN: succinate dehydrogenase, cytochrome b556
subunit [Klebsiella sp. 1_1_55]
gi|289777165|gb|EFD85163.1| LOW QUALITY PROTEIN: succinate dehydrogenase, cytochrome b556
subunit [Klebsiella sp. 1_1_55]
Length = 147
Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 22 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFLTAAS 81
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV-----SLCLDKKIATQMAKINIIASIL 117
MD + ++ A+ +H++ GIR+L+ D +L K+ A I ++ S+L
Sbjct: 82 IMDSFFVKFIMWGILTALAYHVVVGIRHLMMDFGYLDETLEAGKRSAKISFVITVVLSLL 141
Query: 118 TVLIVW 123
++VW
Sbjct: 142 AGVLVW 147
>gi|138519774|gb|AAI35209.1| LOC496650 protein [Xenopus (Silurana) tropicalis]
Length = 164
Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
NRPLSPH+ IY+ M +SI HR TG + G V +F + S L
Sbjct: 44 NRPLSPHITIYKWSLPMAMSISHRGTGIAMTAG--VSLFGLAALVLPGDFASYLELVKSL 101
Query: 67 SVFEVCL----FLYTWAVIHHMLGGIRYLIWDVSLCLD 100
S+ + F + + +H+ GIR+L WD+ L
Sbjct: 102 SLGPALIYSAKFALAFPLTYHVWNGIRHLTWDLGKGLK 139
>gi|56611131|gb|AAH87773.1| LOC496650 protein [Xenopus (Silurana) tropicalis]
Length = 167
Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
NRPLSPH+ IY+ M +SI HR TG + G V +F + S L
Sbjct: 47 NRPLSPHITIYKWSLPMAMSISHRGTGIAMTAG--VSLFGLAALVLPGDFASYLELVKSL 104
Query: 67 SVFEVCL----FLYTWAVIHHMLGGIRYLIWDVSLCLD 100
S+ + F + + +H+ GIR+L WD+ L
Sbjct: 105 SLGPALIYSAKFALAFPLTYHVWNGIRHLTWDLGKGLK 142
>gi|290474115|ref|YP_003466992.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Xenorhabdus bovienii SS-2004]
gi|289173425|emb|CBJ80202.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Xenorhabdus bovienii SS-2004]
Length = 129
Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 19/132 (14%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ L+ + SI+HRI+G + ++ +++ W + +LSS +
Sbjct: 5 VKKQRPVNLDLRTINQPVSAITSILHRISGVITFIAVGILL-WLLGM-----SLSSQEGF 58
Query: 64 MDGSVFEVCLF--LYTWAVI----HHMLGGIRYLIWDVSLCLDKKIATQMAK------IN 111
+ S F W ++ +H+ GGIR+++ D L++ +AT A I
Sbjct: 59 LQASEIMTGFFAKFILWGILTALAYHICGGIRHVLMDFGF-LEENLATGSASAKVAIVIA 117
Query: 112 IIASILTVLIVW 123
+I SIL +++W
Sbjct: 118 VILSILAGVLLW 129
>gi|206581019|ref|YP_002239654.1| succinate dehydrogenase, cytochrome b556 subunit [Klebsiella
pneumoniae 342]
gi|238893759|ref|YP_002918493.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Klebsiella pneumoniae NTUH-K2044]
gi|262041216|ref|ZP_06014428.1| succinate dehydrogenase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288936496|ref|YP_003440555.1| succinate dehydrogenase, cytochrome b556 subunit [Klebsiella
variicola At-22]
gi|329998780|ref|ZP_08303215.1| succinate dehydrogenase, cytochrome b556 subunit [Klebsiella sp. MS
92-3]
gi|206570077|gb|ACI11853.1| succinate dehydrogenase, cytochrome b556 subunit [Klebsiella
pneumoniae 342]
gi|238546075|dbj|BAH62426.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
gi|259041445|gb|EEW42504.1| succinate dehydrogenase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288891205|gb|ADC59523.1| succinate dehydrogenase, cytochrome b556 subunit [Klebsiella
variicola At-22]
gi|328538566|gb|EGF64671.1| succinate dehydrogenase, cytochrome b556 subunit [Klebsiella sp. MS
92-3]
Length = 134
Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 9 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFLTAAS 68
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV-----SLCLDKKIATQMAKINIIASIL 117
MD + ++ A+ +H++ GIR+L+ D +L K+ A I ++ S+L
Sbjct: 69 IMDSFFVKFIMWGILTALAYHVVVGIRHLMMDFGYLDETLEAGKRSAKISFVITVVLSLL 128
Query: 118 TVLIVW 123
++VW
Sbjct: 129 AGVLVW 134
>gi|71019831|ref|XP_760146.1| hypothetical protein UM03999.1 [Ustilago maydis 521]
gi|46099776|gb|EAK85009.1| hypothetical protein UM03999.1 [Ustilago maydis 521]
Length = 193
Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 28/112 (25%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITG---SVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+ RP SPH IY+ T +SI++RITG SV Y G P+ S
Sbjct: 73 RAQRPSSPHFTIYQPQITWLLSIINRITGTGLSVSYAGYPL--------------FGSAE 118
Query: 62 CYMDGSVFEVCLFLYTW-----------AVIHHMLGGIRYLIWDVSLCLDKK 102
S+ + L W A H L G+R+L WD L K
Sbjct: 119 ALSSASLTDFVATLPAWFKTAVKAPLALAFSFHSLNGLRHLAWDWGFALTIK 170
>gi|195038263|ref|XP_001990579.1| GH19425 [Drosophila grimshawi]
gi|193894775|gb|EDV93641.1| GH19425 [Drosophila grimshawi]
Length = 170
Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT-PVVVFWFFCIANGEHTLSSLR 61
++K R LSPHL IY++ T +SI+ RI+G V+ +G + + FC + + +
Sbjct: 14 NMKLGRELSPHLTIYKIQLTSAMSILLRISGFVLGMGFWAIGLMGLFCNMDINELATKIE 73
Query: 62 CY-MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK--IATQMAKIN---IIAS 115
+ + + F+ +HM+ G R+LI+ +++ L KK AT A + I+A+
Sbjct: 74 EFELSKNFLSFLKFIIILPFAYHMVVGTRHLIFYLNVFLSKKGIYATGYAALAMTLIVAA 133
Query: 116 ILT 118
LT
Sbjct: 134 ALT 136
>gi|66820248|ref|XP_643757.1| succinate dehydrogenase [Dictyostelium discoideum AX4]
gi|74843770|sp|Q8T2T5|C560_DICDI RecName: Full=Succinate dehydrogenase cytochrome b560 subunit,
mitochondrial; Flags: Precursor
gi|60471884|gb|EAL69838.1| succinate dehydrogenase [Dictyostelium discoideum AX4]
Length = 192
Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLG-TPVVVFWFFCIANGEHTLSSLRCYMDG 66
+P SPHL IY+ +SI+HR TG + LG T + F + H + L
Sbjct: 71 QPTSPHLTIYKFPLPAVMSIMHRATGICLALGITGLAGVTLFAPHDAIHYIQLLHTQYPA 130
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWD 94
V+ F + +H G+R++IWD
Sbjct: 131 LVYP-AKFAVALPLTYHFCTGVRHIIWD 157
>gi|300722382|ref|YP_003711668.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Xenorhabdus nematophila ATCC 19061]
gi|297628885|emb|CBJ89468.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Xenorhabdus nematophila ATCC 19061]
Length = 129
Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 19/132 (14%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ L+ + SI+HRI+G + ++ +++ W + +LSS +
Sbjct: 5 VKKQRPVNLDLRTINQPVSAIASILHRISGVITFIAVGILL-WLLGM-----SLSSQEGF 58
Query: 64 MDGSVFEVCLF--LYTWAVI----HHMLGGIRYLIWDVSLCLDKKIATQMAK------IN 111
+ S F W ++ +H+ GGIR+++ D L++ +AT A I
Sbjct: 59 LQSSEIMTGFFAKFILWGILTALAYHICGGIRHVLMDFGF-LEENLATGSASAKVAIVIA 117
Query: 112 IIASILTVLIVW 123
+I SIL +++W
Sbjct: 118 VILSILAGVLLW 129
>gi|326468741|gb|EGD92750.1| succinate dehydrogenase C subunit [Trichophyton tonsurans CBS
112818]
gi|326481350|gb|EGE05360.1| succinate dehydrogenase cytochrome b560 subunit [Trichophyton
equinum CBS 127.97]
Length = 191
Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 19/111 (17%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSV----------VYLGTPVVVFWFFCIANGEHT 56
NRP+SPHL IYR T ++S ++RITG++ YL +P++ + +
Sbjct: 68 NRPISPHLSIYRPQITWYLSSLNRITGAILSGGLYIFASAYLVSPLLGWHLESASLAAAF 127
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQM 107
+ G F + L H G+R+L+WD L K++ Q
Sbjct: 128 AALPIAAKVGMKFTMAL-----PFTFHCFNGVRHLVWD----LGKQLTNQQ 169
>gi|289616414|emb|CBI56941.1| unnamed protein product [Sordaria macrospora]
Length = 180
Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 24/110 (21%)
Query: 7 NRPLSPHLQIYRLIPTMFV-SIVHRITGS----------VVYLGTPVVVFWFFCIANGEH 55
+RP+SPHL+IY T F S RITG+ V YL P+V G H
Sbjct: 55 SRPVSPHLEIYDPKQTWFGGSAWQRITGASFSGALYASAVAYLAAPLV---------GWH 105
Query: 56 TLSS----LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK 101
SS + +V FL W + H + G+R+L +DV + +
Sbjct: 106 LESSSLIAAAAALPVAVKGGLKFLVAWPFVFHAINGVRHLAFDVGVGFGR 155
>gi|219112939|ref|XP_002186053.1| succinate dehydrogenase cytochrome b subunit [Phaeodactylum
tricornutum CCAP 1055/1]
gi|209582903|gb|ACI65523.1| succinate dehydrogenase cytochrome b subunit [Phaeodactylum
tricornutum CCAP 1055/1]
Length = 167
Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 2 SSIKNN-RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG------E 54
S +KN+ RP+SPH+ +Y SI +R+TG V+ G + +G +
Sbjct: 41 SRMKNSGRPVSPHVTVYNFPIAAVASITNRVTGCVLSFGALGLGAAELLGGSGSALYIMQ 100
Query: 55 HTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWD 94
S GS F + ++ +++H GG+R+L+WD
Sbjct: 101 FVGSQGMLISAGSKFAI-----SFPIVYHYGGGLRHLMWD 135
>gi|14861484|gb|AAK73692.1|AF362739_1 succinate dehydrogenase subunit 3 [Gossypium hirsutum]
Length = 201
Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE--HTLSSLRCY 63
N RPLSPHL IY+ + +SI +RI+G V+L T ++ + + G T S+ +
Sbjct: 105 NLRPLSPHLPIYKPQLSATLSITNRISG--VFLTTALLFSYLLSLKMGSICFTYSNFYQF 162
Query: 64 M--DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
+ V + + AV +H+ G+R+L+ D S
Sbjct: 163 FFYSAKLAPVTVSIAALAVSYHLCYGVRHLLADFS 197
>gi|253990452|ref|YP_003041808.1| succinate dehydrogenase cytochrome b-556 subunit [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|211638981|emb|CAR67596.1| succinate dehydrogenase cytochrome b-556 subunit [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253781902|emb|CAQ85066.1| succinate dehydrogenase cytochrome b-556 subunit [Photorhabdus
asymbiotica]
Length = 129
Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ + SI+HR++G + ++ +++ W + +LSS +
Sbjct: 5 VKKQRPVNLDLQTIHFPVSAVASILHRVSGVITFIAVGILL-WLLGM-----SLSSQEGF 58
Query: 64 MDGSVFEVCLF--LYTWAVI----HHMLGGIRYLIWDVS-LCLDKKIATQMAKINI---- 112
+ F W ++ +H+ GGIR+L+ D L + + + AK+ I
Sbjct: 59 QQAADIMTSFFAKFIVWGILTALAYHICGGIRHLLMDFGYLEENLAVGSASAKVAIVLAV 118
Query: 113 IASILTVLIVW 123
I SIL ++VW
Sbjct: 119 ILSILAGVLVW 129
>gi|268572383|ref|XP_002641307.1| C. briggsae CBR-MEV-1 protein [Caenorhabditis briggsae]
gi|1169193|sp|P41955|C560_CAEBR RecName: Full=Succinate dehydrogenase cytochrome b560 subunit,
mitochondrial; Flags: Precursor
gi|450581|gb|AAA20078.1| CDS structure deduced from alignment with C. elegans cyt-1 gene
[Caenorhabditis briggsae]
gi|187039998|emb|CAP21181.1| CBR-MEV-1 protein [Caenorhabditis briggsae AF16]
Length = 184
Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RP++PHL IY+ T +S HRI+G V+ GT +V F + + T + Y+ G
Sbjct: 51 KRPIAPHLTIYQPQLTWMLSGFHRISGCVM-AGTLLVGGLGFAVLPLDFT--TFVEYIRG 107
Query: 67 -----SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK 101
+V V ++ + +I H L GIR+L +D++ +D
Sbjct: 108 WNLPCAVTAVFKYIIAFPIIFHTLNGIRFLGFDLAKGVDN 147
>gi|264679525|ref|YP_003279432.1| succinate dehydrogenase, cytochrome b subunit [Comamonas
testosteroni CNB-2]
gi|299530384|ref|ZP_07043807.1| succinate dehydrogenase, cytochrome b556 subunit [Comamonas
testosteroni S44]
gi|262210038|gb|ACY34136.1| succinate dehydrogenase, cytochrome b subunit [Comamonas
testosteroni CNB-2]
gi|298721609|gb|EFI62543.1| succinate dehydrogenase, cytochrome b556 subunit [Comamonas
testosteroni S44]
Length = 141
Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 14 LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS----VF 69
L YRL VSI+HR++G ++ + P +++ F + E + S G
Sbjct: 21 LPTYRLPLAGIVSILHRVSGLLMAILLPFIIWMFDNSISSEISFDSFTSVFAGPFGWFAK 80
Query: 70 EVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMAKINIIASI-LTVLI 121
VCL L WA +HH G+R+L+ DV+ ++K+ A + + S+ LTV++
Sbjct: 81 LVCLAL-IWAYLHHFCAGVRHLVMDVNHHAVNKQTGKSTAAVVLCISVALTVVL 133
>gi|312375419|gb|EFR22798.1| hypothetical protein AND_14194 [Anopheles darlingi]
Length = 192
Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHR-----ITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
RP SPHL IY T +SI HR +TG + LG +V + H L+ L
Sbjct: 60 KRPQSPHLTIYSFQLTSTLSITHRFTGLALTGYITALGLGALVMPH----DATHYLTMLE 115
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
+ F+ + +H + G+R+L WD+
Sbjct: 116 G-LSAPTLIALKFMLAYPFAYHTVNGVRHLFWDMG 149
>gi|283833993|ref|ZP_06353734.1| succinate dehydrogenase, cytochrome b556 subunit [Citrobacter
youngae ATCC 29220]
gi|291070127|gb|EFE08236.1| succinate dehydrogenase, cytochrome b556 subunit [Citrobacter
youngae ATCC 29220]
Length = 134
Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 9 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFLAASS 68
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKIN----IIASIL 117
M+ E+ ++ A+ +H + GIR+L+ D + + T+ AKI ++ S+L
Sbjct: 69 IMNNFFVELIMWGILIALAYHAVMGIRHLLMDFGYIEETLEAGTRSAKICFVIIVVLSLL 128
Query: 118 TVLIVW 123
++VW
Sbjct: 129 AGVLVW 134
>gi|226951562|ref|ZP_03822026.1| succinate dehydrogenase cytochrome b556 subunit [Acinetobacter sp.
ATCC 27244]
gi|294651219|ref|ZP_06728547.1| succinate dehydrogenasesuccinate dehydrogenase cytochrome b556
subunit [Acinetobacter haemolyticus ATCC 19194]
gi|226837704|gb|EEH70087.1| succinate dehydrogenase cytochrome b556 subunit [Acinetobacter sp.
ATCC 27244]
gi|292822872|gb|EFF81747.1| succinate dehydrogenasesuccinate dehydrogenase cytochrome b556
subunit [Acinetobacter haemolyticus ATCC 19194]
Length = 133
Score = 41.2 bits (95), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 69/132 (52%), Gaps = 7/132 (5%)
Query: 1 MSSIKNNRP----LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP + L + P SI+HR++G +V+L V+++ +
Sbjct: 1 MPAVKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLVAVLLWILDKSLSSPEG 60
Query: 57 LSSLRCYMDGSVF-EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
++ + G++F ++++ ++ H + GI++L+ D+ + + A +++I S
Sbjct: 61 FDYVKNVVFGNIFVRFIVWVFVAGLLFHFIAGIKHLLADLGFAEELQSGRIAATVSLILS 120
Query: 116 ILTVL--IVWII 125
+++++ VWI+
Sbjct: 121 VISIVAAFVWIM 132
>gi|70729104|ref|YP_258840.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
fluorescens Pf-5]
gi|68343403|gb|AAY91009.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
fluorescens Pf-5]
Length = 128
Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 52/96 (54%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++ + RP++ L+ +L T S +HR++G +++LG ++++ E + ++
Sbjct: 3 KAVNSQRPVNLDLRTIKLPITGVTSFLHRVSGIILFLGIGIMLYALSKSLGSEEGYAEVK 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL 97
+ + + + A+++H++ G+R+LI D+ +
Sbjct: 63 ACLTSPLAKFVAWGLLSALLYHLVAGVRHLIMDMGI 98
>gi|225683516|gb|EEH21800.1| succinate dehydrogenase [Paracoccidioides brasiliensis Pb03]
Length = 188
Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIAN--GEHTLSSLRCYM 64
NRP+SPHL IY+ T +S ++RITG V G+ + F+ ++ G H S +
Sbjct: 64 NRPVSPHLSIYQPQVTWVLSSLNRITG-VALAGSLYIFSSFYLVSPLLGWHLESHVIAAA 122
Query: 65 DGSV---FEVCL-FLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
G++ +V L F + H L G R+LIWD+ K
Sbjct: 123 FGALPLAAKVGLKFTAAVPFMFHALNGCRHLIWDLGKQFSNK 164
>gi|119945916|ref|YP_943596.1| succinate dehydrogenase, cytochrome b subunit [Psychromonas
ingrahamii 37]
gi|119864520|gb|ABM03997.1| succinate dehydrogenase subunit C [Psychromonas ingrahamii 37]
Length = 144
Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
++ +RP + L + T SI+HRI+G +V++ + + E +++ Y
Sbjct: 21 VRRDRPKNLDLTTVQFPITATASILHRISGIIVFIALAIFLTLLNQSLTSETDFNNVMGY 80
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK----INIIASILTV 119
+D ++ + +H++ G+R++I D+ + + A AK I I S+LT
Sbjct: 81 IDNFFIGFIIWAALTGLTYHIVFGVRHMIQDLGYWEELESAALSAKVGFIITAILSVLTG 140
Query: 120 LIVW 123
++VW
Sbjct: 141 VLVW 144
>gi|1345639|sp|P48935|C560_CYACA RecName: Full=Succinate dehydrogenase cytochrome b560 subunit;
AltName: Full=Succinate dehydrogenase, subunit III
gi|758171|emb|CAA88765.1| succinate dehydrogenase (cytochrome b560 subunit) [Cyanidium
caldarium]
Length = 132
Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFW-----FFCIANGEHTLSSL 60
NRPLSP++ IY T SI HR++G +YL + V + FC + +
Sbjct: 4 KNRPLSPYVTIYSSQWTSISSIFHRLSG--LYLVFFLFVLFCSIKFLFCFSTFWFVYKFV 61
Query: 61 R-CYMD-GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
+ C+ S F V + +++ +H G+R+L+WD + ++ T K
Sbjct: 62 KTCFFFILSFFIVFIVFSMYSLFYHFFIGLRHLVWDEVILMEDNFVTMSTK 112
>gi|258571015|ref|XP_002544311.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237904581|gb|EEP78982.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 204
Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPV-VVFWFFCIANGEHTLSSLRCYMD 65
NRP++PHL IY+ + ++S ++RITG V G + + A G H S
Sbjct: 81 NRPVAPHLSIYKPQISWYLSALNRITGCTVSGGLYLFATAYLVAPAVGWHLESMSLAAAF 140
Query: 66 GSVFEVCLFLYTWAV----IHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
G++ F + V H + G+R+L+WD +M ++IA+ TV+
Sbjct: 141 GALPLAAKFAIKFGVAMPFTFHCMNGVRHLVWD--------FGKKMTNKDVIATGWTVV 191
>gi|221065942|ref|ZP_03542047.1| succinate dehydrogenase, cytochrome b556 subunit [Comamonas
testosteroni KF-1]
gi|220710965|gb|EED66333.1| succinate dehydrogenase, cytochrome b556 subunit [Comamonas
testosteroni KF-1]
Length = 141
Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 14 LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS----VF 69
L YRL VSI+HR++G ++ + P +++ F + E + S G
Sbjct: 21 LPTYRLPLAGIVSILHRVSGLLMAILLPFIIWMFDHSISSEISFDSFTSVFAGPFGWFAK 80
Query: 70 EVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMAKINIIASI-LTVLI 121
VCL L WA +HH G+R+L+ DV+ ++K+ A + + S+ LTV++
Sbjct: 81 LVCLAL-IWAYLHHFCAGVRHLVMDVNHHAVNKQTGKSTAAVVLCISVALTVVL 133
>gi|188576491|ref|YP_001913420.1| succinate dehydrogenase, cytochrome b556 subunit [Xanthomonas
oryzae pv. oryzae PXO99A]
gi|188520943|gb|ACD58888.1| succinate dehydrogenase, cytochrome b556 subunit [Xanthomonas
oryzae pv. oryzae PXO99A]
Length = 118
Score = 40.8 bits (94), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%)
Query: 16 IYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFL 75
+YR M SI++R TG V+ +G V+ + G + R + +V LF
Sbjct: 1 MYRWQIQMVTSILNRATGIVLTVGALVIAAALLTLMLGPDHWNCFRDHAASWYGQVFLFG 60
Query: 76 YTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+TW+ H+ GG+R+++ D + M ++++ S + VW
Sbjct: 61 WTWSFAFHLFGGLRHMLQDFGQGYAVRSFVGMGWLSVLLSFVLTGAVW 108
>gi|119476702|ref|ZP_01617012.1| succinate dehydrogenase (C subunit) [marine gamma proteobacterium
HTCC2143]
gi|119449958|gb|EAW31194.1| succinate dehydrogenase (C subunit) [marine gamma proteobacterium
HTCC2143]
Length = 137
Score = 40.8 bits (94), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++ + RP++ L + SI HRI+G ++ GT V+++ E +SLR
Sbjct: 12 TVADKRPVNLDLGAMKWPLPAITSITHRISGVILVAGTAVLLWLLDESLTSEEAFNSLRS 71
Query: 63 YMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
+ S +F++ ++ A+I+H + G+++L D+
Sbjct: 72 VLASSLIFKLIVWGVMSALIYHSVAGVKHLCMDLG 106
>gi|295666820|ref|XP_002793960.1| succinate dehydrogenase cytochrome B subunit [Paracoccidioides
brasiliensis Pb01]
gi|226277613|gb|EEH33179.1| succinate dehydrogenase cytochrome B subunit [Paracoccidioides
brasiliensis Pb01]
Length = 188
Score = 40.4 bits (93), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIAN--GEHTLSSLRCYM 64
NRP+SPHL IY+ T +S ++RITG + G+ + F+ ++ G H S +
Sbjct: 64 NRPVSPHLSIYQPQVTWVLSSLNRITG-LALAGSLYIFSSFYLVSPLLGWHLESPVIAAA 122
Query: 65 DGSV---FEVCL-FLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
G++ +V L F + H L G R+LIWD+ K
Sbjct: 123 FGALPLAAKVGLKFTAALPFMFHALNGCRHLIWDLGKQFSNK 164
>gi|307188808|gb|EFN73391.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
[Camponotus floridanus]
Length = 152
Score = 40.4 bits (93), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 22/100 (22%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL---SSLRCY 63
RP+SPHL IY + T +S+ HR TG ++ + + G TL + C+
Sbjct: 32 KRPMSPHLTIYEIQLTSVLSVTHRTTG---------IMLASYAMFLGLGTLLIPGGIPCF 82
Query: 64 MDGSVFEVCL---------FLYTWAVIHHMLGGIRYLIWD 94
++ +V +CL L +H G+R+L WD
Sbjct: 83 IE-TVDNLCLPLPVLYIGKLLLALPATYHTFNGMRHLAWD 121
>gi|229589333|ref|YP_002871452.1| succinate dehydrogenase cytochrome b556 subunit [Pseudomonas
fluorescens SBW25]
gi|229361199|emb|CAY48063.1| succinate dehydrogenase cytochrome b556 subunit [Pseudomonas
fluorescens SBW25]
Length = 124
Score = 40.4 bits (93), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L+ +L T S +HR++G +++LG ++++ E + ++
Sbjct: 1 MNSQRPVNLDLRTIKLPITGVTSFLHRVSGIILFLGLGIMLYALSKSLGSEEGYAEVKAC 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
+ + + + ++++H++ G+R+LI D+ + + +KI I S++ +++
Sbjct: 61 LTSPLAKFVAWGLLSSLLYHLVAGVRHLIMDMGIGETLEGGRLGSKIIIAISVVLIVLAG 120
Query: 122 VWI 124
VWI
Sbjct: 121 VWI 123
>gi|226941338|ref|YP_002796412.1| SdhC [Laribacter hongkongensis HLHK9]
gi|226716265|gb|ACO75403.1| SdhC [Laribacter hongkongensis HLHK9]
Length = 124
Score = 40.4 bits (93), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 4 IKNNRPLSPHLQIYRL-IPTMF-VSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++ RP HL + ++ +P M VSI+HRI+G ++L P++++ + E + R
Sbjct: 1 MQKKRP--KHLDLGKISLPIMAKVSILHRISGVALFLALPLLIYLLQGSLSSEADFEAYR 58
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI-LTVL 120
+ + ++ L WA +HH GIR+L++D+ + A AK ++ SI LTV+
Sbjct: 59 AVVAFPLMKLILLGLLWAFLHHFCAGIRFLMFDMHKGQSLEAARASAKAVLVVSIALTVV 118
Query: 121 IVWII 125
I I+
Sbjct: 119 IGGIL 123
>gi|330804873|ref|XP_003290414.1| hypothetical protein DICPUDRAFT_98679 [Dictyostelium purpureum]
gi|325079465|gb|EGC33064.1| hypothetical protein DICPUDRAFT_98679 [Dictyostelium purpureum]
Length = 193
Score = 40.4 bits (93), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 15/109 (13%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
+P SPH+ IYR +SI+HR+TG + LG F + + Y+D
Sbjct: 71 KQPTSPHVLIYRFPLPAVMSILHRVTGVFLGLG------LFGVCSTALFAPQDVTVYIDM 124
Query: 67 SVFEVCLFLY------TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
L +Y + + +H GIR+L WD + K I T +A+
Sbjct: 125 LKTNYPLLVYPAKFCIAFPLAYHTSTGIRHLFWDET---QKGITTPLAE 170
>gi|291616724|ref|YP_003519466.1| SdhC [Pantoea ananatis LMG 20103]
gi|291151754|gb|ADD76338.1| SdhC [Pantoea ananatis LMG 20103]
gi|327393149|dbj|BAK10571.1| succinate dehydrogenase cytochrome b556 subunit SdhC [Pantoea
ananatis AJ13355]
Length = 140
Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ L R T SI+HR++G + + ++++ +
Sbjct: 15 TVKKQRPVNLDLSTIRFPVTAISSILHRVSGVITLVALGILLWLLGLSLSSPEGFQHAAS 74
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV-----SLCLDKKIATQMAKINIIASIL 117
M+G + ++ A+ +H +GGIR+++ D +L K+ A I ++ SIL
Sbjct: 75 VMNGFFAKFIMWGILTALAYHAVGGIRHMLMDFGYLAETLEAGKRSAQVTFGITVVLSIL 134
Query: 118 TVLIVW 123
++VW
Sbjct: 135 AGVLVW 140
>gi|296414660|ref|XP_002837016.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295632864|emb|CAZ81207.1| unnamed protein product [Tuber melanosporum]
Length = 182
Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVF---WFFCIANGEHTLSSLRCYM 64
RP+SPHL IY+ T +S +RITG++ L T F + G H S
Sbjct: 60 RPISPHLTIYQPQITSLMSGANRITGAI--LSTSAYAFAIGYLVAPTLGLHLESQTIAEA 117
Query: 65 DGSVFEVCLF----LYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
G++ + + +H G+R+LIWD LD K
Sbjct: 118 FGAMPDATKIGIKGVLALPFTYHAWNGVRHLIWDTGKLLDIK 159
>gi|327300971|ref|XP_003235178.1| succinate dehydrogenase C subunit [Trichophyton rubrum CBS 118892]
gi|326462530|gb|EGD87983.1| succinate dehydrogenase C subunit [Trichophyton rubrum CBS 118892]
Length = 191
Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 21/112 (18%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSV----------VYLGTPVVVFWFFCIANGEHT 56
NRP+SPHL IYR T ++S ++RITG++ YL +P++ W E
Sbjct: 68 NRPVSPHLSIYRPQITWYLSSLNRITGAILSGGLYIFASAYLVSPLLG-WHL-----ESA 121
Query: 57 LSSLRCYMDGSVFEVCL-FLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQM 107
+ +V + F H G+R+L+WD L K++ Q
Sbjct: 122 SLAAAFAALPIAAKVAMKFTMALPFTFHCFNGVRHLVWD----LGKQLTNQQ 169
>gi|302505419|ref|XP_003014416.1| hypothetical protein ARB_06978 [Arthroderma benhamiae CBS 112371]
gi|291178237|gb|EFE34027.1| hypothetical protein ARB_06978 [Arthroderma benhamiae CBS 112371]
Length = 197
Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 21/112 (18%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVV----------YLGTPVVVFWFFCIANGEHT 56
NRP+SPHL IYR T ++S ++RITG+++ YL +P++ W E
Sbjct: 74 NRPVSPHLSIYRPQITWYLSSLNRITGAILSGGLYIFASAYLVSPLLG-WHL-----ESA 127
Query: 57 LSSLRCYMDGSVFEVCL-FLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQM 107
+ +V + F H G+R+L+WD L K++ Q
Sbjct: 128 SLAAAFAALPIAAKVAMKFTMALPFTFHCFNGVRHLVWD----LGKQLTNQQ 175
>gi|217039529|gb|ACJ76893.1| mitochondrial succinate dehydrogenase cytochrome b560 subunit C
[Alternaria alternata]
Length = 177
Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFCI 50
++ + NRP+SPHL IY+ T + S ++RITG + YL P W
Sbjct: 47 LAKQRVNRPVSPHLAIYKPQITWYASSLNRITGITLSGSLYLFGIAYLIAPYTG-WHLET 105
Query: 51 ANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ T+++ + + Y + H G+R+L WDV + +
Sbjct: 106 QSMVATVAAWPAAVKAGLKA----FYAFPFFFHSFNGLRHLAWDVGIGFKNQ 153
>gi|17554318|ref|NP_499283.1| abnormal MEthyl Viologen sensitivity family member (mev-1)
[Caenorhabditis elegans]
gi|1169194|sp|P41956|C560_CAEEL RecName: Full=Succinate dehydrogenase cytochrome b560 subunit,
mitochondrial; Flags: Precursor
gi|433177|gb|AAA20081.1| CYT-1 [Caenorhabditis elegans]
gi|3879510|emb|CAA82572.1| C. elegans protein T07C4.7, confirmed by transcript evidence
[Caenorhabditis elegans]
Length = 182
Score = 40.4 bits (93), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 6/123 (4%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT--LSSLRCY 63
NRP++PHL +Y+ T +S HRI+G V+ GT +V F + + T + +R +
Sbjct: 50 KNRPIAPHLTVYQPQLTWMLSGFHRISGCVM-AGTLLVGGIGFAVLPFDFTAFVDFIRSW 108
Query: 64 -MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ +V V ++ + +I H L GIR+L +D++ ++ Q+ K + S L+ ++
Sbjct: 109 NLPCAVTAVFKYIIAFPIIFHTLNGIRFLGFDLAKGVNN--VGQIYKSGYLVSGLSAILA 166
Query: 123 WII 125
I
Sbjct: 167 LAI 169
>gi|197284462|ref|YP_002150334.1| succinate dehydrogenase cytochrome b-556 subunit [Proteus mirabilis
HI4320]
gi|227356640|ref|ZP_03841026.1| succinate dehydrogenase cytochrome b-556 subunit [Proteus mirabilis
ATCC 29906]
gi|194681949|emb|CAR41360.1| succinate dehydrogenase cytochrome b-556 subunit [Proteus mirabilis
HI4320]
gi|227163148|gb|EEI48079.1| succinate dehydrogenase cytochrome b-556 subunit [Proteus mirabilis
ATCC 29906]
Length = 125
Score = 40.4 bits (93), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ + SI+HR++G ++ + ++++ +
Sbjct: 1 MKKQRPVNLDLQTIQFPLPAIASILHRVSGVIMLVAVGILLWLLGTSLSSPEGFQQAADI 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV-----SLCLDKKIATQMAKINIIASILT 118
M G + L+ A+ +H+ GGIR+++ D +L + ++ A I +I SIL
Sbjct: 61 MTGFFAKFILWGILTALAYHICGGIRHMLMDFGFIDETLVVGRRSAAISMIITVILSILA 120
Query: 119 VLIVW 123
++VW
Sbjct: 121 GVLVW 125
>gi|226330952|ref|ZP_03806470.1| hypothetical protein PROPEN_04875 [Proteus penneri ATCC 35198]
gi|225201747|gb|EEG84101.1| hypothetical protein PROPEN_04875 [Proteus penneri ATCC 35198]
Length = 130
Score = 40.4 bits (93), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
K RP++ LQ + SI+HR++G ++ + ++++ + M
Sbjct: 7 KKQRPVNLDLQTIQFPLPAIASILHRVSGVIMLVAVGILLWLLGTSLSSPEGFQQAAEIM 66
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV-----SLCLDKKIATQMAKINIIASILTV 119
G + L+ A+ +H+ GGIR+++ D +L + + A I +I SIL
Sbjct: 67 TGFFAKFILWGILTALAYHICGGIRHMLMDFGFIDETLIVGRNSAAASMVITVILSILAG 126
Query: 120 LIVW 123
++VW
Sbjct: 127 VLVW 130
>gi|225023987|ref|ZP_03713179.1| hypothetical protein EIKCOROL_00854 [Eikenella corrodens ATCC
23834]
gi|224943012|gb|EEG24221.1| hypothetical protein EIKCOROL_00854 [Eikenella corrodens ATCC
23834]
Length = 125
Score = 40.4 bits (93), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
NRP+ + RL VSI+HRI+G ++++ P++++ + S R ++
Sbjct: 4 TNRPIFLDIISIRLPIPGIVSILHRISGVLLFISLPLLLWLLAGTLDNAAAFESYRAFVA 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
+ ++ L WA +HH GIR+L D L A AK
Sbjct: 64 HPLVKIGLIGLLWAYLHHFFAGIRFLFLDAHKGLALNTARTTAK 107
>gi|145588943|ref|YP_001155540.1| succinate dehydrogenase, cytochrome b subunit [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145047349|gb|ABP33976.1| succinate dehydrogenase subunit C [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 139
Score = 40.4 bits (93), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 19/120 (15%)
Query: 1 MSSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
++K +RP+ ++ + YRL VSI+HRI+G+V++L P +++ +
Sbjct: 5 QQNVKKDRPVYRNIGLAQLVKYRLPWAGKVSILHRISGAVLFLMLPFLLYLL------DQ 58
Query: 56 TLSSLRCYMDGSVFE-------VCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+L+S Y VCL L W +HH GIRYL+ D+ + ++K A + A
Sbjct: 59 SLASEVSYQKFQAITGHVLVKIVCLGL-IWCFLHHFCAGIRYLLLDLEIGVEKSEANRSA 117
>gi|254514197|ref|ZP_05126258.1| succinate dehydrogenase, cytochrome b556 subunit [gamma
proteobacterium NOR5-3]
gi|219676440|gb|EED32805.1| succinate dehydrogenase, cytochrome b556 subunit [gamma
proteobacterium NOR5-3]
Length = 124
Score = 40.4 bits (93), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 56/107 (52%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K+NRP++ + RL T + SI+HR++G ++ + + ++++ +SL
Sbjct: 1 MKDNRPVNLDIGTIRLPITAYASILHRVSGVIMVVASFLLLWALEQSLASPEGFASLGEL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKI 110
+ + + ++ A+I+H L G+++LI D + + T A++
Sbjct: 61 LANPLVKFVVWGIATALIYHSLAGVKHLIMDFGIGETMEGGTLGARL 107
>gi|88703466|ref|ZP_01101182.1| Succinate dehydrogenase cytochrome b-556 subunit [Congregibacter
litoralis KT71]
gi|88702180|gb|EAQ99283.1| Succinate dehydrogenase cytochrome b-556 subunit [Congregibacter
litoralis KT71]
Length = 124
Score = 40.0 bits (92), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K+NRP++ + RL T + SI+HR++G ++ + + ++++ G + + L
Sbjct: 1 MKDNRPVNLDIGTIRLPITAYASILHRVSGVIMVVASFLLLWALDLSLAGPESYARLGEL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWD--VSLCLDKKI--ATQMAKINIIASILTV 119
+ + ++ A+++H G+++LI D V +D + A + + I+++L
Sbjct: 61 FGSPLLKFVIWGIATALLYHSFAGVKHLIMDFGVGESMDGGVLGARLVFALTAISAVLIG 120
Query: 120 LIVW 123
+++W
Sbjct: 121 VVLW 124
>gi|90580050|ref|ZP_01235858.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio angustum S14]
gi|90438935|gb|EAS64118.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio angustum S14]
Length = 133
Score = 40.0 bits (92), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ R T SI+HR++G + ++ ++++ + +S
Sbjct: 10 VKKPRPVNLDLQTIRFPLTAIASILHRVSGVITFVSIAILLWLLNLSLSSPEGFTSAASI 69
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
D + L+ A+ +H++ GIR+L+ D L +++ T +A I +I+ VL V+
Sbjct: 70 TDSFFVKFILWGVLTALFYHIVLGIRHLLMD--LGYFEEMDTGIASTKISFAIVAVLAVF 127
>gi|3273343|dbj|BAA31213.1| fumarate reductase cytochrome b large subunit [Rhodoferax
fermentans]
Length = 147
Score = 40.0 bits (92), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 12 PHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEV 71
P L YR S +HR++G++++ P V++ F + E + + + + + +
Sbjct: 21 PSLITYRWPLASLASGMHRVSGAIMFFLMPFVIWMFDASISSEVSFARFKAAFNIGMLGI 80
Query: 72 CLFLYT-------WAVIHHMLGGIRYLIWDV-SLCLDKKIATQMAKI 110
FL+ WA++HH + GIR+L D + K Q A +
Sbjct: 81 PGFLWKLVALGLIWAMLHHFIAGIRHLWMDTHHHHVSKDFGRQTAAV 127
>gi|329897269|ref|ZP_08272007.1| Succinate dehydrogenase cytochrome b-556 subunit [gamma
proteobacterium IMCC3088]
gi|328921265|gb|EGG28661.1| Succinate dehydrogenase cytochrome b-556 subunit [gamma
proteobacterium IMCC3088]
Length = 124
Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 50/93 (53%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K+ RP++ + +L T + SI+HRI+G +++ V+++ + +S+
Sbjct: 1 MKDTRPVNLDIATIKLPITAYASILHRISGVFLFVAIGVMIYALDLSLSSAEGFASVGAA 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
+D ++ ++ +I+H + G+++LI D+
Sbjct: 61 LDSLFAKLVVWAVLSGLIYHSVAGVKHLIMDMG 93
>gi|134293105|ref|YP_001116841.1| succinate dehydrogenase subunit C [Burkholderia vietnamiensis G4]
gi|134136262|gb|ABO57376.1| succinate dehydrogenase subunit C [Burkholderia vietnamiensis G4]
Length = 138
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YR+ +SI+HRI+G++++L P ++F F E + + ++ V ++ +
Sbjct: 24 YRMPAAAILSILHRISGALLFLFLPFLLFLFDQSLTSELSFEVFKSFLSNIVVKLIVLAL 83
Query: 77 TWAVIHHMLGGIRYLIWDVS 96
+WA +HH GIR+L+ DV+
Sbjct: 84 SWAFLHHFCAGIRHLLMDVN 103
>gi|153838604|ref|ZP_01991271.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio
parahaemolyticus AQ3810]
gi|149748022|gb|EDM58881.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio
parahaemolyticus AQ3810]
Length = 126
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 4 RKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSISLSSHMGFMEAADIV 63
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA----SILTVL 120
DG + L+ A+ +H+ GGIR+L+ D+ + AK+ A S+L +
Sbjct: 64 DGFFVKFILWGILTALAYHIAGGIRHLLMDLGHFEELDSGAMSAKVAFGATAVLSLLAGI 123
Query: 121 IVW 123
+VW
Sbjct: 124 LVW 126
>gi|157961608|ref|YP_001501642.1| succinate dehydrogenase cytochrome b556 subunit [Shewanella
pealeana ATCC 700345]
gi|157846608|gb|ABV87107.1| Succinate dehydrogenase cytochrome b556 subunit [Shewanella
pealeana ATCC 700345]
Length = 124
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 53/114 (46%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP+ LQ R T SI+HR++G ++ ++++ + + ++
Sbjct: 1 MKKQRPVHLDLQTIRFPATAIASILHRVSGVIMLFAVGILIWLLNESLASADSFAGVQSL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASIL 117
D + + ++ A+ +H++ GIR+L+ D + AK+ I S++
Sbjct: 61 FDSFIVKFIVWGILTALGYHLIVGIRHLVMDAGYWEELSSGITSAKVAIALSVV 114
>gi|28897617|ref|NP_797222.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio parahaemolyticus RIMD 2210633]
gi|260878228|ref|ZP_05890583.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio
parahaemolyticus AN-5034]
gi|260895665|ref|ZP_05904161.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio
parahaemolyticus Peru-466]
gi|260901293|ref|ZP_05909688.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio
parahaemolyticus AQ4037]
gi|28805829|dbj|BAC59106.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio
parahaemolyticus RIMD 2210633]
gi|308088169|gb|EFO37864.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio
parahaemolyticus Peru-466]
gi|308090145|gb|EFO39840.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio
parahaemolyticus AN-5034]
gi|308109821|gb|EFO47361.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio
parahaemolyticus AQ4037]
Length = 130
Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 8 RKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSISLSSHMGFMEAADIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA----SILTVL 120
DG + L+ A+ +H+ GGIR+L+ D+ + AK+ A S+L +
Sbjct: 68 DGFFVKFILWGILTALAYHIAGGIRHLLMDLGHFEELDSGAMSAKVAFGATAVLSLLAGI 127
Query: 121 IVW 123
+VW
Sbjct: 128 LVW 130
>gi|323498611|ref|ZP_08103603.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio sinaloensis DSM 21326]
gi|323316309|gb|EGA69328.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio sinaloensis DSM 21326]
Length = 130
Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HR++G + ++ ++++ + + +
Sbjct: 8 RKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSISLSSPVGYAQAVDIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA----SILTVL 120
DG + L+ A+ +H+ GGIR+L+ D+ + + AK+ A S+L +
Sbjct: 68 DGFFVKFILWGILTALAYHIAGGIRHLLMDLGHFEELESGAMSAKVAFAATAVLSLLAGI 127
Query: 121 IVW 123
+VW
Sbjct: 128 MVW 130
>gi|157120010|ref|XP_001653486.1| succinate dehydrogenase [Aedes aegypti]
gi|94468558|gb|ABF18128.1| mitochondrial succinate dehydrogenase cytochrome b subunit [Aedes
aegypti]
gi|108875100|gb|EAT39325.1| succinate dehydrogenase [Aedes aegypti]
Length = 171
Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG-SVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RP SPHL IY T +SI HR+TG ++ T + + + H L+ L +
Sbjct: 53 QRPQSPHLTIYAPQLTSMLSITHRMTGMALAGYATMMGLGALALPHDATHYLTMLEG-LS 111
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
F + H + G+R+L WD+
Sbjct: 112 APTLMALKFTLAYPFAFHSVNGVRHLFWDMG 142
>gi|169780850|ref|XP_001824889.1| cytochrome B-560 subunit of succinate dehydrogenase [Aspergillus
oryzae RIB40]
gi|238504946|ref|XP_002383702.1| succinate dehydrogenase cytochrome b560 subunit [Aspergillus flavus
NRRL3357]
gi|83773629|dbj|BAE63756.1| unnamed protein product [Aspergillus oryzae]
gi|220689816|gb|EED46166.1| succinate dehydrogenase cytochrome b560 subunit [Aspergillus flavus
NRRL3357]
Length = 188
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 23/110 (20%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFCIANGEHT 56
NRP+SPHL IYR T S HRITG + YL +P ++ W A+
Sbjct: 65 NRPVSPHLSIYRPQITWIGSSFHRITGFALSGSLYLYATAYLASP-LLGWHLESASVAAA 123
Query: 57 LSSL----RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
++L + + G F F Y H G+R+L+WD+ + +
Sbjct: 124 FAALPIVAKVLLKG--FMALPFTY------HCFNGVRHLVWDLGRGITNQ 165
>gi|148652073|ref|YP_001279166.1| succinate dehydrogenase, cytochrome b556 subunit [Psychrobacter sp.
PRwf-1]
gi|148571157|gb|ABQ93216.1| succinate dehydrogenase subunit C [Psychrobacter sp. PRwf-1]
Length = 125
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 4 IKNNRPLS-PHLQIYRL--IPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+K+NRP++ P Q+ + PT SI+HRI+G +++L PV++ + + ++
Sbjct: 1 MKSNRPINLPLSQVISVNSSPTARASILHRISGIILFLLIPVML---WLLQTSLYSPQDF 57
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN-IIASILTV 119
D + +++ A +H + GI++L D+ + + + ++ +IA+IL V
Sbjct: 58 LAVFDNVLVRFVAWIFVAATAYHFVMGIKHLFADMGFNEELQSGRTASIVSFVIAAILIV 117
Query: 120 L-IVWII 125
L VW++
Sbjct: 118 LSFVWVM 124
>gi|194743916|ref|XP_001954444.1| GF18264 [Drosophila ananassae]
gi|190627481|gb|EDV43005.1| GF18264 [Drosophila ananassae]
Length = 281
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVV-----YLGTPVVVFWFFCIANGEHTLSSLR 61
R LSPHL IY+L T +SI RI+G V+ LG + C N E L+ ++
Sbjct: 104 GRELSPHLSIYKLQLTSGLSICLRISGFVLGVFVWALG----ISGLICQGNMEEFLTKVQ 159
Query: 62 -CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL 97
C D ++ + + +HM+ G R+LIW ++L
Sbjct: 160 DCDCD-TLRTLTKVMVAIPFAYHMVAGTRHLIWYLNL 195
>gi|312796841|ref|YP_004029763.1| succinate dehydrogenase cytochrome b556 subunit [Burkholderia
rhizoxinica HKI 454]
gi|312168616|emb|CBW75619.1| Succinate dehydrogenase cytochrome b556 subunit (EC 1.3.99.1)
[Burkholderia rhizoxinica HKI 454]
Length = 185
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
++K RP ++ I YRL VSI+HR++G++++L P ++ E +
Sbjct: 52 EAVKKPRPEYRNISIGQILRYRLPLAGRVSILHRVSGALLFLLLPFSLYLLEQSLTSELS 111
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQ 106
+SL+ + + ++ + + +WA + H G+R+L+ D + K+ Q
Sbjct: 112 FASLKAFFSYPLVKLIVLVLSWAYLFHFCAGLRHLLLDTHRAVTKQGGKQ 161
>gi|110225706|ref|YP_665711.1| succinate:cytochrome c oxidoreductase subunit 3 [Mesostigma
viride]
gi|17222577|gb|AAL36750.1|AF353999_30 succinate:cytochrome c oxidoreductase subunit 3 [Mesostigma
viride]
Length = 131
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY---- 63
RPLSPH+ +Y+ S+ HRI+GSV+ + + F+ F I H S +
Sbjct: 7 RPLSPHVSVYQPQWNSMFSLFHRISGSVLVIS--LFTFFLFSIIYSFHATRSYELFSFFL 64
Query: 64 --MDGSVFEVCLFLYTWAVIHHMLGGIRYLI 92
D +F +A+ +H++ GI +++
Sbjct: 65 TLEDSKLFSFVELTILFALSYHIINGIHHIM 95
>gi|328473399|gb|EGF44247.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio parahaemolyticus 10329]
Length = 130
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 8 RKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSISLSSPMGFMEAADIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA----SILTVL 120
DG + L+ A+ +H+ GGIR+L+ D+ + AK+ A S+L +
Sbjct: 68 DGFFVKFILWGILTALAYHIAGGIRHLLMDLGHFEELDSGAMSAKVAFGATAVLSLLAGI 127
Query: 121 IVW 123
+VW
Sbjct: 128 LVW 130
>gi|183598172|ref|ZP_02959665.1| hypothetical protein PROSTU_01551 [Providencia stuartii ATCC 25827]
gi|188020339|gb|EDU58379.1| hypothetical protein PROSTU_01551 [Providencia stuartii ATCC 25827]
Length = 129
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ T SI+HR++G + ++ ++++ + +
Sbjct: 5 VKKQRPVNLDLQTIHFPITAISSILHRVSGVITFIAVGILLWLLGTSLSSPEGFQYVSEI 64
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK------INIIASIL 117
M G + L+ A+ +H+ GGIR+++ D +D+ +A + I ++ +IL
Sbjct: 65 MTGFFAKFILWGILTALAYHICGGIRHMLMDFG-WVDETLAAGNSSAKITFVITVVLAIL 123
Query: 118 TVLIVW 123
++VW
Sbjct: 124 AGILVW 129
>gi|121611268|ref|YP_999075.1| succinate dehydrogenase, cytochrome b subunit [Verminephrobacter
eiseniae EF01-2]
gi|121555908|gb|ABM60057.1| succinate dehydrogenase subunit C [Verminephrobacter eiseniae
EF01-2]
Length = 144
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 1 MSSIKNNRP------LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE 54
M+ RP L L+ YRL +VSI+HR++G ++L P +V+ F + E
Sbjct: 1 MTKTAPERPEFRNLHLLQDLRTYRLPAAGWVSILHRVSGLAMFLLLPFIVWMFDTSLSSE 60
Query: 55 HTLSSLRCYMD-------GSVFEVCLFLYTWAVIHHMLGGIRYLIWDV 95
+ + G F++ W+ +HH G+R+L D+
Sbjct: 61 ISFARFTAIFKAGAGVVPGWCFKLLALALIWSFLHHFCAGLRHLWLDI 108
>gi|302667796|ref|XP_003025478.1| hypothetical protein TRV_00347 [Trichophyton verrucosum HKI 0517]
gi|291189589|gb|EFE44867.1| hypothetical protein TRV_00347 [Trichophyton verrucosum HKI 0517]
Length = 191
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 21/112 (18%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSV----------VYLGTPVVVFWFFCIANGEHT 56
NRP+SPHL IYR T ++S ++RITG++ YL +P++ W E
Sbjct: 68 NRPVSPHLSIYRPQITWYLSSLNRITGAILSGGLYIFASAYLVSPLLG-WHL-----ESA 121
Query: 57 LSSLRCYMDGSVFEVCL-FLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQM 107
+ +V + F H G+R+L+WD L K++ Q
Sbjct: 122 SLAAAFAALPIAAKVVMKFTMALPFTFHCFNGVRHLVWD----LGKQLTNQQ 169
>gi|261252260|ref|ZP_05944833.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio orientalis
CIP 102891]
gi|260935651|gb|EEX91640.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio orientalis
CIP 102891]
Length = 130
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HR++G + ++ ++++ + + +
Sbjct: 8 RKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSISLSSPVGYAQAVDIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA----SILTVL 120
DG L+ A+ +H++GGIR+L+ D+ + + AK+ A S+L +
Sbjct: 68 DGFFVTFILWGILTALAYHIVGGIRHLLMDLGHFEELESGAMSAKVAFAATAVLSLLAGI 127
Query: 121 IVW 123
+VW
Sbjct: 128 MVW 130
>gi|292490834|ref|YP_003526273.1| succinate dehydrogenase, cytochrome b556 subunit [Nitrosococcus
halophilus Nc4]
gi|291579429|gb|ADE13886.1| succinate dehydrogenase, cytochrome b556 subunit [Nitrosococcus
halophilus Nc4]
Length = 125
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
++RP +L + R VS +HRI+G ++ L PV+V+ + + +
Sbjct: 3 NHHRPTFLNLALIRFPANAIVSALHRISGVILSLLVPVLVYLLDLSLQDSEGFAQVIGFF 62
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKI-NIIASILTVLIVW 123
+ ++ + WA++HH+ GIR+L++D+ + + + A+I N+ A ++T+LI
Sbjct: 63 NSLGVKLVGMVVLWALLHHIFAGIRFLLFDIHVGVKDYRPSWSARIANVSALVVTLLIAG 122
Query: 124 II 125
++
Sbjct: 123 VL 124
>gi|210076240|ref|XP_504562.2| YALI0E29667p [Yarrowia lipolytica]
gi|199426970|emb|CAG80166.2| YALI0E29667p [Yarrowia lipolytica]
Length = 171
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 21/108 (19%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI-ANGE------------ 54
RP SPHL IY+ T ++S +HR+TG V LG ++ C A G
Sbjct: 49 RPTSPHLDIYQPQLTWYLSGLHRVTG--VALGG--ALYALLCAYAAGPALGIHIDSTTLA 104
Query: 55 HTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
HT +++ + + F +T+ H G+R+L+WD + L K
Sbjct: 105 HTFAAVPLVAKLPLKALVAFPFTF----HAFNGVRHLVWDFTKELTVK 148
>gi|262371930|ref|ZP_06065209.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
junii SH205]
gi|262311955|gb|EEY93040.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
junii SH205]
Length = 133
Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 19/138 (13%)
Query: 1 MSSIKNNRP----LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP + L + P SI+HR++G +V+L V+ W + +
Sbjct: 1 MPAVKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFL-LVAVLLWIL-----DKS 54
Query: 57 LSSLRC--YMDGSVF-----EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
LSS Y+ VF ++++ +I H + GI++L+ D+ + + A
Sbjct: 55 LSSPEGFDYVKNVVFGNILVRFIVWVFVAGLIFHFIAGIKHLLADLGFAEELQSGRIAAT 114
Query: 110 INIIASILTVL--IVWII 125
+++I S++ ++ VWI+
Sbjct: 115 VSLILSVIGIVAAFVWIM 132
>gi|314908366|gb|ADT62130.1| succinate dehydrogenase subunit 3 [Isoetes engelmannii]
Length = 98
Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVV-FWFFCIANGEHTLSSLRC 62
+K NRPLSPHL IY+ T SI HRI+G+ +L V+ F+ I + T
Sbjct: 1 MKINRPLSPHLTIYKPQLTSTFSIFHRISGA--FLAAKVLFSLLFWKIGDLSLTFYYSYS 58
Query: 63 YMDGSVFEVCLFLYT---WAVIHHMLGGIRYLIWD 94
+ + L A +HM G+R+L WD
Sbjct: 59 FFFFVFHWFIILLVNLTFLAFCYHMSNGVRHLWWD 93
>gi|302896466|ref|XP_003047113.1| hypothetical protein NECHADRAFT_70858 [Nectria haematococca mpVI
77-13-4]
gi|256728041|gb|EEU41400.1| hypothetical protein NECHADRAFT_70858 [Nectria haematococca mpVI
77-13-4]
Length = 189
Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 16/125 (12%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIV-HRITGSV----------VYLGTPVVVFWFFCIANGEH 55
NRP+SPHL IY++ T F S +RITG YL PVV A+
Sbjct: 64 NRPVSPHLGIYKMEQTWFGSSAWNRITGCTLSATMYAFMGAYLVAPVVGL-HLETASVAA 122
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
L + G V F + ++H++ G ++L++D+ K + I AS
Sbjct: 123 AFGGLPLVVKGGVKLALGFPF----VYHLINGFKHLLYDMGKGFAKPTIKKTDNILWAAS 178
Query: 116 ILTVL 120
IL +
Sbjct: 179 ILGAI 183
>gi|315048699|ref|XP_003173724.1| succinate dehydrogenase cytochrome B subunit [Arthroderma gypseum
CBS 118893]
gi|311341691|gb|EFR00894.1| succinate dehydrogenase cytochrome B subunit [Arthroderma gypseum
CBS 118893]
Length = 221
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 17/129 (13%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVV----------YLGTPVVVFWFFCIANGEHT 56
NRP+SPHL IY+ T ++S ++RITG+++ YL +P++ + +
Sbjct: 98 NRPVSPHLTIYQPQITWYLSSLNRITGAMLSGSLYLFASAYLISPLLGWHLESASLAAAF 157
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK--IATQMAKINIIA 114
+ G F + L H G+R+L+WD+ L K I T + +
Sbjct: 158 AALPIAAKIGMKFTMAL-----PFTFHCFNGVRHLVWDLGKQLTNKQVITTGWTVVGLTL 212
Query: 115 SILTVLIVW 123
S L +W
Sbjct: 213 SSALALAMW 221
>gi|332977198|gb|EGK13995.1| succinate dehydrogenase cytochrome b558 subunit [Psychrobacter sp.
1501(2011)]
Length = 125
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 68/129 (52%), Gaps = 12/129 (9%)
Query: 4 IKNNRPLS-PHLQIYRL--IPTMFVSIVHRITGSVVYLGTPVVVFWFF--CIANGEHTLS 58
+K+NRP++ P Q+ + PT SI+HRI+G ++++ PV++ W I + +H
Sbjct: 1 MKSNRPINLPLSQVISVNSSPTARASILHRISGIILFILIPVML-WLLQTSIYSPQH--- 56
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN-IIASIL 117
D V +++ A +H + GI++L D+ + + + ++ +IA+IL
Sbjct: 57 -FDAIFDNMVLRFIAWIFVAATAYHFVMGIKHLFADMGFNEELQSGRTASIVSLVIAAIL 115
Query: 118 TVL-IVWII 125
VL +W++
Sbjct: 116 IVLSFIWVM 124
>gi|225717282|gb|ACO14487.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Esox lucius]
Length = 173
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
K NRP+SPH+ +Y+ M +SI HR TG + G + S Y+
Sbjct: 47 KLNRPMSPHVTVYKWSVPMMMSISHRGTGLGLSAGVSAFALLALVLPG------SYPYYL 100
Query: 65 D--------GSVFEVCLFLYTWAVIHHMLGGIRYLIWD 94
D ++ + F + + +H GIR+L WD
Sbjct: 101 DLIHSQSFGPALIGLAKFGIAFPLSYHTFNGIRHLCWD 138
>gi|256021205|ref|ZP_05435070.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Shigella sp. D9]
gi|307314814|ref|ZP_07594408.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
W]
gi|332282431|ref|ZP_08394844.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Shigella sp. D9]
gi|306905712|gb|EFN36240.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
W]
gi|315059964|gb|ADT74291.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli W]
gi|323379476|gb|ADX51744.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
KO11]
gi|332104783|gb|EGJ08129.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Shigella sp. D9]
Length = 134
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ +++ W +LSS
Sbjct: 9 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILL-WLLGT-----SLSSPEG 62
Query: 63 YMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDVSLCLD-----KKIATQMAKIN 111
+ S F+ W ++ +H++ GIR+++ D + K+ A I
Sbjct: 63 FEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKTSFVIT 122
Query: 112 IIASILTVLIVW 123
++ S+L ++VW
Sbjct: 123 VVLSLLAGVLVW 134
>gi|89073516|ref|ZP_01160039.1| putative succinate dehydrogenase; fumaratereductase, cytochrome
bsubunit [Photobacterium sp. SKA34]
gi|89050780|gb|EAR56261.1| putative succinate dehydrogenase; fumaratereductase, cytochrome
bsubunit [Photobacterium sp. SKA34]
Length = 133
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ R T SI+HR++G + ++ ++++ + +S
Sbjct: 10 VKKPRPVNLDLQTIRFPLTAIASILHRVSGVITFVSLAILLWLLNLSLSSPEGFTSAASV 69
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
D + L+ A+ +H++ GIR+L+ D L +++ T +A I +I+ VL V+
Sbjct: 70 TDSFFVKFILWGVLTALFYHIVLGIRHLLMD--LGYFEEMDTGIASTKISFAIVAVLAVF 127
>gi|107026777|ref|YP_624288.1| succinate dehydrogenase, cytochrome b subunit [Burkholderia
cenocepacia AU 1054]
gi|116692031|ref|YP_837564.1| succinate dehydrogenase, cytochrome b subunit [Burkholderia
cenocepacia HI2424]
gi|170735976|ref|YP_001777236.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
cenocepacia MC0-3]
gi|254248724|ref|ZP_04942044.1| Succinate dehydrogenase, cytochrome b subunit [Burkholderia
cenocepacia PC184]
gi|105896151|gb|ABF79315.1| succinate dehydrogenase subunit C [Burkholderia cenocepacia AU
1054]
gi|116650031|gb|ABK10671.1| succinate dehydrogenase subunit C [Burkholderia cenocepacia HI2424]
gi|124875225|gb|EAY65215.1| Succinate dehydrogenase, cytochrome b subunit [Burkholderia
cenocepacia PC184]
gi|169818164|gb|ACA92746.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
cenocepacia MC0-3]
Length = 138
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 2 SSIKNNRPLSPHLQI------YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
+++ RP ++ I YR+ +SI+HRI+G++++L P ++F F E
Sbjct: 3 DAVRKPRPEYRNIGIGDITLKYRMPLAAILSILHRISGALLFLFLPFLLFLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
+ + ++ V ++ + +WA HH GIR+L+ DV+
Sbjct: 63 SFEVFKAFLSNIVVKLVVLALSWAFFHHFCAGIRHLLMDVN 103
>gi|323495090|ref|ZP_08100177.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio brasiliensis LMG 20546]
gi|323310641|gb|EGA63818.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio brasiliensis LMG 20546]
Length = 130
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HR++G + ++ ++++ + + +
Sbjct: 8 RKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSISLSSPVGYAEAVDIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA----SILTVL 120
DG + L+ A+ +H+ GG+R+L+ D+ + + AK+ A S+L +
Sbjct: 68 DGFFVKFILWGILTALAYHIAGGVRHLLMDMGHFEELESGAMSAKVAFAATAVLSLLAGV 127
Query: 121 IVW 123
+VW
Sbjct: 128 MVW 130
>gi|160872194|ref|ZP_02062326.1| succinate dehydrogenase, cytochrome b556 subunit [Rickettsiella
grylli]
gi|159120993|gb|EDP46331.1| succinate dehydrogenase, cytochrome b556 subunit [Rickettsiella
grylli]
Length = 123
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 53/111 (47%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+ RP++ +L R T VSI+HR++G +++L PV + ++ +
Sbjct: 2 SKRPINLNLLTIRFPMTAIVSILHRLSGFLLFLAIPVFLMLMTLTLQSPEAFFTVHVCFE 61
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ ++ L + A+ +H+ GIR+L D + K A A ++A++
Sbjct: 62 HPLMKLFLLGFLAALFYHLFAGIRHLFMDAGVADTLKSAQWTAGFVMVATL 112
>gi|308186067|ref|YP_003930198.1| succinate dehydrogenase cytochrome b-556 subunit [Pantoea vagans
C9-1]
gi|308056577|gb|ADO08749.1| succinate dehydrogenase cytochrome b-556 subunit [Pantoea vagans
C9-1]
Length = 146
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ L R T SI+HR++G + + ++++ +
Sbjct: 20 KTVKKQRPVNLDLSTIRFPVTAISSILHRVSGVITLVAIGILLWLLGLSLSSPEGFQHAA 79
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV-----SLCLDKKIATQMAKINIIASI 116
MDG + ++ A+ +H + GIR+++ D +L + K+ A I ++ +I
Sbjct: 80 SIMDGFFAKFIMWGILTALAYHAVSGIRHMLMDFGYLAETLEVGKRSAHMTFVITVVLAI 139
Query: 117 LTVLIVW 123
L ++VW
Sbjct: 140 LAGVLVW 146
>gi|225717882|gb|ACO14787.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Caligus clemensi]
Length = 173
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 15/96 (15%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG----SVVYLGTPVVVFWFFCIANGEHTLSSLR- 61
NRP+SPHL IY+ T +SI HRI+G +++Y G F +N + S+
Sbjct: 56 NRPMSPHLTIYKPQLTSMLSISHRISGMYLTAILYSGG---FLPFVLPSNFPTFIQSIEI 112
Query: 62 --CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV 95
+ F + + +A+ H G+R+L+WD+
Sbjct: 113 APLLVTAGKFAIA---FPFAI--HTYNGLRHLLWDM 143
>gi|154285510|ref|XP_001543550.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150407191|gb|EDN02732.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 187
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 44/107 (41%), Gaps = 17/107 (15%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSV----------VYLGTPVVVFWFFCIANGEHT 56
NRP+SPHL IYR T +S +RITG V YL P ++ W A+
Sbjct: 64 NRPVSPHLSIYRPQITWILSSTNRITGVVLSGGLYIFASAYLVAP-LLGWHLESASIAAA 122
Query: 57 LSSLRCYMDGSVFEVCL-FLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ L + CL F H G R+L+WD+ K
Sbjct: 123 FAGLPL-----AAKFCLKFAAALPFTFHSFNGCRHLVWDMGKQFTNK 164
>gi|167624415|ref|YP_001674709.1| succinate dehydrogenase cytochrome b556 subunit [Shewanella
halifaxensis HAW-EB4]
gi|167354437|gb|ABZ77050.1| Succinate dehydrogenase cytochrome b556 subunit [Shewanella
halifaxensis HAW-EB4]
Length = 124
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFF--CIANGEHTLSSLR 61
+K RP+ +LQ R T SI+HR++G ++ +++ W +A+ E + + ++
Sbjct: 1 MKKQRPVHLNLQTIRFPATAIASILHRVSGVIMLFAVGILI-WLLNESLASAE-SFAGVQ 58
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASIL 117
D + + ++ A+ +H++ G+R+L+ D + AK+ I S++
Sbjct: 59 SLFDNFIVKFIVWGILTALGYHLIVGLRHLVMDAGYWEELSSGLTSAKVAIGLSVV 114
>gi|172062859|ref|YP_001810510.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
ambifaria MC40-6]
gi|171995376|gb|ACB66294.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
ambifaria MC40-6]
Length = 138
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 2 SSIKNNRPLSPHLQI------YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
+++ RP ++ I YR+ +SI+HR++G++++L P ++F F E
Sbjct: 3 DAVRKPRPEYRNIGIGDITLKYRMPLAAILSILHRVSGALLFLFLPFLLFLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
+ + ++ V ++ + +WA +HH GIR+L+ DV+
Sbjct: 63 SFEVFKAFLSNIVVKLIVLALSWAFLHHFCAGIRHLLMDVN 103
>gi|115358062|ref|YP_775200.1| succinate dehydrogenase, cytochrome b subunit [Burkholderia
ambifaria AMMD]
gi|115283350|gb|ABI88866.1| succinate dehydrogenase subunit C [Burkholderia ambifaria AMMD]
Length = 138
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 2 SSIKNNRPLSPHLQI------YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
+++ RP ++ I YR+ +SI+HR++G++++L P V+F F E
Sbjct: 3 DAVRKPRPEYRNIGIGDITLKYRMPLAAILSILHRVSGALLFLFLPFVLFLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
+ + ++ V ++ + +WA +HH GIR+L+ DV+
Sbjct: 63 SFEVFKAFLSNIVVKLIVLALSWAFLHHFCAGIRHLLMDVN 103
>gi|294141510|ref|YP_003557488.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
violacea DSS12]
gi|293327979|dbj|BAJ02710.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
violacea DSS12]
Length = 124
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP+ LQ R T SI+HR++G ++ ++++ + + ++
Sbjct: 1 MKKQRPVHLDLQTIRFPATAIASILHRVSGVIMLFAVGILIWLLSESLASPESFAGVQSL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLC---LDKKIATQMAKINIIASILTVL 120
D + + ++ A+ +H++ GIR+LI D C L IA+ A + + ++
Sbjct: 61 FDNLLVKFVIWGILTALGYHLIVGIRHLIMDAG-CWEELPAGIASAKAAFALSFAFSIIV 119
Query: 121 IVWI 124
VW+
Sbjct: 120 GVWV 123
>gi|161486280|ref|NP_752728.2| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli CFT073]
gi|218549714|ref|YP_002383505.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia fergusonii ATCC 35469]
gi|218688515|ref|YP_002396727.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli ED1a]
gi|218699076|ref|YP_002406705.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli IAI39]
gi|331656738|ref|ZP_08357700.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
TA206]
gi|218357255|emb|CAQ89890.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia fergusonii ATCC 35469]
gi|218369062|emb|CAR16816.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli IAI39]
gi|218426079|emb|CAR06897.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli ED1a]
gi|222032458|emb|CAP75197.1| Succinate dehydrogenase cytochrome b556 subunit [Escherichia coli
LF82]
gi|281177864|dbj|BAI54194.1| succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
SE15]
gi|284920499|emb|CBG33561.1| succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
042]
gi|331054986|gb|EGI26995.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
TA206]
Length = 129
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ +++ W +LSS
Sbjct: 4 NVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILL-WLLGT-----SLSSPEG 57
Query: 63 YMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDVSLCLDK-KIATQMAKIN---- 111
+ S F+ W ++ +H++ GIR+++ D + + + AKI+
Sbjct: 58 FEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVIT 117
Query: 112 IIASILTVLIVW 123
++ S+L ++VW
Sbjct: 118 VVLSLLAGVLVW 129
>gi|238024241|ref|YP_002908473.1| succinate dehydrogenase, cytochrome b subunit [Burkholderia glumae
BGR1]
gi|237878906|gb|ACR31238.1| Succinate dehydrogenase, cytochrome b subunit [Burkholderia glumae
BGR1]
Length = 138
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 66/130 (50%), Gaps = 7/130 (5%)
Query: 2 SSIKNNRPLSPHLQI------YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
+++ RP ++ I YRL +SI HR++G++++L P +++ F E
Sbjct: 3 EAVRKPRPEYRNIGIGDITLKYRLPLAGQLSIFHRVSGALLFLSLPFLLYLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMAKINIIA 114
+ + + V ++ + + +WA +HH GIR+L+ DV+ + K+ + A + +
Sbjct: 63 SFDVFKAFFSNIVVKLIVLVLSWAFLHHFCAGIRHLLMDVNHDAVTKEGGKRTAAVVFVV 122
Query: 115 SILTVLIVWI 124
S+ L+V +
Sbjct: 123 SLALTLVVAL 132
>gi|212635740|ref|YP_002312265.1| succinate dehydrogenase, cytochrome b subunit [Shewanella
piezotolerans WP3]
gi|212557224|gb|ACJ29678.1| Succinate dehydrogenase, cytochrome b subunit [Shewanella
piezotolerans WP3]
Length = 146
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFF--CIANGEHTLSS 59
++K RP+ LQ + T SI+HR++G ++ +++ W +A+ E + +
Sbjct: 21 QNVKKQRPVHLDLQTVKFPATAIASILHRVSGVIMLFAVGILI-WLLNESLASAE-SFAG 78
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASIL 117
++ D + + ++ A+ +H++ G+R+L+ D + AK+ I S++
Sbjct: 79 VQSLFDSFIVKFIVWGILTALGYHLIVGLRHLVMDAGYWEELSSGLASAKVAIALSVV 136
>gi|195452088|ref|XP_002073207.1| GK13274 [Drosophila willistoni]
gi|194169292|gb|EDW84193.1| GK13274 [Drosophila willistoni]
Length = 174
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 12/103 (11%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIAN--GEHTLSSLRCYM 64
R +SPHL IY+ T +SI HR TG + +G W + H +S +
Sbjct: 54 GRKVSPHLTIYQPQLTSILSITHRGTGMALGVGV-----WALGLGALISSHDISHYVTIV 108
Query: 65 DG-----SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+G + F+ + H GIR+L+WD L K
Sbjct: 109 EGLQLSDAQLTAIKFIIAYPAGFHTANGIRHLLWDTGRFLKIK 151
>gi|297537886|ref|YP_003673655.1| succinate dehydrogenase, cytochrome b556 subunit [Methylotenera sp.
301]
gi|297257233|gb|ADI29078.1| succinate dehydrogenase, cytochrome b556 subunit [Methylotenera sp.
301]
Length = 141
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWF-FCIANGEHTLSSLRCYMD 65
+RP + +L RL VSI+HR TG V++L PV++ F + + EH ++ +
Sbjct: 20 SRPKNLNLFTIRLPINALVSILHRATGCVLFLILPVILLLLQFSLNSAEH-YEAVIAILH 78
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDV 95
+ ++ L WA HH GIR+L DV
Sbjct: 79 SPLIKIMLLGLAWAFFHHFFAGIRHLAMDV 108
>gi|209917972|ref|YP_002292056.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli SE11]
gi|218553248|ref|YP_002386161.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli IAI1]
gi|260842928|ref|YP_003220706.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O103:H2 str. 12009]
gi|260853956|ref|YP_003227847.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O26:H11 str. 11368]
gi|260866852|ref|YP_003233254.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O111:H- str. 11128]
gi|209911231|dbj|BAG76305.1| succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
SE11]
gi|218360016|emb|CAQ97563.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli IAI1]
gi|257752605|dbj|BAI24107.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O26:H11 str. 11368]
gi|257758075|dbj|BAI29572.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O103:H2 str. 12009]
gi|257763208|dbj|BAI34703.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O111:H- str. 11128]
gi|323153766|gb|EFZ40013.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
EPECa14]
Length = 129
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ +++ W +LSS
Sbjct: 4 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFIAVGILL-WLLGT-----SLSSPEG 57
Query: 63 YMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDVSLCLDK-KIATQMAKIN---- 111
+ S F+ W ++ +H++ GIR+++ D + + + AKI+
Sbjct: 58 FEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVIT 117
Query: 112 IIASILTVLIVW 123
++ S+L ++VW
Sbjct: 118 VVLSLLAGVLVW 129
>gi|171316069|ref|ZP_02905295.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
ambifaria MEX-5]
gi|171098771|gb|EDT43564.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
ambifaria MEX-5]
Length = 138
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 2 SSIKNNRPLSPHLQI------YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
+++ RP ++ I YR+ +SI+HR++G++++L P ++F F E
Sbjct: 3 DAVRKPRPEYRNIGIGDITLKYRMPLAAILSILHRVSGALLFLFLPFLLFLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
+ + ++ V ++ + +WA +HH GIR+L+ DV+
Sbjct: 63 SFEVFKAFLSNIVVKLVVLALSWAFLHHFCAGIRHLLMDVN 103
>gi|193065547|ref|ZP_03046615.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
E22]
gi|194429052|ref|ZP_03061583.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
B171]
gi|192926836|gb|EDV81462.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
E22]
gi|194412883|gb|EDX29174.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
B171]
gi|324020372|gb|EGB89591.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 117-3]
Length = 134
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ +++ W +LSS
Sbjct: 9 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFIAVGILL-WLLGT-----SLSSPEG 62
Query: 63 YMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDVSLCLDK-KIATQMAKIN---- 111
+ S F+ W ++ +H++ GIR+++ D + + + AKI+
Sbjct: 63 FEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVIT 122
Query: 112 IIASILTVLIVW 123
++ S+L ++VW
Sbjct: 123 VVLSLLAGVLVW 134
>gi|157375953|ref|YP_001474553.1| succinate dehydrogenase, cytochrome b subunit [Shewanella sediminis
HAW-EB3]
gi|157318327|gb|ABV37425.1| succinate dehydrogenase, cytochrome b subunit [Shewanella sediminis
HAW-EB3]
Length = 124
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP+ LQ R T SI+HR++G ++ ++++ + ++ +
Sbjct: 1 MKKQRPVHLDLQTIRFPATAIASILHRVSGVIMLFAVGILIWLLNESLASPESFAATQSL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLC--LDKKIATQMA--KINIIASILTV 119
D + + ++ A+ +H++ G+R+LI D L IA+ A ++I+ SI+
Sbjct: 61 FDNLLVKFVIWGILTALGYHLIVGVRHLIMDTGRWEELASGIASAKAAFALSIVFSIIVG 120
Query: 120 LIVW 123
+ VW
Sbjct: 121 IWVW 124
>gi|15800425|ref|NP_286437.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O157:H7 EDL933]
gi|15830000|ref|NP_308773.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O157:H7 str. Sakai]
gi|16128696|ref|NP_415249.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli str. K-12 substr. MG1655]
gi|74311245|ref|YP_309664.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Shigella sonnei Ss046]
gi|82543148|ref|YP_407095.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Shigella boydii Sb227]
gi|82775989|ref|YP_402336.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Shigella dysenteriae Sd197]
gi|89107579|ref|AP_001359.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli str. K-12 substr. W3110]
gi|170080388|ref|YP_001729708.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli str. K-12 substr. DH10B]
gi|218694145|ref|YP_002401812.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli 55989]
gi|218704038|ref|YP_002411557.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli UMN026]
gi|238899986|ref|YP_002925782.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli BW2952]
gi|254160791|ref|YP_003043899.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli B str. REL606]
gi|254791867|ref|YP_003076704.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O157:H7 str. TW14359]
gi|291281653|ref|YP_003498471.1| Succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
O55:H7 str. CB9615]
gi|293403965|ref|ZP_06647959.1| sdhC [Escherichia coli FVEC1412]
gi|293409095|ref|ZP_06652671.1| succinate dehydrogenase [Escherichia coli B354]
gi|297521386|ref|ZP_06939772.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli OP50]
gi|298379741|ref|ZP_06989346.1| sdhC [Escherichia coli FVEC1302]
gi|60392191|sp|P69054|DHSC_ECOLI RecName: Full=Succinate dehydrogenase cytochrome b556 subunit;
Short=Cytochrome b-556
gi|60392192|sp|P69055|DHSC_ECO57 RecName: Full=Succinate dehydrogenase cytochrome b556 subunit;
Short=Cytochrome b-556
gi|28948820|pdb|1NEK|C Chain C, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Ubiquinone Bound
gi|28948824|pdb|1NEN|C Chain C, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Dinitrophenol-17 Inhibitor Co-Crystallized At The
Ubiquinone Binding Site
gi|85544086|pdb|2ACZ|C Chain C, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Atpenin A5 Inhibitor Co-Crystallized At The Ubiquinone
Binding Site
gi|256599502|pdb|2WDQ|C Chain C, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
gi|256599506|pdb|2WDQ|G Chain G, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
gi|256599510|pdb|2WDQ|K Chain K, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
gi|256599514|pdb|2WDV|C Chain C, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
gi|256599518|pdb|2WDV|G Chain G, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
gi|256599522|pdb|2WDV|K Chain K, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
gi|259045635|pdb|2WDR|C Chain C, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
gi|259045639|pdb|2WDR|G Chain G, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
gi|259045643|pdb|2WDR|K Chain K, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
gi|304445590|pdb|2WP9|C Chain C, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
gi|304445594|pdb|2WP9|G Chain G, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
gi|304445598|pdb|2WP9|K Chain K, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
gi|304445614|pdb|2WS3|C Chain C, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
gi|304445618|pdb|2WS3|G Chain G, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
gi|304445622|pdb|2WS3|K Chain K, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
gi|304445642|pdb|2WU5|C Chain C, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
gi|304445646|pdb|2WU5|G Chain G, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
gi|304445650|pdb|2WU5|K Chain K, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
gi|12513636|gb|AAG55045.1|AE005250_4 succinate dehydrogenase, cytochrome b556 [Escherichia coli O157:H7
str. EDL933]
gi|42923|emb|CAA25485.1| unnamed protein product [Escherichia coli]
gi|146197|gb|AAA23893.1| succinate dehydrogenase [Escherichia coli K-12]
gi|495784|gb|AAA24616.1| succinate dehydrogenase [Escherichia coli]
gi|1651317|dbj|BAA35388.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli str. K12 substr. W3110]
gi|1786940|gb|AAC73815.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli str. K-12 substr. MG1655]
gi|13360204|dbj|BAB34169.1| succinate dehydrogenase [Escherichia coli O157:H7 str. Sakai]
gi|73854722|gb|AAZ87429.1| succinate dehydrogenase, cytochrome b556 [Shigella sonnei Ss046]
gi|81240137|gb|ABB60847.1| succinate dehydrogenase [Shigella dysenteriae Sd197]
gi|81244559|gb|ABB65267.1| succinate dehydrogenase [Shigella boydii Sb227]
gi|169888223|gb|ACB01930.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli str. K-12 substr. DH10B]
gi|209776538|gb|ACI86581.1| succinate dehydrogenase [Escherichia coli]
gi|209776540|gb|ACI86582.1| succinate dehydrogenase [Escherichia coli]
gi|209776542|gb|ACI86583.1| succinate dehydrogenase [Escherichia coli]
gi|209776544|gb|ACI86584.1| succinate dehydrogenase [Escherichia coli]
gi|209776546|gb|ACI86585.1| succinate dehydrogenase [Escherichia coli]
gi|218350877|emb|CAU96575.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli 55989]
gi|218431135|emb|CAR12011.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli UMN026]
gi|238863588|gb|ACR65586.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli BW2952]
gi|242376483|emb|CAQ31187.1| succinate dehydrogenase membrane protein, subunit of succinate
dehydrogenase [Escherichia coli BL21(DE3)]
gi|253972692|gb|ACT38363.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli B str. REL606]
gi|253976886|gb|ACT42556.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli BL21(DE3)]
gi|254591267|gb|ACT70628.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli O157:H7 str. TW14359]
gi|290761526|gb|ADD55487.1| Succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
O55:H7 str. CB9615]
gi|291428551|gb|EFF01576.1| sdhC [Escherichia coli FVEC1412]
gi|291469563|gb|EFF12047.1| succinate dehydrogenase [Escherichia coli B354]
gi|298279439|gb|EFI20947.1| sdhC [Escherichia coli FVEC1302]
gi|309700943|emb|CBJ00240.1| succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
ETEC H10407]
gi|324116262|gb|EGC10183.1| succinate dehydrogenase [Escherichia coli E1167]
gi|332342056|gb|AEE55390.1| succinate dehydrogenase, cytochrome b556 subunit, SdhC [Escherichia
coli UMNK88]
Length = 129
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ +++ W +LSS
Sbjct: 4 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILL-WLLGT-----SLSSPEG 57
Query: 63 YMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDVSLCLDK-KIATQMAKIN---- 111
+ S F+ W ++ +H++ GIR+++ D + + + AKI+
Sbjct: 58 FEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVIT 117
Query: 112 IIASILTVLIVW 123
++ S+L ++VW
Sbjct: 118 VVLSLLAGVLVW 129
>gi|215485740|ref|YP_002328171.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O127:H6 str. E2348/69]
gi|218557637|ref|YP_002390550.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli S88]
gi|312965151|ref|ZP_07779388.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
2362-75]
gi|215263812|emb|CAS08149.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli O127:H6 str. E2348/69]
gi|218364406|emb|CAR02086.2| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli S88]
gi|312290242|gb|EFR18125.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
2362-75]
Length = 129
Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ +++ W +LSS
Sbjct: 4 NVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILL-WLLGT-----SLSSPEG 57
Query: 63 YMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDVSLCLDK-KIATQMAKIN---- 111
+ S F+ W ++ +H++ GIR+++ D + + + AKI+
Sbjct: 58 FEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVIT 117
Query: 112 IIASILTVLIVW 123
++ S+L ++VW
Sbjct: 118 VVFSLLAGVLVW 129
>gi|110640930|ref|YP_668658.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli 536]
gi|170679876|ref|YP_001742822.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli SMS-3-5]
gi|227884312|ref|ZP_04002117.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli 83972]
gi|300937822|ref|ZP_07152618.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 21-1]
gi|300989869|ref|ZP_07178998.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 45-1]
gi|301020818|ref|ZP_07184882.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 69-1]
gi|301046045|ref|ZP_07193225.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 185-1]
gi|306812870|ref|ZP_07447063.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli NC101]
gi|331645870|ref|ZP_08346973.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
M605]
gi|26107087|gb|AAN79271.1|AE016757_175 Succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
CFT073]
gi|110342522|gb|ABG68759.1| succinate dehydrogenase cytochrome subunit [Escherichia coli 536]
gi|170517594|gb|ACB15772.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
SMS-3-5]
gi|227838398|gb|EEJ48864.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli 83972]
gi|300301962|gb|EFJ58347.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 185-1]
gi|300398464|gb|EFJ82002.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 69-1]
gi|300407272|gb|EFJ90810.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 45-1]
gi|300457187|gb|EFK20680.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 21-1]
gi|305853633|gb|EFM54072.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli NC101]
gi|307552573|gb|ADN45348.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
ABU 83972]
gi|312945246|gb|ADR26073.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O83:H1 str. NRG 857C]
gi|315292034|gb|EFU51386.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 153-1]
gi|315299240|gb|EFU58494.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 16-3]
gi|323967428|gb|EGB62848.1| succinate dehydrogenase [Escherichia coli M863]
gi|323976308|gb|EGB71398.1| succinate dehydrogenase [Escherichia coli TW10509]
gi|324006245|gb|EGB75464.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 57-2]
gi|324114831|gb|EGC08799.1| succinate dehydrogenase [Escherichia fergusonii B253]
gi|331044622|gb|EGI16749.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
M605]
Length = 134
Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ +++ W +LSS
Sbjct: 9 NVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILL-WLLGT-----SLSSPEG 62
Query: 63 YMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDVSLCLDK-KIATQMAKIN---- 111
+ S F+ W ++ +H++ GIR+++ D + + + AKI+
Sbjct: 63 FEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVIT 122
Query: 112 IIASILTVLIVW 123
++ S+L ++VW
Sbjct: 123 VVLSLLAGVLVW 134
>gi|209916098|gb|ACI95893.1| succinate dehydrogenase subunit 3 [Isoetes engelmannii]
gi|217331572|gb|ACK38298.1| succinate dehydrogenase subunit 3 [Isoetes engelmannii]
gi|217331586|gb|ACK38312.1| succinate dehydrogenase subunit 3 [Isoetes engelmannii]
Length = 98
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K NRPLSPHL IY+ T SI HRI+G+++ + F+ I + T +
Sbjct: 1 MKINRPLSPHLTIYKPQLTSTFSIFHRISGALLAAKV-LFSLPFWKIGDLSLTFYHSYSF 59
Query: 64 MDGSVFEVCLFLYT---WAVIHHMLGGIRYLIWD 94
+ L A +HM G+R+L WD
Sbjct: 60 FFFVFHWFIILLVNLTFLAFCYHMSNGVRHLWWD 93
>gi|330813447|ref|YP_004357686.1| succinate dehydrogenase cytochrome b-556 subunit [Candidatus
Pelagibacter sp. IMCC9063]
gi|327486542|gb|AEA80947.1| succinate dehydrogenase cytochrome b-556 subunit [Candidatus
Pelagibacter sp. IMCC9063]
Length = 65
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 76 YTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
+TW+ +H+L G+R+L WD+ + K A + +S L +I+W++
Sbjct: 15 FTWSFCYHLLNGLRHLFWDMGYGYEIKTANFSGIFVLTSSFLLTIILWVVS 65
>gi|115721219|ref|XP_001188484.1| PREDICTED: similar to LOC496650 protein, partial
[Strongylocentrotus purpuratus]
gi|115803641|ref|XP_782812.2| PREDICTED: similar to LOC496650 protein, partial
[Strongylocentrotus purpuratus]
Length = 116
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-EHTLSSLRCYMD 65
NRP+SPHL IY T +SI HR TG + +G + + + H L ++
Sbjct: 30 NRPMSPHLTIYSPQVTSMLSITHRGTGVGLTVGIYALGLSMSVLPHDFAHYLEMIKALSF 89
Query: 66 G-SVFEVCLFLYTWAVIHHMLGGIRYL 91
G S+ + W V H L G+R+L
Sbjct: 90 GPSLLFLTKMAIVWPVAFHSLNGVRHL 116
>gi|295841399|dbj|BAJ07113.1| succinate dehydrogenase subunit C [Corynespora cassiicola]
Length = 177
Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIAN---GEH----TLSS 59
RP+SPHL IYR T + S +RITG V L + +F F +A G H ++ +
Sbjct: 53 QRPVSPHLSIYRPQITWYASSFNRITG--VALSGGLYLFGFAYLAAPTLGWHLETQSMVA 110
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQ 106
+ H L G+R+L WD+ L K Q
Sbjct: 111 AVAAWPVAAKVAAKISIAMPFFFHSLNGLRHLSWDIGLGFKNKAVIQ 157
>gi|296808871|ref|XP_002844774.1| succinate dehydrogenase cytochrome b560 subunit [Arthroderma otae
CBS 113480]
gi|238844257|gb|EEQ33919.1| succinate dehydrogenase cytochrome b560 subunit [Arthroderma otae
CBS 113480]
Length = 225
Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 17/107 (15%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVV----------YLGTPVVVFWFFCIANGEHT 56
NRP+SPHL IYR T ++S ++RITG+++ YL +P++ W E
Sbjct: 102 NRPVSPHLSIYRPQITWYLSSLNRITGAILSGSLYIFASAYLVSPLLG-WHL-----ESA 155
Query: 57 LSSLRCYMDGSVFEVCL-FLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ +V + F H G+R+L+WD+ L +
Sbjct: 156 SLAAAFAALPIAAKVAMKFTMALPFTFHCYNGVRHLVWDMGKQLTNQ 202
>gi|332535002|ref|ZP_08410818.1| succinate dehydrogenase cytochrome b-556 subunit [Pseudoalteromonas
haloplanktis ANT/505]
gi|332035569|gb|EGI72062.1| succinate dehydrogenase cytochrome b-556 subunit [Pseudoalteromonas
haloplanktis ANT/505]
Length = 137
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVF-WFFCIANGEHTLSSLR 61
++K RP++ L + T SI HR+TG ++ V++ W +++ E ++
Sbjct: 12 TVKKQRPVNLDLTTISMPATAKASIFHRVTGVALFFALTFVIWAWSESLSSAE-GFEFVK 70
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+G + + + + +H++GGIR++I D+ + + AK+++ ++ ++
Sbjct: 71 GLFNGFIAKFIAWGTVSVLGYHLIGGIRHMIMDMGHWEELESGNLSAKVSMALGVVFAVL 130
Query: 122 --VWI 124
VWI
Sbjct: 131 AGVWI 135
>gi|295841401|dbj|BAJ07114.1| succinate dehydrogenase subunit C [Corynespora cassiicola]
Length = 177
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIAN---GEH----TLSS 59
RP+SPHL IYR T + S +RITG V L + +F F +A G H ++ +
Sbjct: 53 QRPVSPHLSIYRPQITWYASPFNRITG--VALSGGLYLFGFAYLAAPTLGWHLETQSMVA 110
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQ 106
+ H L G+R+L WD+ L K Q
Sbjct: 111 AVAAWPVAAKVAAKISIAMPFFFHSLNGLRHLSWDIGLGFKNKAVIQ 157
>gi|323398684|ref|YP_004222759.1| succinate dehydrogenase subunit 3 [Glaucocystis nostochinearum]
gi|321401377|gb|ADW83131.1| succinate dehydrogenase subunit 3 [Glaucocystis nostochinearum]
Length = 142
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
NRP+SPHL IY++ +SI +RI+ V L + + W+ I ++L +
Sbjct: 4 NRPISPHLSIYKIQINSLLSITNRISSLV--LSSIIFSIWYNHILYNIFYTNNLYYLLIK 61
Query: 67 SVFEVCLF----------LYTWAVIHHMLGGIRYLIWDVSLCLD 100
++F L+ +H+ GIR+L WD+ L
Sbjct: 62 NIFITLLYNDIFIKSFIFFIFLNFYYHIFSGIRHLYWDIGQGLK 105
>gi|254253640|ref|ZP_04946957.1| Succinate dehydrogenase cytochrome b subunit [Burkholderia dolosa
AUO158]
gi|124898285|gb|EAY70128.1| Succinate dehydrogenase cytochrome b subunit [Burkholderia dolosa
AUO158]
Length = 138
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YRL +SI+HR++G++++L P ++F F E + + ++ V ++ + +
Sbjct: 24 YRLPLAAKLSILHRVSGALLFLFLPFLLFLFDQSLTSELSFEVFKAFLSNIVVKLIVLVL 83
Query: 77 TWAVIHHMLGGIRYLIWDVS 96
+WA HH GIR+L+ DV+
Sbjct: 84 SWAFFHHFCAGIRHLLMDVN 103
>gi|332184747|gb|AEE27001.1| Succinate dehydrogenase cytochrome b-556 subunit [Francisella cf.
novicida 3523]
Length = 126
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M I N +S ++ Y T SI+HRI+G V+ + P+ V G
Sbjct: 1 MKKITNIDLMS--IKSYNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQT 58
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ S F V +L+ ++ +H+ GIR++I D+ K+A + + I+ +L+ +
Sbjct: 59 VAVLTKSWFSVFFWLFLSSITYHVYAGIRHMIMDMGFGESMKVAKLTSLLVIVLGVLSAV 118
Query: 121 I 121
+
Sbjct: 119 L 119
>gi|221203641|ref|ZP_03576659.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
multivorans CGD2]
gi|221175807|gb|EEE08236.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
multivorans CGD2]
Length = 117
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YRL +SI+HR++G++++L P ++F F E + + ++ V ++ + +
Sbjct: 3 YRLPLAAKLSILHRVSGALLFLFLPFLLFLFDQSLTSELSFEVFKAFLSNIVVKLIVLVL 62
Query: 77 TWAVIHHMLGGIRYLIWDVS 96
+WA HH GIR+L+ DV+
Sbjct: 63 SWAFFHHFCAGIRHLLMDVN 82
>gi|161521191|ref|YP_001584618.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
multivorans ATCC 17616]
gi|189352633|ref|YP_001948260.1| succinate dehydrogenase cytochrome b-556 subunit [Burkholderia
multivorans ATCC 17616]
gi|221196968|ref|ZP_03570015.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
multivorans CGD2M]
gi|221212430|ref|ZP_03585407.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
multivorans CGD1]
gi|160345241|gb|ABX18326.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
multivorans ATCC 17616]
gi|189336655|dbj|BAG45724.1| succinate dehydrogenase cytochrome b-556 subunit [Burkholderia
multivorans ATCC 17616]
gi|221167529|gb|EED99998.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
multivorans CGD1]
gi|221183522|gb|EEE15922.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
multivorans CGD2M]
Length = 138
Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YRL +SI+HR++G++++L P ++F F E + + ++ V ++ + +
Sbjct: 24 YRLPLAAKLSILHRVSGALLFLFLPFLLFLFDQSLTSELSFEVFKAFLSNIVVKLIVLVL 83
Query: 77 TWAVIHHMLGGIRYLIWDVS 96
+WA HH GIR+L+ DV+
Sbjct: 84 SWAFFHHFCAGIRHLLMDVN 103
>gi|304395703|ref|ZP_07377586.1| succinate dehydrogenase, cytochrome b556 subunit [Pantoea sp. aB]
gi|304356997|gb|EFM21361.1| succinate dehydrogenase, cytochrome b556 subunit [Pantoea sp. aB]
Length = 146
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ L R T SI+HR++G + + ++++ +
Sbjct: 20 KTVKKQRPVNLDLSTIRFPVTAITSILHRVSGVITLVAIGILLWLLGLSLSSPEGFQHAA 79
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV-----SLCLDKKIATQMAKINIIASI 116
MDG + ++ A+ +H + GIR+++ D +L K+ A I ++ +I
Sbjct: 80 SIMDGFFAKFIMWGILTALAYHAVSGIRHMLMDFGYLAETLESGKRSAHMTFVITVVLAI 139
Query: 117 LTVLIVW 123
L ++VW
Sbjct: 140 LAGVLVW 146
>gi|91209755|ref|YP_539741.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli UTI89]
gi|117622915|ref|YP_851828.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli APEC O1]
gi|237707317|ref|ZP_04537798.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia sp. 3_2_53FAA]
gi|91071329|gb|ABE06210.1| succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
UTI89]
gi|115512039|gb|ABJ00114.1| succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
APEC O1]
gi|226898527|gb|EEH84786.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia sp. 3_2_53FAA]
gi|294490296|gb|ADE89052.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
IHE3034]
gi|307627864|gb|ADN72168.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli UM146]
gi|315287165|gb|EFU46577.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 110-3]
gi|323952720|gb|EGB48588.1| succinate dehydrogenase [Escherichia coli H252]
gi|323958465|gb|EGB54171.1| succinate dehydrogenase [Escherichia coli H263]
Length = 134
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ +++ W +LSS
Sbjct: 9 NVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILL-WLLGT-----SLSSPEG 62
Query: 63 YMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDVSLCLDK-KIATQMAKIN---- 111
+ S F+ W ++ +H++ GIR+++ D + + + AKI+
Sbjct: 63 FEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVIT 122
Query: 112 IIASILTVLIVW 123
++ S+L ++VW
Sbjct: 123 VVFSLLAGVLVW 134
>gi|157154902|ref|YP_001461881.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli E24377A]
gi|157160201|ref|YP_001457519.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli HS]
gi|168750652|ref|ZP_02775674.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4113]
gi|168757174|ref|ZP_02782181.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4401]
gi|168764002|ref|ZP_02789009.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4501]
gi|168767161|ref|ZP_02792168.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4486]
gi|168779204|ref|ZP_02804211.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4076]
gi|168786874|ref|ZP_02811881.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC869]
gi|168801370|ref|ZP_02826377.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC508]
gi|170020934|ref|YP_001725888.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli ATCC 8739]
gi|187730828|ref|YP_001879375.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Shigella boydii CDC 3083-94]
gi|188495042|ref|ZP_03002312.1| succinate dehydrogenase cytochrome b556 subunit [Escherichia coli
53638]
gi|191167211|ref|ZP_03029030.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
B7A]
gi|193070632|ref|ZP_03051569.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
E110019]
gi|194433973|ref|ZP_03066244.1| succinate dehydrogenase, cytochrome b556 subunit [Shigella
dysenteriae 1012]
gi|194439251|ref|ZP_03071331.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
101-1]
gi|195939062|ref|ZP_03084444.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O157:H7 str. EC4024]
gi|208809581|ref|ZP_03251918.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4206]
gi|208815578|ref|ZP_03256757.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4045]
gi|208823149|ref|ZP_03263467.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4042]
gi|209397702|ref|YP_002269343.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4115]
gi|217326122|ref|ZP_03442206.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. TW14588]
gi|253774308|ref|YP_003037139.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|256023677|ref|ZP_05437542.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia sp. 4_1_40B]
gi|261224422|ref|ZP_05938703.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. FRIK2000]
gi|261254587|ref|ZP_05947120.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. FRIK966]
gi|293413998|ref|ZP_06656647.1| succinate dehydrogenase [Escherichia coli B185]
gi|300816369|ref|ZP_07096591.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 107-1]
gi|300822991|ref|ZP_07103126.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 119-7]
gi|300900716|ref|ZP_07118865.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 198-1]
gi|300906978|ref|ZP_07124647.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 84-1]
gi|300918380|ref|ZP_07134980.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 115-1]
gi|300929475|ref|ZP_07144943.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 187-1]
gi|300947200|ref|ZP_07161410.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 116-1]
gi|300957667|ref|ZP_07169857.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 175-1]
gi|301027099|ref|ZP_07190471.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 196-1]
gi|301305207|ref|ZP_07211305.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 124-1]
gi|301648024|ref|ZP_07247791.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 146-1]
gi|307137332|ref|ZP_07496688.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli H736]
gi|309797434|ref|ZP_07691826.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 145-7]
gi|331641222|ref|ZP_08342357.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
H736]
gi|331651719|ref|ZP_08352738.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
M718]
gi|331662074|ref|ZP_08362997.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
TA143]
gi|331667087|ref|ZP_08367952.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
TA271]
gi|331672237|ref|ZP_08373028.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
TA280]
gi|331676403|ref|ZP_08377100.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
H591]
gi|331682152|ref|ZP_08382774.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
H299]
gi|157065881|gb|ABV05136.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
HS]
gi|157076932|gb|ABV16640.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
E24377A]
gi|169755862|gb|ACA78561.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
ATCC 8739]
gi|187427820|gb|ACD07094.1| succinate dehydrogenase, cytochrome b556 subunit [Shigella boydii
CDC 3083-94]
gi|188015176|gb|EDU53298.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4113]
gi|188490241|gb|EDU65344.1| succinate dehydrogenase cytochrome b556 subunit [Escherichia coli
53638]
gi|189003141|gb|EDU72127.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4076]
gi|189355778|gb|EDU74197.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4401]
gi|189363510|gb|EDU81929.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4486]
gi|189365913|gb|EDU84329.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4501]
gi|189372990|gb|EDU91406.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC869]
gi|189376480|gb|EDU94896.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC508]
gi|190902759|gb|EDV62489.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
B7A]
gi|192956020|gb|EDV86486.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
E110019]
gi|194417738|gb|EDX33836.1| succinate dehydrogenase, cytochrome b556 subunit [Shigella
dysenteriae 1012]
gi|194421836|gb|EDX37843.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
101-1]
gi|208729382|gb|EDZ78983.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4206]
gi|208732226|gb|EDZ80914.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4045]
gi|208737342|gb|EDZ85026.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4042]
gi|209159102|gb|ACI36535.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4115]
gi|217322343|gb|EEC30767.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. TW14588]
gi|253325352|gb|ACT29954.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|260450125|gb|ACX40547.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
DH1]
gi|291434056|gb|EFF07029.1| succinate dehydrogenase [Escherichia coli B185]
gi|299879433|gb|EFI87644.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 196-1]
gi|300315612|gb|EFJ65396.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 175-1]
gi|300355775|gb|EFJ71645.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 198-1]
gi|300401199|gb|EFJ84737.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 84-1]
gi|300414443|gb|EFJ97753.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 115-1]
gi|300453186|gb|EFK16806.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 116-1]
gi|300462584|gb|EFK26077.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 187-1]
gi|300524532|gb|EFK45601.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 119-7]
gi|300531059|gb|EFK52121.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 107-1]
gi|300839519|gb|EFK67279.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 124-1]
gi|301073850|gb|EFK88656.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 146-1]
gi|308118958|gb|EFO56220.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 145-7]
gi|315135377|dbj|BAJ42536.1| succinate dehydrogenase [Escherichia coli DH1]
gi|315257638|gb|EFU37606.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 85-1]
gi|320637968|gb|EFX07737.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O157:H7 str. G5101]
gi|320643363|gb|EFX12543.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O157:H- str. 493-89]
gi|320648712|gb|EFX17345.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O157:H- str. H 2687]
gi|320654296|gb|EFX22349.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320659929|gb|EFX27471.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O55:H7 str. USDA 5905]
gi|320664753|gb|EFX31891.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O157:H7 str. LSU-61]
gi|323938299|gb|EGB34556.1| succinate dehydrogenase [Escherichia coli E1520]
gi|323942943|gb|EGB39107.1| succinate dehydrogenase [Escherichia coli E482]
gi|323947014|gb|EGB43028.1| succinate dehydrogenase [Escherichia coli H120]
gi|323963102|gb|EGB58672.1| succinate dehydrogenase [Escherichia coli H489]
gi|323972006|gb|EGB67226.1| succinate dehydrogenase [Escherichia coli TA007]
gi|331038020|gb|EGI10240.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
H736]
gi|331049997|gb|EGI22055.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
M718]
gi|331060496|gb|EGI32460.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
TA143]
gi|331065443|gb|EGI37336.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
TA271]
gi|331070432|gb|EGI41796.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
TA280]
gi|331075896|gb|EGI47193.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
H591]
gi|331080576|gb|EGI51752.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
H299]
Length = 134
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ +++ W +LSS
Sbjct: 9 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILL-WLLGT-----SLSSPEG 62
Query: 63 YMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDVSLCLDK-KIATQMAKIN---- 111
+ S F+ W ++ +H++ GIR+++ D + + + AKI+
Sbjct: 63 FEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVIT 122
Query: 112 IIASILTVLIVW 123
++ S+L ++VW
Sbjct: 123 VVLSLLAGVLVW 134
>gi|221129025|ref|XP_002164804.1| PREDICTED: similar to succinate dehydrogenase complex, subunit C
[Hydra magnipapillata]
Length = 186
Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 11/125 (8%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA-----NGEHTLSS 59
+ RPLSPH+ IY+ +S HR TG L +VF A E +
Sbjct: 60 RMQRPLSPHITIYKFELPGLLSGTHRFTG----LAMSGIVFTVGSAALLLPGGAESYIDM 115
Query: 60 LRCY-MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI-L 117
+R + V L + + +H + G+R+LIWD + K + + SI L
Sbjct: 116 IRALNLPIWVLAPAKCLIAFPLCYHTVNGVRHLIWDTGRGFEMKTLYKTGYFAVATSIAL 175
Query: 118 TVLIV 122
T+ IV
Sbjct: 176 TIGIV 180
>gi|296103350|ref|YP_003613496.1| succinate dehydrogenase cytochrome b-556 subunit [Enterobacter
cloacae subsp. cloacae ATCC 13047]
gi|295057809|gb|ADF62547.1| succinate dehydrogenase cytochrome b-556 subunit [Enterobacter
cloacae subsp. cloacae ATCC 13047]
Length = 159
Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ L+ R T SI+HR++G + ++ +++ W +LSS
Sbjct: 34 NVKKQRPVNLDLKTIRFPVTAIASILHRVSGVITFVAVGILL-WLLGT-----SLSSPEG 87
Query: 63 YMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDVSLCLD-----KKIATQMAKIN 111
++ S F+ W ++ +H++ GIR+++ D + K+ A I
Sbjct: 88 FLQASAIMNSFFVKFIMWGILTALAYHVVVGIRHMLMDFGYLEETFEAGKRSANISFVIT 147
Query: 112 IIASILTVLIVW 123
++ S+L ++VW
Sbjct: 148 VVLSLLAGVLVW 159
>gi|170702918|ref|ZP_02893759.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
ambifaria IOP40-10]
gi|170132177|gb|EDT00664.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
ambifaria IOP40-10]
Length = 138
Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 2 SSIKNNRPLSPHLQI------YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
+++ RP ++ I YR+ +SI+HR++G++++L P V+F F E
Sbjct: 3 DAVRKPRPEYRNIGIGDITLKYRMPLAAILSILHRVSGALLFLFLPFVLFLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
+ + ++ V ++ + +WA HH GIR+L+ DV+
Sbjct: 63 SFEVFKAFLSNIVVKLIVLALSWAFFHHFCAGIRHLLMDVN 103
>gi|119472931|ref|ZP_01614804.1| putative succinate dehydrogenase, hydrophobic subunit, cytochrome
b556 with sdhD [Alteromonadales bacterium TW-7]
gi|119444649|gb|EAW25958.1| putative succinate dehydrogenase, hydrophobic subunit, cytochrome
b556 with sdhD [Alteromonadales bacterium TW-7]
Length = 153
Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVF-WFFCIANGEHTLSSLR 61
++K RP++ L + T SI HR+TG ++ V++ W +++ E + ++
Sbjct: 28 TVKKQRPVNLDLTTISMPATAKASIFHRVTGVALFFALTFVIWAWSESLSSAE-SFEFVK 86
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+G + + + + +H++GGIR+++ D+ + + AKI + ++ ++
Sbjct: 87 GLFNGFIAKFIAWGTISVLGYHLIGGIRHMVMDMGHWEELESGNLSAKIAMALGVVFAVL 146
Query: 122 --VWI 124
VWI
Sbjct: 147 AGVWI 151
>gi|254434682|ref|ZP_05048190.1| succinate dehydrogenase, cytochrome b556 subunit [Nitrosococcus
oceani AFC27]
gi|207091015|gb|EDZ68286.1| succinate dehydrogenase, cytochrome b556 subunit [Nitrosococcus
oceani AFC27]
Length = 102
Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 17/104 (16%)
Query: 29 HRITGSVVYLGTPVVVFWF-FCIANGE------HTLSSLRCYMDGSVFEVCLFLYTWAVI 81
HRI+G ++ PVVV+ F + + E SSL + G V WA++
Sbjct: 2 HRISGVILLFFIPVVVYLLDFSLRDKESFVWVTEFFSSLPVRLVGIV-------ALWALL 54
Query: 82 HHMLGGIRYLIWDV---SLCLDKKIATQMAKINIIASILTVLIV 122
HH+ GIR+L++D+ + D + + +I+A ++T+LIV
Sbjct: 55 HHIFAGIRFLLFDIHMGKIVKDYRPSWSARITSILALVVTLLIV 98
>gi|191174045|ref|ZP_03035561.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
F11]
gi|300996468|ref|ZP_07181442.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 200-1]
gi|190905653|gb|EDV65276.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
F11]
gi|300304522|gb|EFJ59042.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 200-1]
gi|324010442|gb|EGB79661.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 60-1]
Length = 134
Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ +++ W +LSS
Sbjct: 9 NLKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILL-WLLGT-----SLSSPEG 62
Query: 63 YMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDVSLCLDK-KIATQMAKIN---- 111
+ S F+ W ++ +H++ GIR+++ D + + + AKI+
Sbjct: 63 FEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVIT 122
Query: 112 IIASILTVLIVW 123
++ S+L ++VW
Sbjct: 123 VVLSLLAGVLVW 134
>gi|332970371|gb|EGK09363.1| succinate dehydrogenase cytochrome b558 subunit [Kingella kingae
ATCC 23330]
Length = 127
Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 20 IPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWA 79
IP + VSI+HR +G ++L P+++ + + + D + ++ L+ W
Sbjct: 21 IPAI-VSILHRASGVAIFLFLPILLALLAGSLSSGEVFLQYKSWADNAFIKLILWGILWL 79
Query: 80 VIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
IHH+ GIR+L+ D + ++ + A + A+I + + T
Sbjct: 80 FIHHLFAGIRFLLIDAHIGVELQAARKSARIVLFGAAATAF 120
>gi|134301286|ref|YP_001121254.1| succinate dehydrogenase, cytochrome b subunit [Francisella
tularensis subsp. tularensis WY96-3418]
gi|167009437|ref|ZP_02274368.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. holarctica FSC200]
gi|194324383|ref|ZP_03058156.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. novicida FTE]
gi|208780227|ref|ZP_03247569.1| succinate dehydrogenase, cytochrome b556 [Francisella novicida FTG]
gi|134049063|gb|ABO46134.1| succinate dehydrogenase, cytochrome b subunit [Francisella
tularensis subsp. tularensis WY96-3418]
gi|194321448|gb|EDX18933.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. novicida FTE]
gi|208743876|gb|EDZ90178.1| succinate dehydrogenase, cytochrome b556 [Francisella novicida FTG]
gi|282158360|gb|ADA77751.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. tularensis NE061598]
Length = 126
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M I N +S ++ Y T SI+HRI+G V+ + P+ V G
Sbjct: 1 MKKITNIDLMS--IKSYNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQT 58
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ S F V +L+ ++ +H+ GIR++I D+ K+A + + I+ +L+ +
Sbjct: 59 VTVLTKSWFSVFFWLFLSSITYHVYAGIRHMIMDMGFGESMKVAKITSLLVIVLGVLSAI 118
Query: 121 I 121
+
Sbjct: 119 L 119
>gi|302878557|ref|YP_003847121.1| succinate dehydrogenase, cytochrome b556 subunit [Gallionella
capsiferriformans ES-2]
gi|302581346|gb|ADL55357.1| succinate dehydrogenase, cytochrome b556 subunit [Gallionella
capsiferriformans ES-2]
Length = 124
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RP L + +L FVSI+HRI+G ++L P+ + T +SL +
Sbjct: 3 KKRPKHLALHLIKLPLPGFVSILHRISGLALFLALPLFLLMLQYSLRSVETYTSLMDVLS 62
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS-ILTVLI 121
+ ++ L W+ +HH GIRYL D+ + A +KI ++ S +LTVLI
Sbjct: 63 HPLAKLVLLGLLWSFLHHFCAGIRYLAIDLHYISNLAEARSSSKIVMVVSLLLTVLI 119
>gi|195571827|ref|XP_002103902.1| GD20679 [Drosophila simulans]
gi|194199829|gb|EDX13405.1| GD20679 [Drosophila simulans]
Length = 152
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG-SVVYLGTPVVVFWFFCIANGEHTLSSLRC-YM 64
R LSPHL IY+ T +SI HR TG ++ + + + H ++ + +
Sbjct: 32 GRELSPHLTIYQPQLTSMLSICHRGTGLALGVGVWGLGLGALISSHDISHYVTMVEGLQL 91
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
G+ F+ + +H GIR+L+WD L K
Sbjct: 92 SGATLTALKFIIAYPAGYHTANGIRHLLWDTGRFLKIK 129
>gi|313814|emb|CAA52088.1| succinate dehydrogenase cytochrome b subunit [Saccharomyces
cerevisiae]
Length = 198
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 22/137 (16%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG------- 53
++ + RP+SPHL IY+ T ++S +HRI S+V +G + F+ F I G
Sbjct: 68 LNKQRAKRPISPHLTIYQPQLTWYLSSLHRI--SLVLMG---LGFYLFTILFGVSGLLGL 122
Query: 54 EHTLSSLRCYMDGSVFEVCL------FLYTWAVIHHMLGGIRYLIWDVS--LCLDKKIAT 105
T + + ++ F Y +A+ H G IR+LIWD + L L T
Sbjct: 123 GLTTEKVSNWYHQKFSKITEWSIKGSFAYLFAI--HYGGAIRHLIWDTAKELTLKGVYRT 180
Query: 106 QMAKINIIASILTVLIV 122
A I A + T L+
Sbjct: 181 GYALIGFTAVLGTYLLT 197
>gi|325182722|emb|CCA17177.1| transmembrane protein putative [Albugo laibachii Nc14]
Length = 170
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE--HTLSSLRCYMD 65
RP+SPH+QIY + T SI +R+TG + +G V + + G+ + S + +
Sbjct: 43 RPVSPHVQIYAMPITAVSSITNRVTGVGLSVG--FVAASSYALVGGDVPSLIHSAQVSIP 100
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWD 94
LF+ + + +H L IR++ WD
Sbjct: 101 AFTPLSKLFV-AFPLSYHTLAAIRHMAWD 128
>gi|195389540|ref|XP_002053434.1| GJ23876 [Drosophila virilis]
gi|194151520|gb|EDW66954.1| GJ23876 [Drosophila virilis]
Length = 269
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT-PVVVFWFFCIANGEHTLSSL-RCYMD 65
R +SPHL IY+ T +SI RI+G ++ +G + + C + + +C
Sbjct: 100 RAMSPHLSIYKKQLTSVMSIFLRISGFILGIGIWTIGLTGLLCDIDVNAMAEKIEKCDCS 159
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+VF + +H++ G R+LIW +++ L K+
Sbjct: 160 RTVFNMLKLFIIIPFAYHIVAGTRHLIWHLNVFLSKR 196
>gi|114775456|ref|ZP_01451024.1| hypothetical protein SPV1_03988 [Mariprofundus ferrooxydans PV-1]
gi|114553567|gb|EAU55948.1| hypothetical protein SPV1_03988 [Mariprofundus ferrooxydans PV-1]
Length = 104
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 50/103 (48%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M S+VHR +G V+ L P+ ++ + + ++ + ++ L+L A+
Sbjct: 1 MLASVVHRASGLVLVLFVPLYLWLLHGMTGSPEDFVQAQSWLHSELGKLSLWLAGIALFF 60
Query: 83 HMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
H G+R+L D C +++ A+I I +++ LI+ I+
Sbjct: 61 HFCNGLRFLSIDAGWCESRQMMRLSARIVIALTLVIALILGIL 103
>gi|194902122|ref|XP_001980598.1| GG17240 [Drosophila erecta]
gi|190652301|gb|EDV49556.1| GG17240 [Drosophila erecta]
Length = 152
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG-SVVYLGTPVVVFWFFCIANGEHTLSSLRC-YM 64
R LSPHL IY+ T +SI HR TG ++ + + + H ++ + +
Sbjct: 32 GRKLSPHLTIYQPQLTSMLSICHRGTGLALGVGVWGLGLGALISSHDISHYVTMVEGLQL 91
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
G+ F+ + +H GIR+L+WD L K
Sbjct: 92 SGATLTALKFIIAYPAGYHTANGIRHLLWDTGRFLKIK 129
>gi|38048273|gb|AAR10039.1| similar to Drosophila melanogaster CG6666 [Drosophila yakuba]
Length = 152
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG-SVVYLGTPVVVFWFFCIANGEHTLSSLRC-YM 64
R LSPHL IY+ T +SI HR TG ++ + + + H ++ + +
Sbjct: 32 GRKLSPHLTIYQPQLTSMLSICHRGTGLALGVGVWGLGLGALISSHDISHYVTMVEGLQL 91
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
G+ F+ + +H GIR+L+WD L K
Sbjct: 92 SGATLTALKFIIAYPAGYHTANGIRHLLWDTGRFLKIK 129
>gi|21064663|gb|AAM29561.1| RH04289p [Drosophila melanogaster]
Length = 171
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG-SVVYLGTPVVVFWFFCIANGEHTLSSLRC-YM 64
R LSPHL IY+ T +SI HR TG ++ + + + H ++ + +
Sbjct: 51 GRELSPHLTIYQPQLTSMLSICHRGTGLALGVGVWGLGLGALISSHDISHYVTMVEGLQL 110
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
G+ F+ + +H GIR+L+WD L K
Sbjct: 111 SGATLTALKFIIAYPAGYHTANGIRHLLWDTGRFLKIK 148
>gi|6322708|ref|NP_012781.1| Sdh3p [Saccharomyces cerevisiae S288c]
gi|464750|sp|P33421|SDH3_YEAST RecName: Full=Succinate dehydrogenase [ubiquinone] cytochrome b
subunit, mitochondrial; Flags: Precursor
gi|396438|emb|CAA80957.1| succinate dehydrogenase cytochrome b subunit [Saccharomyces
cerevisiae]
gi|486241|emb|CAA81982.1| SDH3 [Saccharomyces cerevisiae]
gi|51013499|gb|AAT93043.1| YKL141W [Saccharomyces cerevisiae]
gi|285813124|tpg|DAA09021.1| TPA: Sdh3p [Saccharomyces cerevisiae S288c]
Length = 198
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 22/133 (16%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-------EHTL 57
+ RP+SPHL IY+ T ++S +HRI S+V +G + F+ F I G T
Sbjct: 72 RAKRPISPHLTIYQPQLTWYLSSLHRI--SLVLMG---LGFYLFTILFGVSGLLGLGLTT 126
Query: 58 SSLRCYMDGSVFEVCL------FLYTWAVIHHMLGGIRYLIWDVS--LCLDKKIATQMAK 109
+ + ++ F Y +A+ H G IR+LIWD + L L T A
Sbjct: 127 EKVSNWYHQKFSKITEWSIKGSFAYLFAI--HYGGAIRHLIWDTAKELTLKGVYRTGYAL 184
Query: 110 INIIASILTVLIV 122
I A + T L+
Sbjct: 185 IGFTAVLGTYLLT 197
>gi|89257051|ref|YP_514413.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. holarctica LVS]
gi|89144882|emb|CAJ80227.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. holarctica LVS]
Length = 129
Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MSSIKNNRPLS-PHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
MSS+K + ++ Y T SI+HRI+G V+ + P+ V G
Sbjct: 1 MSSMKKITNIDLMSIKSYNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQ 60
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ S F V +L+ ++ +H+ GIR++I D+ K+A + + I+ +L+
Sbjct: 61 TVTVLTKSWFSVFFWLFLSSITYHVYAGIRHMIMDMGFGESMKVAKITSLLVIVLGVLSA 120
Query: 120 LI 121
++
Sbjct: 121 IL 122
>gi|86147665|ref|ZP_01065974.1| Succinate dehydrogenase [Vibrio sp. MED222]
gi|85834576|gb|EAQ52725.1| Succinate dehydrogenase [Vibrio sp. MED222]
Length = 126
Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RP++ LQ T SI+HR++G + ++ ++++ + +
Sbjct: 4 RKTRPVNLDLQTIHFPITAIASILHRVSGVITFVAIGILLWLLSISLSSPVGFMEASDIV 63
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA----SILTVL 120
DG + L+ A+ +H+ GGIR+L+ D+ + + + AK+ A S+L +
Sbjct: 64 DGFFVKFILWGILTALAYHIAGGIRHLLMDLGHFEELESGAKSAKVAFAATAVLSLLAGI 123
Query: 121 IVW 123
+VW
Sbjct: 124 LVW 126
>gi|45550736|ref|NP_650047.3| succinate dehydrogenase C [Drosophila melanogaster]
gi|195329931|ref|XP_002031662.1| GM26120 [Drosophila sechellia]
gi|17946639|gb|AAL49350.1| RH44771p [Drosophila melanogaster]
gi|45446453|gb|AAF54602.2| succinate dehydrogenase C [Drosophila melanogaster]
gi|194120605|gb|EDW42648.1| GM26120 [Drosophila sechellia]
Length = 171
Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG-SVVYLGTPVVVFWFFCIANGEHTLSSLRC-YM 64
R LSPHL IY+ T +SI HR TG ++ + + + H ++ + +
Sbjct: 51 GRELSPHLTIYQPQLTSMLSICHRGTGLALGVGVWGLGLGALISSHDISHYVTMVEGLQL 110
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
G+ F+ + +H GIR+L+WD L K
Sbjct: 111 SGATLTALKFIIAYPAGYHTANGIRHLLWDTGRFLKIK 148
>gi|332678935|gb|AEE88064.1| Succinate dehydrogenase cytochrome b-556 subunit [Francisella cf.
novicida Fx1]
Length = 126
Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M I N +S ++ Y T SI+HRI+G V+ + P+ V G
Sbjct: 1 MKKITNIDLMS--IKSYNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQT 58
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ S F V +L+ ++ +H+ GIR++I D+ K+A + + I+ +L+ +
Sbjct: 59 VTILTKSWFSVFFWLFLSSITYHVYAGIRHMIMDMGFGESMKVAKITSLLVIVLGVLSAI 118
Query: 121 I 121
+
Sbjct: 119 L 119
>gi|110804651|ref|YP_688171.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Shigella flexneri 5 str. 8401]
gi|161485938|ref|NP_706513.2| succinate dehydrogenase cytochrome b556 large membrane subunit
[Shigella flexneri 2a str. 301]
gi|161486531|ref|NP_836287.2| succinate dehydrogenase cytochrome b556 large membrane subunit
[Shigella flexneri 2a str. 2457T]
gi|110614199|gb|ABF02866.1| succinate dehydrogenase, cytochrome b556 [Shigella flexneri 5 str.
8401]
gi|281599964|gb|ADA72948.1| Succinate dehydrogenase cytochrome b-556 subunit [Shigella flexneri
2002017]
Length = 129
Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++ W +LSS
Sbjct: 4 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILQ-WLLGT-----SLSSPEG 57
Query: 63 YMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDVSLCLDK-KIATQMAKIN---- 111
+ S F+ W ++ +H++ GIR+++ D + + + AKI+
Sbjct: 58 FEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVIT 117
Query: 112 IIASILTVLIVW 123
++ S+L ++VW
Sbjct: 118 VVLSLLAGVLVW 129
>gi|218710215|ref|YP_002417836.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio splendidus LGP32]
gi|218323234|emb|CAV19411.1| Succinate dehydrogenase cytochrome [Vibrio splendidus LGP32]
Length = 130
Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RP++ LQ T SI+HR++G + ++ ++++ + +
Sbjct: 8 RKTRPVNLDLQTIHFPITAIASILHRVSGVITFVAIGILLWLLSISLSSPVGFMEASDIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA----SILTVL 120
DG + L+ A+ +H+ GGIR+L+ D+ + + + AK+ A S+L +
Sbjct: 68 DGFFVKFILWGILTALAYHIAGGIRHLLMDLGHFEELESGAKSAKVAFAATAVLSLLAGI 127
Query: 121 IVW 123
+VW
Sbjct: 128 LVW 130
>gi|195499973|ref|XP_002097176.1| GE24640 [Drosophila yakuba]
gi|194183277|gb|EDW96888.1| GE24640 [Drosophila yakuba]
Length = 171
Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG-SVVYLGTPVVVFWFFCIANGEHTLSSLRC-YM 64
R LSPHL IY+ T +SI HR TG ++ + + + H ++ + +
Sbjct: 51 GRKLSPHLTIYQPQLTSMLSICHRGTGLALGVGVWGLGLGALISSHDISHYVTMVEGLQL 110
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
G+ F+ + +H GIR+L+WD L K
Sbjct: 111 SGATLTALKFIIAYPAGYHTANGIRHLLWDTGRFLKIK 148
>gi|312071011|ref|XP_003138411.1| hypothetical protein LOAG_02826 [Loa loa]
gi|307766426|gb|EFO25660.1| hypothetical protein LOAG_02826 [Loa loa]
Length = 187
Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA-NGEHTLSSLRCY-M 64
RP+SPHL +Y+ T VS HR+TG + + F + N + +R +
Sbjct: 52 KRPISPHLTVYKPQVTWMVSGFHRVTGCAMAGALLIGGVGFALLPLNFTTFIDFIRGLGL 111
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
V ++ F+ + ++ H L GIR++ +D++L D
Sbjct: 112 PWVVTDMFKFVIAYPIVFHSLNGIRFIAFDLALGTD 147
>gi|330820918|ref|YP_004349780.1| Succinate dehydrogenase, cytochrome b subunit [Burkholderia
gladioli BSR3]
gi|327372913|gb|AEA64268.1| Succinate dehydrogenase, cytochrome b subunit [Burkholderia
gladioli BSR3]
Length = 138
Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 2 SSIKNNRPLSPHLQI------YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
+++ RP ++ I YRL +SI HRI+G++++L P ++F F E
Sbjct: 3 EAVRKPRPEYRNIGIGDITRHYRLPIAGQLSIFHRISGALLFLSLPFLLFLFDKSLTSEI 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ + ++ + ++ + + WA +HH GIR+L+ DV+ K + + I +
Sbjct: 63 SFDVFKAFLSNIIVKLVVLVLAWAFLHHFCAGIRHLLMDVNHDAVTKESGKRTAIVVFVV 122
Query: 116 ILTVLIVWIIK 126
L + +V+ +K
Sbjct: 123 SLALTLVFALK 133
>gi|293432990|ref|ZP_06661418.1| succinate dehydrogenase [Escherichia coli B088]
gi|309786385|ref|ZP_07681011.1| succinate dehydrogenase, cytochrome b556 subunit [Shigella
dysenteriae 1617]
gi|291323809|gb|EFE63231.1| succinate dehydrogenase [Escherichia coli B088]
gi|308925779|gb|EFP71260.1| succinate dehydrogenase, cytochrome b556 subunit [Shigella
dysenteriae 1617]
Length = 125
Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 17/131 (12%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ R T SI+HR++G + ++ +++ W +LSS +
Sbjct: 1 MKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILL-WLLGT-----SLSSPEGF 54
Query: 64 MDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDVSLCLDK-KIATQMAKIN----I 112
S F+ W ++ +H++ GIR+++ D + + + AKI+ +
Sbjct: 55 EQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITV 114
Query: 113 IASILTVLIVW 123
+ S+L ++VW
Sbjct: 115 VLSLLAGVLVW 125
>gi|323347731|gb|EGA81995.1| Sdh3p [Saccharomyces cerevisiae Lalvin QA23]
Length = 143
Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG------- 53
++ + RP+SPHL IY+ T ++S HRI S+V +G + F+ F I G
Sbjct: 13 LNKQRAXRPISPHLTIYQPQLTWYLSSFHRI--SLVLMG---LGFYLFTILFGVSGLLGL 67
Query: 54 EHTLSSLRCYMDGSVFEVCL------FLYTWAVIHHMLGGIRYLIWDVS--LCLDKKIAT 105
T + + ++ F Y +A+ H G IR+LIWD + L L T
Sbjct: 68 GLTTEKVSNWYHQKFSKITEWSIKGSFAYLFAI--HYGGAIRHLIWDTAKELTLKGVYRT 125
Query: 106 QMAKINIIASILTVLIV 122
A I A + T L+
Sbjct: 126 GYALIGFTAVLGTYLLT 142
>gi|56707251|ref|YP_169147.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. tularensis SCHU S4]
gi|110669721|ref|YP_666278.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. tularensis FSC198]
gi|115315406|ref|YP_764129.1| succinate dehydrogenase [Francisella tularensis subsp. holarctica
OSU18]
gi|118498201|ref|YP_899251.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. novicida U112]
gi|169656758|ref|YP_001429325.2| succinate dehydrogenase, cytochrome b subunit [Francisella
tularensis subsp. holarctica FTNF002-00]
gi|187931028|ref|YP_001891012.1| succinate dehydrogenase, cytochrome b556 subunit [Francisella
tularensis subsp. mediasiatica FSC147]
gi|254369935|ref|ZP_04985943.1| succinate dehydrogenase [Francisella tularensis subsp. tularensis
FSC033]
gi|254373545|ref|ZP_04989032.1| succinate dehydrogenase [Francisella tularensis subsp. novicida
GA99-3549]
gi|254375009|ref|ZP_04990489.1| succinate dehydrogenase [Francisella novicida GA99-3548]
gi|56603743|emb|CAG44705.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. tularensis SCHU S4]
gi|110320054|emb|CAL08088.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. tularensis FSC198]
gi|115130305|gb|ABI83492.1| succinate dehydrogenase [Francisella tularensis subsp. holarctica
OSU18]
gi|118424107|gb|ABK90497.1| succinate dehydrogenase, cytochrome b556 [Francisella novicida
U112]
gi|151568181|gb|EDN33835.1| succinate dehydrogenase [Francisella tularensis subsp. tularensis
FSC033]
gi|151571270|gb|EDN36924.1| succinate dehydrogenase [Francisella novicida GA99-3549]
gi|151572727|gb|EDN38381.1| succinate dehydrogenase [Francisella novicida GA99-3548]
gi|164551826|gb|ABU62369.2| succinate dehydrogenase, cytochrome b subunit [Francisella
tularensis subsp. holarctica FTNF002-00]
gi|187711937|gb|ACD30234.1| succinate dehydrogenase, cytochrome b556 subunit [Francisella
tularensis subsp. mediasiatica FSC147]
Length = 157
Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MSSIKNNRPLS-PHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
MSS+K + ++ Y T SI+HRI+G V+ + P+ V G
Sbjct: 29 MSSMKKITNIDLMSIKSYNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQ 88
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ S F V +L+ ++ +H+ GIR++I D+ K+A + + I+ +L+
Sbjct: 89 TVTVLTKSWFSVFFWLFLSSITYHVYAGIRHMIMDMGFGESMKVAKITSLLVIVLGVLSA 148
Query: 120 LI 121
++
Sbjct: 149 IL 150
>gi|127512580|ref|YP_001093777.1| succinate dehydrogenase, cytochrome b subunit [Shewanella loihica
PV-4]
gi|126637875|gb|ABO23518.1| succinate dehydrogenase subunit C [Shewanella loihica PV-4]
Length = 131
Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 46/95 (48%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP+ LQ R T SI+HR++G ++ ++++ + + ++
Sbjct: 6 QNVKKQRPVHLDLQTIRFPATAIASILHRVSGVIMLFAVGILIWLLSESLASAESFAGIQ 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
D + + ++ A+ +H++ G+R+LI D
Sbjct: 66 SLFDTFIVKFVVWGILTALGYHLIVGLRHLIMDTG 100
>gi|300926124|ref|ZP_07141937.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 182-1]
gi|301327913|ref|ZP_07221084.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 78-1]
gi|300417823|gb|EFK01134.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 182-1]
gi|300845556|gb|EFK73316.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 78-1]
Length = 134
Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ +++ W +LSS
Sbjct: 9 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILL-WLLGT-----SLSSPEG 62
Query: 63 YMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDVSLCLDK-KIATQMAKIN---- 111
+ S F+ W ++ +H++ GIR+++ D + + + AKI+
Sbjct: 63 FEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVIT 122
Query: 112 IIASILTVLIVW 123
++ S L ++VW
Sbjct: 123 VVLSFLAGVLVW 134
>gi|294506383|ref|YP_003570441.1| Succinate dehydrogenase hydrophobic membrane anchor subunit
[Salinibacter ruber M8]
gi|294342711|emb|CBH23489.1| Succinate dehydrogenase hydrophobic membrane anchor subunit
[Salinibacter ruber M8]
Length = 153
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 16/107 (14%)
Query: 1 MSSIKNNRPLSPH-----------LQIYRLIPTMFVSIVHRITGS--VVYLGTPVVVFWF 47
M+ RP +P Q YR+ MF ++HR+TG VVYL +V W
Sbjct: 1 MAVDTKERPSAPQETNATAEQESRFQSYRIRTGMFAWMMHRLTGVGLVVYL---IVHIWG 57
Query: 48 FCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWD 94
T ++L +F+V F AV +H + G+R ++ D
Sbjct: 58 LTALTDPETFNALIAKYHSPIFKVGEFALLVAVAYHAMNGLRLVLID 104
>gi|254369888|ref|ZP_04985897.1| succinate dehydrogenase [Francisella tularensis subsp. holarctica
FSC022]
gi|157122858|gb|EDO66975.1| succinate dehydrogenase [Francisella tularensis subsp. holarctica
FSC022]
Length = 157
Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M I N +S ++ Y T SI+HRI+G V+ + P+ V G
Sbjct: 32 MKKITNIDLMS--IKSYNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQT 89
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ S F V +L+ ++ +H+ GIR++I D+ K+A + + I+ +L+ +
Sbjct: 90 VTVLTKSWFSVFFWLFLSSITYHVYAGIRHMIMDMGFGESMKVAKITSLLVIVLGVLSAI 149
Query: 121 I 121
+
Sbjct: 150 L 150
>gi|170585370|ref|XP_001897457.1| Succinate dehydrogenase cytochrome b560 subunit,
mitochondrialprecursor [Brugia malayi]
gi|158595136|gb|EDP33709.1| Succinate dehydrogenase cytochrome b560 subunit,
mitochondrialprecursor, putative [Brugia malayi]
Length = 188
Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RP+SPHL +Y+ T VS HR+TG + GT ++ F + ++ ++ G
Sbjct: 52 KRPISPHLAVYKPQVTWMVSGFHRMTGCAM-AGTLLIGGVGFALL--PLNFTTFIDFIRG 108
Query: 67 -----SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
+ ++ F+ + + H L GIR++ +D++L D
Sbjct: 109 LGLPWVITDIFKFIIAYPIAFHSLNGIRFIAFDLALGTD 147
>gi|206562822|ref|YP_002233585.1| putative succinate dehydrogenase cytochrome b556 subunit
[Burkholderia cenocepacia J2315]
gi|198038862|emb|CAR54824.1| putative succinate dehydrogenase cytochrome b556 subunit
[Burkholderia cenocepacia J2315]
Length = 138
Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YR+ +SI+HR++G++++L P ++F F E + + ++ V ++ +
Sbjct: 24 YRMPLAAILSILHRVSGALLFLFLPFLLFLFDQSLTSELSFEVFKAFLSNIVVKLIVLAL 83
Query: 77 TWAVIHHMLGGIRYLIWDVS 96
+WA HH GIR+L+ DV+
Sbjct: 84 SWAFFHHFCAGIRHLLMDVN 103
>gi|29418059|gb|AAO39685.1| succinate dehydrogenase cytochrome b-556 subunit [Enterobacter
cloacae]
Length = 159
Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ L+ R T SI+HR++G + ++ +++ W +LSS
Sbjct: 34 NVKKQRPVNLDLKTIRFPVTAIASILHRVSGVITFVAVGILL-WLLGT-----SLSSPEG 87
Query: 63 YMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDVSLCLD-----KKIATQMAKIN 111
++ S F+ W ++ +H++ G+R+++ D + K+ A I
Sbjct: 88 FLQASAIMNSFFVKFIMWGILTALAYHVVVGVRHMLMDFGYLEETFEAGKRSANISFVIT 147
Query: 112 IIASILTVLIVW 123
++ S+L ++VW
Sbjct: 148 VVLSLLAGVLVW 159
>gi|323332726|gb|EGA74131.1| Sdh3p [Saccharomyces cerevisiae AWRI796]
Length = 194
Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG------- 53
++ + RP+SPHL IY+ T ++S HRI S+V +G + F+ F I G
Sbjct: 64 LNKQRAKRPISPHLTIYQPQLTWYLSSFHRI--SLVLMG---LGFYLFTILFGVSGLLGL 118
Query: 54 EHTLSSLRCYMDGSVFEVCL------FLYTWAVIHHMLGGIRYLIWDVS--LCLDKKIAT 105
T + + ++ F Y +A+ H G IR+LIWD + L L T
Sbjct: 119 GLTTEKVSNWYHQKFSKITEWSIKGSFAYLFAI--HYGGAIRHLIWDTAKELTLKGVYRT 176
Query: 106 QMAKINIIASILTVLIV 122
A I A + T L+
Sbjct: 177 GYALIGFTAVLGTYLLT 193
>gi|260946711|ref|XP_002617653.1| hypothetical protein CLUG_03097 [Clavispora lusitaniae ATCC 42720]
gi|238849507|gb|EEQ38971.1| hypothetical protein CLUG_03097 [Clavispora lusitaniae ATCC 42720]
Length = 180
Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFCIANGE 54
+ NRP+SPHL IY+ T +S +HR+TG +V Y T ++ F A+
Sbjct: 55 RKNRPVSPHLDIYKPQLTWLLSGLHRLTGVGMAGAFYGLTVTYAATSLLSVPFDS-ASIV 113
Query: 55 HTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWD 94
+SL + Y +A H GIR+L+WD
Sbjct: 114 TAFASLP--FAAKLGAKIAMAYPFAF--HFFNGIRHLVWD 149
>gi|24050819|gb|AAN42220.1| succinate dehydrogenase, cytochrome b556 [Shigella flexneri 2a str.
301]
gi|30040361|gb|AAP16093.1| succinate dehydrogenase, cytochrome b556 [Shigella flexneri 2a str.
2457T]
Length = 134
Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++ W +LSS
Sbjct: 9 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILQ-WLLGT-----SLSSPEG 62
Query: 63 YMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDVSLCLDK-KIATQMAKIN---- 111
+ S F+ W ++ +H++ GIR+++ D + + + AKI+
Sbjct: 63 FEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVIT 122
Query: 112 IIASILTVLIVW 123
++ S+L ++VW
Sbjct: 123 VVLSLLAGVLVW 134
>gi|304415184|ref|ZP_07395899.1| succinate dehydrogenase membrane subunit 1 that binds cytochrome
b556 [Candidatus Regiella insecticola LSR1]
gi|304282966|gb|EFL91414.1| succinate dehydrogenase membrane subunit 1 that binds cytochrome
b556 [Candidatus Regiella insecticola LSR1]
Length = 129
Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ +L + SI+HR++G + ++ ++++ +
Sbjct: 5 LKKQRPINLDLQTIQLPVSALASILHRVSGVITFVAVGILLWLLGLSLSSPEGFMQAATI 64
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV-----SLCLDKKIATQMAKINIIASILT 118
+ V + + A+ +H+ GGIR+L+ D SL + A + + ++ SIL
Sbjct: 65 LSSIVAKFIFWGILTALAYHICGGIRHLLMDFGYIPESLTAGTRSAQVVIGLTLVLSILA 124
Query: 119 VLIVW 123
+ +W
Sbjct: 125 GVFLW 129
>gi|83815294|ref|YP_444632.1| putative succinate dehydrogenase membrane subunit [Salinibacter
ruber DSM 13855]
gi|83756688|gb|ABC44801.1| putative succinate dehydrogenase membrane subunit [Salinibacter
ruber DSM 13855]
Length = 164
Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 16/107 (14%)
Query: 1 MSSIKNNRPLSPH-----------LQIYRLIPTMFVSIVHRITGS--VVYLGTPVVVFWF 47
M+ RP +P Q YR+ MF ++HR+TG VVYL +V W
Sbjct: 12 MAVDTKERPSAPQETNATAEQESRFQSYRIRTGMFAWMMHRLTGVGLVVYL---IVHIWG 68
Query: 48 FCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWD 94
T ++L +F+V F AV +H + G+R ++ D
Sbjct: 69 LTALTDPETFNALIAKYHSPIFKVGEFALLVAVAYHAMNGLRLVLID 115
>gi|323304156|gb|EGA57933.1| Sdh3p [Saccharomyces cerevisiae FostersB]
Length = 198
Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG------- 53
++ + RP+SPHL IY+ T ++S HRI S+V +G + F+ F I G
Sbjct: 68 LNKQRAKRPISPHLTIYQPQLTWYLSSXHRI--SLVLMG---LGFYLFTILFGVSGLLGL 122
Query: 54 EHTLSSLRCYMDGSVFEVCL------FLYTWAVIHHMLGGIRYLIWDVS--LCLDKKIAT 105
T + + ++ F Y +A+ H G IR+LIWD + L L T
Sbjct: 123 GLTTEKVSNWYHQKFSKITEWSIKGSFAYLFAI--HYGGAIRHLIWDTAKELTLKGVYRT 180
Query: 106 QMAKINIIASILTVLIV 122
A I A + T L+
Sbjct: 181 GYALIGFTAVLGTYLLT 197
>gi|29420823|dbj|BAC66633.1| succinate dehydrogenase cytochrome b560 subunit [Coprinopsis
cinerea]
Length = 179
Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWF---FCIANG----EHTLSS 59
RP SPH IY+ T SI +R+TG+ G V+++ F + IA G H +
Sbjct: 58 KRPSSPHFTIYQPQLTWLGSIANRVTGA----GLSVLLYGFSIAYLIAPGTFDSAHVVEF 113
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIA 104
+ DG + L +H G+R+L WD L K A
Sbjct: 114 VAGLPDGVKYAGKAILAA-PFSYHAWNGLRHLAWDAGKFLSVKGA 157
>gi|260776543|ref|ZP_05885438.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio
coralliilyticus ATCC BAA-450]
gi|260607766|gb|EEX34031.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio
coralliilyticus ATCC BAA-450]
Length = 130
Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ T SI+HR++G + ++ ++++ + + +
Sbjct: 8 RKSRPVNLDLQTINFPITAIASILHRVSGVITFVAIGILLWLLSISLSSPVGYAQAVDIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA----SILTVL 120
DG + L+ A+ +H+ GGIR+L+ D+ + + AK+ A S+L +
Sbjct: 68 DGFFVKFILWGILTALAYHIAGGIRHLLMDLGHFEELESGAMSAKVAFAATAVLSVLAGI 127
Query: 121 IVW 123
+VW
Sbjct: 128 LVW 130
>gi|207343604|gb|EDZ71023.1| YKL141Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 198
Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG------- 53
++ + RP+SPHL IY+ T ++S HRI S+V +G + F+ F I G
Sbjct: 68 LNKQRAKRPISPHLTIYQPQLTWYLSSFHRI--SLVLMG---LGFYLFTILFGVSGLLGL 122
Query: 54 EHTLSSLRCYMDGSVFEVCL------FLYTWAVIHHMLGGIRYLIWDVS--LCLDKKIAT 105
T + + ++ F Y +A+ H G IR+LIWD + L L T
Sbjct: 123 GLTTEKVSNWYHQKFSKITEWSIKGSFAYLFAI--HYGGAIRHLIWDTAKELTLKGVYRT 180
Query: 106 QMAKINIIASILTVLIV 122
A I A + T L+
Sbjct: 181 GYALIGFTAVLGTYLLT 197
>gi|299750219|ref|XP_001836610.2| succinate dehydrogenase cytochrome b560 subunit [Coprinopsis
cinerea okayama7#130]
gi|298408800|gb|EAU85181.2| succinate dehydrogenase cytochrome b560 subunit [Coprinopsis
cinerea okayama7#130]
Length = 178
Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWF---FCIANG----EHTLSS 59
RP SPH IY+ T SI +R+TG+ G V+++ F + IA G H +
Sbjct: 57 KRPSSPHFTIYQPQLTWLGSIANRVTGA----GLSVLLYGFSIAYLIAPGTFDSAHVVEF 112
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIA 104
+ DG + L +H G+R+L WD L K A
Sbjct: 113 VAGLPDGVKYAGKAILAA-PFSYHAWNGLRHLAWDAGKFLSVKGA 156
>gi|115400139|ref|XP_001215658.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114191324|gb|EAU33024.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 188
Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 23/110 (20%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFF----CIAN 52
NRP+SPHL IYR T + S +RITG + YL P + W A
Sbjct: 65 NRPVSPHLTIYRPQITWYASAFNRITGVALSGGMYVFATAYLAAP-LFGWHLESASLAAA 123
Query: 53 GEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ + + G++ F H + G+R+L+WD+ + +
Sbjct: 124 FAALPIAAKVLLKGTIAFPFAF--------HCMNGVRHLVWDMGRGITNQ 165
>gi|261202338|ref|XP_002628383.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
dermatitidis SLH14081]
gi|239590480|gb|EEQ73061.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
dermatitidis SLH14081]
gi|239612206|gb|EEQ89193.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
dermatitidis ER-3]
gi|327353150|gb|EGE82007.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
dermatitidis ATCC 18188]
Length = 187
Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFCIANGEHT 56
NRP+SPHL IY+ T +S ++RITG + YL +P ++ W A+
Sbjct: 64 NRPVSPHLSIYQPQITWLLSSLNRITGVALAGGMYIFASAYLVSP-LLGWHLESASLVAA 122
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+L + +T+ H G R+LIWD+ K
Sbjct: 123 FGALPLAAKVGLKFTAALPFTF----HSFNGCRHLIWDMGKQFSNK 164
>gi|190409697|gb|EDV12962.1| succinate dehydrogenase cytochrome b [Saccharomyces cerevisiae
RM11-1a]
gi|259147700|emb|CAY80950.1| Sdh3p [Saccharomyces cerevisiae EC1118]
Length = 198
Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG------- 53
++ + RP+SPHL IY+ T ++S HRI S+V +G + F+ F I G
Sbjct: 68 LNKQRAKRPISPHLTIYQPQLTWYLSSFHRI--SLVLMG---LGFYLFTILFGVSGLLGL 122
Query: 54 EHTLSSLRCYMDGSVFEVCL------FLYTWAVIHHMLGGIRYLIWDVS--LCLDKKIAT 105
T + + ++ F Y +A+ H G IR+LIWD + L L T
Sbjct: 123 GLTTEKVSNWYHQKFSKITEWSIKGSFAYLFAI--HYGGAIRHLIWDTAKELTLKGVYRT 180
Query: 106 QMAKINIIASILTVLIV 122
A I A + T L+
Sbjct: 181 GYALIGFTAVLGTYLLT 197
>gi|27363644|ref|NP_759172.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio vulnificus CMCP6]
gi|37679212|ref|NP_933821.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio vulnificus YJ016]
gi|27359760|gb|AAO08699.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio vulnificus
CMCP6]
gi|37197955|dbj|BAC93792.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio vulnificus
YJ016]
Length = 130
Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 8 RKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSISLSSPVGFMEASDIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA----SILTVL 120
D + L+ A+ +H+ GGIR+L+ D+ + + AK+ A S+L +
Sbjct: 68 DSFFVKFILWGILTALAYHIAGGIRHLMMDLGHFEELESGAMSAKVAFAATAVLSLLAGI 127
Query: 121 IVW 123
+VW
Sbjct: 128 LVW 130
>gi|308050201|ref|YP_003913767.1| succinate dehydrogenase subunit C [Ferrimonas balearica DSM 9799]
gi|307632391|gb|ADN76693.1| succinate dehydrogenase subunit C [Ferrimonas balearica DSM 9799]
Length = 125
Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE-HTLSSLRC 62
+ RP+ LQ + T SI+HR++G ++++ + V+ W + G +++
Sbjct: 1 MNKQRPVYLDLQQIQFPATAIASILHRVSGVILFV-SIAVLLWLLATSLGSAQGFATVSE 59
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV-----SLCLDKKIATQMAKINIIASIL 117
M+ + + ++ A+ +H GGIR+L+ D+ S+ A I +I S++
Sbjct: 60 IMNSLIAKFVVWGILTALAYHFCGGIRHLLMDMGHFEGSMESGNNSARAAMAITVILSVI 119
Query: 118 TVLIVW 123
+ +W
Sbjct: 120 AGIWLW 125
>gi|151941666|gb|EDN60028.1| succinate dehydrogenase cytochrome b [Saccharomyces cerevisiae
YJM789]
Length = 198
Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG------- 53
++ + RP+SPHL IY+ T ++S HRI S+V +G + F+ F I G
Sbjct: 68 LNKQRAKRPISPHLTIYQPQLTWYLSSFHRI--SLVLMG---LGFYLFTILFGVSGLLGL 122
Query: 54 EHTLSSLRCYMDGSVFEVCL------FLYTWAVIHHMLGGIRYLIWDVS--LCLDKKIAT 105
T + + ++ F Y +A+ H G IR+LIWD + L L T
Sbjct: 123 GLTTEKVSNWYHQKFSKITEWSIKGSFAYLFAI--HYGGAIRHLIWDTAKELTLKGVYRT 180
Query: 106 QMAKINIIASILTVLIV 122
A I A + T L+
Sbjct: 181 GYALIGFTAVLGTYLLT 197
>gi|325123218|gb|ADY82741.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
calcoaceticus PHEA-2]
Length = 120
Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 21 PTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC--YMDGSVF-----EVCL 73
P SI+HR++G +V+L PV++ W + +LSS Y+ VF +
Sbjct: 12 PVAIASILHRLSGVIVFLLVPVLL-WIL-----DKSLSSPEGFDYVKNVVFGNILVRFVV 65
Query: 74 FLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL--IVWII 125
+++ +I H + G+++L+ D+ + + A I++I S++ ++ VWI+
Sbjct: 66 WVFAAGLIFHFIAGVKHLLADLGFAEELQSGRIAATISLILSVVAIIAAFVWIM 119
>gi|261187750|ref|XP_002620293.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
dermatitidis SLH14081]
gi|239593506|gb|EEQ76087.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
dermatitidis SLH14081]
Length = 188
Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIAN---GEHTLSSLRCY 63
NRP+SP+L IYR T +SI+HR TG +V G +F+ +A+ G H S+
Sbjct: 52 NRPISPNLTIYRPQVTSVLSILHRNTGLLVSGG--FYLFFAVYLASPWLGWHIDSASMAA 109
Query: 64 MDGS--VFEVCLFLYTWAV--IHHMLGGIRYLIWDVSLCLDK 101
G+ V L T A+ H G+R+LIW LD
Sbjct: 110 SFGALPVAAKVLLRTTVALPFTFHSFNGVRHLIWVAMNNLDS 151
>gi|195111348|ref|XP_002000241.1| GI22631 [Drosophila mojavensis]
gi|193916835|gb|EDW15702.1| GI22631 [Drosophila mojavensis]
Length = 229
Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 26/114 (22%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K R LSPHL IYR T +SI R +G+ + L W L++L
Sbjct: 48 KNMKLGRALSPHLTIYRKQLTSVMSIFLRASGATLGL-----AVWII-------GLTALL 95
Query: 62 CYMD--------------GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK 101
C +D G F F+ +H++ G R+LIW +++ L K
Sbjct: 96 CKLDINAMAEKVEALNLGGVTFTALKFILMVPFSYHVMAGTRHLIWYLNMFLTK 149
>gi|329120253|ref|ZP_08248921.1| succinate dehydrogenase cytochrome b558 subunit [Neisseria
bacilliformis ATCC BAA-1200]
gi|327462594|gb|EGF08917.1| succinate dehydrogenase cytochrome b558 subunit [Neisseria
bacilliformis ATCC BAA-1200]
Length = 127
Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 25 VSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHM 84
VSI+HR +G +++L PV++ + + +S + + ++ L WA +HH+
Sbjct: 25 VSILHRASGVIMFLMVPVLLMLLDGSLSSGESFASYKAVASHPLVKLILIGVLWAFLHHL 84
Query: 85 LGGIRYLIWDVSLCLDKKIATQMAKINIIASI-LTVLI 121
GIR+L D +D + + AK+ + S+ LTV++
Sbjct: 85 CAGIRFLFLDAHKGVDLQTCRKTAKLVLAVSLSLTVIL 122
>gi|323308340|gb|EGA61586.1| Sdh3p [Saccharomyces cerevisiae FostersO]
Length = 194
Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 20/115 (17%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG------- 53
++ + RP+SPHL IY+ T ++S HRI S+V +G + F+ F I G
Sbjct: 64 LNKQRAKRPISPHLTIYQPQLTWYLSSFHRI--SLVLMG---LGFYLFTILFGVSGLLGL 118
Query: 54 EHTLSSLRCYMDGSVFEVCL------FLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
T + + ++ F Y +A+ H G IR+LIWD + L K
Sbjct: 119 GLTTEKVSNWYHQKFSKITEWSIKGSFAYLFAI--HYGGAIRHLIWDTAKELTLK 171
>gi|167627193|ref|YP_001677693.1| succinate dehydrogenase, cytochrome b556 [Francisella philomiragia
subsp. philomiragia ATCC 25017]
gi|167597194|gb|ABZ87192.1| succinate dehydrogenase, cytochrome b556 [Francisella philomiragia
subsp. philomiragia ATCC 25017]
Length = 126
Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M I N +S ++ Y+ T SI+HRI+G V+ P+ V G
Sbjct: 1 MKKITNVDLMS--IKSYKFPITAISSILHRISGVVLIFAIPLAVVGMNYTLAGPDGYQQT 58
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ G + +L+ ++ +H+ G+R++I D+ K A + + II +L+ +
Sbjct: 59 VAVLTGGWCSIFFWLFLSSITYHVFAGVRHMIMDMGFGESMKAAKITSLLVIILGVLSAI 118
Query: 121 I 121
+
Sbjct: 119 L 119
>gi|134094984|ref|YP_001100059.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Herminiimonas arsenicoxydans]
gi|133738887|emb|CAL61934.1| Succinate dehydrogenase cytochrome b556 subunit (Cytochrome b-556)
[Herminiimonas arsenicoxydans]
Length = 136
Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
S+K +P ++ I YR+ VSI+HRI+G++++L PV++ E +
Sbjct: 3 DSLKTGKPQFRNINIADLVHYRMPLAAIVSIMHRISGALIFLLLPVILLLLDKSLMSEIS 62
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ ++ + WA +HH GIR+L DV + +DK + A I + S+
Sbjct: 63 FEHFKGIASHWFVKLIILALVWAYLHHFCAGIRHLFADVHVGVDKVKGRKSAVIVLAISL 122
Query: 117 -LTVLIV 122
LT L+
Sbjct: 123 PLTALVA 129
>gi|325525107|gb|EGD02998.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
TJI49]
Length = 138
Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YR+ +SI+HR++G++++L P ++F F E + + ++ V ++ +
Sbjct: 24 YRMPLAAKLSILHRVSGALLFLFLPFLLFLFDQSLTSELSFEVFKAFLSNIVVKLIVLAL 83
Query: 77 TWAVIHHMLGGIRYLIWDVS 96
+WA HH GIR+L+ DV+
Sbjct: 84 SWAFFHHFCAGIRHLLMDVN 103
>gi|256269924|gb|EEU05182.1| Sdh3p [Saccharomyces cerevisiae JAY291]
Length = 198
Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG------- 53
++ + RP+SPHL IY+ T ++S HRI S+V +G + F+ F I G
Sbjct: 68 LNKQRARRPISPHLTIYQPQLTWYLSSFHRI--SLVLMG---LGFYLFTILFGVSGLLGL 122
Query: 54 EHTLSSLRCYMDGSVFEVCL------FLYTWAVIHHMLGGIRYLIWDVS--LCLDKKIAT 105
T + + ++ F Y +A+ H G IR+LIWD + L L T
Sbjct: 123 GLTTEKVSNWYHQKFSKITEWSIKGSFAYLFAI--HYGGAIRHLIWDTAKELTLKGVYRT 180
Query: 106 QMAKINIIASILTVLIV 122
A I A + T L+
Sbjct: 181 GYALIGFTAVLGTYLLT 197
>gi|77360592|ref|YP_340167.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
sdhD [Pseudoalteromonas haloplanktis TAC125]
gi|76875503|emb|CAI86724.1| putative succinate dehydrogenase, hydrophobic subunit, cytochrome
b556 with sdhD [Pseudoalteromonas haloplanktis TAC125]
Length = 125
Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVF-WFFCIANGEHTLSSLRC 62
+K RP++ L + T SI HR+TG ++ V++ W +++ E ++
Sbjct: 1 MKKQRPVNLDLTTISMPATAKASIFHRVTGVALFFALTFVIWAWSESLSSAE-GFEFVKG 59
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI- 121
+G + + + + +H++GGIR++I D+ + + AKI + ++ ++
Sbjct: 60 LFNGFIAKFIAWGTVSVLGYHLIGGIRHMIMDMGHWEELESGNLSAKIAMALGVVFAVLA 119
Query: 122 -VWI 124
VWI
Sbjct: 120 GVWI 123
>gi|170726186|ref|YP_001760212.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella woodyi
ATCC 51908]
gi|169811533|gb|ACA86117.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella woodyi
ATCC 51908]
Length = 124
Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/123 (19%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP+ LQ R T SI+HR++G ++ ++++ + + ++
Sbjct: 1 MKKKRPVHLDLQTIRFPATAIASILHRVSGVIMLFAVGILIWLLNESLASPESFAGIQSL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLC--LDKKIATQMAKINIIASILTVLI 121
D + + ++ A+ +H++ G+R+L+ D L IA+ + A+ ++
Sbjct: 61 FDNLLVKFVIWGILTALGYHLIVGLRHLVMDTGRWEELASGIASAKVAFALSAAFSIIVG 120
Query: 122 VWI 124
+W+
Sbjct: 121 IWV 123
>gi|118485781|gb|ABK94739.1| unknown [Populus trichocarpa]
Length = 282
Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE-----HTLSSLRC 62
RPLSPHL IY SIV+RI+G+ YL V+ F C+ G +
Sbjct: 194 RPLSPHLPIYSPQVHSTFSIVNRISGA--YLSALVLFFCLICLKAGSICFTHYNFYQFLF 251
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLI 92
Y + V A+ +H+ G+R+L+
Sbjct: 252 YSSKLILPVVDVTAALALTYHLFYGVRHLL 281
>gi|126740505|ref|ZP_01756192.1| Succinate dehydrogenase cytochrome b-556 subunit [Roseobacter sp.
SK209-2-6]
gi|126718306|gb|EBA15021.1| Succinate dehydrogenase cytochrome b-556 subunit [Roseobacter sp.
SK209-2-6]
Length = 103
Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%)
Query: 26 SIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHML 85
SI+ RITG+ + + +VV+W A + + L L T + +H L
Sbjct: 3 SILTRITGNALIIAVIMVVWWLLAAATSAEYFELANGLLTSWFGRIVLLLSTLGIWYHFL 62
Query: 86 GGIRYLIWDVSLCLDKKIATQMA 108
G+R+L +D LD + A ++
Sbjct: 63 AGLRHLYFDAGHGLDIETAEKLG 85
>gi|240277715|gb|EER41223.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
capsulatus H143]
Length = 187
Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 17/107 (15%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFCIANGEHT 56
NRP+SPHL IY+ T +S +RITG + YL P ++ W A+
Sbjct: 64 NRPVSPHLSIYQPQITWILSSTNRITGVALSGGLYIFASAYLVAP-LLGWHLESASIAAA 122
Query: 57 LSSLRCYMDGSVFEVCL-FLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ L + CL F H G R+L+WD+ K
Sbjct: 123 FAGLPL-----AAKFCLKFAAALPFTFHSFNGCRHLVWDMGKQFTNK 164
>gi|184159280|ref|YP_001847619.1| succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Acinetobacter baumannii ACICU]
gi|213157653|ref|YP_002320451.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii AB0057]
gi|215482489|ref|YP_002324675.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii AB307-0294]
gi|239502289|ref|ZP_04661599.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii AB900]
gi|301512217|ref|ZP_07237454.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii AB058]
gi|301595936|ref|ZP_07240944.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii AB059]
gi|183210874|gb|ACC58272.1| Succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Acinetobacter baumannii ACICU]
gi|213056813|gb|ACJ41715.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii AB0057]
gi|213987074|gb|ACJ57373.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii AB307-0294]
gi|322509193|gb|ADX04647.1| sdhC [Acinetobacter baumannii 1656-2]
gi|323519221|gb|ADX93602.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii TCDC-AB0715]
Length = 120
Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 21 PTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC--YMDGSVF-----EVCL 73
P SI+HR++G +V+L PV++ W + +LSS Y+ VF +
Sbjct: 12 PVAIASILHRLSGVIVFLLVPVLL-WIL-----DKSLSSPEGFDYVKNVVFGNILVRFVV 65
Query: 74 FLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL--IVWII 125
+++ +I H + G+++L+ D+ + + A I++I S++ ++ VWI+
Sbjct: 66 WVFVAGLIFHFIAGVKHLLADLGFAEELQSGRIAATISLILSVVAIIAAFVWIM 119
>gi|78062999|ref|YP_372907.1| succinate dehydrogenase subunit C [Burkholderia sp. 383]
gi|77970884|gb|ABB12263.1| succinate dehydrogenase subunit C [Burkholderia sp. 383]
Length = 138
Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YR+ +SI+HR++G++++L P ++F F E + + ++ + ++ +
Sbjct: 24 YRMPLAAILSILHRVSGALLFLFLPFLLFLFDQSLTSELSFEGFKQFLSNIIVKLIVLAL 83
Query: 77 TWAVIHHMLGGIRYLIWDVS 96
+WA HH GIR+L+ DV+
Sbjct: 84 SWAFFHHFCAGIRHLLMDVN 103
>gi|325093799|gb|EGC47109.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
capsulatus H88]
Length = 187
Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 17/107 (15%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFCIANGEHT 56
NRP+SPHL IY+ T +S +RITG + YL P ++ W A+
Sbjct: 64 NRPVSPHLSIYQPQITWILSSTNRITGVALSGSLYIFASAYLVAP-LLGWHLESASIAAA 122
Query: 57 LSSLRCYMDGSVFEVCL-FLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ L + CL F H G R+L+WD+ K
Sbjct: 123 FAGLPL-----AAKFCLKFAAALPFTFHSFNGCRHLVWDMGKQFTNK 164
>gi|225557168|gb|EEH05455.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
capsulatus G186AR]
Length = 187
Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 17/107 (15%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFCIANGEHT 56
NRP+SPHL IY+ T +S +RITG + YL P ++ W A+
Sbjct: 64 NRPVSPHLSIYQPQITWILSSTNRITGVALSGGLYIFASAYLVAP-LLGWHLESASIAAA 122
Query: 57 LSSLRCYMDGSVFEVCL-FLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ L + CL F H G R+L+WD+ K
Sbjct: 123 FAGLPL-----AAKFCLKFAAALPFTFHSFNGCRHLVWDMGKQFTNK 164
>gi|71892105|ref|YP_277837.1| succinate dehydrogenase cytochrome b-556 subunit [Candidatus
Blochmannia pennsylvanicus str. BPEN]
gi|71796211|gb|AAZ40962.1| succinate dehydrogenase cytochrome b-556 subunit [Candidatus
Blochmannia pennsylvanicus str. BPEN]
Length = 135
Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVY--LGTPVVVFWFFCIANGEHTLSSLRC 62
KN RP+ +++ R T SI+HRI+G +++ +G + + +N E
Sbjct: 4 KNQRPIYLNIRTIRFPITAITSILHRISGILLFIIIGPILWILKLSLSSNNEFCKIHRFL 63
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-----KIATQMAKI-NIIASI 116
M+ +F+ + T + +H++ GIR ++ D CL++ KI+ ++ + I+ SI
Sbjct: 64 LMNHYIFQFVFWTVTILLSYHIIAGIRQILMDFG-CLNQTLLIGKISAKVVFVLTILLSI 122
Query: 117 LTVLIVW 123
+++W
Sbjct: 123 FIGILIW 129
>gi|2239247|emb|CAA74085.1| SdhC protein [Shewanella frigidimarina NCIMB 400]
Length = 110
Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 21 PTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAV 80
T SI+HRI+G ++ ++++ +S++ DG V + ++ A+
Sbjct: 4 ATRIASILHRISGVIMLFAIGILLWLLNSTLTSADGFASVQSLFDGFVMKFIIWGILTAL 63
Query: 81 IHHMLGGIRYLIWDVSLCLDKKIATQMAK----INIIASILTVLIVW 123
+H+LGGIR+LI D + AK + ++ SI+ + VW
Sbjct: 64 GYHLLGGIRHLIMDAGHWEELASGVSSAKATFVLAVVFSIIAGIWVW 110
>gi|209954769|dbj|BAG80575.1| succinate dehydrogenase C subunit [Aspergillus oryzae]
gi|209954771|dbj|BAG80576.1| succinate dehydrogenase C subunit [Aspergillus oryzae]
Length = 188
Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 23/110 (20%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFCIANGEHT 56
NRP+SPHL IYR T S HRI G + YL +P ++ W A+
Sbjct: 65 NRPVSPHLSIYRPQITWIGSSFHRIIGFALSGSLYLYATAYLASP-LLGWHLESASVAAA 123
Query: 57 LSSL----RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
++L + + G F F Y H G+R+L+WD+ + +
Sbjct: 124 FAALPIVAKVLLKG--FMALPFTY------HCFNGVRHLVWDLGRGITNQ 165
>gi|29420825|dbj|BAC66634.1| succinate dehydrogenase cytochrome b560 subunit [Coprinopsis
cinerea]
Length = 179
Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWF---FCIANG----EHTLSS 59
RP SPH IY+ T SI R+TG+ G V+++ F + IA G H +
Sbjct: 58 KRPSSPHFTIYQPQLTWLGSIAKRVTGA----GLSVLLYGFSIAYLIAPGTFDSAHVVEF 113
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIA 104
+ DG + L +H G+R+L WD L K A
Sbjct: 114 VAGLPDGVKYAGKAILAA-PFSYHAWNGLRHLAWDAGKFLSVKGA 157
>gi|195452048|ref|XP_002073190.1| GK13994 [Drosophila willistoni]
gi|194169275|gb|EDW84176.1| GK13994 [Drosophila willistoni]
Length = 230
Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT-PVVVFWFFCIAN-GEHTLSSLRCYMD 65
R LSP L IY+ T +SI R+TG + L V + FF + G+ C
Sbjct: 30 RHLSPCLSIYKRELTSVMSISLRMTGFFLALCVWAVGILGFFGTRSLGDWAAKLEECDCK 89
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
S+ F+ + +H++ G R+L+W ++ L K Q+ +A L+VL+
Sbjct: 90 RSIVNAAKFMLVFPFSYHLVAGARHLLWHFNIFLTKP---QIYATGYVALALSVLLT 143
>gi|163802540|ref|ZP_02196432.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio sp. AND4]
gi|159173623|gb|EDP58442.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio sp. AND4]
Length = 130
Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 8 RKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSVSLSSPIGFLEAADIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA----SILTVL 120
D + L+ A+ +H+ GG+R+L+ D+ + + AK+ A S+L +
Sbjct: 68 DSFFVKFILWGILSALAYHIAGGVRHLLMDLGHFEELESGAMSAKVTFGATAVLSLLAGI 127
Query: 121 IVW 123
+VW
Sbjct: 128 LVW 130
>gi|239613339|gb|EEQ90326.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
dermatitidis ER-3]
Length = 278
Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIAN---GEHTLSSLRCY 63
NRP+SP+L IYR T +SI+HR TG +V G +F+ +A+ G H S+
Sbjct: 124 NRPISPNLTIYRPQVTSVLSILHRNTGLLVSGG--FYLFFAVYLASPWLGWHIDSASMAA 181
Query: 64 MDGS--VFEVCLFLYTWAV--IHHMLGGIRYLIW 93
G+ V L T A+ H G+R+LIW
Sbjct: 182 SFGALPVAAKVLLRTTVALPFTFHSFNGVRHLIW 215
>gi|319762655|ref|YP_004126592.1| succinate dehydrogenase, cytochrome b556 subunit [Alicycliphilus
denitrificans BC]
gi|330824796|ref|YP_004388099.1| succinate dehydrogenase, cytochrome b556 subunit [Alicycliphilus
denitrificans K601]
gi|317117216|gb|ADU99704.1| succinate dehydrogenase, cytochrome b556 subunit [Alicycliphilus
denitrificans BC]
gi|329310168|gb|AEB84583.1| succinate dehydrogenase, cytochrome b556 subunit [Alicycliphilus
denitrificans K601]
Length = 143
Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPT------MFVSIVHRITGSVVYLGTPVVVFWFFCIANGE 54
M+ + RP ++ ++ +P+ VS +HRI+G +++L P +++ F + E
Sbjct: 1 MTQLAKKRPEFRNIHAFKDLPSYRWPLAALVSGMHRISGLILFLLLPFIIWLFDKSVSSE 60
Query: 55 HTLSSL-RCYMDGSVF------EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQM 107
+ S + G F ++ + W+ +HH+ G+R+L+ DV+ K
Sbjct: 61 ISFGSFTAAFTTGIGFVPAWFVKLVVLALIWSYLHHLAAGVRHLVLDVTHKTTKDFGRHS 120
Query: 108 AKINIIASILTVLIV 122
A ++ SI+ +I+
Sbjct: 121 AAATLVFSIMLTVIL 135
>gi|161522866|ref|YP_001585795.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
multivorans ATCC 17616]
gi|189348299|ref|YP_001941495.1| succinate dehydrogenase cytochrome b-556 subunit [Burkholderia
multivorans ATCC 17616]
gi|160346419|gb|ABX19503.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
multivorans ATCC 17616]
gi|189338437|dbj|BAG47505.1| succinate dehydrogenase cytochrome b-556 subunit [Burkholderia
multivorans ATCC 17616]
Length = 138
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YR+ +SI+HR++G++++L P ++F F E + + ++ V ++ +
Sbjct: 24 YRMPLAAILSILHRVSGALLFLFLPFLLFLFDQSLTSELSFEVFKQFLSNIVVKLIVLAL 83
Query: 77 TWAVIHHMLGGIRYLIWDVS 96
+WA HH GIR+L+ DV+
Sbjct: 84 SWAFFHHFCAGIRHLLMDVN 103
>gi|56479264|ref|YP_160853.1| succinate dehydrogenase cytochrome b-556 subunit [Aromatoleum
aromaticum EbN1]
gi|56315307|emb|CAI09952.1| Succinate dehydrogenase cytochrome b-556 subunit (EC 1.3.99.1)
[Aromatoleum aromaticum EbN1]
Length = 129
Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
++ RP L RL FVSI+HR++G+ ++L P ++F F + + +
Sbjct: 6 VRKQRPKFLALHEIRLPLPGFVSILHRVSGAGLFLMLPFLLFLFDRSLGSPESFETYKSV 65
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + ++ L WA +HH GIR+L+ D++ D K A ++I ++ SI +I+
Sbjct: 66 VANPLAKLLLLGLLWAYLHHFCAGIRFLLLDLNKGTDLKSARNSSRIVLVVSIALTIIIG 125
Query: 124 I 124
+
Sbjct: 126 V 126
>gi|307545706|ref|YP_003898185.1| succinate dehydrogenase, cytochrome b subunit [Halomonas elongata
DSM 2581]
gi|307217730|emb|CBV43000.1| succinate dehydrogenase, cytochrome b subunit [Halomonas elongata
DSM 2581]
Length = 125
Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L + SI HRITG ++++G ++F F+ + +
Sbjct: 1 MNSKRPVNLDLSTIQFPLPALTSIAHRITGVILFIG---LIFGFWALDASLSSAEGFASV 57
Query: 64 MDGSVFEVCLFLYTW----AVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
L W A+ H + GI++L+ D+ + + + + A+I + S + +
Sbjct: 58 QHALAHNFLAKLIAWGLLSALAFHFVAGIKHLLMDIDIGVTLEGGVKKAQITVAVSAVLI 117
Query: 120 LI--VWI 124
++ VW+
Sbjct: 118 ILAGVWV 124
>gi|311280404|ref|YP_003942635.1| succinate dehydrogenase, cytochrome b556 subunit [Enterobacter
cloacae SCF1]
gi|308749599|gb|ADO49351.1| succinate dehydrogenase, cytochrome b556 subunit [Enterobacter
cloacae SCF1]
Length = 134
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ ++K RP++ L R T SI+HR++G + ++ +++ W +LSS
Sbjct: 7 IKNVKKQRPVNLDLTTIRFPVTAIASILHRVSGVITFVAVGILL-WLLGT-----SLSSP 60
Query: 61 RCYMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDVSLCLDK-KIATQMAKIN-- 111
++ + F+ W ++ +H + GIR+L+ D + + T+ AKI+
Sbjct: 61 EGFLVATSIMSSFFVKFIVWGILTALAYHAVVGIRHLLMDFGYLEETLEAGTRSAKISFV 120
Query: 112 --IIASILTVLIVW 123
++ S+L ++VW
Sbjct: 121 ITVVLSLLAGVLVW 134
>gi|153835343|ref|ZP_01988010.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio harveyi
HY01]
gi|148868134|gb|EDL67293.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio harveyi
HY01]
Length = 130
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 8 RKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSISLSSPMGFMEAADIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA----SILTVL 120
D + L+ A+ +H+ GG+R+L+ D+ + + AK+ A S+L +
Sbjct: 68 DSFFVKFILWGILTALAYHIAGGVRHLLMDLGHFEELESGAMSAKVAFGATAVLSLLAGI 127
Query: 121 IVW 123
+VW
Sbjct: 128 LVW 130
>gi|224133566|ref|XP_002321606.1| predicted protein [Populus trichocarpa]
gi|222868602|gb|EEF05733.1| predicted protein [Populus trichocarpa]
Length = 91
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-----EHTLSSLRC 62
RPLSPHL IY SIV+RI+G+ YL V+ F C+ G +
Sbjct: 4 RPLSPHLPIYSPQVHSTFSIVNRISGA--YLSALVLFFCLICLKAGSICFTHYNFYQFLF 61
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLI 92
Y + V A+ +H+ G+R+L+
Sbjct: 62 YSSKLILPVVDVTAALALTYHLFYGVRHLL 91
>gi|114560909|ref|XP_001173993.1| PREDICTED: succinate dehydrogenase complex, subunit C isoform 2
[Pan troglodytes]
Length = 175
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLG 39
+I +NRPLSPH+ IY M +SI HR TG + G
Sbjct: 45 NIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAG 81
>gi|327351834|gb|EGE80691.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
dermatitidis ATCC 18188]
Length = 293
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIAN---GEHTLSSLRCY 63
NRP+SP+L IYR T +SI+HR TG +V G +F+ +A+ G H S+
Sbjct: 124 NRPISPNLTIYRPQITSVLSILHRNTGLLVSGG--FYLFFAVYLASPWLGWHIDSASMAA 181
Query: 64 MDGSVFEVCLFLYTWAV----IHHMLGGIRYLIWDVSLCLDK 101
G++ L V H G+R+LIW LD
Sbjct: 182 SFGALPVAAKVLLRTTVALPFTFHSFNGVRHLIWVAMNNLDS 223
>gi|325266125|ref|ZP_08132809.1| succinate dehydrogenase cytochrome b558 subunit [Kingella
denitrificans ATCC 33394]
gi|324982355|gb|EGC17983.1| succinate dehydrogenase cytochrome b558 subunit [Kingella
denitrificans ATCC 33394]
Length = 127
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%)
Query: 25 VSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHM 84
VSI+HR +G +++L PV++ + + + + D ++ L W IHH+
Sbjct: 25 VSILHRASGVMLFLLLPVLLSLLAGSLSSGQAFAEYKAWADNWFMKLILIGVLWLFIHHL 84
Query: 85 LGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
GIR+L+ D + ++ + A + AK + + T I+
Sbjct: 85 FAGIRFLLIDAHIGVELQPARKTAKWVLYGAPATAFIL 122
>gi|156849173|ref|XP_001647467.1| hypothetical protein Kpol_1018p147 [Vanderwaltozyma polyspora DSM
70294]
gi|156118153|gb|EDO19609.1| hypothetical protein Kpol_1018p147 [Vanderwaltozyma polyspora DSM
70294]
Length = 170
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRIT----GSVVYL 38
+++ + NRP+SPHL IY+ T ++S VHR++ G+ YL
Sbjct: 42 LTAQRGNRPISPHLTIYQPQLTWYLSSVHRVSCIALGACFYL 83
>gi|50286141|ref|XP_445499.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524804|emb|CAG58410.1| unnamed protein product [Candida glabrata]
Length = 181
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 15/105 (14%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRIT----GSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
RP+SPHL IY+ T ++S VHRI+ G Y+ T ++F +G +T S + Y
Sbjct: 59 RPISPHLTIYQPQLTWYMSSVHRISHLILGGTFYVLT--ILFGLGYFVSGINTESVSQWY 116
Query: 64 ------MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
M + + F +T+A H IR+ IWD + L K
Sbjct: 117 HKHVSPMTEQIVKAG-FAFTFAF--HYFSTIRHYIWDFAKELTLK 158
>gi|270268651|gb|ACZ65867.1| ENSANGP00000017418-like protein [Nasonia longicornis]
gi|270268653|gb|ACZ65868.1| ENSANGP00000017418-like protein [Nasonia longicornis]
gi|270268655|gb|ACZ65869.1| ENSANGP00000017418-like protein [Nasonia longicornis]
gi|270268657|gb|ACZ65870.1| ENSANGP00000017418-like protein [Nasonia longicornis]
gi|270268659|gb|ACZ65871.1| ENSANGP00000017418-like protein [Nasonia longicornis]
gi|270268661|gb|ACZ65872.1| ENSANGP00000017418-like protein [Nasonia longicornis]
gi|270268663|gb|ACZ65873.1| ENSANGP00000017418-like protein [Nasonia longicornis]
gi|270268665|gb|ACZ65874.1| ENSANGP00000017418-like protein [Nasonia giraulti]
gi|270268667|gb|ACZ65875.1| ENSANGP00000017418-like protein [Nasonia giraulti]
gi|270268669|gb|ACZ65876.1| ENSANGP00000017418-like protein [Nasonia giraulti]
gi|270268671|gb|ACZ65877.1| ENSANGP00000017418-like protein [Nasonia giraulti]
gi|270268673|gb|ACZ65878.1| ENSANGP00000017418-like protein [Nasonia giraulti]
gi|270268675|gb|ACZ65879.1| ENSANGP00000017418-like protein [Nasonia giraulti]
Length = 101
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV 36
+++ RPLSPHL IY+L T +S+ HR TG V+
Sbjct: 51 NMRLKRPLSPHLTIYQLQLTSMLSVTHRGTGIVL 84
>gi|146310880|ref|YP_001175954.1| succinate dehydrogenase subunit C [Enterobacter sp. 638]
gi|145317756|gb|ABP59903.1| succinate dehydrogenase subunit C [Enterobacter sp. 638]
Length = 157
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ L+ R T SI+HR +G + ++ +++ W +LSS
Sbjct: 32 NVKKQRPVNLDLKTIRFPVTAIASILHRASGVITFVAVGILL-WLLGT-----SLSSPEG 85
Query: 63 YMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDVSLCLD-----KKIATQMAKIN 111
++ S F+ W ++ H++ G+R+++ D + K+ A I
Sbjct: 86 FLQASAIMSSFFVKFIMWGILTALAFHVVVGVRHMLMDFGYLEETFEAGKRSAYISFAIT 145
Query: 112 IIASILTVLIVW 123
++ SIL ++VW
Sbjct: 146 VVFSILAGVLVW 157
>gi|74317200|ref|YP_314940.1| succinate dehydrogenase subunit C [Thiobacillus denitrificans ATCC
25259]
gi|74056695|gb|AAZ97135.1| succinate dehydrogenase cytochrome b-556 subunit [Thiobacillus
denitrificans ATCC 25259]
Length = 126
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%)
Query: 24 FVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHH 83
+VSI+HR++G++++L P V+ + E + + + WA HH
Sbjct: 22 WVSILHRVSGALLFLALPTGVWLLSVSLSDEAGYRYVSEVFAHPLARTATLVLVWAASHH 81
Query: 84 MLGGIRYLIWDVSLCLDKKIATQ 106
G+R+L DV D A +
Sbjct: 82 FFAGLRHLALDVHWGEDLASARR 104
>gi|54308237|ref|YP_129257.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Photobacterium profundum SS9]
gi|46912665|emb|CAG19455.1| putative succinate dehydrogenase; fumaratereductase, cytochrome b
subunit [Photobacterium profundum SS9]
Length = 126
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+K RP++ LQ R SI+HR++G + ++ ++++ + +S
Sbjct: 2 KVKKPRPVNLDLQTIRFPLPAIASILHRVSGVITFVSVAILLWLLSISLSSPEGFASAAS 61
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN-IIASILTVL- 120
D + L+ A+ +H++ G+R+L+ D+ + + K++ +I ++L+V
Sbjct: 62 IADSFFVKFILWGVLTALFYHIVVGVRHLLMDMGYFEEMETGIASTKVSFVIVAVLSVFA 121
Query: 121 --IVW 123
+VW
Sbjct: 122 GGLVW 126
>gi|88608119|ref|YP_505948.1| succinate dehydrogenase, cytochrome b556 subunit [Neorickettsia
sennetsu str. Miyayama]
gi|88600288|gb|ABD45756.1| succinate dehydrogenase, cytochrome b556 subunit [Neorickettsia
sennetsu str. Miyayama]
Length = 140
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFW----FFCIANGEHTLSSLRC 62
PLSP L YR +SI HR++G+ ++ T ++ F+ ++ HT+ L
Sbjct: 17 RSPLSPSLFAYRFPLAAILSISHRLSGAFLFFYTGFFSWYVFACFYMPSSFLHTV--LSP 74
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ G + L + + +H+ G+R+L WD L +
Sbjct: 75 FFSGYLAGFLLCFFLFFFCYHLCSGVRHLFWDFCTGLSQA 114
>gi|212543951|ref|XP_002152130.1| succinate dehydrogenase, putative [Penicillium marneffei ATCC
18224]
gi|210067037|gb|EEA21130.1| succinate dehydrogenase, putative [Penicillium marneffei ATCC
18224]
Length = 200
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFCIANGEHT 56
RP+SPH+ IY+ SI+ R +G ++ YL P + + + E
Sbjct: 72 RRPVSPHITIYKWQYQSLTSILQRFSGMFLAGGIYVFAIGYLVAPTISPGLEQVFDLETI 131
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+S+ R + G F +H G+++L+WD + L K
Sbjct: 132 VSAAR-EVPGWAKSGGKFALALPFTYHFFNGVKHLMWDSGIGLAHK 176
>gi|212543953|ref|XP_002152131.1| succinate dehydrogenase, putative [Penicillium marneffei ATCC
18224]
gi|210067038|gb|EEA21131.1| succinate dehydrogenase, putative [Penicillium marneffei ATCC
18224]
Length = 199
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFCIANGEHT 56
RP+SPH+ IY+ SI+ R +G ++ YL P + + + E
Sbjct: 71 RRPVSPHITIYKWQYQSLTSILQRFSGMFLAGGIYVFAIGYLVAPTISPGLEQVFDLETI 130
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+S+ R + G F +H G+++L+WD + L K
Sbjct: 131 VSAAR-EVPGWAKSGGKFALALPFTYHFFNGVKHLMWDSGIGLAHK 175
>gi|270268641|gb|ACZ65862.1| ENSANGP00000017418-like protein [Nasonia vitripennis]
gi|270268643|gb|ACZ65863.1| ENSANGP00000017418-like protein [Nasonia vitripennis]
gi|270268645|gb|ACZ65864.1| ENSANGP00000017418-like protein [Nasonia vitripennis]
gi|270268647|gb|ACZ65865.1| ENSANGP00000017418-like protein [Nasonia vitripennis]
gi|270268649|gb|ACZ65866.1| ENSANGP00000017418-like protein [Nasonia vitripennis]
Length = 101
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV 36
+++ RPLSPHL IY+L T +S+ HR TG V+
Sbjct: 51 NMRLKRPLSPHLTIYQLQLTSMLSVTHRGTGIVL 84
>gi|157146672|ref|YP_001453991.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Citrobacter koseri ATCC BAA-895]
gi|157083877|gb|ABV13555.1| hypothetical protein CKO_02438 [Citrobacter koseri ATCC BAA-895]
Length = 134
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ L R T SI+HR++G + ++ +++ W +LSS
Sbjct: 9 NVKKQRPVNLDLTTIRFPITAIASILHRVSGVITFVAVGILL-WLLGT-----SLSSPEG 62
Query: 63 YMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDVSLCLDK-KIATQMAKIN---- 111
+ S F+ W ++ +H++ GIR+++ D + + + AKI+
Sbjct: 63 FQQASAIMGSFFIKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVIT 122
Query: 112 IIASILTVLIVW 123
++ S+L ++VW
Sbjct: 123 VVLSLLAGVLVW 134
>gi|169615981|ref|XP_001801406.1| hypothetical protein SNOG_11157 [Phaeosphaeria nodorum SN15]
gi|111060536|gb|EAT81656.1| hypothetical protein SNOG_11157 [Phaeosphaeria nodorum SN15]
Length = 174
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 25/110 (22%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD- 65
NRP+SPHL IYR T + S ++R+T ++ T W F +T L
Sbjct: 50 NRPVSPHLSIYRPQITWYSSGLYRLTAVII---TGSFYLWGFAYLAAPYTGWHLETQSMV 106
Query: 66 --------------GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK 101
S F + F H GIR+L+WD + +
Sbjct: 107 AAVAAWPAAVKIGVKSFFALPFFF-------HAYQGIRHLVWDFGIGMKN 149
>gi|254796445|ref|YP_003081281.1| succinate dehydrogenase, cytochrome b556 subunit [Neorickettsia
risticii str. Illinois]
gi|254589682|gb|ACT69044.1| succinate dehydrogenase, cytochrome b556 subunit [Neorickettsia
risticii str. Illinois]
Length = 156
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFW----FFCIANGEHTLSSLRCYM 64
PLSP L YR +SI HR++G+ ++ T ++ F+ ++ HT+ L +
Sbjct: 35 PLSPSLFAYRFPLAAILSISHRLSGAFLFFYTGFFSWYVFACFYMPSSFLHTV--LSPFF 92
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
G + L + + +H+ G+R+L WD L +
Sbjct: 93 SGYLAGFLLCFFLFFFCYHLCSGVRHLFWDFCTGLSQA 130
>gi|257453555|ref|ZP_05618845.1| succinate dehydrogenase, cytochrome b556 subunit [Enhydrobacter
aerosaccus SK60]
gi|257449013|gb|EEV23966.1| succinate dehydrogenase, cytochrome b556 subunit [Enhydrobacter
aerosaccus SK60]
Length = 126
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 4 IKNNRP----LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
+K+NRP LS + + P SI HR++G V++L PV++ W F + +L+S
Sbjct: 1 MKSNRPIDLPLSQVINVNSKNPIALASITHRVSGVVLFLLIPVML-WIF-----QTSLAS 54
Query: 60 LRCYMD---GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL 97
+ D + + +++ A+ +H + G ++L D+ +
Sbjct: 55 AEGFADIFTNPLVKFLAWIFVAALGYHFVMGFKHLFADMGM 95
>gi|224456308|ref|ZP_03664781.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. tularensis MA00-2987]
Length = 134
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%)
Query: 14 LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCL 73
++ Y T SI+HRI+G V+ + P+ V G + S F V
Sbjct: 12 IKSYNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQTVTVLTKSWFSVFF 71
Query: 74 FLYTWAVIHHMLGGIRYLIWDVSLCLDKKIA 104
+L+ ++ +H+ GIR++I D+ K+A
Sbjct: 72 WLFLSSITYHVYAGIRHMIMDMGFGESMKVA 102
>gi|254874087|ref|ZP_05246797.1| sdhC, succinate dehydrogenase, cytochrome b556 [Francisella
tularensis subsp. tularensis MA00-2987]
gi|254840086|gb|EET18522.1| sdhC, succinate dehydrogenase, cytochrome b556 [Francisella
tularensis subsp. tularensis MA00-2987]
Length = 165
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%)
Query: 14 LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCL 73
++ Y T SI+HRI+G V+ + P+ V G + S F V
Sbjct: 43 IKSYNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQTVTVLTKSWFSVFF 102
Query: 74 FLYTWAVIHHMLGGIRYLIWDVSLCLDKKIA 104
+L+ ++ +H+ GIR++I D+ K+A
Sbjct: 103 WLFLSSITYHVYAGIRHMIMDMGFGESMKVA 133
>gi|156973648|ref|YP_001444555.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio harveyi ATCC BAA-1116]
gi|156525242|gb|ABU70328.1| hypothetical protein VIBHAR_01351 [Vibrio harveyi ATCC BAA-1116]
Length = 130
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 57/121 (47%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 8 RKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSISLSSPMGFMEAADIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
D + L+ A+ +H+ GG+R+L+ D+ + + AK+ A+ + L+ I
Sbjct: 68 DSFFVKFILWGILTALAYHIAGGVRHLLMDLGHFEELESGAMSAKVAFGATAVLSLLAGI 127
Query: 125 I 125
+
Sbjct: 128 L 128
>gi|91228424|ref|ZP_01262349.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio alginolyticus 12G01]
gi|91188008|gb|EAS74315.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio alginolyticus 12G01]
Length = 126
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ T SI+HR++G + ++ ++++ + +
Sbjct: 4 RKSRPVNLDLQTIHFPITAIASILHRVSGVITFVAVGILLWLLSISLSSPMGFMEAADIV 63
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA----SILTVL 120
D + L+ A+ +H+ GGIR+L+ D+ + T AK+ A S+L +
Sbjct: 64 DSFFVKFILWGILTALAYHIAGGIRHLLMDLGHFEELDSGTMSAKVAFGATAVLSLLAGI 123
Query: 121 IVW 123
+VW
Sbjct: 124 LVW 126
>gi|324520630|gb|ADY47681.1| Succinate dehydrogenase cytochrome b560 subunit [Ascaris suum]
Length = 192
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RP++PHL IY+ T VS +HR+TG + GT ++ F + + T + ++ G
Sbjct: 57 KRPIAPHLTIYKPQMTWMVSGLHRVTGCAM-AGTLLIGGVGFSVLPLDFT--TFVEFIRG 113
Query: 67 -----SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
+ + F+ + + H L GIR++ +D++ D
Sbjct: 114 LGIPWVILDTFKFIIAFPIAFHTLNGIRFIGFDMAKGTD 152
>gi|324520449|gb|ADY47640.1| Succinate dehydrogenase cytochrome b560 subunit [Ascaris suum]
Length = 142
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RP++PHL IY+ T VS +HR+TG + GT ++ F + + T + ++ G
Sbjct: 7 KRPIAPHLTIYKPQMTWMVSGLHRVTGCAM-AGTLLIGGVGFSVLPLDFT--TFVEFIRG 63
Query: 67 -----SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
+ + F+ + + H L GIR++ +D++ D
Sbjct: 64 LGIPWVILDTFKFIIAFPIAFHTLNGIRFIGFDMAKGTD 102
>gi|56756809|gb|AAW26576.1| SJCHGC03139 protein [Schistosoma japonicum]
Length = 132
Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLG 39
+I RP SPHLQIY M S +HR TG + +G
Sbjct: 66 NITGGRPWSPHLQIYSAPLVMRFSFLHRATGIAMAIG 102
>gi|299768983|ref|YP_003731009.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter sp.
DR1]
gi|298699071|gb|ADI89636.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter sp.
DR1]
Length = 120
Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 57/111 (51%), Gaps = 13/111 (11%)
Query: 21 PTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC--YMDGSVF-----EVCL 73
P SI+HR++G +V+L PV++ W + +LSS Y+ VF +
Sbjct: 12 PVAIASILHRLSGVIVFLLVPVLL-WIL-----DKSLSSPEGFDYVKNVVFGNILVRFIV 65
Query: 74 FLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+++ ++ H + G+++L+ D+ + + A I++I S++ ++ +I
Sbjct: 66 WVFVAGLLFHFIAGVKHLLADLGFAEELQSGRIAATISLILSVVAIIAAFI 116
>gi|170094680|ref|XP_001878561.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647015|gb|EDR11260.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 181
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWF---FCIANGEHTLSSLRCYM 64
RP SPH IY+ T SI +R+TGS G V+++ F + +A G + + ++
Sbjct: 61 RPSSPHFTIYQPQLTWLGSIANRVTGS----GLSVLLYGFSIAYLVAPGTFDSAHVVEFV 116
Query: 65 DGSVFEVCLF----LYTWAVIHHMLGGIRYLIWDVS 96
G + EV + + H L G+R+L WD+
Sbjct: 117 AG-LPEVVKYAGKAILAAPFAFHSLNGLRHLGWDMG 151
>gi|63253076|dbj|BAA11232.2| cytochrome b-large subunit [Ascaris suum]
Length = 188
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RP++PHL IY+ T VS +HR+TG + GT ++ F + + T + ++ G
Sbjct: 53 KRPIAPHLTIYKPQMTWMVSGLHRVTGCAM-AGTLLIGGVGFSVLPLDFT--TFVEFIRG 109
Query: 67 -----SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
+ + F+ + + H L GIR++ +D++ D
Sbjct: 110 LGIPWVILDTFKFIIAFPIAFHTLNGIRFIGFDMAKGTD 148
>gi|258626217|ref|ZP_05721065.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio mimicus
VM603]
gi|258581572|gb|EEW06473.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio mimicus
VM603]
Length = 130
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ + SI+HR++G + ++ ++++ + +
Sbjct: 8 RKSRPVNLDLQTIHFPISAIASILHRVSGVITFVAVGILLWLLSLSLSSPVGFMEASNIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA----SILTVL 120
D + + L+ A+ +H+ GGIR+L+ D+ + + AK+ A S+L +
Sbjct: 68 DSFLVKFVLWGILTALAYHIAGGIRHLLMDLGHFEELESGATSAKVAFAATAVLSLLAGV 127
Query: 121 IVW 123
+VW
Sbjct: 128 LVW 130
>gi|91777242|ref|YP_552450.1| succinate dehydrogenase subunit C [Burkholderia xenovorans LB400]
gi|91689902|gb|ABE33100.1| succinate dehydrogenase subunit C [Burkholderia xenovorans LB400]
Length = 137
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 2 SSIKNNRP------LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
++K RP + L YRL VSI+HR++G ++++ P +++ F E
Sbjct: 3 EAVKKPRPEFRNIGIGQILTAYRLPLAGRVSILHRLSGGLLFVFLPFLLYLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQ 106
+ + ++ + ++ + WA + H GIR+L+ D + K+ Q
Sbjct: 63 SFEVFKGFLSNIIVKLITLVLAWAFLFHFCAGIRHLVMDTHRAVTKEGGKQ 113
>gi|2864622|emb|CAA16969.1| putative protein [Arabidopsis thaliana]
gi|7270125|emb|CAB79939.1| putative protein [Arabidopsis thaliana]
Length = 1086
Score = 35.0 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYL 38
IK+ RPLSPHL +Y+ +SI +RI+G VYL
Sbjct: 994 IKSFRPLSPHLSVYQPQMNSMLSIFNRISG--VYL 1026
>gi|324518019|gb|ADY46982.1| Succinate dehydrogenase cytochrome b560 subunit [Ascaris suum]
Length = 150
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RP++PHL IY+ T VS +HR+TG + GT ++ F + + T + ++ G
Sbjct: 15 KRPIAPHLTIYKPQMTWMVSGLHRVTGCAM-AGTLLIGGVGFSVLPLDFT--TFVEFIRG 71
Query: 67 -----SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD 100
+ + F+ + + H L GIR++ +D++ D
Sbjct: 72 LGIPWVILDTFKFIIAFPIAFHTLNGIRFIGFDMAKGTD 110
>gi|330804877|ref|XP_003290416.1| hypothetical protein DICPUDRAFT_92482 [Dictyostelium purpureum]
gi|325079467|gb|EGC33066.1| hypothetical protein DICPUDRAFT_92482 [Dictyostelium purpureum]
Length = 116
Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLG 39
+P SPHL IYRL +SI+HR TG + LG
Sbjct: 66 KPTSPHLTIYRLPLPANISIMHRATGVSLGLG 97
>gi|254567019|ref|XP_002490620.1| Putative protein of unknown function [Pichia pastoris GS115]
gi|238030416|emb|CAY68340.1| Putative protein of unknown function [Pichia pastoris GS115]
Length = 177
Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLG---------TPVVVFWFFCIANGEHTLS 58
RP SPHL IY T +S HRITG + G ++ + F A+ S
Sbjct: 55 RPSSPHLTIYAPQLTWILSSFHRITGVGLAGGFYALTCGYAAANLLGYDFTSADIVGLYS 114
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWD 94
L Y+ SV + + + + H+ G+R+L+WD
Sbjct: 115 QLPEYIKYSVKAIAAYPF----VFHISNGLRHLVWD 146
>gi|195329969|ref|XP_002031681.1| GM26134 [Drosophila sechellia]
gi|194120624|gb|EDW42667.1| GM26134 [Drosophila sechellia]
Length = 264
Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA------NGEHTLSSL 60
R LSPHL IY++ T +S RI+G V+ V WF I+ + E + L
Sbjct: 83 GRQLSPHLSIYKIQLTSTLSAFLRISGFVL-----AVFVWFVGISGLCLQGDMEGYIKKL 137
Query: 61 -RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIW 93
+C G V + + T +H + G R+LIW
Sbjct: 138 EKCDCQGMV-TMAKVMVTIPFAYHTVAGTRHLIW 170
>gi|215919176|ref|NP_820388.2| succinate dehydrogenase cytochrome b556 subunit [Coxiella burnetii
RSA 493]
gi|206584060|gb|AAO90902.2| succinate dehydrogenase cytochrome b556 subunit [Coxiella burnetii
RSA 493]
Length = 165
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFF-CIANGEHTLSSL 60
+ RP++ L + P +SI HRI+G V++L P++ + A+ E
Sbjct: 39 KGMNAKRPVNLDLTKFHFPPMAILSIGHRISGFVLFLCMPLMFYLLHRATASAESFYHLH 98
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL 97
+ + ++ +++ A + H+ GIR+L D+
Sbjct: 99 QLLLHNGWIKLAVWIMLSATLFHLFAGIRHLAMDLGF 135
>gi|304445630|pdb|2WU2|C Chain C, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
gi|304445634|pdb|2WU2|G Chain G, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
gi|304445638|pdb|2WU2|K Chain K, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
Length = 129
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ +++ W +LSS
Sbjct: 4 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILL-WLLG-----TSLSSPEG 57
Query: 63 YMDGSVFEVCLFLY--TWAVI----HHMLGGIRYLIWDVSLCLDK-KIATQMAKIN---- 111
+ S F+ W ++ + ++ GIR+++ D + + + AKI+
Sbjct: 58 FEQASAIMGSFFVKFIMWGILTALAYMVVVGIRHMMMDFGYLEETFEAGKRSAKISFVIT 117
Query: 112 IIASILTVLIVW 123
++ S+L ++VW
Sbjct: 118 VVLSLLAGVLVW 129
>gi|78711820|ref|NP_001030588.1| succinate dehydrogenase cytochrome b560 subunit, mitochondrial
isoform 2 precursor [Homo sapiens]
gi|114560907|ref|XP_001174000.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial isoform 3 [Pan troglodytes]
gi|78096641|dbj|BAE46979.1| succinate dehydrogenase complex, subunit C delta5 alternative
splicing variant [Homo sapiens]
gi|194376880|dbj|BAG57586.1| unnamed protein product [Homo sapiens]
Length = 150
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITG 33
+I +NRPLSPH+ IY M +SI HR TG
Sbjct: 45 NIGSNRPLSPHITIYSWSLPMAMSICHRGTG 75
>gi|328351008|emb|CCA37408.1| hypothetical protein PP7435_Chr1-1289 [Pichia pastoris CBS 7435]
Length = 175
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLG---------TPVVVFWFFCIANGEHTLS 58
RP SPHL IY T +S HRITG + G ++ + F A+ S
Sbjct: 53 RPSSPHLTIYAPQLTWILSSFHRITGVGLAGGFYALTCGYAAANLLGYDFTSADIVGLYS 112
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWD 94
L Y+ SV + + + + H+ G+R+L+WD
Sbjct: 113 QLPEYIKYSVKAIAAYPF----VFHISNGLRHLVWD 144
>gi|21356401|ref|NP_650041.1| CG6629 [Drosophila melanogaster]
gi|7299395|gb|AAF54585.1| CG6629 [Drosophila melanogaster]
gi|19527967|gb|AAL90098.1| AT18465p [Drosophila melanogaster]
gi|220949652|gb|ACL87369.1| CG6629-PA [synthetic construct]
gi|220958876|gb|ACL91981.1| CG6629-PA [synthetic construct]
Length = 261
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 21/98 (21%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
R LSPHL IY++ T +S RI+G V+ V WF I+ L+ M+G
Sbjct: 83 GRQLSPHLSIYKIQLTSTLSAFLRISGFVL-----AVFVWFVGISG-----LCLQGDMEG 132
Query: 67 SVFEV----CLFLYTWAVI-------HHMLGGIRYLIW 93
+ +V C + T A + +H + G R+LIW
Sbjct: 133 FIKKVEKCDCHGMVTMAKVMVTMPFAYHTVAGTRHLIW 170
>gi|212212228|ref|YP_002303164.1| succinate dehydrogenase cytochrome b556 subunit [Coxiella burnetii
CbuG_Q212]
gi|212010638|gb|ACJ18019.1| succinate dehydrogenase cytochrome b556 subunit [Coxiella burnetii
CbuG_Q212]
Length = 165
Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFF-CIANGEHTLSSL 60
+ RP++ L + P +SI HRI+G V++L P++ + A+ E
Sbjct: 39 KGMNATRPVNLDLTKFHFPPMAILSIGHRISGFVLFLCMPLMFYLLHRATASAESFYHLH 98
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL 97
+ + ++ +++ A + H+ GIR+L D+
Sbjct: 99 QLLLHNGWIKLAVWIMLSATLFHLFAGIRHLAMDLGF 135
>gi|209363838|ref|YP_001423999.2| succinate dehydrogenase cytochrome b556 subunit [Coxiella burnetii
Dugway 5J108-111]
gi|207081771|gb|ABS76846.2| succinate dehydrogenase cytochrome b556 subunit [Coxiella burnetii
Dugway 5J108-111]
Length = 165
Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFF-CIANGEHTLSSL 60
+ RP++ L + P +SI HRI+G V++L P++ + A+ E
Sbjct: 39 KGMNATRPVNLDLTKFHFPPMAILSIGHRISGFVLFLCMPLMFYLLHQATASAESFYHLH 98
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL 97
+ + ++ +++ A + H+ GIR+L D+
Sbjct: 99 QLLLHNGWIKLAVWIMLSATLFHLFAGIRHLAMDLGF 135
>gi|85711267|ref|ZP_01042326.1| Succinate dehydrogenase/fumarate reductase cytochrome b subunit
[Idiomarina baltica OS145]
gi|85694768|gb|EAQ32707.1| Succinate dehydrogenase/fumarate reductase cytochrome b subunit
[Idiomarina baltica OS145]
Length = 156
Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
S +K RP++ L + SI+HR++G ++ + +++ F +G + +
Sbjct: 31 SIVKKERPVNLDLSTIQFPAAAKASILHRVSGVIMLVSLAFLIWAFATSLSGPEGFAQVE 90
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLC--LDKKIATQMAKINIIASILTV 119
M + + + A+ H++ GIR+LI D+ LD A+ A I I + +
Sbjct: 91 SIMTSFIAKFIGWGILTALGFHLIIGIRHLIMDMGFWEELDSGRASATASIVISIIVSVL 150
Query: 120 LIVWI 124
+ VW+
Sbjct: 151 VGVWL 155
>gi|89900590|ref|YP_523061.1| succinate dehydrogenase, cytochrome b subunit [Rhodoferax
ferrireducens T118]
gi|89345327|gb|ABD69530.1| succinate dehydrogenase subunit C [Rhodoferax ferrireducens T118]
Length = 147
Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD-------GSVF 69
YR VS +HR++G++++ P V++ F + E + + G ++
Sbjct: 26 YRWPLASIVSGMHRVSGAIMFFLMPFVIWMFDNSISSEISFDKFTSAFNVGMLGLPGFIW 85
Query: 70 EVCLFLYTWAVIHHMLGGIRYLIWDV 95
++ WA +HH L GIR+L D
Sbjct: 86 KLVALGLIWAYLHHFLAGIRHLWMDT 111
>gi|295700755|ref|YP_003608648.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
CCGE1002]
gi|295439968|gb|ADG19137.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
CCGE1002]
Length = 138
Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 65/127 (51%), Gaps = 10/127 (7%)
Query: 2 SSIKNNRP------LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
++K RP + L YRL VSI+HR++G++++L P ++F F E
Sbjct: 3 EAVKKPRPEFRNIGIGQILTAYRLPLAGRVSILHRVSGALLFLFLPFLLFLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV---SLCLDKKIATQMAKINI 112
+ + ++ + ++ + WA + H GIR+L+ D ++ +K +T + + +
Sbjct: 63 SFEVFKGFLSNIIVKLITLVLAWAFLFHFCAGIRHLLMDTNHDAVSKEKGKSTSIV-VFV 121
Query: 113 IASILTV 119
++S+LT+
Sbjct: 122 VSSLLTI 128
>gi|330445465|ref|ZP_08309117.1| succinate dehydrogenase, cytochrome b556 subunit [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328489656|dbj|GAA03614.1| succinate dehydrogenase, cytochrome b556 subunit [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 133
Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ RP++ LQ R T SI+HR++G + ++ ++++ + ++
Sbjct: 9 KVNKPRPVNLDLQTIRFPLTAIASILHRVSGVITFVSLAILLWLLNLSLSSPDGFAAATS 68
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
D + L+ A+ +H++ G+R+L+ D L +++ T +A + +I+ VL V
Sbjct: 69 ITDSFFVKFVLWGVLIALFYHIVLGVRHLLMD--LGYFEEMDTGIASTKVSFAIVAVLAV 126
Query: 123 W 123
+
Sbjct: 127 F 127
>gi|115399864|ref|XP_001215521.1| predicted protein [Aspergillus terreus NIH2624]
gi|114191187|gb|EAU32887.1| predicted protein [Aspergillus terreus NIH2624]
Length = 198
Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 17/114 (14%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFCIANGEHT 56
RP+SPHL IYR M S + R TG + YL +P++ W A +
Sbjct: 73 RRPVSPHLAIYRWEMNMISSAMERNTGIMLSGALYLFATAYLVSPMMG-WDLSSA----S 127
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKI 110
L + + +V F W H G+R+ + + L+ + QMAKI
Sbjct: 128 LVTAFGALPWAVKAAVKFAAAWPFTFHFFNGVRFTVAATARTLNNR--EQMAKI 179
>gi|167583942|ref|ZP_02376330.1| Succinate dehydrogenase, cytochrome b subunit [Burkholderia
ubonensis Bu]
Length = 138
Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YRL VSI+HR++G++++L P ++F F E + + ++ + ++ +
Sbjct: 24 YRLPLAAKVSILHRVSGALLFLFLPFLLFLFDQSLTSELSFEGFKFFLSNVIVKLIVLAL 83
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA--SILTV 119
+WA H GIR+L+ D++ K + + +IA S+LTV
Sbjct: 84 SWAFFLHFCAGIRHLLMDINHDAVTKERGKSTSVVVIAVSSLLTV 128
>gi|212219000|ref|YP_002305787.1| succinate dehydrogenase cytochrome b556 subunit [Coxiella burnetii
CbuK_Q154]
gi|212013262|gb|ACJ20642.1| succinate dehydrogenase cytochrome b556 subunit [Coxiella burnetii
CbuK_Q154]
Length = 165
Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL- 60
+ RP++ L + P +SI HRI+G V++L P++ F+ + ++ S
Sbjct: 39 KGMNATRPVNLDLTKFHFPPMAILSIGHRISGFVLFLCMPLM---FYLLHRATASVESFY 95
Query: 61 ---RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL 97
+ + ++ +++ A + H+ GIR+L D+
Sbjct: 96 HLHQLLLHNGWIKLAVWIMLSATLFHLFAGIRHLAMDLGF 135
>gi|161831114|ref|YP_001597244.1| succinate dehydrogenase, cytochrome b556 subunit [Coxiella
burnetii RSA 331]
gi|1706427|sp|P51055|DHSC_COXBU RecName: Full=Succinate dehydrogenase cytochrome b556 subunit;
Short=Cytochrome b-556
gi|495753|gb|AAA74131.1| succinate dehydrogenase [Coxiella burnetii]
gi|161762981|gb|ABX78623.1| succinate dehydrogenase, cytochrome b556 subunit [Coxiella
burnetii RSA 331]
Length = 125
Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFF-CIANGEHTLSSLRC 62
+ RP++ L + P +SI HRI+G V++L P++ + A+ E +
Sbjct: 1 MNAKRPVNLDLTKFHFPPMAILSIGHRISGFVLFLCMPLMFYLLHRATASAESFYHLHQL 60
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL 97
+ ++ +++ A + H+ GIR+L D+
Sbjct: 61 LLHNGWIKLAVWIMLSATLFHLFAGIRHLAMDLGF 95
>gi|195571855|ref|XP_002103916.1| GD20687 [Drosophila simulans]
gi|194199843|gb|EDX13419.1| GD20687 [Drosophila simulans]
Length = 262
Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWF-----FCI-ANGEHTLSSL 60
R LSPHL IY++ T +S RI+G V+ V WF C+ + E + L
Sbjct: 80 GRQLSPHLSIYKIQLTSTLSAFLRISGFVL-----AVFVWFVGVSGLCLQGDMEGFIKKL 134
Query: 61 -RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIW 93
+C G V + + T +H + G R+LIW
Sbjct: 135 EKCDCHGMV-TMAKVMVTMPFAYHTVAGTRHLIW 167
>gi|302675006|ref|XP_003027187.1| hypothetical protein SCHCODRAFT_86145 [Schizophyllum commune H4-8]
gi|300100873|gb|EFI92284.1| hypothetical protein SCHCODRAFT_86145 [Schizophyllum commune H4-8]
Length = 175
Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITG---SVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
RP SPH+ IY+ T + SI +RITG SV+ G + + + H + +
Sbjct: 55 RRPNSPHMTIYQPQLTWYSSIANRITGVGLSVLLYGFSLGYLFLPGTFDSAHVVDFVAGL 114
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
D + L +H G+R+L WD+ L K
Sbjct: 115 PDAVKYAGKTIL-ALPFAYHGWNGVRHLGWDMGKFLTLK 152
>gi|94499006|ref|ZP_01305544.1| succinate dehydrogenase, cytochrome b556 subunit [Oceanobacter sp.
RED65]
gi|94428638|gb|EAT13610.1| succinate dehydrogenase, cytochrome b556 subunit [Oceanobacter sp.
RED65]
Length = 125
Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 14/129 (10%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RP + L SI HRI G ++++G V + C+ + +L S + +
Sbjct: 1 MNQQRPKNLDLSTISFPLPALTSITHRIAGVILFVG----VIFLLCVLS--DSLQSAQGF 54
Query: 64 MDGSVFEVCLF--LYTW----AVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINII-ASI 116
F TW A+ +H + GI++L+ D + K+ A I I+ A++
Sbjct: 55 AQAKQSMTTGFGSFITWGLLSALAYHFVAGIKHLVMDFGIGETKEGGKLGAIITIVLAAL 114
Query: 117 LTVLI-VWI 124
L VL VW+
Sbjct: 115 LIVLAGVWV 123
>gi|254283025|ref|ZP_04957993.1| succinate dehydrogenase, cytochrome b556 subunit [gamma
proteobacterium NOR51-B]
gi|219679228|gb|EED35577.1| succinate dehydrogenase, cytochrome b556 subunit [gamma
proteobacterium NOR51-B]
Length = 111
Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 18 RLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA-NGEHTLSSLRCYMDGSVFEVCLFLY 76
+L T + SI HR++G V G +++ W + E + + L + V + L+L
Sbjct: 2 KLPVTAWASIAHRVSG-VALFGMSILMVWALDASLASEQSFNELAAVLSSPVAKAILWLV 60
Query: 77 TWAVIHHMLGGIRYLIWD 94
A+ +H L G+++++ D
Sbjct: 61 AVALTYHSLAGVKHIVMD 78
>gi|15242460|ref|NP_196522.1| SDH3-1; succinate dehydrogenase [Arabidopsis thaliana]
gi|186515438|ref|NP_194948.2| SDH3-2; succinate dehydrogenase [Arabidopsis thaliana]
gi|7671429|emb|CAB89370.1| putative protein [Arabidopsis thaliana]
gi|17979473|gb|AAL50073.1| AT5g09600/F17I14_210 [Arabidopsis thaliana]
gi|18650626|gb|AAL75912.1| AT5g09600/F17I14_210 [Arabidopsis thaliana]
gi|20142337|tpg|DAA00014.1| TPA_exp: succinate dehydrogenase subunit 3 [Arabidopsis thaliana]
gi|20142339|tpg|DAA00015.1| TPA_exp: succinate dehydrogenase subunit 3 [Arabidopsis thaliana]
gi|33589714|gb|AAQ22623.1| At5g09600/F17I14_210 [Arabidopsis thaliana]
gi|332004031|gb|AED91414.1| succinate dehydrogenase 3-1 [Arabidopsis thaliana]
gi|332004033|gb|AED91416.1| succinate dehydrogenase 3-1 [Arabidopsis thaliana]
gi|332660620|gb|AEE86020.1| succinate dehydrogenase 3-2 [Arabidopsis thaliana]
Length = 213
Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYL 38
IK+ RPLSPHL +Y+ +SI +RI+G VYL
Sbjct: 121 IKSFRPLSPHLSVYQPQMNSMLSIFNRISG--VYL 153
>gi|321268751|gb|ADW79200.1| succinate dehydrogenase subunit 3 [Cyanophora paradoxa]
Length = 144
Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIAN--GEHTLSSLRCYMD 65
+ +SPHL IY L +SI++RI G ++ + +F+F + E + + Y+
Sbjct: 6 KIISPHLNIYNLELQSGLSILNRICGLIL----TLFIFYFIIMDTLLYETFIITHFSYIL 61
Query: 66 GSVFEVCLFLYTWAV--------IHHMLGGIRYLIWDVSLCLDKK 102
+F++ Y + + + H GIR++IWD+++ L KK
Sbjct: 62 YYLFDLIQEEYEFTIGVTMSLIILIHFFCGIRHIIWDLNIGLTKK 106
>gi|21593777|gb|AAM65744.1| unknown [Arabidopsis thaliana]
Length = 213
Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYL 38
IK+ RPLSPHL +Y+ +SI +RI+G VYL
Sbjct: 121 IKSFRPLSPHLSVYQPQMNSMLSIFNRISG--VYL 153
>gi|11022654|dbj|BAB17027.1| unnamed protein product [Arabidopsis thaliana]
Length = 240
Score = 33.9 bits (76), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYL 38
IK+ RPLSPHL +Y+ +SI +RI+G VYL
Sbjct: 148 IKSFRPLSPHLSVYQPQMNSMLSIFNRISG--VYL 180
>gi|296120489|ref|YP_003628267.1| hypothetical protein Plim_0216 [Planctomyces limnophilus DSM 3776]
gi|296012829|gb|ADG66068.1| protein of unknown function DUF420 [Planctomyces limnophilus DSM
3776]
Length = 444
Score = 33.5 bits (75), Expect = 8.7, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE---HTLSSLRC 62
N RP+ P + R + T+ I ++ L T +++ + CI G+ H L
Sbjct: 284 NVRPIPPEDLLPRWVKTL-----PAINAALNGLATLLLITGYICIRRGQREMHRQLMLST 338
Query: 63 YMDGSVFEVCLFLYTWAV 80
+M VF VC +Y WA+
Sbjct: 339 FMTSVVFLVCYLVYHWAL 356
>gi|312221584|emb|CBY01524.1| similar to succinate dehydrogenase cytochrome b560 subunit
[Leptosphaeria maculans]
Length = 174
Score = 33.5 bits (75), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 15/111 (13%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITG----------SVVYLGTPVVVFWFFCI 50
++ + RP+SPHL IY+ T + S ++R+T + YL P W
Sbjct: 44 LAKQRTRRPVSPHLSIYKPQITWYGSALNRVTAIALSGSLYLFGIAYLAAP-YTGWHLET 102
Query: 51 ANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK 101
A ++ + +V + + +H L G+R+L WD +
Sbjct: 103 A----SMVAAVAAWPAAVKVGAKAFFAFPFFYHSLNGVRHLFWDAGIGFKN 149
>gi|167615383|ref|ZP_02384018.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
thailandensis Bt4]
Length = 138
Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 45/80 (56%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YR+ VSI+HR++G++++L P +++ F E + + ++ + ++ +
Sbjct: 24 YRMPLAARVSILHRVSGALLFLFLPFLLYLFDQSLTSELSFEVFKAFLSNVIVKLIVLAL 83
Query: 77 TWAVIHHMLGGIRYLIWDVS 96
+WA + H GIR+L+ D++
Sbjct: 84 SWAFLFHFCAGIRHLMMDMN 103
>gi|164686052|ref|ZP_01946353.2| succinate dehydrogenase, cytochrome b556 subunit [Coxiella
burnetii 'MSU Goat Q177']
gi|165918979|ref|ZP_02219065.1| succinate dehydrogenase, cytochrome b556 subunit [Coxiella
burnetii RSA 334]
gi|164601608|gb|EAX33026.2| succinate dehydrogenase, cytochrome b556 subunit [Coxiella
burnetii 'MSU Goat Q177']
gi|165917304|gb|EDR35908.1| succinate dehydrogenase, cytochrome b556 subunit [Coxiella
burnetii RSA 334]
Length = 125
Score = 33.5 bits (75), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL--- 60
+ RP++ L + P +SI HRI+G V++L P++ F+ + ++ S
Sbjct: 1 MNATRPVNLDLTKFHFPPMAILSIGHRISGFVLFLCMPLM---FYLLHRATASVESFYHL 57
Query: 61 -RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL 97
+ + ++ +++ A + H+ GIR+L D+
Sbjct: 58 HQLLLHNGWIKLAVWIMLSATLFHLFAGIRHLAMDLGF 95
>gi|56460613|ref|YP_155894.1| succinate dehydrogenase/fumarate reductase cytochrome b subunit
[Idiomarina loihiensis L2TR]
gi|56179623|gb|AAV82345.1| Succinate dehydrogenase/fumarate reductase cytochrome b subunit
[Idiomarina loihiensis L2TR]
Length = 124
Score = 33.5 bits (75), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA-NGEHTLSSLRC 62
+K RP++ L +L SI+HRI+G V L + + W F ++ +G + +
Sbjct: 1 MKKERPVNLDLSTIKLPAAAKASILHRISG-VAMLFSLAFLIWAFAVSLSGPEGFAQIES 59
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
M + + + A+ H++ G+R+L+ D+
Sbjct: 60 IMTSFIAKFIGWGILTALGFHLIIGLRHLVMDMG 93
Searching..................................................done
Results from round 2
>gi|163761421|ref|ZP_02168495.1| putative succinate dehydrogenase cytochrome b556 subunit [Hoeflea
phototrophica DFL-43]
gi|162281416|gb|EDQ31713.1| putative succinate dehydrogenase cytochrome b556 subunit [Hoeflea
phototrophica DFL-43]
Length = 163
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 52/129 (40%), Positives = 78/129 (60%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ NRPLSPHL IY+ IPTM +SI+HR+TG +Y GT +V +W A+G +
Sbjct: 33 MTNVTQNRPLSPHLSIYKQIPTMVMSILHRLTGMALYAGTILVAWWLIAAASGPEYFDWV 92
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + LF YTWA++HH+LGGIR+ IWD D + +T+MA I S++ +
Sbjct: 93 NGIFGSLLGRLVLFGYTWALVHHLLGGIRHFIWDTGHGFDPQTSTKMAWATITGSVILTV 152
Query: 121 IVWIIKDIV 129
++WI
Sbjct: 153 LIWIAGYAT 161
>gi|148560663|ref|YP_001259728.1| succinate dehydrogenase, cytochrome subunit B [Brucella ovis ATCC
25840]
gi|189024973|ref|YP_001935741.1| Succinate dehydrogenase [Brucella abortus S19]
gi|225628104|ref|ZP_03786139.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella ceti
str. Cudo]
gi|237816266|ref|ZP_04595259.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella abortus
str. 2308 A]
gi|261323851|ref|ZP_05963048.1| succinate dehydrogenase cytochrome B subunit [Brucella neotomae
5K33]
gi|297247147|ref|ZP_06930865.1| succinate dehydrogenase cytochrome b-556 subunit [Brucella abortus
bv. 5 str. B3196]
gi|148371920|gb|ABQ61899.1| succinate dehydrogenase, cytochrome B subunit [Brucella ovis ATCC
25840]
gi|189020545|gb|ACD73267.1| Succinate dehydrogenase [Brucella abortus S19]
gi|225616929|gb|EEH13976.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella ceti
str. Cudo]
gi|237788333|gb|EEP62548.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella abortus
str. 2308 A]
gi|261299831|gb|EEY03328.1| succinate dehydrogenase cytochrome B subunit [Brucella neotomae
5K33]
gi|297174316|gb|EFH33663.1| succinate dehydrogenase cytochrome b-556 subunit [Brucella abortus
bv. 5 str. B3196]
Length = 187
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 78/129 (60%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
++ RPLSPHL IY+ + TM +SIVHRITG +Y GT ++ W A E +++
Sbjct: 58 QPTVTRQRPLSPHLSIYKPVITMTMSIVHRITGGALYFGTLLLAAWLISAATSEECFNTI 117
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + LF YTWA++HH+ GG+R+ IWD ++K A+++A +++ S++ +
Sbjct: 118 NALFSSWIGRLILFGYTWALLHHLAGGVRHFIWDTGAAMEKHTASKIAWASVVFSVVATI 177
Query: 121 IVWIIKDIV 129
+VW++ V
Sbjct: 178 LVWVVAYSV 186
>gi|254781041|ref|YP_003065454.1| succinate dehydrogenase protein, cytochrome b subunit [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040718|gb|ACT57514.1| succinate dehydrogenase protein, cytochrome b subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 129
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL
Sbjct: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL
Sbjct: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
Query: 121 IVWIIKDIV 129
IVWIIKDIV
Sbjct: 121 IVWIIKDIV 129
>gi|260464202|ref|ZP_05812395.1| succinate dehydrogenase, cytochrome b556 subunit [Mesorhizobium
opportunistum WSM2075]
gi|259030005|gb|EEW31288.1| succinate dehydrogenase, cytochrome b556 subunit [Mesorhizobium
opportunistum WSM2075]
Length = 139
Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats.
Identities = 50/127 (39%), Positives = 76/127 (59%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++ + RPLSPHL IYR TM +SI+HRITG +Y GT +V W A+ + +
Sbjct: 9 ANARRERPLSPHLTIYRPPITMTMSIIHRITGGALYFGTLLVAIWLMAAASSQGAFDWVN 68
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + LF YTWA++HHMLGG+R+L+WD L+K A+++A + SIL L+
Sbjct: 69 WAFGTWLGRLILFGYTWALMHHMLGGVRHLVWDTGAGLEKDTASKIAWATLAGSILLTLL 128
Query: 122 VWIIKDI 128
+W+ +
Sbjct: 129 IWVAGYM 135
>gi|327188889|gb|EGE56081.1| succinate dehydrogenase cytochrome B-556 subunit protein [Rhizobium
etli CNPAF512]
Length = 146
Score = 159 bits (404), Expect = 8e-38, Method: Composition-based stats.
Identities = 56/129 (43%), Positives = 91/129 (70%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ NNRPLSPHLQ+Y+LIPTM +SIVHRITG +Y+GT +V +W A+G+ +
Sbjct: 16 MANVTNNRPLSPHLQVYKLIPTMVMSIVHRITGGALYVGTLLVAWWLIAAASGQASYDWA 75
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + ++ L YTWA++HHMLGG R+L+WD+ +K+++T++A NII S+ +
Sbjct: 76 NWVLGSLLGKLVLLGYTWALLHHMLGGFRHLMWDLGYGFEKEVSTKLAIANIIGSLCLTV 135
Query: 121 IVWIIKDIV 129
+VW++ ++
Sbjct: 136 LVWVVGFLI 144
>gi|239833035|ref|ZP_04681364.1| succinate dehydrogenase, cytochrome b556 subunit [Ochrobactrum
intermedium LMG 3301]
gi|239825302|gb|EEQ96870.1| succinate dehydrogenase, cytochrome b556 subunit [Ochrobactrum
intermedium LMG 3301]
Length = 152
Score = 157 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 48/129 (37%), Positives = 78/129 (60%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
++ RPLSPHL IY+ + TM +SIVHRITG +Y GT ++ W A E +++
Sbjct: 23 QPTVTRQRPLSPHLSIYKPVITMTMSIVHRITGGALYFGTLLLAAWLISAAVSEECFNTV 82
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + LF YTWA++HH+ GG+R+LIWD L+K A+++A ++ S++ +
Sbjct: 83 NALFSSWIGRLILFGYTWALLHHLAGGVRHLIWDTGAGLEKHTASRIAWTTVVFSVIATI 142
Query: 121 IVWIIKDIV 129
+VW++ V
Sbjct: 143 LVWVVAYSV 151
>gi|13473609|ref|NP_105177.1| succinate dehydrogenase membrane anchor subunit [Mesorhizobium loti
MAFF303099]
gi|14024359|dbj|BAB50963.1| succinate dehydrogenase membrane anchor subunit [Mesorhizobium loti
MAFF303099]
Length = 139
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 51/124 (41%), Positives = 76/124 (61%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RPLSPHL IYR TM +SI+HRITG +Y GT +V W A+ + T +
Sbjct: 12 RRERPLSPHLTIYRPPITMTMSIIHRITGGALYFGTLLVAIWLMAAASSQATFDWVNWAF 71
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ + LF YTWA++HHMLGG+R+L+WD L+K A+++A ++ S+L L++WI
Sbjct: 72 GTWLGRLILFGYTWALMHHMLGGVRHLVWDTGAGLEKHTASKIAWATLVGSVLLTLLIWI 131
Query: 125 IKDI 128
+
Sbjct: 132 AGYM 135
>gi|227823652|ref|YP_002827625.1| putative succinate dehydrogenase membrane anchor subunit
[Sinorhizobium fredii NGR234]
gi|227342654|gb|ACP26872.1| putative succinate dehydrogenase membrane anchor subunit
[Sinorhizobium fredii NGR234]
Length = 130
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 58/129 (44%), Positives = 84/129 (65%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ +RPLSPHLQIY+ IPTM +SIVHRITG +Y GT +V +W A+G +
Sbjct: 1 MTNVTRSRPLSPHLQIYKPIPTMVMSIVHRITGGALYFGTILVAWWLIAAASGAAYYDWV 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ ++ LF YTWA++HHMLGGIR+ IWD+ +K AT+MAK + S+ L
Sbjct: 61 NWLFGTLIGKLVLFGYTWALVHHMLGGIRHFIWDLGYGYEKHFATKMAKGTLAGSVALTL 120
Query: 121 IVWIIKDIV 129
++WI+ +V
Sbjct: 121 LLWIVGSLV 129
>gi|325294014|ref|YP_004279878.1| succinate dehydrogenase cytochrome B-556 subunit [Agrobacterium sp.
H13-3]
gi|325061867|gb|ADY65558.1| succinate dehydrogenase cytochrome B-556 subunit [Agrobacterium sp.
H13-3]
Length = 130
Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 58/129 (44%), Positives = 85/129 (65%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ NNRPLSPHLQIY+ IPTM SIVHRITG+ +Y GT +V +W +A+G +
Sbjct: 1 MANVTNNRPLSPHLQIYKPIPTMVASIVHRITGAALYFGTLLVAWWLIALASGPAYYDWV 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
M + ++ L YTWA++HHMLGG+R+ +WD+ +K T++AK +ASI
Sbjct: 61 SWAMGTIIGKLILIGYTWALVHHMLGGLRHFMWDLGHGFEKNFNTKLAKATFVASICLTA 120
Query: 121 IVWIIKDIV 129
++W+I IV
Sbjct: 121 LIWVIALIV 129
>gi|261220959|ref|ZP_05935240.1| succinate dehydrogenase cytochrome b556 subunit [Brucella ceti
B1/94]
gi|265996918|ref|ZP_06109475.1| succinate dehydrogenase cytochrome b556 subunit [Brucella ceti
M490/95/1]
gi|260919543|gb|EEX86196.1| succinate dehydrogenase cytochrome b556 subunit [Brucella ceti
B1/94]
gi|262551386|gb|EEZ07376.1| succinate dehydrogenase cytochrome b556 subunit [Brucella ceti
M490/95/1]
Length = 142
Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 78/129 (60%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
++ RPLSPHL IY+ + TM +SIVHRITG +Y GT ++ W A E +++
Sbjct: 13 QPTVTRQRPLSPHLSIYKPVITMTMSIVHRITGGALYFGTLLLAAWLISAATSEECFNTI 72
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + LF YTWA++HH+ GG+R+ IWD ++K A+++A +++ S++ +
Sbjct: 73 NALFSSWIGRLILFGYTWALLHHLAGGVRHFIWDTGAAMEKHTASKIAWASVVFSVVATI 132
Query: 121 IVWIIKDIV 129
+VW++ V
Sbjct: 133 LVWVVAYSV 141
>gi|260546025|ref|ZP_05821765.1| succinate dehydrogenase [Brucella abortus NCTC 8038]
gi|260562821|ref|ZP_05833307.1| succinate dehydrogenase [Brucella melitensis bv. 1 str. 16M]
gi|260567607|ref|ZP_05838077.1| succinate dehydrogenase [Brucella suis bv. 4 str. 40]
gi|260755583|ref|ZP_05867931.1| succinate dehydrogenase cytochrome b556 subunit [Brucella abortus
bv. 6 str. 870]
gi|260758809|ref|ZP_05871157.1| succinate dehydrogenase cytochrome b556 subunit [Brucella abortus
bv. 4 str. 292]
gi|260760533|ref|ZP_05872876.1| succinate dehydrogenase cytochrome b556 subunit [Brucella abortus
bv. 2 str. 86/8/59]
gi|260884609|ref|ZP_05896223.1| succinate dehydrogenase cytochrome b556 subunit [Brucella abortus
bv. 9 str. C68]
gi|261214856|ref|ZP_05929137.1| succinate dehydrogenase cytochrome b556 subunit [Brucella abortus
bv. 3 str. Tulya]
gi|261217733|ref|ZP_05932014.1| succinate dehydrogenase cytochrome b556 subunit [Brucella ceti
M13/05/1]
gi|261315053|ref|ZP_05954250.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
pinnipedialis M163/99/10]
gi|261316390|ref|ZP_05955587.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
pinnipedialis B2/94]
gi|261321419|ref|ZP_05960616.1| succinate dehydrogenase cytochrome b556 subunit [Brucella ceti
M644/93/1]
gi|261751052|ref|ZP_05994761.1| succinate dehydrogenase cytochrome b556 subunit [Brucella suis bv.
5 str. 513]
gi|261755614|ref|ZP_05999323.1| succinate dehydrogenase cytochrome b556 subunit [Brucella suis bv.
3 str. 686]
gi|261758847|ref|ZP_06002556.1| succinate dehydrogenase [Brucella sp. F5/99]
gi|265982914|ref|ZP_06095649.1| succinate dehydrogenase cytochrome b556 subunit [Brucella sp.
83/13]
gi|265987463|ref|ZP_06100020.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
pinnipedialis M292/94/1]
gi|265991935|ref|ZP_06104492.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
melitensis bv. 1 str. Rev.1]
gi|265993667|ref|ZP_06106224.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
melitensis bv. 3 str. Ether]
gi|265999292|ref|ZP_05465704.2| succinate dehydrogenase [Brucella melitensis bv. 2 str. 63/9]
gi|260096132|gb|EEW80008.1| succinate dehydrogenase [Brucella abortus NCTC 8038]
gi|260152837|gb|EEW87929.1| succinate dehydrogenase [Brucella melitensis bv. 1 str. 16M]
gi|260157125|gb|EEW92205.1| succinate dehydrogenase [Brucella suis bv. 4 str. 40]
gi|260669127|gb|EEX56067.1| succinate dehydrogenase cytochrome b556 subunit [Brucella abortus
bv. 4 str. 292]
gi|260670965|gb|EEX57786.1| succinate dehydrogenase cytochrome b556 subunit [Brucella abortus
bv. 2 str. 86/8/59]
gi|260675691|gb|EEX62512.1| succinate dehydrogenase cytochrome b556 subunit [Brucella abortus
bv. 6 str. 870]
gi|260874137|gb|EEX81206.1| succinate dehydrogenase cytochrome b556 subunit [Brucella abortus
bv. 9 str. C68]
gi|260916463|gb|EEX83324.1| succinate dehydrogenase cytochrome b556 subunit [Brucella abortus
bv. 3 str. Tulya]
gi|260922822|gb|EEX89390.1| succinate dehydrogenase cytochrome b556 subunit [Brucella ceti
M13/05/1]
gi|261294109|gb|EEX97605.1| succinate dehydrogenase cytochrome b556 subunit [Brucella ceti
M644/93/1]
gi|261295613|gb|EEX99109.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
pinnipedialis B2/94]
gi|261304079|gb|EEY07576.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
pinnipedialis M163/99/10]
gi|261738831|gb|EEY26827.1| succinate dehydrogenase [Brucella sp. F5/99]
gi|261740805|gb|EEY28731.1| succinate dehydrogenase cytochrome b556 subunit [Brucella suis bv.
5 str. 513]
gi|261745367|gb|EEY33293.1| succinate dehydrogenase cytochrome b556 subunit [Brucella suis bv.
3 str. 686]
gi|262764648|gb|EEZ10569.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
melitensis bv. 3 str. Ether]
gi|263003001|gb|EEZ15294.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
melitensis bv. 1 str. Rev.1]
gi|263093078|gb|EEZ17228.1| succinate dehydrogenase [Brucella melitensis bv. 2 str. 63/9]
gi|264659660|gb|EEZ29921.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
pinnipedialis M292/94/1]
gi|264661506|gb|EEZ31767.1| succinate dehydrogenase cytochrome b556 subunit [Brucella sp.
83/13]
Length = 142
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 78/129 (60%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
++ RPLSPHL IY+ + TM +SIVHRITG +Y GT ++ W A E +++
Sbjct: 13 QPTVTRQRPLSPHLSIYKPVITMTMSIVHRITGGALYFGTLLLAAWLISAATSEECFNTI 72
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + LF YTWA++HH+ GG+R+ IWD ++K A+++A +++ S++ +
Sbjct: 73 NALFSSWIGRLILFGYTWALLHHLAGGVRHFIWDTGAAMEKHTASKIAWASVVFSVVATI 132
Query: 121 IVWIIKDIV 129
+VW++ V
Sbjct: 133 LVWVVAYSV 141
>gi|15966825|ref|NP_387178.1| succinate dehydrogenase cytochrome B-556 subunit transmembrane
protein [Sinorhizobium meliloti 1021]
gi|307301653|ref|ZP_07581412.1| succinate dehydrogenase, cytochrome b556 subunit [Sinorhizobium
meliloti BL225C]
gi|307316323|ref|ZP_07595767.1| succinate dehydrogenase, cytochrome b556 subunit [Sinorhizobium
meliloti AK83]
gi|15076097|emb|CAC47651.1| Probable succinate dehydrogenase cytochrome B-556 subunit
transmembrane protein [Sinorhizobium meliloti 1021]
gi|306898163|gb|EFN28905.1| succinate dehydrogenase, cytochrome b556 subunit [Sinorhizobium
meliloti AK83]
gi|306903351|gb|EFN33940.1| succinate dehydrogenase, cytochrome b556 subunit [Sinorhizobium
meliloti BL225C]
Length = 130
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 57/128 (44%), Positives = 84/128 (65%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ +RPLSPHLQIY+ IPTM +SI+HRITG +Y GT +V +W A+G +
Sbjct: 1 MTNVTRSRPLSPHLQIYKPIPTMIMSIMHRITGGALYFGTVLVAWWLIAAASGTAYYDWV 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ +V LF YTWA++HH+LGGIR+L WD+ +K AT+MAK I+AS L
Sbjct: 61 NWLFGTFIGKVVLFGYTWALVHHLLGGIRHLAWDLGYGYEKHFATRMAKAMIVASATLTL 120
Query: 121 IVWIIKDI 128
++W++ +
Sbjct: 121 VIWVVGYL 128
>gi|114328744|ref|YP_745901.1| succinate dehydrogenase cytochrome b556 subunit [Granulibacter
bethesdensis CGDNIH1]
gi|114316918|gb|ABI62978.1| succinate dehydrogenase cytochrome b556 subunit [Granulibacter
bethesdensis CGDNIH1]
Length = 197
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 43/122 (35%), Positives = 69/122 (56%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHLQ+YR TM +SI+HR+TG +GT ++ +W A +H + +M
Sbjct: 75 RPLSPHLQVYRWPITMALSILHRVTGVAAAIGTLLLTWWLVAAATSDHAYDIVSGFMRSG 134
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKD 127
+ LF +T A+++H + GIR+L+WD DK A + + I + + L + +WI
Sbjct: 135 FGLLLLFGWTVALVYHFINGIRHLVWDAGYGFDKHEANRSSYIVLGLTALFTVAIWIAAA 194
Query: 128 IV 129
+V
Sbjct: 195 VV 196
>gi|304394275|ref|ZP_07376198.1| succinate dehydrogenase, cytochrome b556 subunit [Ahrensia sp.
R2A130]
gi|303293715|gb|EFL88092.1| succinate dehydrogenase, cytochrome b556 subunit [Ahrensia sp.
R2A130]
Length = 138
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 51/128 (39%), Positives = 77/128 (60%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+ + RPLSPHL+IY+ IPTM +SI+HR+TG+ +Y GT +V +W A+G +
Sbjct: 8 PTTRKPRPLSPHLEIYKPIPTMVMSILHRVTGAALYFGTILVAWWLLAAASGPEAFETAS 67
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + LF YT A+IHHMLGG+++L+ D LDK T+MAK + SI+ ++
Sbjct: 68 NFFGSWFGRLVLFGYTLALIHHMLGGMKHLVQDTGRGLDKDFTTKMAKAQPVLSIIITVL 127
Query: 122 VWIIKDIV 129
+W V
Sbjct: 128 IWFAAYAV 135
>gi|150398156|ref|YP_001328623.1| succinate dehydrogenase cytochrome b556 subunit [Sinorhizobium
medicae WSM419]
gi|150029671|gb|ABR61788.1| Succinate dehydrogenase cytochrome b556 subunit [Sinorhizobium
medicae WSM419]
Length = 130
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 57/128 (44%), Positives = 85/128 (66%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ +RPLSPHLQIY+ IPTM +SI+HRITG +Y GT +V +W A+G +
Sbjct: 1 MTNVTRSRPLSPHLQIYKPIPTMIMSIMHRITGGALYFGTVLVAWWLIAAASGTAYYDWV 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + +V LF YTWA++HH+LGGIR+L WD+ +K AT++AK I+AS L
Sbjct: 61 NWFFGTLIGKVVLFGYTWALMHHLLGGIRHLGWDLGYGYEKHFATRVAKAMIVASAALTL 120
Query: 121 IVWIIKDI 128
++WI+ +
Sbjct: 121 VIWIVGYL 128
>gi|319780753|ref|YP_004140229.1| succinate dehydrogenase cytochrome b556 subunit [Mesorhizobium
ciceri biovar biserrulae WSM1271]
gi|317166641|gb|ADV10179.1| succinate dehydrogenase, cytochrome b556 subunit [Mesorhizobium
ciceri biovar biserrulae WSM1271]
Length = 139
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 51/124 (41%), Positives = 74/124 (59%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RP+SPHL +YR TM +SI+HRITG +Y GT +V W A+ + T
Sbjct: 12 RRERPISPHLTVYRPPITMTMSIIHRITGGALYFGTLLVALWLMAAASSQATFDWANWAF 71
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ + LF YTWA++HHMLGG+R+LIWD L+K A+++A + SIL L++WI
Sbjct: 72 GTWLGRIILFGYTWALMHHMLGGVRHLIWDTGAGLEKHTASKIAWATLAGSILLTLLIWI 131
Query: 125 IKDI 128
+
Sbjct: 132 AGTM 135
>gi|222087469|ref|YP_002546006.1| succinate dehydrogenase, cytochrome b556 subunit [Agrobacterium
radiobacter K84]
gi|221724917|gb|ACM28073.1| succinate dehydrogenase, cytochrome b556 subunit [Agrobacterium
radiobacter K84]
Length = 133
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 56/129 (43%), Positives = 83/129 (64%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ NRPLSPHLQIY+ IPTM +SIVHRITG +Y GT +V +W A G+ +
Sbjct: 2 MANVTQNRPLSPHLQIYKPIPTMIMSIVHRITGGALYFGTVLVAWWLIAAATGQGYFELV 61
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
M + + LF YTWA++HHMLGG+R+ +WD+ K+ +T++AK ++ S+
Sbjct: 62 NWIMGTIIGRLVLFGYTWALLHHMLGGLRHFMWDLGYGFGKEFSTKLAKATLVGSLCLTA 121
Query: 121 IVWIIKDIV 129
+VWII +
Sbjct: 122 LVWIIGIAI 130
>gi|75676982|ref|YP_319403.1| succinate dehydrogenase, cytochrome b subunit [Nitrobacter
winogradskyi Nb-255]
gi|74421852|gb|ABA06051.1| succinate dehydrogenase subunit C [Nitrobacter winogradskyi Nb-255]
Length = 141
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 47/129 (36%), Positives = 76/129 (58%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M +++ RPLSPHLQIYR TM +SIVHR TG +Y GT ++V+W +++G +++
Sbjct: 8 MMTVRIERPLSPHLQIYRWTLTMTLSIVHRATGVALYFGTLLLVWWLMAVSSGPGAYAAV 67
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + + F YTWA++HHMLGG+R+L+WD+ + + +I IL
Sbjct: 68 QSFTSSWAGRLIAFGYTWALMHHMLGGVRHLVWDLGYGFQPTEREWLTRATLIGGILLTA 127
Query: 121 IVWIIKDIV 129
++WI +
Sbjct: 128 LLWIAAYAI 136
>gi|86359478|ref|YP_471370.1| succinate dehydrogenase cytochrome B-556 subunit protein [Rhizobium
etli CFN 42]
gi|190893746|ref|YP_001980288.1| succinate dehydrogenase, cytochrome b subunit [Rhizobium etli CIAT
652]
gi|218515347|ref|ZP_03512187.1| succinate dehydrogenase protein, cytochrome b subunit [Rhizobium
etli 8C-3]
gi|86283580|gb|ABC92643.1| succinate dehydrogenase cytochrome B-556 subunit protein [Rhizobium
etli CFN 42]
gi|190699025|gb|ACE93110.1| succinate dehydrogenase protein, cytochrome b subunit [Rhizobium
etli CIAT 652]
Length = 131
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 57/129 (44%), Positives = 91/129 (70%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ NNRPLSPHLQ+Y+LIPTM +SIVHRITG +Y+GT +V +W A+G+ +
Sbjct: 1 MANVTNNRPLSPHLQVYKLIPTMVMSIVHRITGGALYVGTLLVAWWLIAAASGQASYDWA 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + ++ L YTWA++HHMLGG R+L+WD+ +K+++T++A NII S+ +
Sbjct: 61 NWVLGSLLGKLVLLGYTWALLHHMLGGFRHLMWDLGYGFEKEVSTKLAIANIIGSLCLTV 120
Query: 121 IVWIIKDIV 129
+VW+I ++
Sbjct: 121 LVWVIGFLI 129
>gi|153008286|ref|YP_001369501.1| succinate dehydrogenase cytochrome b556 subunit [Ochrobactrum
anthropi ATCC 49188]
gi|151560174|gb|ABS13672.1| Succinate dehydrogenase cytochrome b556 subunit [Ochrobactrum
anthropi ATCC 49188]
Length = 132
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 48/129 (37%), Positives = 77/129 (59%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
++ RPLSPHL IY+ + TM +SIVHRITG +Y GT ++ W A E + +
Sbjct: 3 QPTVTRQRPLSPHLSIYKPVITMTMSIVHRITGGALYFGTLLLAAWLISAAVSEECFNFV 62
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + LF YTWA++HH+ GG+R+LIWD L+K A+++A ++ S++ +
Sbjct: 63 NALFSSWIGRLILFGYTWALLHHLAGGVRHLIWDTGAGLEKHTASKIAWATVVFSVIATI 122
Query: 121 IVWIIKDIV 129
+VW++ V
Sbjct: 123 LVWVVAYSV 131
>gi|254470646|ref|ZP_05084049.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudovibrio sp.
JE062]
gi|211959788|gb|EEA94985.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudovibrio sp.
JE062]
Length = 132
Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 57/128 (44%), Positives = 81/128 (63%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+ +K NRPLSPHLQIY+ I TM +SI+HRITG+ +Y GT ++ FW C A G +
Sbjct: 4 ADLKANRPLSPHLQIYKPIVTMVMSILHRITGAALYFGTILMAFWLVCAAAGPESYQFAM 63
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ ++ LF +TWA++HHMLGG+R+ +WD+ D A MA+ II S+ +I
Sbjct: 64 DVFGSFLGQLVLFGFTWALVHHMLGGLRHFVWDMGHGFDLSAANWMARATIIGSVSLTVI 123
Query: 122 VWIIKDIV 129
+WII IV
Sbjct: 124 LWIIGFIV 131
>gi|159185307|ref|NP_355582.2| succinate dehydrogenase cytochrome B-556 subunit [Agrobacterium
tumefaciens str. C58]
gi|159140565|gb|AAK88367.2| succinate dehydrogenase cytochrome B-556 subunit [Agrobacterium
tumefaciens str. C58]
Length = 130
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 59/129 (45%), Positives = 84/129 (65%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ NNRPLSPHLQIY+ IPTM SIVHRITG +Y GT +V +W +A+G +
Sbjct: 1 MANVTNNRPLSPHLQIYKPIPTMVASIVHRITGGALYFGTLLVAWWLIALASGPAYYDWV 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
M + + L YTWA++HHMLGG+R+ +WD+ DK T++AK + +ASI
Sbjct: 61 NWAMGTIIGRLILIGYTWALVHHMLGGLRHFMWDLGHGFDKHFTTKLAKASWVASICLTA 120
Query: 121 IVWIIKDIV 129
++W+I IV
Sbjct: 121 LIWVIVLIV 129
>gi|209551264|ref|YP_002283181.1| succinate dehydrogenase, cytochrome b556 subunit [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|241206664|ref|YP_002977760.1| succinate dehydrogenase, cytochrome b556 subunit [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|209537020|gb|ACI56955.1| succinate dehydrogenase, cytochrome b556 subunit [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|240860554|gb|ACS58221.1| succinate dehydrogenase, cytochrome b556 subunit [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 131
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 56/129 (43%), Positives = 87/129 (67%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ NNRPLSPHLQIY+ IPTM +SIVHRITG +Y+GT +V +W A+G+ +
Sbjct: 1 MANVTNNRPLSPHLQIYKPIPTMVMSIVHRITGGALYVGTLLVAWWLIAAASGQGSYDWA 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + ++ L YTWA++HHMLGG R+ +WD+ K+ +T++A NII S+ +
Sbjct: 61 NWVLGSLLGKLVLLGYTWALLHHMLGGFRHFMWDLGYGFGKEFSTKLAIANIIGSLCLTV 120
Query: 121 IVWIIKDIV 129
+VW+I ++
Sbjct: 121 LVWVIGFLI 129
>gi|218682066|ref|ZP_03529667.1| succinate dehydrogenase, cytochrome b556 subunit [Rhizobium etli
CIAT 894]
Length = 131
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 56/129 (43%), Positives = 86/129 (66%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ NNRPLSPHLQIY+ IPTM +SIVHRITG +Y+GT +V +W A+G+ +
Sbjct: 1 MANVTNNRPLSPHLQIYKPIPTMVMSIVHRITGGALYVGTLLVAWWLIAAASGQGSYDWA 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + + L YTWA++HHMLGG R+ +WD+ K+ +T++A NII S+ +
Sbjct: 61 NWVLGSLLGKFVLLGYTWALLHHMLGGFRHFMWDLGYGFGKEFSTKLAIANIIGSLCLTV 120
Query: 121 IVWIIKDIV 129
+VW+I ++
Sbjct: 121 LVWVIGFLI 129
>gi|116254178|ref|YP_770016.1| succinate dehydrogenase cytochrome b556 subunit [Rhizobium
leguminosarum bv. viciae 3841]
gi|115258826|emb|CAK09932.1| putative succinate dehydrogenase cytochrome b556 subunit [Rhizobium
leguminosarum bv. viciae 3841]
Length = 131
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 56/129 (43%), Positives = 87/129 (67%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ NNRPLSPHLQIY+ IPTM +SIVHRITG +Y+GT +V +W A+G+ +
Sbjct: 1 MANVTNNRPLSPHLQIYKPIPTMIMSIVHRITGGALYVGTILVAWWLIAAASGQGSYDWA 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + ++ L YTWA++HHMLGG R+ +WD+ K+ +T++A NII S+ +
Sbjct: 61 NWVLGSLLGKLVLLGYTWALLHHMLGGFRHFMWDLGYGFGKEFSTKLAIANIIGSLCLTV 120
Query: 121 IVWIIKDIV 129
+VW+I ++
Sbjct: 121 LVWVIGFLI 129
>gi|90421134|ref|ZP_01229036.1| succinate dehydrogenase, cytochrome b subunit [Aurantimonas
manganoxydans SI85-9A1]
gi|90334626|gb|EAS48406.1| succinate dehydrogenase, cytochrome b subunit [Aurantimonas
manganoxydans SI85-9A1]
Length = 130
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 58/124 (46%), Positives = 83/124 (66%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
MS +K RPLSPHL IYR PTM +SI+HRITGS +Y+GT + V+W A+G S
Sbjct: 1 MSDLKTARPLSPHLSIYRFRPTMAMSILHRITGSALYVGTLLFVWWLIAAASGPEAFSYA 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + + LF YTWA++HHM GGIR+LIWD + L K+ +T++A+ ++AS+ L
Sbjct: 61 SAFFGSIIGRIILFGYTWALLHHMFGGIRHLIWDTGIGLSKETSTKLAQATLVASLALTL 120
Query: 121 IVWI 124
I+W+
Sbjct: 121 ILWV 124
>gi|256158405|ref|ZP_05456303.1| Succinate dehydrogenase [Brucella ceti M490/95/1]
gi|256253825|ref|ZP_05459361.1| Succinate dehydrogenase [Brucella ceti B1/94]
Length = 132
Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 78/129 (60%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
++ RPLSPHL IY+ + TM +SIVHRITG +Y GT ++ W A E +++
Sbjct: 3 QPTVTRQRPLSPHLSIYKPVITMTMSIVHRITGGALYFGTLLLAAWLISAATSEECFNTI 62
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + LF YTWA++HH+ GG+R+ IWD ++K A+++A +++ S++ +
Sbjct: 63 NALFSSWIGRLILFGYTWALLHHLAGGVRHFIWDTGAAMEKHTASKIAWASVVFSVVATI 122
Query: 121 IVWIIKDIV 129
+VW++ V
Sbjct: 123 LVWVVAYSV 131
>gi|17986443|ref|NP_539077.1| succinate dehydrogenase cytochrome B-556 subunit [Brucella
melitensis bv. 1 str. 16M]
gi|23502755|ref|NP_698882.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella suis
1330]
gi|62290760|ref|YP_222553.1| SdhC, succinate dehydrogenase, cytochrome b556 subunit [Brucella
abortus bv. 1 str. 9-941]
gi|82700671|ref|YP_415245.1| succinate dehydrogenase, cytochrome subunit B [Brucella melitensis
biovar Abortus 2308]
gi|161619821|ref|YP_001593708.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella canis
ATCC 23365]
gi|163843927|ref|YP_001628331.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella suis
ATCC 23445]
gi|225853341|ref|YP_002733574.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
melitensis ATCC 23457]
gi|254690049|ref|ZP_05153303.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella abortus
bv. 6 str. 870]
gi|254694537|ref|ZP_05156365.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella abortus
bv. 3 str. Tulya]
gi|254696162|ref|ZP_05157990.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella abortus
bv. 2 str. 86/8/59]
gi|254700548|ref|ZP_05162376.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella suis bv.
5 str. 513]
gi|254704918|ref|ZP_05166746.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella suis bv.
3 str. 686]
gi|254707568|ref|ZP_05169396.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella
pinnipedialis M163/99/10]
gi|254708895|ref|ZP_05170706.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella
pinnipedialis B2/94]
gi|254713680|ref|ZP_05175491.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella ceti
M644/93/1]
gi|254715969|ref|ZP_05177780.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella ceti
M13/05/1]
gi|254717971|ref|ZP_05179782.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella sp.
83/13]
gi|254731080|ref|ZP_05189658.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella abortus
bv. 4 str. 292]
gi|256030421|ref|ZP_05444035.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella
pinnipedialis M292/94/1]
gi|256045512|ref|ZP_05448395.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella
melitensis bv. 1 str. Rev.1]
gi|256059880|ref|ZP_05450067.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella neotomae
5K33]
gi|256112239|ref|ZP_05453160.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella
melitensis bv. 3 str. Ether]
gi|256258302|ref|ZP_05463838.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella abortus
bv. 9 str. C68]
gi|256370306|ref|YP_003107817.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella microti
CCM 4915]
gi|260169332|ref|ZP_05756143.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella sp.
F5/99]
gi|294851145|ref|ZP_06791818.1| succinate dehydrogenase [Brucella sp. NVSL 07-0026]
gi|306838923|ref|ZP_07471750.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella sp. NF
2653]
gi|306842942|ref|ZP_07475576.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella sp. BO2]
gi|306843359|ref|ZP_07475960.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella sp. BO1]
gi|17982039|gb|AAL51341.1| succinate dehydrogenase cytochrome b-556 subunit [Brucella
melitensis bv. 1 str. 16M]
gi|23348773|gb|AAN30797.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella suis
1330]
gi|62196892|gb|AAX75192.1| SdhC, succinate dehydrogenase, cytochrome b556 subunit [Brucella
abortus bv. 1 str. 9-941]
gi|82616772|emb|CAJ11859.1| Succinate dehydrogenase, cytochrome b subunit [Brucella melitensis
biovar Abortus 2308]
gi|161336632|gb|ABX62937.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella canis
ATCC 23365]
gi|163674650|gb|ABY38761.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella suis
ATCC 23445]
gi|225641706|gb|ACO01620.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella
melitensis ATCC 23457]
gi|256000469|gb|ACU48868.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella microti
CCM 4915]
gi|294819734|gb|EFG36733.1| succinate dehydrogenase [Brucella sp. NVSL 07-0026]
gi|306276050|gb|EFM57750.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella sp. BO1]
gi|306286870|gb|EFM58395.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella sp. BO2]
gi|306405993|gb|EFM62245.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella sp. NF
2653]
gi|326409905|gb|ADZ66970.1| succinate dehydrogenase cytochrome b556 subunit [Brucella
melitensis M28]
gi|326539618|gb|ADZ87833.1| succinate dehydrogenase, cytochrome b556 subunit [Brucella
melitensis M5-90]
Length = 132
Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 78/129 (60%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
++ RPLSPHL IY+ + TM +SIVHRITG +Y GT ++ W A E +++
Sbjct: 3 QPTVTRQRPLSPHLSIYKPVITMTMSIVHRITGGALYFGTLLLAAWLISAATSEECFNTI 62
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + LF YTWA++HH+ GG+R+ IWD ++K A+++A +++ S++ +
Sbjct: 63 NALFSSWIGRLILFGYTWALLHHLAGGVRHFIWDTGAAMEKHTASKIAWASVVFSVVATI 122
Query: 121 IVWIIKDIV 129
+VW++ V
Sbjct: 123 LVWVVAYSV 131
>gi|146337397|ref|YP_001202445.1| succinate dehydrogenase cytochrome b556 subunit [Bradyrhizobium sp.
ORS278]
gi|146190203|emb|CAL74195.1| Succinate dehydrogenase cytochrome b556 subunit [Bradyrhizobium sp.
ORS278]
Length = 132
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 46/127 (36%), Positives = 71/127 (55%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ + RPLSPHLQ YR TM +SIVHR TG +Y GT ++ +W A+G S ++
Sbjct: 2 TARIERPLSPHLQTYRWTLTMILSIVHRATGVALYFGTLLLAWWLIAAASGPSAYSYVQG 61
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+M + + +F YTWA++HH+L GIR+ +WD+ + +I I ++V
Sbjct: 62 FMGSFLGRLIVFGYTWALLHHLLSGIRHFVWDLGYGFKPNERETLTWGALIGGISLTVLV 121
Query: 123 WIIKDIV 129
WI+ V
Sbjct: 122 WIVAYAV 128
>gi|114320488|ref|YP_742171.1| succinate dehydrogenase subunit C [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226882|gb|ABI56681.1| succinate dehydrogenase subunit C [Alkalilimnicola ehrlichii
MLHE-1]
Length = 130
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 67/112 (59%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+NRPLSPHLQ+Y+ T +SI HR +G V+ LG+ ++V+W +A G +++
Sbjct: 2 QTDNRPLSPHLQVYKPQLTSVLSICHRGSGVVLALGSIILVWWLSALAAGPEAFATVNGV 61
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ + +V LFL+T A+ +H+ GIR+L+WD + + + + +IAS
Sbjct: 62 VGSFIGKVILFLFTLALFYHLCNGIRHLVWDTGRGFELESVYRSGYLVVIAS 113
>gi|92119075|ref|YP_578804.1| succinate dehydrogenase, cytochrome b subunit [Nitrobacter
hamburgensis X14]
gi|91801969|gb|ABE64344.1| succinate dehydrogenase subunit C [Nitrobacter hamburgensis X14]
Length = 132
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 77/127 (60%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+++ RPLSPHLQIYR TM +S+VHR TG +Y GT ++V+W +++G ++++
Sbjct: 2 TVRIERPLSPHLQIYRWTLTMALSVVHRATGMALYFGTLLLVWWLIAVSSGPGAYAAVQS 61
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + + F YTWA++HHML G+R+L+WD+ + + +I IL +++
Sbjct: 62 FTASWIGRLIAFGYTWALMHHMLSGVRHLVWDLGYGFKPAEREWLTRAALIGGILLTVLL 121
Query: 123 WIIKDIV 129
WI+ V
Sbjct: 122 WIVAYAV 128
>gi|118590533|ref|ZP_01547935.1| succinate dehydrogenase cytochrome B-556 subunit [Stappia aggregata
IAM 12614]
gi|118436996|gb|EAV43635.1| succinate dehydrogenase cytochrome B-556 subunit [Stappia aggregata
IAM 12614]
Length = 132
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 54/128 (42%), Positives = 78/128 (60%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+ ++ NRPLSPHLQIY+ I TM +SI+HRITG+ +Y GT ++ +W A G +
Sbjct: 4 ADLRGNRPLSPHLQIYKPILTMVMSILHRITGAALYFGTVLLAWWLIAAAAGPSYFDFVN 63
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + LF +TWA++HHMLGG+R+ IWD+ K+ +AK II S+ LI
Sbjct: 64 GIYGSIIGRLILFGFTWALVHHMLGGLRHFIWDMGAGFGKEAREWLAKATIIGSVSVTLI 123
Query: 122 VWIIKDIV 129
+WII V
Sbjct: 124 LWIIGYAV 131
>gi|85714477|ref|ZP_01045465.1| succinate dehydrogenase, cytochrome b subunit [Nitrobacter sp.
Nb-311A]
gi|85698924|gb|EAQ36793.1| succinate dehydrogenase, cytochrome b subunit [Nitrobacter sp.
Nb-311A]
Length = 133
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 75/127 (59%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+++ RPLSPHLQIYR TM +SIVHR TG +Y GT ++V+W +++G ++++
Sbjct: 2 TVRIERPLSPHLQIYRWTLTMALSIVHRATGVALYFGTLLLVWWLMAVSSGPGAYAAVQS 61
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + F YTWA++HHML G+R+L+WD+ + + +I IL +++
Sbjct: 62 FTSSWAGRLIAFGYTWALMHHMLSGVRHLVWDLGYGFKPTEREWLTRAALIGGILLTVLL 121
Query: 123 WIIKDIV 129
WI +
Sbjct: 122 WIAVYAI 128
>gi|307942783|ref|ZP_07658128.1| succinate dehydrogenase, cytochrome b556 subunit [Roseibium sp.
TrichSKD4]
gi|307773579|gb|EFO32795.1| succinate dehydrogenase, cytochrome b556 subunit [Roseibium sp.
TrichSKD4]
Length = 132
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 50/128 (39%), Positives = 77/128 (60%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+ + NRPLSPHLQIY+ I TM +SI+HRITG+ +Y GT ++ +W A G +
Sbjct: 4 ADSRGNRPLSPHLQIYKPILTMVMSILHRITGAALYFGTVLLAWWLIAAAAGPTYFEFVN 63
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + LF +TWA++HHMLGG+R+ IWD+ ++ +A+ II S+ ++
Sbjct: 64 EIYSSFIGRLILFGFTWALVHHMLGGLRHFIWDMGAGFGREAREWLARATIIGSVGLTIL 123
Query: 122 VWIIKDIV 129
+WII V
Sbjct: 124 LWIIGYAV 131
>gi|27375623|ref|NP_767152.1| succinate dehydrogenase cytochrome B-556 subunit [Bradyrhizobium
japonicum USDA 110]
gi|3169722|gb|AAC17940.1| succinate dehydrogenase membrane anchor subunit [Bradyrhizobium
japonicum]
gi|27348760|dbj|BAC45777.1| succinate dehydrogenase cytochrome B-556 subunit [Bradyrhizobium
japonicum USDA 110]
Length = 132
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 72/127 (56%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ + RPLSPH+Q+YR TM +SIVHR TG +Y GT ++ +W A+G S ++
Sbjct: 2 TARIERPLSPHMQVYRWTLTMALSIVHRATGIALYAGTLLLAWWLIAAASGPAAYSHVQA 61
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + + +F YTWA++HHML GIR+ +WD+ + +I I+ +++
Sbjct: 62 FTGSIIGRLIVFGYTWALMHHMLSGIRHFVWDLGYGFKANEREALTWGALIGGIVLTVLI 121
Query: 123 WIIKDIV 129
WI+ +
Sbjct: 122 WIVAYAI 128
>gi|209967178|ref|YP_002300093.1| succinate dehydrogenase, cytochrome b556, putative [Rhodospirillum
centenum SW]
gi|209960644|gb|ACJ01281.1| succinate dehydrogenase, cytochrome b556, putative [Rhodospirillum
centenum SW]
Length = 138
Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 60/124 (48%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YRL SI HR+TG + GT ++ +W A G ++++
Sbjct: 14 RPRPLSPHLQVYRLPLPAIASITHRVTGVGLAAGTLLLAWWLIAAATGPEAFATVQAVAG 73
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ +CL + WA +H + G+R+L+WD L+ + + SI + I+
Sbjct: 74 SPLGLLCLLGWVWAFWYHAMNGVRHLLWDAGYGLELGPVYRGGYLVWGGSIGLTVATAIV 133
Query: 126 KDIV 129
V
Sbjct: 134 AFSV 137
>gi|328541811|ref|YP_004301920.1| Succinate dehydrogenase, cytochrome b556 subunit [polymorphum
gilvum SL003B-26A1]
gi|326411563|gb|ADZ68626.1| Succinate dehydrogenase, cytochrome b556 subunit [Polymorphum
gilvum SL003B-26A1]
Length = 132
Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 50/125 (40%), Positives = 77/125 (61%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHLQIY+ I TM +SI+HRITG+ +Y GT ++ +W A G +
Sbjct: 7 QGNRPLSPHLQIYKPILTMVMSILHRITGAALYFGTLLLAWWLIAAAAGPAYFDFVNGIY 66
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ + LF +TWA++HHMLGGIR+ IWD+ ++ +A+ II S+ +++WI
Sbjct: 67 GSILGRLVLFGFTWALVHHMLGGIRHFIWDMGAGFGREAREWLARATIIGSVAVTILLWI 126
Query: 125 IKDIV 129
+ +V
Sbjct: 127 VGYMV 131
>gi|159045407|ref|YP_001534201.1| putative succinate dehydrogenase cytochrome subunit B
[Dinoroseobacter shibae DFL 12]
gi|157913167|gb|ABV94600.1| putative succinate dehydrogenase cytochrome b subunit
[Dinoroseobacter shibae DFL 12]
Length = 127
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 61/118 (51%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RPLSPH+QIYR T SI+ RITG+ + +G + V+W A G + + +
Sbjct: 6 RGDRPLSPHIQIYRPQLTSVTSILTRITGNALLVGALLCVWWLIAAAAGPEYFAFVDGLV 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
++ WA+ +H L G+R+LIWD + K A + + I S++ +I
Sbjct: 66 TSWFGKLVFLGSIWALWYHTLAGVRHLIWDAGYGFELKDAYALGYMVIGGSVVLTVIT 123
>gi|114707253|ref|ZP_01440151.1| succinate dehydrogenase cytochrome B-556 subunit protein
[Fulvimarina pelagi HTCC2506]
gi|114537449|gb|EAU40575.1| succinate dehydrogenase cytochrome B-556 subunit protein
[Fulvimarina pelagi HTCC2506]
Length = 129
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 53/124 (42%), Positives = 79/124 (63%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
MS +K+NRPLSPHL IY+ PTM +SIVHRITG +Y GT ++V+W A+GE +
Sbjct: 1 MSDVKSNRPLSPHLSIYKFRPTMAMSIVHRITGGALYFGTILIVWWLIAAASGEAAFETA 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + + L Y+WA+ HH LGGIR+ IWD L K+ +T+ A++ ++ S+
Sbjct: 61 SWFFGSFIGILILMGYSWALFHHALGGIRHFIWDTGHGLSKETSTKFAQMTLVGSLGLTA 120
Query: 121 IVWI 124
I+W+
Sbjct: 121 ILWL 124
>gi|217979669|ref|YP_002363816.1| succinate dehydrogenase, cytochrome b556 subunit [Methylocella
silvestris BL2]
gi|217505045|gb|ACK52454.1| succinate dehydrogenase, cytochrome b556 subunit [Methylocella
silvestris BL2]
Length = 131
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 72/117 (61%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHLQIYR TM +SIVHRITG+ +Y GT ++ ++ A+G ++ +
Sbjct: 9 RPLSPHLQIYRPTLTMMMSIVHRITGAALYGGTLLLAWFLISAASGPGAFAAASHVVSSF 68
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
++ LF +TWA+ HH+LGG+R+LIWD+ LD +A +I I L+VW+
Sbjct: 69 FGKLVLFGFTWALFHHLLGGVRHLIWDLGYGLDDPEREWLAWATLIGGIALTLLVWV 125
>gi|182679666|ref|YP_001833812.1| succinate dehydrogenase, cytochrome b556 subunit [Beijerinckia
indica subsp. indica ATCC 9039]
gi|182635549|gb|ACB96323.1| succinate dehydrogenase, cytochrome b556 subunit [Beijerinckia
indica subsp. indica ATCC 9039]
Length = 137
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 49/126 (38%), Positives = 76/126 (60%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ N RPLSPHL IYR + TM +SIVHRITG+ +YLGT ++ ++ A+G ++ +
Sbjct: 11 VGNQRPLSPHLLIYRPMLTMMMSIVHRITGAALYLGTLLLAWYLIAAASGPEAFATASIF 70
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + ++ L +TWA+ HH LGG+R++IWD D +A+ +I IL L VW
Sbjct: 71 FNSILGKLILLGFTWALFHHFLGGVRHMIWDAGYGFDAAGREFLAQATLIGGILLTLFVW 130
Query: 124 IIKDIV 129
I+ +
Sbjct: 131 ILAYFI 136
>gi|254487864|ref|ZP_05101069.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter sp.
GAI101]
gi|214044733|gb|EEB85371.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter sp.
GAI101]
Length = 127
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 65/121 (53%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL IYR T SI+ RITG+ + + ++V+WF A ++ ++
Sbjct: 6 RGNRPLSPHLTIYRPQLTSMTSILTRITGNAMLVAALLIVWWFLAAATSPEAFAAANGFI 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
++ +F + +H L GIR+LIWD LD + A ++ ++ S+L +I +
Sbjct: 66 TSWFGDLIMFFSLLGLWYHTLAGIRHLIWDNGYGLDIQTAEKLGWAALVGSVLLTIITAL 125
Query: 125 I 125
I
Sbjct: 126 I 126
>gi|115522538|ref|YP_779449.1| succinate dehydrogenase, cytochrome b subunit [Rhodopseudomonas
palustris BisA53]
gi|115516485|gb|ABJ04469.1| succinate dehydrogenase subunit C [Rhodopseudomonas palustris
BisA53]
Length = 132
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 69/125 (55%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RPLSPH+Q YR TM +SIVHR TG +Y GT V+ +W + G ++++ +
Sbjct: 4 RIERPLSPHMQAYRWTLTMTLSIVHRATGVALYFGTLVLAWWLIAVGAGPGAYANVQAFT 63
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ ++ +F YTW+++HH L GIR+ +WD+ + +I ++ +++W+
Sbjct: 64 GSWIGKLIMFGYTWSLMHHFLSGIRHFVWDLGYGYKPADRELLTWAALIGGVVLTVLLWV 123
Query: 125 IKDIV 129
+
Sbjct: 124 AAFAL 128
>gi|83313049|ref|YP_423313.1| succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Magnetospirillum magneticum AMB-1]
gi|82947890|dbj|BAE52754.1| Succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Magnetospirillum magneticum AMB-1]
Length = 125
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 64/123 (52%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
RPLSPH+Q+YR+ T +SI HRITG + +GT V+ +W A G +
Sbjct: 2 TTRTRPLSPHIQVYRMPFTAILSISHRITGVALAVGTVVLAYWLASAAYGPVAYGHAQAV 61
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + ++ LF +T A+ +H+ GIR+L WD + A + ++ + A+ ++ W
Sbjct: 62 LGSWLGKLVLFGWTAALFYHLCNGIRHLFWDKGRGYEIAEADKSGRMVVGAAAALTVLAW 121
Query: 124 IIK 126
I
Sbjct: 122 IFG 124
>gi|294085393|ref|YP_003552153.1| succinate dehydrogenase subunit C [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292664968|gb|ADE40069.1| succinate dehydrogenase subunit C [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 123
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 63/122 (51%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RPLSPHLQIY+ T +SI HR TG V+ GT +V W +A GE + +
Sbjct: 1 MSKPRPLSPHLQIYKPQMTSVLSICHRATGVVLATGTGLVCLWLIALALGEDSFALATMI 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + + LF Y+ + +H GIR+L WD+ L+ +I + A+++ I W
Sbjct: 61 IQHPLGQFVLFGYSAVLFYHACNGIRHLAWDMGYGLEIPQVYATGRIVLAATVILTGIFW 120
Query: 124 II 125
+
Sbjct: 121 FL 122
>gi|254510339|ref|ZP_05122406.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacteraceae
bacterium KLH11]
gi|221534050|gb|EEE37038.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacteraceae
bacterium KLH11]
Length = 184
Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 1 MSSI-KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
M+ + + NRPLSPHL IYR T SI+ RITG+ + L ++V+WF A +
Sbjct: 57 MADVNRGNRPLSPHLSIYRPQLTSVTSILTRITGNAMLLAALLIVWWFLAAATSPEAFAR 116
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
++ + ++ + L W + +H L GIR+LIWD + LD AT++ +I S
Sbjct: 117 ANWWLTSILGDLVMALSLWGLWYHTLAGIRHLIWDNAYGLDIPTATKLGWAVVIGS 172
>gi|153868748|ref|ZP_01998495.1| Succinate dehydrogenase, cytochrome b subunit [Beggiatoa sp. PS]
gi|152074659|gb|EDN71493.1| Succinate dehydrogenase, cytochrome b subunit [Beggiatoa sp. PS]
Length = 130
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 43/122 (35%), Positives = 65/122 (53%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+PLSPHLQIY+ T +SI+HRITG + LGT V+V+W A G T + ++
Sbjct: 2 TKQPLSPHLQIYKPQLTSIMSILHRITGVFLSLGTLVLVYWLMAAAEGPETYQQAQNFLR 61
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
LF ++ A+ +H+ GIR+L WD L LD K + I + L ++ W++
Sbjct: 62 SWWGLFLLFGWSLALFYHLCNGIRHLFWDAGLGLDIKTVYITGSLVWIMTFLLTILTWVL 121
Query: 126 KD 127
Sbjct: 122 AF 123
>gi|39933296|ref|NP_945572.1| succinate dehydrogenase cytochrome b subunit [Rhodopseudomonas
palustris CGA009]
gi|192288649|ref|YP_001989254.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodopseudomonas
palustris TIE-1]
gi|39652921|emb|CAE25663.1| succinate dehydrogenase membrane anchor/cytochrome b subunit
[Rhodopseudomonas palustris CGA009]
gi|192282398|gb|ACE98778.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodopseudomonas
palustris TIE-1]
Length = 132
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 70/125 (56%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ + RPLSPH+Q YR TM +SIVHR TG +Y GT ++ +W A G ++++
Sbjct: 2 TARIERPLSPHMQAYRWSLTMTMSIVHRATGIALYSGTLLLAWWLIACAAGPTAYANVQA 61
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + + +F YTW+++HHML G+R+ +WD+ + +I I+ +++
Sbjct: 62 FTGSWIGRLIVFGYTWSLMHHMLSGVRHFVWDLGYGFKTADREWLTWAALIGGIVLTVLL 121
Query: 123 WIIKD 127
W+I
Sbjct: 122 WVIAY 126
>gi|154245910|ref|YP_001416868.1| succinate dehydrogenase cytochrome b556 subunit [Xanthobacter
autotrophicus Py2]
gi|154159995|gb|ABS67211.1| Succinate dehydrogenase cytochrome b556 subunit [Xanthobacter
autotrophicus Py2]
Length = 133
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 51/128 (39%), Positives = 72/128 (56%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
S + +RPLSPHLQIYR + TM +SIVHRITG +Y GT ++V+W A S R
Sbjct: 4 SPQRIDRPLSPHLQIYRPLFTMVMSIVHRITGVGLYFGTAILVWWLLAAATSPSAFESFR 63
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + LF YTWA++HH LGG R+ IWD K +A+ + S+ +I
Sbjct: 64 SVAGSPIGLIVLFGYTWALLHHALGGARHFIWDFIHGFGPKERMLLAQATLAGSVALTVI 123
Query: 122 VWIIKDIV 129
+W++ V
Sbjct: 124 LWVVGLAV 131
>gi|121996856|ref|YP_001001643.1| succinate dehydrogenase, cytochrome b subunit [Halorhodospira
halophila SL1]
gi|121588261|gb|ABM60841.1| succinate dehydrogenase subunit C [Halorhodospira halophila SL1]
Length = 129
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 64/123 (52%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
NRPLSPHL IYR T +S++HR TG V + ++V W +A G L +
Sbjct: 3 NPNRPLSPHLTIYRPQLTSLLSVLHRGTGVFVTMAAVLLVAWVMALAAGPEYYELLTQVL 62
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ ++ L T+++ +H+ GIR+L+WD + K + + + AS+L +VW+
Sbjct: 63 GHWLGQLVLLGITFSLAYHLCNGIRHLVWDTVRAFELKAVYRGGYMVLAASVLLTALVWV 122
Query: 125 IKD 127
I
Sbjct: 123 IAY 125
>gi|149913137|ref|ZP_01901671.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter sp.
AzwK-3b]
gi|149813543|gb|EDM73369.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter sp.
AzwK-3b]
Length = 127
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 64/121 (52%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RPLSPHLQ+YR T SI+ RITG+ + +G ++V+W A G + +
Sbjct: 6 RGERPLSPHLQVYRPQMTSISSILTRITGNALIVGVLLIVWWLLAAATGPDYFAIADAVV 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
++ L L WA+ +H L G+R+L +D L+ + + ++ I S++ +I +
Sbjct: 66 TSWFGDLVLTLSLWAIWYHYLAGLRHLYYDAGKGLEIETSEKLGWACIGGSVILTVITLL 125
Query: 125 I 125
I
Sbjct: 126 I 126
>gi|83943849|ref|ZP_00956306.1| succinate dehydrogenase, cytochrome b556 subunit [Sulfitobacter sp.
EE-36]
gi|83845096|gb|EAP82976.1| succinate dehydrogenase, cytochrome b556 subunit [Sulfitobacter sp.
EE-36]
Length = 127
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 63/121 (52%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL IYR T SI+ RITG+ + + ++V+WF A ++
Sbjct: 6 RGNRPLSPHLTIYRPQLTSMTSILTRITGNAMLVAALLIVWWFLAAATSAEYFDIANGFI 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
++ +FL + +H L GIR+LIWD LD A ++ +I S++ +I +
Sbjct: 66 TSWFGDLVMFLSLLGLWYHTLAGIRHLIWDNGYALDIPTAEKLGWAALIGSVVLTIITAL 125
Query: 125 I 125
I
Sbjct: 126 I 126
>gi|90421600|ref|YP_529970.1| succinate dehydrogenase, cytochrome b subunit [Rhodopseudomonas
palustris BisB18]
gi|90103614|gb|ABD85651.1| succinate dehydrogenase subunit C [Rhodopseudomonas palustris
BisB18]
Length = 132
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 72/125 (57%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ + RPLSPH+Q YR TM +SIVHR+TG +Y GT ++ +W +A G ++++
Sbjct: 2 TARIERPLSPHMQAYRWSLTMALSIVHRLTGITLYFGTLLLAWWLIAVAAGPSAYANVQA 61
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + + LF YTW+++HHML G+R+ IWD+ M +I ++ +++
Sbjct: 62 FTGSWIGRLMLFGYTWSLMHHMLSGVRHFIWDLGYGFTAAERESMTWAALIGGVVLTVLL 121
Query: 123 WIIKD 127
WI+
Sbjct: 122 WIVAF 126
>gi|157825304|ref|YP_001493024.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia akari
str. Hartford]
gi|157799262|gb|ABV74516.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia akari
str. Hartford]
Length = 124
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP+SPHL IY+ + +SI+HRITG ++ ++V+W + L +
Sbjct: 6 QEIYNKRPISPHLTIYKPQISSTLSILHRITGVALFFAVSILVWWLILSKYDNNYLQFAK 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
C + ++CL +++ +H+ GIR+L WD+ K ++ S+L ++
Sbjct: 66 CC----IIKICLVAVSYSWFYHLCNGIRHLFWDIGYGFSIKAVNITGWCVVVGSLLLTML 121
Query: 122 VWI 124
+W+
Sbjct: 122 LWV 124
>gi|239947122|ref|ZP_04698875.1| succinate dehydrogenase, cytochrome b556 subunit [Rickettsia
endosymbiont of Ixodes scapularis]
gi|239921398|gb|EER21422.1| succinate dehydrogenase, cytochrome b556 subunit [Rickettsia
endosymbiont of Ixodes scapularis]
Length = 124
Score = 140 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP SPHL IY+ + +SI+HR+TG ++ ++ +W + L
Sbjct: 6 QEIYNKRPTSPHLTIYKPQISSTLSILHRMTGVALFFAVSILAWWLILSKYDNNYLQLAN 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
C + ++CL ++A +H+ GIR+L WD+ K ++ SIL ++
Sbjct: 66 CC----IIKICLVAASYAWFYHLCNGIRHLFWDIGYGFSIKAVNITGWCVVVCSILLTML 121
Query: 122 VWI 124
+W+
Sbjct: 122 LWV 124
>gi|298293274|ref|YP_003695213.1| succinate dehydrogenase, cytochrome b556 subunit [Starkeya novella
DSM 506]
gi|296929785|gb|ADH90594.1| succinate dehydrogenase, cytochrome b556 subunit [Starkeya novella
DSM 506]
Length = 130
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 51/123 (41%), Positives = 70/123 (56%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RPLSPHLQIYR + TM +SIVHRITG +Y GT ++V W A+ ++
Sbjct: 6 ERPLSPHLQIYRPMLTMMMSIVHRITGVALYFGTLLLVIWLVAAASSPAAFDTVNGLYGS 65
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
+ + L Y+WA+IHH LGGIR+ IWD + MA+ I SI +++WII
Sbjct: 66 WIGLLVLVGYSWALIHHALGGIRHFIWDTGAGFGPQAREWMARATIGGSIGLTVLLWIII 125
Query: 127 DIV 129
+V
Sbjct: 126 WLV 128
>gi|254465461|ref|ZP_05078872.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacterales
bacterium Y4I]
gi|206686369|gb|EDZ46851.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacterales
bacterium Y4I]
Length = 127
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 63/121 (52%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHLQ+YR T SI+ RITG+ + + ++ +WF A ++ +
Sbjct: 6 RGNRPLSPHLQVYRPQLTSVTSILTRITGNALIVSALLIAWWFLAAATSADYFATANGLL 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
++ + L + +H L GIR+LIWD L+ + A ++ +I S + ++ I
Sbjct: 66 TSWFGDLVMTLSVLGLWYHTLAGIRHLIWDNGYMLELEQAEKLGWGVVIGSAVLTVLTTI 125
Query: 125 I 125
I
Sbjct: 126 I 126
>gi|163738939|ref|ZP_02146352.1| succinate dehydrogenase, cytochrome b556 subunit [Phaeobacter
gallaeciensis BS107]
gi|163741817|ref|ZP_02149207.1| succinate dehydrogenase, cytochrome b556 subunit [Phaeobacter
gallaeciensis 2.10]
gi|161384990|gb|EDQ09369.1| succinate dehydrogenase, cytochrome b556 subunit [Phaeobacter
gallaeciensis 2.10]
gi|161387744|gb|EDQ12100.1| succinate dehydrogenase, cytochrome b556 subunit [Phaeobacter
gallaeciensis BS107]
Length = 127
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 64/121 (52%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHLQ+YR T SI+ RITG+ + + ++ +WF A E + M
Sbjct: 6 RGNRPLSPHLQVYRPQITSITSILTRITGNALIVSALLIAWWFLAAATSEDYFRTANAVM 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
++ + L + +H L G+R+LIWD LD + A ++ II S++ ++ +
Sbjct: 66 TSWFGDIVMSLSVLGLWYHTLAGVRHLIWDNGKMLDLEPAQKLGWFVIIGSVVLTVLTLV 125
Query: 125 I 125
I
Sbjct: 126 I 126
>gi|255261406|ref|ZP_05340748.1| succinate dehydrogenase, cytochrome b556 subunit [Thalassiobium sp.
R2A62]
gi|255103741|gb|EET46415.1| succinate dehydrogenase, cytochrome b556 subunit [Thalassiobium sp.
R2A62]
Length = 127
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 44/121 (36%), Positives = 69/121 (57%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL IYR T SI R+TG+ + + ++V+WF A G ++ ++
Sbjct: 6 RGNRPLSPHLTIYRPQMTSMTSIFVRLTGNALLIAALMIVWWFVAAATGPEAFATADGFL 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
++ F TWA+ +H+LGG+R+LIWD+ LD + A M II S+L ++ I
Sbjct: 66 RSWFGDLVFFASTWAIWYHLLGGLRHLIWDMGYGLDLQSAYNMGYAMIIGSLLLTVLTVI 125
Query: 125 I 125
+
Sbjct: 126 V 126
>gi|222150048|ref|YP_002551005.1| succinate dehydrogenase cytochrome B-556 subunit [Agrobacterium
vitis S4]
gi|221737030|gb|ACM37993.1| succinate dehydrogenase cytochrome B-556 subunit [Agrobacterium
vitis S4]
Length = 130
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 51/115 (44%), Positives = 76/115 (66%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ RPLSPHLQIY+L+PTM +SIVHRITG +Y GT +V +W + G +
Sbjct: 1 MANVTKQRPLSPHLQIYKLVPTMLMSIVHRITGGALYFGTALVAWWLIAASTGADYYDWV 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+M + ++ LF ++WA+IHHMLGG+R+ WD+ L+K T++AK +AS
Sbjct: 61 SWFMGTFIGKIILFGFSWALIHHMLGGMRHFAWDLGYGLEKHFNTKLAKATAVAS 115
>gi|218507957|ref|ZP_03505835.1| succinate dehydrogenase protein, cytochrome b subunit [Rhizobium
etli Brasil 5]
Length = 111
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 50/110 (45%), Positives = 78/110 (70%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ NNRPLSPHLQ+Y+LIPTM +SIVHRITG +Y+GT +V +W A+G+ +
Sbjct: 1 MANVTNNRPLSPHLQVYKLIPTMVMSIVHRITGGALYVGTLLVAWWLIAAASGQASYDWA 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKI 110
+ + ++ L YTWA++HHMLGG R+L+WD+ +K+++T++A
Sbjct: 61 NWVLGSLLGKLVLLGYTWALLHHMLGGFRHLMWDLGYGFEKEVSTKLAIA 110
>gi|126725053|ref|ZP_01740896.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacterales
bacterium HTCC2150]
gi|126706217|gb|EBA05307.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacterales
bacterium HTCC2150]
Length = 139
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 58/121 (47%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RPLSPHL IYR T SI RITG+ + L ++V+W A G R +
Sbjct: 18 RGKRPLSPHLTIYRPQLTSMTSIFTRITGNAMLLAALMIVWWLLAAATGPGYYDLARTVI 77
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ + L WA+ +H G+R+L WD + K A ++ + I S + ++ I
Sbjct: 78 TSWFGSLIMILSLWALWYHFCAGLRHLYWDTGRGFEIKQAERLGIMVIAGSFILTVLTLI 137
Query: 125 I 125
+
Sbjct: 138 L 138
>gi|77464554|ref|YP_354058.1| succinate dehydrogenase subunit C [Rhodobacter sphaeroides 2.4.1]
gi|126463394|ref|YP_001044508.1| succinate dehydrogenase, cytochrome b subunit [Rhodobacter
sphaeroides ATCC 17029]
gi|221640465|ref|YP_002526727.1| Succinate dehydrogenase subunit C [Rhodobacter sphaeroides KD131]
gi|77388972|gb|ABA80157.1| succinate dehydrogenase subunit C [Rhodobacter sphaeroides 2.4.1]
gi|126105058|gb|ABN77736.1| succinate dehydrogenase subunit C [Rhodobacter sphaeroides ATCC
17029]
gi|221161246|gb|ACM02226.1| Succinate dehydrogenase subunit C [Rhodobacter sphaeroides KD131]
Length = 127
Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 1/126 (0%)
Query: 1 MSSIKN-NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
M+ K RPLSPHLQIYR+ T SI R+TG+ + +GT +V +W A +
Sbjct: 1 MAETKRVERPLSPHLQIYRVQLTSTTSIFTRLTGNGLIVGTMLVTWWLLAAALSPEQFET 60
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ ++ L L WA+ +H L G+R+L WD L+ K A ++ I S++
Sbjct: 61 ADWVLTSWFGDIVLLLSVWALWYHYLAGLRHLYWDTGKGLEIKTAEKLGMACIGGSLVLT 120
Query: 120 LIVWII 125
L+ II
Sbjct: 121 LLTVII 126
>gi|332559447|ref|ZP_08413769.1| succinate dehydrogenase cytochrome b556 subunit [Rhodobacter
sphaeroides WS8N]
gi|332277159|gb|EGJ22474.1| succinate dehydrogenase cytochrome b556 subunit [Rhodobacter
sphaeroides WS8N]
Length = 127
Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 1/126 (0%)
Query: 1 MSSIKN-NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
M+ K RPLSPHLQIYR+ T SI R+TG+ + +GT +V +W A +
Sbjct: 1 MAETKRVERPLSPHLQIYRVQLTSTTSIFTRLTGNGLIVGTMLVTWWLLAAALSPEQFET 60
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ ++ L L WA+ +H L G+R+L WD L+ K A ++ I S++
Sbjct: 61 ADWVLTSWFGDIVLLLSVWALWYHYLAGLRHLYWDTGKGLEIKTAEKLGMACIGGSLVPT 120
Query: 120 LIVWII 125
L+ II
Sbjct: 121 LLTVII 126
>gi|188583472|ref|YP_001926917.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
populi BJ001]
gi|179346970|gb|ACB82382.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
populi BJ001]
Length = 133
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 48/121 (39%), Positives = 71/121 (58%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSV 68
PLSPHLQIYR TM +S+ HRITG+ +Y GT +V W +A+G ++ + +
Sbjct: 12 PLSPHLQIYRWTWTMAMSVFHRITGTALYGGTFLVAVWLVALASGPRAYDTVAWFFGSLI 71
Query: 69 FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDI 128
LF YTW ++HHMLGGIR+ IWD D+ +A+ +I S+ +++W I +
Sbjct: 72 GRAILFAYTWVLMHHMLGGIRHFIWDAGYGFDRDRRLGLARATLIGSVTLTIVIWAIALL 131
Query: 129 V 129
V
Sbjct: 132 V 132
>gi|197103676|ref|YP_002129053.1| succinate dehydrogenase cytochrome b-556 subunit [Phenylobacterium
zucineum HLK1]
gi|196477096|gb|ACG76624.1| succinate dehydrogenase cytochrome b-556 subunit [Phenylobacterium
zucineum HLK1]
Length = 129
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 63/126 (50%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RP SPH I+R TM SI+HRITG +Y G + W +A G T ++ +
Sbjct: 1 MVRERPTSPHTTIWRWHLTMATSILHRITGVALYGGALIAAAWALSLAGGPETYAAFKGV 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
M + ++ LF T A +H+ G+R+L WD+ D K A A I ++ L VW
Sbjct: 61 MGSFLGKLALFGLTLAGFYHLGNGVRHLTWDLGHGFDLKSANASAVGVIAFAVAATLAVW 120
Query: 124 IIKDIV 129
+I +
Sbjct: 121 VIAGMT 126
>gi|110678932|ref|YP_681939.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter
denitrificans OCh 114]
gi|109455048|gb|ABG31253.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter
denitrificans OCh 114]
Length = 127
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 64/121 (52%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL IYR T SI+ RITG+ + + + +VV+WF A + +
Sbjct: 6 RGNRPLSPHLTIYRPQLTSMTSILTRITGNALLISSLLVVWWFLAAATSPEYFAVANGVL 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
++ + L W + +H L G+R+LIWD + LD + A ++ I S + L+ I
Sbjct: 66 TSWFGDLVMTLSLWGLWYHTLAGVRHLIWDQGIGLDIETAYKLGYAVIGGSFVLTLLTII 125
Query: 125 I 125
+
Sbjct: 126 L 126
>gi|157964193|ref|YP_001499017.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
massiliae MTU5]
gi|157843969|gb|ABV84470.1| Succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
massiliae MTU5]
Length = 124
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP SPHL IY+ + +SI+HR+TG ++ ++V+W + L
Sbjct: 6 QEIYNKRPTSPHLTIYKPQISSTLSILHRMTGVALFFVVSILVWWLILSKYDNNYLQLAE 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
C + ++CL ++A +H+ GIR+L WD+ K+ ++ S+L ++
Sbjct: 66 CC----IIKICLVAVSYAWFYHLCNGIRHLFWDIGYGFSIKLVNITGWCVVVGSVLLTVL 121
Query: 122 VWI 124
+W+
Sbjct: 122 LWV 124
>gi|91974961|ref|YP_567620.1| succinate dehydrogenase, cytochrome b subunit [Rhodopseudomonas
palustris BisB5]
gi|91681417|gb|ABE37719.1| succinate dehydrogenase subunit C [Rhodopseudomonas palustris
BisB5]
Length = 129
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 69/121 (57%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
+RPLSPH+Q YR TM +SIVHR TG +Y GT ++ +W A G + ++L+ +
Sbjct: 3 DRPLSPHMQAYRWSLTMALSIVHRATGIALYFGTLLLAWWLIACAAGPASYANLQAFTGS 62
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
+ + LF YTW+++HH+L G+R+ +WD+ + +I ++ ++ W+I
Sbjct: 63 WIGRLILFGYTWSLMHHLLSGVRHFVWDLGYGFKTADREWLTWAALIGGVVLTVLFWVIA 122
Query: 127 D 127
Sbjct: 123 F 123
>gi|51473326|ref|YP_067083.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia typhi
str. Wilmington]
gi|81390260|sp|Q68XP1|DHSC_RICTY RecName: Full=Succinate dehydrogenase cytochrome b556 subunit;
Short=Cytochrome b-556
gi|51459638|gb|AAU03601.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia typhi
str. Wilmington]
Length = 124
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP SPHL IY+ + +SI+HR+TG ++ ++V+W + L R
Sbjct: 6 QEIYNKRPTSPHLTIYKPQISSTLSILHRMTGVALFFVVSILVWWLILSKYDNNYLQLAR 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
C + ++CL +++A +H+ GIR+L WD+ + ++ SIL ++
Sbjct: 66 CC----IIKICLVAFSYAWCYHLCNGIRHLFWDIGYGFSIRAVNITGWCVVVCSILLTML 121
Query: 122 VWI 124
+W+
Sbjct: 122 LWV 124
>gi|23011496|ref|ZP_00051838.1| COG2009: Succinate dehydrogenase/fumarate reductase, cytochrome b
subunit [Magnetospirillum magnetotacticum MS-1]
Length = 134
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 46/121 (38%), Positives = 73/121 (60%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSV 68
PLSPHLQIYR TM +S+ HRITG+ +Y GT +V W +A+G ++ + +
Sbjct: 12 PLSPHLQIYRWTWTMAMSVFHRITGTALYGGTFLVAVWLVALASGPRAYDAVAWFFGSWI 71
Query: 69 FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDI 128
+ LF YTW ++HHMLGGIR+ IWD D+ +A+ +I S++ +++W + +
Sbjct: 72 GRLILFAYTWVLMHHMLGGIRHFIWDAGYGFDRDRRLGLARATLIGSVVLTVVIWALALL 131
Query: 129 V 129
+
Sbjct: 132 L 132
>gi|300024743|ref|YP_003757354.1| succinate dehydrogenase, cytochrome b556 subunit [Hyphomicrobium
denitrificans ATCC 51888]
gi|299526564|gb|ADJ25033.1| succinate dehydrogenase, cytochrome b556 subunit [Hyphomicrobium
denitrificans ATCC 51888]
Length = 137
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 43/120 (35%), Positives = 68/120 (56%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RPLSPHLQIY + M +SIVHRITG +Y+G+ ++ W A+G + +
Sbjct: 10 RPERPLSPHLQIYSPLINMMMSIVHRITGVALYVGSLLLAVWLLAAASGPDYYDYVAGLL 69
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
++ L YTWA++HH+LGG+R+ IWD D K ++ + S++ ++WI
Sbjct: 70 GSWPGKIVLLGYTWALMHHLLGGLRHFIWDTGRGYDLKTVDLLSWGTLAGSLVLTALIWI 129
>gi|67459555|ref|YP_247179.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia felis
URRWXCal2]
gi|75536045|sp|Q4UKC1|DHSC_RICFE RecName: Full=Succinate dehydrogenase cytochrome b556 subunit;
Short=Cytochrome b-556
gi|67005088|gb|AAY62014.1| Succinate dehydrogenase cytochrome b-556 subunit [Rickettsia felis
URRWXCal2]
Length = 124
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP SPHL IY+L + +SI+HR+TG ++ ++ +W + L
Sbjct: 6 QEIYNKRPTSPHLSIYKLQISSTLSILHRMTGVALFFAVSILAWWLILSKYDNNYLQFAN 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
C + ++CL ++A +H+ GIR+L WD+ K ++ SIL ++
Sbjct: 66 CC----IIKICLVAVSYAWFYHLCNGIRHLFWDIGYGFSIKAVNITGWCVVVCSILLTML 121
Query: 122 VWI 124
+W+
Sbjct: 122 LWV 124
>gi|163853006|ref|YP_001641049.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
extorquens PA1]
gi|218531816|ref|YP_002422632.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
chloromethanicum CM4]
gi|254562942|ref|YP_003070037.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
extorquens DM4]
gi|163664611|gb|ABY31978.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
extorquens PA1]
gi|218524119|gb|ACK84704.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
chloromethanicum CM4]
gi|254270220|emb|CAX26214.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
extorquens DM4]
Length = 133
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 47/121 (38%), Positives = 70/121 (57%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSV 68
PLSPHLQIYR TM +S+ HRITG+ +Y GT +V W +A+G ++ +
Sbjct: 12 PLSPHLQIYRWTWTMAMSVFHRITGTALYGGTFLVAVWLVALASGPRAYDTVAWFFGSWA 71
Query: 69 FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDI 128
LF YTW ++HHMLGG+R+ IWD D+ +A+ +I S+ +++W I +
Sbjct: 72 GRAILFAYTWVLLHHMLGGLRHFIWDAGYGFDRDRRLGLARATLIGSVTLTIVIWAIALL 131
Query: 129 V 129
V
Sbjct: 132 V 132
>gi|170746891|ref|YP_001753151.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
radiotolerans JCM 2831]
gi|170653413|gb|ACB22468.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
radiotolerans JCM 2831]
Length = 133
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 50/121 (41%), Positives = 75/121 (61%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSV 68
P+SPHLQIYR TM +S+ HRITG+ +Y GT +V W +A+G S + +
Sbjct: 12 PMSPHLQIYRWTWTMAMSVFHRITGTALYGGTALVAIWLVALASGPVGYSYVAGFFGSIF 71
Query: 69 FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDI 128
+ LF+YTW ++HHMLGGIR+LIWD + D+ MA++ +I S+ L++W + +
Sbjct: 72 GRLILFVYTWILMHHMLGGIRHLIWDTGVGFDRDKRLSMARLTLIGSVALTLVIWAVALL 131
Query: 129 V 129
V
Sbjct: 132 V 132
>gi|146276143|ref|YP_001166302.1| succinate dehydrogenase, cytochrome b subunit [Rhodobacter
sphaeroides ATCC 17025]
gi|145554384|gb|ABP68997.1| succinate dehydrogenase subunit C [Rhodobacter sphaeroides ATCC
17025]
Length = 127
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 1 MSSIKN-NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
M+ K RPLSPHLQIYR+ T SI RITG+ + +GT +V +W A G ++
Sbjct: 1 MAETKRVERPLSPHLQIYRVQLTSTTSIFTRITGNGLIVGTMLVTWWLLAAALGPEQFAT 60
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ ++ L L WA+ +H L G+R+L WD L+ A ++ I S
Sbjct: 61 ADAVLTSWFGDIVLLLSVWALWYHYLAGLRHLYWDTGKGLEITTAEKLGWACIGGS 116
>gi|15604003|ref|NP_220518.1| succinate dehydrogenase cytochrome B560 subunit (sdhC) [Rickettsia
prowazekii str. Madrid E]
gi|729336|sp|P41085|DHSC_RICPR RecName: Full=Succinate dehydrogenase cytochrome b556 subunit;
Short=Cytochrome b-556
gi|409934|gb|AAA18325.1| putative hydrophobic subunit of succinate dehydrogenase [Rickettsia
prowazekii]
gi|3860694|emb|CAA14595.1| SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT (sdhC) [Rickettsia
prowazekii]
gi|292571719|gb|ADE29634.1| Succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
prowazekii Rp22]
Length = 124
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP SPHL IY+ + +SI+HR+TG ++ ++V+W + L
Sbjct: 6 QEIYNKRPTSPHLTIYKPQISSTLSILHRMTGVALFFVVSILVWWLILSKYDNNYLQLAS 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
C + ++CL ++++ +H+ GIR+L WD+ K ++ SIL ++
Sbjct: 66 CC----IIKICLVAFSYSWCYHLCNGIRHLFWDIGYGFSIKAVNITGWCVVVCSILLTML 121
Query: 122 VWI 124
+W+
Sbjct: 122 LWV 124
>gi|163734150|ref|ZP_02141591.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter
litoralis Och 149]
gi|161392686|gb|EDQ17014.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter
litoralis Och 149]
Length = 127
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 66/121 (54%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL+IYR T SI+ RITG+ + + + +VV+WF A + + +
Sbjct: 6 RGNRPLSPHLRIYRPQLTSITSILTRITGNALLISSLLVVWWFLAAATSPESFAVANGVL 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+V + L W + +H L G+R+LIWD + LD + A +M I S + L+ I
Sbjct: 66 TSWFGDVVMTLSLWGLWYHTLAGVRHLIWDQGIGLDIETAYKMGYAVIGGSFVLTLLTII 125
Query: 125 I 125
+
Sbjct: 126 L 126
>gi|83953490|ref|ZP_00962212.1| succinate dehydrogenase, cytochrome b556 subunit [Sulfitobacter sp.
NAS-14.1]
gi|83842458|gb|EAP81626.1| succinate dehydrogenase, cytochrome b556 subunit [Sulfitobacter sp.
NAS-14.1]
Length = 127
Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 58/112 (51%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL IYR T SI+ RITG+ + + ++V+WF A ++
Sbjct: 6 RGNRPLSPHLTIYRPQLTSMTSILTRITGNAMLVAALLIVWWFLAAATSAEYFDIANGFI 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
++ +FL + +H L GIR+LIWD LD A ++ +I S+
Sbjct: 66 TSWFGDLVMFLSLLGLWYHTLAGIRHLIWDNGYALDIPTAEKLGWAALIGSV 117
>gi|240140347|ref|YP_002964826.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
extorquens AM1]
gi|27902656|gb|AAO24619.1| succinate dehydrogenase gamma subunit [Methylobacterium extorquens]
gi|240010323|gb|ACS41549.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
extorquens AM1]
Length = 133
Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 47/121 (38%), Positives = 70/121 (57%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSV 68
PLSPHLQIYR TM +S+ HR+TG+ +Y GT +V W +A+G ++ +
Sbjct: 12 PLSPHLQIYRWTWTMAMSVFHRVTGTALYGGTFLVAVWLVALASGPRAYDTVAWFFGSWA 71
Query: 69 FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDI 128
LF YTW ++HHMLGG+R+ IWD D+ +A+ +I SI +++W I +
Sbjct: 72 GRAILFAYTWVLLHHMLGGLRHFIWDAGYGFDRDRRLGLARATLIGSITLTIVIWAIALL 131
Query: 129 V 129
V
Sbjct: 132 V 132
>gi|158425367|ref|YP_001526659.1| succinate dehydrogenase cytochrome b-556 subunit [Azorhizobium
caulinodans ORS 571]
gi|158332256|dbj|BAF89741.1| succinate dehydrogenase cytochrome b-556 subunit [Azorhizobium
caulinodans ORS 571]
Length = 133
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 51/119 (42%), Positives = 71/119 (59%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHLQIYR +PTM +SIVHR TG +Y GT ++++W A+
Sbjct: 10 RPLSPHLQIYRPLPTMVMSIVHRATGIALYFGTVLLIWWLLAAASTPSAYGLFTSIAGSW 69
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
+ + LF YTWA+IHH LGGIR+LIWD + +AK+ ++ S+ +IVW+I
Sbjct: 70 IGRLVLFGYTWALIHHALGGIRHLIWDTIRGFGAQERVLLAKLTLVGSVTLTIIVWVIG 128
>gi|163796399|ref|ZP_02190359.1| succinate dehydrogenase, cytochrome b subunit [alpha
proteobacterium BAL199]
gi|159178249|gb|EDP62793.1| succinate dehydrogenase, cytochrome b subunit [alpha
proteobacterium BAL199]
Length = 128
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 64/122 (52%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RPLSPHLQIY+ T +SI HR TG + G ++ +W A G + + ++ ++
Sbjct: 5 RRPLSPHLQIYKPQLTSVLSISHRATGVGLAAGLLLLTWWLLAAAAGPDSFAVVQDFLGS 64
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
+ + LF +++A++ H+ G+R+L WD + + +IAS+ ++ W I
Sbjct: 65 WLGYLILFGFSYALMFHLCNGVRHLFWDAGWGFELDTVYKSGWAVVIASVALTVLAWAIA 124
Query: 127 DI 128
+
Sbjct: 125 IV 126
>gi|88812336|ref|ZP_01127586.1| Succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Nitrococcus mobilis Nb-231]
gi|88790343|gb|EAR21460.1| Succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Nitrococcus mobilis Nb-231]
Length = 126
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 70/120 (58%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
+RPLSPHLQIYR T+ SI HRITG+++ LGT V +W +A+G ++ R +
Sbjct: 5 DRPLSPHLQIYRFPTTVITSITHRITGALLALGTLGVTYWLIALASGPQVYAAARAFFGN 64
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
++ LF +T+A+ +H+ GIR+L W + + + A + A +A+ + +I W+
Sbjct: 65 GFVQLILFFWTYALFYHLCNGIRHLGWAIDYGFELERARKSAVAVFVAAGILTVITWLFA 124
>gi|56695273|ref|YP_165621.1| succinate dehydrogenase, cytochrome b556 subunit [Ruegeria pomeroyi
DSS-3]
gi|56677010|gb|AAV93676.1| succinate dehydrogenase, cytochrome b556 subunit [Ruegeria pomeroyi
DSS-3]
Length = 128
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 65/121 (53%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL IYR T SI+ RITG+ + ++V+WF A + +
Sbjct: 6 RGNRPLSPHLSIYRPQLTSITSILTRITGNALLFAALLIVWWFLAAATSPEYFAVADGVI 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ ++ + L W + +H L GIR+LIWD +L LD A ++ +I S+L ++ +
Sbjct: 66 TSLIGDLVMALSLWGLWYHTLAGIRHLIWDNALGLDLPTAEKLGWAVVIGSVLLTILTLV 125
Query: 125 I 125
+
Sbjct: 126 V 126
>gi|15892091|ref|NP_359805.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
conorii str. Malish 7]
gi|229586366|ref|YP_002844867.1| Succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
africae ESF-5]
gi|21362479|sp|Q92J99|DHSC_RICCN RecName: Full=Succinate dehydrogenase cytochrome b556 subunit;
Short=Cytochrome b-556
gi|15619214|gb|AAL02706.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
conorii str. Malish 7]
gi|228021416|gb|ACP53124.1| Succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
africae ESF-5]
Length = 124
Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP SPHL IY+ + +SI++R+TG ++ ++V+W + L
Sbjct: 6 QEIYNKRPTSPHLTIYKPQISSTLSILYRMTGVALFFAVSILVWWLILSKYDNNYLQLAE 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
C + ++CL ++A +H+ GIR+L WD+ K+ ++ S+L ++
Sbjct: 66 CC----IIKICLVAVSYAWFYHLCNGIRHLFWDIGYGFSIKLVNITGWCVVVGSVLLTVL 121
Query: 122 VWI 124
+W+
Sbjct: 122 LWV 124
>gi|34580878|ref|ZP_00142358.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
sibirica 246]
gi|28262263|gb|EAA25767.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
sibirica 246]
Length = 124
Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP SPHL IY+ + +SI++R+TG ++ ++V+W + L
Sbjct: 6 QEIYNKRPTSPHLTIYKPQISSTLSILYRMTGVALFFAVSILVWWLILSQYDNNYLQLAE 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
C + ++CL ++A +H+ GIR+L WD+ K+ ++ S+L ++
Sbjct: 66 CC----IIKICLVAVSYAWFYHLCNGIRHLFWDIGYGFSIKLVNITGWCVVVGSVLLTVL 121
Query: 122 VWI 124
+W+
Sbjct: 122 LWV 124
>gi|260431521|ref|ZP_05785492.1| succinate dehydrogenase, cytochrome b556 subunit [Silicibacter
lacuscaerulensis ITI-1157]
gi|260415349|gb|EEX08608.1| succinate dehydrogenase, cytochrome b556 subunit [Silicibacter
lacuscaerulensis ITI-1157]
Length = 128
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 67/121 (55%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL IYR T SI+ RITG+ + + ++V+WF A ++ +
Sbjct: 6 RGNRPLSPHLSIYRPQLTSVTSILTRITGNAMLVAALLIVWWFLAAATSPEAYATANAVI 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ ++ + L W + +H L GIR+LIWD ++ LD A ++ +I S++ L+ +
Sbjct: 66 TSLLGDLVMALSLWGLWYHTLAGIRHLIWDSAVGLDLPTAYKLGWAVVIGSVVLTLVTLL 125
Query: 125 I 125
I
Sbjct: 126 I 126
>gi|220926986|ref|YP_002502288.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
nodulans ORS 2060]
gi|219951593|gb|ACL61985.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
nodulans ORS 2060]
Length = 133
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 46/121 (38%), Positives = 73/121 (60%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHLQIYR TM +S+ HR+TG +Y GT +V W +A+G+ +
Sbjct: 11 RPLSPHLQIYRWTWTMAMSVAHRLTGIALYGGTALVAIWLVALASGKAAYDPVAWLYGSI 70
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKD 127
+ + +F+YTW ++HHMLGGIR+L+WD ++ MAK ++ S++ L++W +
Sbjct: 71 LGRLVIFVYTWILMHHMLGGIRHLVWDFGYGMEPGTRIAMAKYTLVGSVVLTLVIWAVAL 130
Query: 128 I 128
+
Sbjct: 131 L 131
>gi|254437963|ref|ZP_05051457.1| succinate dehydrogenase, cytochrome b556 subunit [Octadecabacter
antarcticus 307]
gi|198253409|gb|EDY77723.1| succinate dehydrogenase, cytochrome b556 subunit [Octadecabacter
antarcticus 307]
Length = 127
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 68/121 (56%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
++ RPLSPHL IYR T SI R+TG+ + +G ++V+WF +A+G + +M
Sbjct: 6 RDKRPLSPHLTIYRPQWTSMTSIFTRLTGNALIVGALLIVWWFAALASGPEAYARANGFM 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
++ +F A+ +H L G+R+LIWD LD + + + ++ I+ S+L + I
Sbjct: 66 TSWFGDLIMFGSVAALWYHSLAGVRHLIWDSGHMLDVQSSERAGQLIILVSVLLTIFTVI 125
Query: 125 I 125
+
Sbjct: 126 V 126
>gi|288957014|ref|YP_003447355.1| succinate dehydrogenase cytochrome b-556 subunit [Azospirillum sp.
B510]
gi|288909322|dbj|BAI70811.1| succinate dehydrogenase cytochrome b-556 subunit [Azospirillum sp.
B510]
Length = 142
Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 70/124 (56%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+ RPLSPHLQ+Y+L T +SI HRITG + +GT ++V+W A G + + ++
Sbjct: 18 SGRPLSPHLQVYKLPLTAVMSITHRITGVGLAVGTLLLVWWLVAAAAGPEAFARAQGFIG 77
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ +F ++ A+ +H+ GIR+L+WD + A + +I +IA+ ++ WI+
Sbjct: 78 SFFGLLLMFGWSAALYYHLCNGIRHLVWDAGKSFELTDADRNNRIVLIATAALTVLTWIV 137
Query: 126 KDIV 129
V
Sbjct: 138 GLAV 141
>gi|163869248|ref|YP_001610504.1| SdhC succinate dehydrogenase cytochrome b-556 subunit [Bartonella
tribocorum CIP 105476]
gi|161018951|emb|CAK02509.1| SdhC succinate dehydrogenase cytochrome b-556 subunit [Bartonella
tribocorum CIP 105476]
Length = 133
Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 51/125 (40%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RP SPH+ IYR TM +SI HRITG +Y+GT W IA GE T ++
Sbjct: 8 KERPRSPHISIYRWTITMAMSIAHRITGMALYVGTVFFAVWLIAIACGEETFRTVHEIYS 67
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLC-LDKKIATQMAKINIIASILTVLIVWI 124
LFLYT A +HHM+GG+R+++WD+ C L K+ AT A + S++ +WI
Sbjct: 68 SWFGLCILFLYTLAGVHHMVGGVRHIVWDLKPCLLAKEKATATAWATVFISLIVTFAIWI 127
Query: 125 IKDIV 129
I V
Sbjct: 128 IGYTV 132
>gi|157828041|ref|YP_001494283.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
rickettsii str. 'Sheila Smith']
gi|165932739|ref|YP_001649528.1| succinate dehydrogenase cytochrome b556 subunit [Rickettsia
rickettsii str. Iowa]
gi|157800522|gb|ABV75775.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
rickettsii str. 'Sheila Smith']
gi|165907826|gb|ABY72122.1| succinate dehydrogenase cytochrome b556 subunit [Rickettsia
rickettsii str. Iowa]
Length = 124
Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP SPHL IY+ + +SI++R+TG ++ ++V+W + L
Sbjct: 6 QEIYNKRPTSPHLTIYKPQISSTLSILYRMTGVALFFAVSILVWWLILSKYDNNYLQLAE 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
C + ++CL ++A +H+ GIR+L WD+ K+ ++ S+L ++
Sbjct: 66 CC----IIKICLVAVSYAWFYHLCNGIRHLFWDIGYGFSIKLVNITGWCVVLGSVLLTVL 121
Query: 122 VWI 124
+W+
Sbjct: 122 LWV 124
>gi|85706758|ref|ZP_01037850.1| Succinate dehydrogenase cytochrome b-556 subunit [Roseovarius sp.
217]
gi|85668816|gb|EAQ23685.1| Succinate dehydrogenase cytochrome b-556 subunit [Roseovarius sp.
217]
Length = 127
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Query: 1 MSSIKN-NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
M+ K RPLSPHLQIYR T SI+ RITG+ + + ++V+W + ++ +
Sbjct: 1 MAETKQVERPLSPHLQIYRPQLTSITSILTRITGNALVVAAALIVWWLLAASTSDNYFAM 60
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ ++ L L WAV +H L G+R+L +D +D A ++ II S++
Sbjct: 61 ADAVLTSWFGDLVLTLSLWAVWYHYLAGLRHLYFDAGKGMDIPTAEKLGWACIIGSVVLS 120
Query: 120 LIVWII 125
+I ++
Sbjct: 121 VITLLL 126
>gi|170729589|ref|YP_001775022.1| succinate dehydrogenase membrane anchor subunit [Xylella fastidiosa
M12]
gi|167964382|gb|ACA11392.1| succinate dehydrogenase membrane anchor subunit [Xylella fastidiosa
M12]
Length = 151
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 58/124 (46%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+SS RPLSPHLQIYR M SI+HR TG + LG V+ + G
Sbjct: 19 LSSPPRERPLSPHLQIYRWQMQMVTSILHRATGVFLSLGVLVIAAGLLALMFGAEPWDYF 78
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
R ++ + L ++TW +H+ GIR++ D + + +++ SI+
Sbjct: 79 RSCLNLWYGQCFLLVWTWCFGYHLCNGIRHIAQDFGCGFAISSFLRSSWASVLGSIVITA 138
Query: 121 IVWI 124
VW+
Sbjct: 139 GVWV 142
>gi|149201370|ref|ZP_01878345.1| Succinate dehydrogenase cytochrome b-556 subunit [Roseovarius sp.
TM1035]
gi|149145703|gb|EDM33729.1| Succinate dehydrogenase cytochrome b-556 subunit [Roseovarius sp.
TM1035]
Length = 127
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 1/126 (0%)
Query: 1 MSSIKN-NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
M+ K RPLSPHLQIYR T SI+ RITG+ + + ++V+W + + +
Sbjct: 1 MAETKPVERPLSPHLQIYRPQLTSITSILTRITGNALIVAALLIVWWLLAASTSDAYFAM 60
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ ++ L L WAV +H L G+R+L +D +D A ++ II S++
Sbjct: 61 ADAVLTSWFGDLVLSLSAWAVWYHYLAGLRHLYFDAGKGMDIPTAEKLGWGCIIGSVVLT 120
Query: 120 LIVWII 125
+I ++
Sbjct: 121 VITLLL 126
>gi|163744267|ref|ZP_02151627.1| succinate dehydrogenase, cytochrome b556 subunit [Oceanibulbus
indolifex HEL-45]
gi|161381085|gb|EDQ05494.1| succinate dehydrogenase, cytochrome b556 subunit [Oceanibulbus
indolifex HEL-45]
Length = 127
Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 62/121 (51%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPH+ IYR T SI+ RITG+ + + ++V+WF A ++ M
Sbjct: 6 RGNRPLSPHMTIYRPQLTSMTSILTRITGNAMLITALLIVWWFLAAATSVEYFDTVNGIM 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
++ L + +H L GIR+LIWD LD A ++ +I S++ ++ I
Sbjct: 66 TSWFGDLVFTLSLLGLWYHTLAGIRHLIWDTGRMLDVPTAEKLGIAALIGSVVLTVLTVI 125
Query: 125 I 125
I
Sbjct: 126 I 126
>gi|89053302|ref|YP_508753.1| succinate dehydrogenase subunit C [Jannaschia sp. CCS1]
gi|88862851|gb|ABD53728.1| succinate dehydrogenase subunit C [Jannaschia sp. CCS1]
Length = 127
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 66/120 (55%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL IY+ SI+ RITG+ + + +VV+W A+G +++ ++
Sbjct: 6 RGNRPLSPHLTIYKPQLNSITSILVRITGNAMLVSAVLVVWWLMAAASGPEYFATVDGWV 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ ++ + L + +H LGG+R+LIWD LD + +M +I S++ ++ I
Sbjct: 66 TSVLGDIVMSLSVLGLWYHALGGLRHLIWDAGYGLDADTSDKMGWGMLIGSVVLTVLTLI 125
>gi|114769286|ref|ZP_01446912.1| succinate dehydrogenase, cytochrome b556 subunit [alpha
proteobacterium HTCC2255]
gi|114550203|gb|EAU53084.1| succinate dehydrogenase, cytochrome b556 subunit [alpha
proteobacterium HTCC2255]
Length = 131
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 63/121 (52%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+K NRPLSPHL IYR + SI+ RITG + LG +++ W + + +
Sbjct: 3 KRVKGNRPLSPHLTIYRPQMSSISSILVRITGVSLALGFILIITWLLAASTNVYYFDCIN 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + L WA+ +H LGGIR+LIWD+ D KIA ++ + II S + +
Sbjct: 63 SILTSWFGIIVLIGSVWALCYHSLGGIRHLIWDMGFGFDLKIADRLGWMVIIGSFVLTIF 122
Query: 122 V 122
V
Sbjct: 123 V 123
>gi|258541135|ref|YP_003186568.1| succinate dehydrogenase cytochrome b subunit [Acetobacter
pasteurianus IFO 3283-01]
gi|256632213|dbj|BAH98188.1| succinate dehydrogenase cytochrome b subunit [Acetobacter
pasteurianus IFO 3283-01]
gi|256635270|dbj|BAI01239.1| succinate dehydrogenase cytochrome b subunit [Acetobacter
pasteurianus IFO 3283-03]
gi|256638325|dbj|BAI04287.1| succinate dehydrogenase cytochrome b subunit [Acetobacter
pasteurianus IFO 3283-07]
gi|256641379|dbj|BAI07334.1| succinate dehydrogenase cytochrome b subunit [Acetobacter
pasteurianus IFO 3283-22]
gi|256644434|dbj|BAI10382.1| succinate dehydrogenase cytochrome b subunit [Acetobacter
pasteurianus IFO 3283-26]
gi|256647489|dbj|BAI13430.1| succinate dehydrogenase cytochrome b subunit [Acetobacter
pasteurianus IFO 3283-32]
gi|256650542|dbj|BAI16476.1| succinate dehydrogenase cytochrome b subunit [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256653533|dbj|BAI19460.1| succinate dehydrogenase cytochrome b subunit [Acetobacter
pasteurianus IFO 3283-12]
Length = 157
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RP+SPHLQ+YR +M +SI++RITG + G + VFW A G ++ R
Sbjct: 20 QRPMSPHLQVYRYRLSMVLSIMNRITGVIATAGATLGVFWLGAAAKGPKAFATARKVTGN 79
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINII--ASILTVLIVWI 124
+ ++ L + +VI+H +GGIR+LIWD DKK + + + A + TVL +
Sbjct: 80 PLGQLVLLGWLASVIYHTVGGIRHLIWDSGYRYDKKEVNKDGPVAVGVTAGVSTVLAAGL 139
Query: 125 IK 126
+
Sbjct: 140 LA 141
>gi|240851320|ref|YP_002972723.1| succinate dehydrogenase cytochrome b560 subunit [Bartonella
grahamii as4aup]
gi|240268443|gb|ACS52031.1| succinate dehydrogenase cytochrome b560 subunit [Bartonella
grahamii as4aup]
Length = 133
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 50/125 (40%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RP SPH+ IYR TM +SI HR+TG +Y+G + W IA GE T ++
Sbjct: 8 KERPRSPHISIYRWTITMAMSIAHRVTGMALYVGMVFLAVWLIAIACGEETFRTVHEIYS 67
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLC-LDKKIATQMAKINIIASILTVLIVWI 124
LFLYT A +HHM+GGIR+++WD+ C L K+ AT A + S++ ++WI
Sbjct: 68 SWFGLCILFLYTLAGVHHMVGGIRHIVWDMMPCLLAKEKATVTAWATVFISLIVTFVIWI 127
Query: 125 IKDIV 129
I V
Sbjct: 128 IGYSV 132
>gi|329114746|ref|ZP_08243503.1| Succinate dehydrogenase cytochrome b556 subunit [Acetobacter
pomorum DM001]
gi|326695877|gb|EGE47561.1| Succinate dehydrogenase cytochrome b556 subunit [Acetobacter
pomorum DM001]
Length = 157
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RP+SPHLQ+YR +M +SI++RITG + G + VFW A G ++ R
Sbjct: 20 QRPMSPHLQVYRYRLSMVLSIMNRITGVIATAGATLGVFWLGAAAKGPKAFATARKVTGN 79
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINII--ASILTVLIVWI 124
+ ++ L + +VI+H +GGIR+LIWD DKK + + + A + TVL +
Sbjct: 80 PLGQLVLVGWLASVIYHTVGGIRHLIWDSGYRYDKKEVNKDGPVAVGVTAGVSTVLAAGL 139
Query: 125 IK 126
+
Sbjct: 140 LA 141
>gi|110635575|ref|YP_675783.1| succinate dehydrogenase subunit C [Mesorhizobium sp. BNC1]
gi|110286559|gb|ABG64618.1| succinate dehydrogenase subunit C [Chelativorans sp. BNC1]
Length = 134
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 53/122 (43%), Positives = 72/122 (59%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
S RPLSPHLQIYR PTM +SI HRITG+ +Y G + W A+ +
Sbjct: 3 KSTTQARPLSPHLQIYRFTPTMAMSIAHRITGTALYFGILLFALWLLAAASSREQFDFVN 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + +F Y+W +IHHMLGGIR+LIWD L+K+ + ++A N+I SIL LI
Sbjct: 63 GLFGSIIGRIVIFGYSWVLIHHMLGGIRHLIWDTIHGLEKETSRRLAIANLIGSILVTLI 122
Query: 122 VW 123
+W
Sbjct: 123 IW 124
>gi|238650698|ref|YP_002916551.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
peacockii str. Rustic]
gi|238624796|gb|ACR47502.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
peacockii str. Rustic]
Length = 124
Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP SPHL IY+ + +SI++R+TG ++ ++V+W + L
Sbjct: 6 QEIYNKRPTSPHLTIYKPQISSTLSILYRMTGVALFFAVSILVWWLILSKYDNNYLQLAE 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
C + ++CL ++A +H+ GIR+L WD+ + ++ S+L ++
Sbjct: 66 CC----IIKICLVAVSYAWFYHLCNGIRHLFWDIGYGFSITLVNITCWCVVVGSVLLTVL 121
Query: 122 VWI 124
+W+
Sbjct: 122 LWV 124
>gi|315122380|ref|YP_004062869.1| succinate dehydrogenase protein, cytochrome b subunit [Candidatus
Liberibacter solanacearum CLso-ZC1]
gi|313495782|gb|ADR52381.1| succinate dehydrogenase protein, cytochrome b subunit [Candidatus
Liberibacter solanacearum CLso-ZC1]
Length = 129
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 83/128 (64%), Positives = 101/128 (78%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
MS +K+NRPLSPHLQIY+LIPTM +SIVHRITGS VY GTP +V WFF +A G++TL
Sbjct: 1 MSDLKSNRPLSPHLQIYKLIPTMLISIVHRITGSAVYFGTPALVLWFFAVAEGKYTLGLW 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
R Y D F + LFLYTW+ IHHMLGGIRYL+WD S L+KK++ MAKINIIASI V
Sbjct: 61 RSYTDCGFFSIFLFLYTWSAIHHMLGGIRYLMWDSSFLLEKKVSITMAKINIIASIFIVS 120
Query: 121 IVWIIKDI 128
++WI+K+I
Sbjct: 121 VIWIVKNI 128
>gi|170744094|ref|YP_001772749.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
sp. 4-46]
gi|168198368|gb|ACA20315.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacterium
sp. 4-46]
Length = 133
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 45/121 (37%), Positives = 71/121 (58%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHLQIYR TM +S+ HR+TG +Y GT +V W +A+G+ +
Sbjct: 11 RPLSPHLQIYRWTWTMAMSVAHRLTGIALYGGTALVAVWLVALASGKAAYDPVAWLYGSI 70
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKD 127
+ + +F+YTW ++HHMLGGIR+LIWD ++ MA+ ++ S + +++W
Sbjct: 71 LGRLVIFVYTWILMHHMLGGIRHLIWDFGHGMEPGTRIAMARYTLVGSAVLTVVIWAAAL 130
Query: 128 I 128
+
Sbjct: 131 L 131
>gi|28198267|ref|NP_778581.1| succinate dehydrogenase membrane anchor subunit [Xylella fastidiosa
Temecula1]
gi|28056337|gb|AAO28230.1| succinate dehydrogenase membrane anchor subunit [Xylella fastidiosa
Temecula1]
Length = 142
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 54/119 (45%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
RPLSPHLQ+YR M SI+HR TG + LG V+ + G R +
Sbjct: 14 TRERPLSPHLQVYRWQMQMVTSILHRATGVFLSLGVLVIAAGLLALMFGPEPWDYFRSCL 73
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + L ++TW +H+ GIR++ D + + +++ SI+ VW
Sbjct: 74 NLWYGQCFLLVWTWCFGYHLCNGIRHIAQDFGCGFAISSFLRSSWASVLGSIVITAGVW 132
>gi|319899436|ref|YP_004159533.1| SdhC succinate dehydrogenase cytochrome b-556 subunit [Bartonella
clarridgeiae 73]
gi|319403404|emb|CBI76972.1| SdhC succinate dehydrogenase cytochrome b-556 subunit [Bartonella
clarridgeiae 73]
Length = 152
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++ +RP SPHL IYR TM +SI HRITG ++Y G + W IA G + +
Sbjct: 23 TTTTKDRPRSPHLSIYRWSITMAISIAHRITGVMLYFGMLFLALWLVSIACGANAFRMIN 82
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIASILTVL 120
+ LF YT A +HHM+G IR+++W+++ CL K+ AT A + S++ +
Sbjct: 83 QIYESLPGLCLLFFYTLAGVHHMVGCIRHIVWNMNPCCLAKEKATSTAWATVFISLIVTI 142
Query: 121 IVWIIKDIV 129
+WII V
Sbjct: 143 AIWIIGYGV 151
>gi|319407790|emb|CBI81441.1| SdhC succinate dehydrogenase cytochrome b-556 subunit [Bartonella
sp. 1-1C]
Length = 152
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++ +RP SPHL +YR TM +SI HRITG V+Y G + W IA G +
Sbjct: 23 TTRTKDRPRSPHLSVYRWSITMAISIAHRITGIVLYFGMCFLALWLVSIACGPDAFKMVN 82
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMAKINIIASILTVL 120
+ LF YT A +HHM+G +R+++W+++ L K+ AT A + S++ +
Sbjct: 83 KIYGSFLGLCLLFFYTLAGVHHMVGCVRHIVWNLNPRYLAKEKATLTAWATVFISLIVTI 142
Query: 121 IVWIIKDIV 129
+WII V
Sbjct: 143 ALWIIGYGV 151
>gi|316931809|ref|YP_004106791.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodopseudomonas
palustris DX-1]
gi|315599523|gb|ADU42058.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodopseudomonas
palustris DX-1]
Length = 132
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 70/125 (56%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ + RPLSPH+Q YR TM +SIVHR TG +Y GT ++ +W A G ++++
Sbjct: 2 TARIERPLSPHMQAYRWSLTMTMSIVHRATGIALYSGTLLLAWWLIACAAGPAAYANVQA 61
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + + +F YTWA++HH+L G+R+ +WD+ + +I I+ +++
Sbjct: 62 FTGSWIGRLIVFGYTWALMHHLLSGVRHFVWDLGYGFKTADREWLTWAALIGGIVLTVLL 121
Query: 123 WIIKD 127
W+I
Sbjct: 122 WVIAY 126
>gi|15837672|ref|NP_298360.1| succinate dehydrogenase, membrane anchor subunit [Xylella
fastidiosa 9a5c]
gi|9106017|gb|AAF83880.1|AE003943_11 succinate dehydrogenase, membrane anchor subunit [Xylella
fastidiosa 9a5c]
Length = 142
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 56/120 (46%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
RPLSPHLQ+YR M SI+HR TG + LG V+ + G T R +
Sbjct: 14 TRERPLSPHLQVYRWQMQMVTSILHRATGVFLSLGVLVIAAGLLALMFGAATWDYFRSCL 73
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ + L ++TW +H+ GIR++ D + + +++ SI+ VW+
Sbjct: 74 NLWYGQCFLLVWTWCFGYHLCNGIRHIAQDFGCGFAISSFVRSSWASVLGSIVITAGVWV 133
>gi|86747453|ref|YP_483949.1| succinate dehydrogenase, cytochrome b subunit [Rhodopseudomonas
palustris HaA2]
gi|86570481|gb|ABD05038.1| succinate dehydrogenase subunit C [Rhodopseudomonas palustris HaA2]
Length = 132
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 71/125 (56%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ + +RPLSPH+Q YR TM +SIVHR TG +Y GT ++ +W A G ++++
Sbjct: 2 TARIDRPLSPHMQAYRWSLTMALSIVHRATGIALYFGTLLLAWWLIACAAGPAAYANVQA 61
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + + LF YTWA++HH+L G+R+ +WD+ + +I I+ +++
Sbjct: 62 FTGSWIGRLILFGYTWALMHHLLSGVRHFVWDLGYGFKTADREWLTWAALIGGIVLTVLL 121
Query: 123 WIIKD 127
W++
Sbjct: 122 WVVAF 126
>gi|194365313|ref|YP_002027923.1| succinate dehydrogenase, cytochrome b556 subunit [Stenotrophomonas
maltophilia R551-3]
gi|194348117|gb|ACF51240.1| succinate dehydrogenase, cytochrome b556 subunit [Stenotrophomonas
maltophilia R551-3]
Length = 130
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 61/120 (50%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
RPLSPHLQ+YR M SI+HR TG + +G ++ + G + + +
Sbjct: 3 TRQRPLSPHLQVYRWQIQMATSILHRATGVFLSVGALIIAAGLLALMMGPDSWNCFTGHA 62
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
V LF +TW+ +H+ GIR+++ D ++ + + +++I S++ L+VW
Sbjct: 63 GAWYGRVFLFAWTWSFAYHLCNGIRHVVQDFAIGFSIPAFIRSSWLSVIGSLVITLLVWA 122
>gi|71899418|ref|ZP_00681577.1| Succinate dehydrogenase, cytochrome b subunit [Xylella fastidiosa
Ann-1]
gi|71730827|gb|EAO32899.1| Succinate dehydrogenase, cytochrome b subunit [Xylella fastidiosa
Ann-1]
Length = 142
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 55/120 (45%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
RPLSPHLQIYR M SI+HR TG + LG V+ + G R +
Sbjct: 14 TRERPLSPHLQIYRWQMQMLTSILHRATGVFLSLGVLVIAAGLLALMFGAEPWDYFRSCL 73
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ + L ++TW +H+ GIR++ D + + +++ SI+ VW+
Sbjct: 74 NLWYGQCFLLVWTWCFGYHLCNGIRHIAQDFGCGFAISSFLRSSWASVLGSIVITAGVWV 133
>gi|190573776|ref|YP_001971621.1| putative succinate dehydrogenase cytochrome b-556 subunit
[Stenotrophomonas maltophilia K279a]
gi|190011698|emb|CAQ45317.1| putative succinate dehydrogenase cytochrome b-556 subunit
[Stenotrophomonas maltophilia K279a]
Length = 130
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 60/120 (50%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
RPLSPHLQ+YR M SI+HR TG + +G ++ + G + + +
Sbjct: 3 TRQRPLSPHLQVYRWQIQMATSILHRATGVFLSVGALIIAAGLLALMMGPESWNCFTGHA 62
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
V LF +TW+ +H+ GIR+++ D ++ + + +++ S++ L+VW
Sbjct: 63 GAWYGRVFLFAWTWSFAYHLCNGIRHVVQDFAIGFSIPAFIRSSWLSVTGSLVITLLVWA 122
>gi|182680904|ref|YP_001829064.1| succinate dehydrogenase, cytochrome b556 subunit [Xylella
fastidiosa M23]
gi|182631014|gb|ACB91790.1| succinate dehydrogenase, cytochrome b556 subunit [Xylella
fastidiosa M23]
Length = 131
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 54/119 (45%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
RPLSPHLQ+YR M SI+HR TG + LG V+ + G R +
Sbjct: 3 TRERPLSPHLQVYRWQMQMVTSILHRATGVFLSLGVLVIAAGLLALMFGPEPWDYFRSCL 62
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + L ++TW +H+ GIR++ D + + +++ SI+ VW
Sbjct: 63 NLWYGQCFLLVWTWCFGYHLCNGIRHIAQDFGCGFAISSFLRSSWASVLGSIVITAGVW 121
>gi|319404830|emb|CBI78431.1| SdhC succinate dehydrogenase cytochrome b-556 subunit [Bartonella
rochalimae ATCC BAA-1498]
Length = 152
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++ +RP SPHL +YR TM +SI HRITG V+Y G + W IA G T +
Sbjct: 23 TTTTKDRPRSPHLSVYRWSITMAISIAHRITGIVLYFGMCFLALWLVSIACGADTFKMVN 82
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMAKINIIASILTVL 120
LF YT A +HH++G +R+++W+++ L K+ AT A + S++ +
Sbjct: 83 KIYGSFPGLCFLFFYTLAGVHHIVGCVRHIVWNLNPRYLAKEKATSTAWATVFISLIVTI 142
Query: 121 IVWIIKDIV 129
+W+I V
Sbjct: 143 ALWVIGYGV 151
>gi|319406315|emb|CBI79952.1| SdhC succinate dehydrogenase cytochrome b-556 subunit [Bartonella
sp. AR 15-3]
Length = 133
Score = 129 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 48/129 (37%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++ +RP SPHL +YR TM +SI HRITG V+Y G + W IA G T +
Sbjct: 4 TTTTKDRPRSPHLSVYRWSITMAISIAHRITGIVLYFGMCFLALWLVSIACGADTFKMVN 63
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMAKINIIASILTVL 120
LF YT A +HHM+G IR+++W+++ CL K+ AT A + S++ +
Sbjct: 64 QIYRSFPGLCLLFFYTLAGVHHMVGCIRHIVWNMNPRCLAKEKATSTAWATVFISLIVTI 123
Query: 121 IVWIIKDIV 129
+WII V
Sbjct: 124 AIWIIGYGV 132
>gi|259415023|ref|ZP_05738945.1| succinate dehydrogenase, cytochrome b556 subunit [Silicibacter sp.
TrichCH4B]
gi|259348933|gb|EEW60687.1| succinate dehydrogenase, cytochrome b556 subunit [Silicibacter sp.
TrichCH4B]
Length = 127
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 63/121 (52%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL IYR T SI+ RITG +VV+W A E + + M
Sbjct: 6 RGNRPLSPHLTIYRPQLTSMSSIMVRITGIAALGVALLVVWWLLAAATSESAFAFIDGLM 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ ++ + WA+ +HMLG +R+++WD CL+ + + ++ I + + ++ I
Sbjct: 66 RSWLGDLVMLGAAWAIFYHMLGRLRHVVWDFGYCLEVETSEKLGIGMFIGATVLTVLAAI 125
Query: 125 I 125
+
Sbjct: 126 V 126
>gi|144898837|emb|CAM75701.1| succinate dehydrogenase cytochrome b556 subunit [Magnetospirillum
gryphiswaldense MSR-1]
Length = 138
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 65/122 (53%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
NRPLSPHL +YRL +SI HRITG + +G + +W A+G + +
Sbjct: 15 TRNRPLSPHLDVYRLPLLAIMSITHRITGVGLAIGMFALAWWLCAAASGPAEFAVAQAVF 74
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ ++ LF +T A+ H+ GIR+L+WD + A AK+ + A+++ +I WI
Sbjct: 75 GSFLGKLFLFGWTVALFFHLSHGIRHLLWDSGWGFEIPQAYLSAKVALGATVVLTVIAWI 134
Query: 125 IK 126
I
Sbjct: 135 IG 136
>gi|319409393|emb|CBI83037.1| SdhC succinate dehydrogenase cytochrome b-556 subunit [Bartonella
schoenbuchensis R1]
Length = 133
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/123 (37%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+RP SPHL IYR TM +SI HRITG +Y G W IA G T ++
Sbjct: 8 KDRPYSPHLSIYRWSITMAMSIAHRITGVALYFGMICFAIWLGAIACGSDTFKTVNGIYG 67
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLC-LDKKIATQMAKINIIASILTVLIVWI 124
LFL+T A +HHM+G IR+L+W++ C L K+ AT A + +++ +W+
Sbjct: 68 SFPGLCVLFLFTLAGVHHMVGCIRHLVWNMKPCLLAKEKATATAWATVFITLIVTCAIWV 127
Query: 125 IKD 127
I
Sbjct: 128 IGY 130
>gi|119385745|ref|YP_916800.1| succinate dehydrogenase, cytochrome b subunit [Paracoccus
denitrificans PD1222]
gi|119376340|gb|ABL71104.1| succinate dehydrogenase subunit C [Paracoccus denitrificans PD1222]
Length = 125
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP SP++Q YR T +S HR++G LG + W A+G+ S +
Sbjct: 1 MSHRRPKSPNMQNYRPQLTSVLSFGHRLSGVAQSLGALGLAAWLMAGASGQDAFGSAQAL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + LFL T A+ +H+ G+R+L+WD + + + S++ L +W
Sbjct: 61 LLSVPGRIALFLVTLALFYHLCNGVRHLVWDSGRGFELRAIYAGGWTVVGTSLILTLALW 120
>gi|304320539|ref|YP_003854182.1| succinate dehydrogenase cytochrome B-556 subunit [Parvularcula
bermudensis HTCC2503]
gi|303299441|gb|ADM09040.1| succinate dehydrogenase cytochrome B-556 subunit [Parvularcula
bermudensis HTCC2503]
Length = 142
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 45/125 (36%), Positives = 69/125 (55%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+RPLSPHLQI+R TM SI+HR TG +Y G+ ++V W A E + ++
Sbjct: 16 TGDRPLSPHLQIWRWSVTMATSILHRATGIALYAGSVLLVLWLLGGALTEGFYDGVTGFL 75
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ L +TWA + H+ GI+YLIWD L +++A + A +IAS + +VW+
Sbjct: 76 GSPFGILILVGFTWAQMFHLSNGIKYLIWDSGRLLQREVAKKTAWGVLIASFVLTALVWL 135
Query: 125 IKDIV 129
+ V
Sbjct: 136 VALSV 140
>gi|325920388|ref|ZP_08182319.1| succinate dehydrogenase subunit C [Xanthomonas gardneri ATCC 19865]
gi|325549135|gb|EGD20058.1| succinate dehydrogenase subunit C [Xanthomonas gardneri ATCC 19865]
Length = 130
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 57/119 (47%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YR M SI+HR TG ++ G V+ + G+ + L +
Sbjct: 4 RERPLSPHLQVYRWQIQMVTSILHRATGIILSGGALVIAAALLVLMLGQDHWTCLTQQLG 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
++ LF +TWA +H+ GIR+++ D + +++ S+L +W
Sbjct: 64 AWYGQLFLFGWTWAFAYHLSNGIRHIVQDFGYGYSIPAFVRSGWASVVVSLLITAAIWA 122
>gi|86138977|ref|ZP_01057548.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter sp.
MED193]
gi|85824208|gb|EAQ44412.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter sp.
MED193]
Length = 127
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 57/111 (51%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL IYR T SI+ RITG+ + + ++V+W A ++ M
Sbjct: 6 RGNRPLSPHLSIYRPQMTSLSSILTRITGNALIISVMLIVWWLLAAATSPAYFATANGVM 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
++ L L T + +H L G+R+L +D LD + A ++ +I S
Sbjct: 66 TSWFGDIVLALSTLGIWYHFLAGLRHLYFDAGHGLDIETAEKLGWGMMIGS 116
>gi|157803312|ref|YP_001491861.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
canadensis str. McKiel]
gi|157784575|gb|ABV73076.1| Succinate dehydrogenase cytochrome b-556 subunit [Rickettsia
canadensis str. McKiel]
Length = 124
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP+SPHL IY++ + +SI+HRITG ++ ++ +W + L
Sbjct: 6 QEIYNKRPISPHLSIYKMQISSTLSILHRITGVALFFAVSILAWWLILSKYDNNYLYLAS 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
CY + ++CL ++A +H+ GIRYL W + C K +I S L ++
Sbjct: 66 CY----IIKICLVAVSYAWFYHLCNGIRYLFWAIGYCFSIKAVNITGWCVVICSTLLTIL 121
Query: 122 VWI 124
+W+
Sbjct: 122 LWV 124
>gi|89068123|ref|ZP_01155540.1| succinate dehydrogenase, cytochrome b556 subunit [Oceanicola
granulosus HTCC2516]
gi|89046362|gb|EAR52419.1| succinate dehydrogenase, cytochrome b556 subunit [Oceanicola
granulosus HTCC2516]
Length = 127
Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 64/120 (53%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL ++R SI+ RITG+ + + ++V+WF +A G + ++
Sbjct: 6 RGNRPLSPHLTVWRWSLPAISSILTRITGNALIVAALMIVWWFVALATGPEAYARANGFI 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
++ +FL AV +H+ G+R+LIWD LD + A +IAS+L + I
Sbjct: 66 TSWFGDLVMFLSVLAVWYHLFAGVRHLIWDQGYMLDVSSSETYATAAMIASVLLTIFTAI 125
>gi|312112888|ref|YP_004010484.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodomicrobium
vannielii ATCC 17100]
gi|311218017|gb|ADP69385.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodomicrobium
vannielii ATCC 17100]
Length = 148
Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 67/117 (57%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
+P+SPHL IYR M +SI+HR+TG Y G+ ++ W A E +++ Y+
Sbjct: 15 PKPMSPHLSIYRFKINMILSIMHRVTGITNYFGSLILAIWIASAATSEQAFNTVSSYLAT 74
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ V L +TW+V+HHMLGGIR+ +WDV K+ ++ ++I SI I+W
Sbjct: 75 PLGLVILIGFTWSVMHHMLGGIRHFVWDVGWGFSKEAVKFLSWASLIGSITLTAIIW 131
>gi|49474757|ref|YP_032799.1| succinate dehydrogenase cytochrome b560 subunit [Bartonella
quintana str. Toulouse]
gi|49240261|emb|CAF26731.1| Succinate dehydrogenase cytochrome b560 subunit [Bartonella
quintana str. Toulouse]
Length = 133
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 49/126 (38%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+++ RP SPH+ IYR TM +SI HRITG +Y G W IA G+ ++
Sbjct: 4 TTMIKERPRSPHVSIYRWTITMAMSIAHRITGLGLYFGMIFFTIWLISIACGDEMFRTVH 63
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLC-LDKKIATQMAKINIIASILTVL 120
LFLYT A +HHM+G IR+++WD++ C LDKK A A + S++ L
Sbjct: 64 EIYSSLPGLCILFLYTLAGVHHMVGDIRHIVWDMNPCLLDKKKAVLTAWATVFISLIVTL 123
Query: 121 IVWIIK 126
+WII
Sbjct: 124 TIWIIG 129
>gi|121602258|ref|YP_988426.1| succinate dehydrogenase, cytochrome b556 subunit [Bartonella
bacilliformis KC583]
gi|120614435|gb|ABM45036.1| succinate dehydrogenase, cytochrome b556 subunit [Bartonella
bacilliformis KC583]
Length = 133
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 50/125 (40%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+RP SPH+ IYR TM +SI HRITG +Y G ++ W IA GE ++
Sbjct: 8 KDRPRSPHVTIYRWSITMAMSIAHRITGIAIYFGISLLAIWLMAIACGESAFKTVNEIYG 67
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLC-LDKKIATQMAKINIIASILTVLIVWI 124
LFL T+A +HHM+G IR+LI ++ C LDKK A +A NI S +++W+
Sbjct: 68 SFFGLCVLFLCTFAGVHHMVGDIRHLIGELKPCLLDKKQANFIAWANIFISFSATVVIWV 127
Query: 125 IKDIV 129
I V
Sbjct: 128 IGYSV 132
>gi|148260873|ref|YP_001235000.1| succinate dehydrogenase, cytochrome b subunit [Acidiphilium cryptum
JF-5]
gi|146402554|gb|ABQ31081.1| succinate dehydrogenase subunit C [Acidiphilium cryptum JF-5]
Length = 143
Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RPLSPHLQ+YR T +SI+HRITG + G ++ W A S + +
Sbjct: 20 RRPLSPHLQVYRPQITSTLSILHRITGVALSAGAVLLSLWLAAAATSSGAFSVAQAIVGS 79
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQM 107
+ + LF +T+A+ +H GIR+L+WD + + +
Sbjct: 80 ILGMIVLFGFTFALFYHFCNGIRHLLWDAGVGFELPSVHRS 120
>gi|119383319|ref|YP_914375.1| succinate dehydrogenase, cytochrome b subunit [Paracoccus
denitrificans PD1222]
gi|2493412|sp|Q59659|DHSC_PARDE RecName: Full=Succinate dehydrogenase cytochrome b556 subunit;
Short=Cytochrome b-556
gi|975316|gb|AAA75175.1| succinate dehydrogenase b-type cytochrome subunit [Paracoccus
denitrificans]
gi|119373086|gb|ABL68679.1| succinate dehydrogenase subunit C [Paracoccus denitrificans PD1222]
Length = 130
Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 61/121 (50%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHLQ+YRL SI+ RITG + G ++ +W + +
Sbjct: 6 RGNRPLSPHLQVYRLPLAAITSIMTRITGHALVAGIVLITWWLVAAVTSPGAFACADWVV 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ + L WA+ +H+L G+R+L +D L+ + A + ++ I S++ ++ I
Sbjct: 66 RSWLGFIILTGSMWALWYHLLAGLRHLFYDAGYGLEIEQAHKSSQALIAGSVVLAVLTLI 125
Query: 125 I 125
+
Sbjct: 126 V 126
>gi|326404267|ref|YP_004284349.1| succinate dehydrogenase cytochrome b subunit [Acidiphilium
multivorum AIU301]
gi|325051129|dbj|BAJ81467.1| succinate dehydrogenase cytochrome b subunit [Acidiphilium
multivorum AIU301]
Length = 147
Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RPLSPHLQ+YR T +SI+HRITG + G ++ W A S + +
Sbjct: 24 RRPLSPHLQVYRPQITSTLSILHRITGVALSAGAVLLSLWLAAAATSSGAFSVAQAIVGS 83
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQM 107
+ + LF +T+A+ +H GIR+L+WD + + +
Sbjct: 84 ILGMIVLFGFTFALFYHFCNGIRHLLWDAGVGFELPSVHRS 124
>gi|285018596|ref|YP_003376307.1| succinate dehydrogenase_cytochrome b subunit protein [Xanthomonas
albilineans GPE PC73]
gi|283473814|emb|CBA16316.1| putative succinate dehydrogenase_cytochrome b subunit protein
[Xanthomonas albilineans]
Length = 130
Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 62/120 (51%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
RPLSPHLQ+YR M SIVHR TG V+ G ++V + G+ + R
Sbjct: 3 TRERPLSPHLQVYRWQIQMVTSIVHRATGIVLAFGALLIVAALLLLMCGQASWDCFRALA 62
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+V LF ++WA +H+ G+R+++ D + + +++I S++ V ++W+
Sbjct: 63 GAWYGQVFLFAWSWAFAYHLCNGLRHIVQDFGHGFSIPAFLRSSWLSVIGSLVIVALIWV 122
>gi|254292677|ref|YP_003058700.1| succinate dehydrogenase, cytochrome b556 subunit [Hirschia baltica
ATCC 49814]
gi|254041208|gb|ACT58003.1| succinate dehydrogenase, cytochrome b556 subunit [Hirschia baltica
ATCC 49814]
Length = 136
Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 64/123 (52%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RPLSPHLQ+++ PTM SI+ RITG +G ++V W F IA+G +
Sbjct: 9 KRPLSPHLQVWKFHPTMLTSILQRITGVGNAIGVVLIVGWLFAIASGSDVFKCFDVFFTS 68
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
++ LF +T +V++H+ GIR+L WD +A + I +L + VWI
Sbjct: 69 IFGKIILFGFTVSVMYHLGQGIRFLFWDAGKGFTPAVANFWSYFTIAFGLLGAVAVWIFA 128
Query: 127 DIV 129
+V
Sbjct: 129 GLV 131
>gi|49476235|ref|YP_034276.1| succinate dehydrogenase cytochrome b560 subunit [Bartonella
henselae str. Houston-1]
gi|49239043|emb|CAF28343.1| Succinate dehydrogenase cytochrome b560 subunit [Bartonella
henselae str. Houston-1]
Length = 133
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 47/123 (38%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RP SPH+ IYR TM +SI HRITG +Y G + W I+ G ++
Sbjct: 8 KQRPRSPHVSIYRWTITMAMSIAHRITGIALYFGMVFLAIWLISISCGVEAFRTVHRIYT 67
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLC-LDKKIATQMAKINIIASILTVLIVWI 124
LFLYT A IHHM+GG+R+++WD+ C L K+ AT A + S++ +WI
Sbjct: 68 SFPGLCILFLYTLAGIHHMVGGVRHIVWDIKPCLLAKEKATMTAWATVFISLIITFTIWI 127
Query: 125 IKD 127
I
Sbjct: 128 IGY 130
>gi|91205983|ref|YP_538338.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia bellii
RML369-C]
gi|157826653|ref|YP_001495717.1| succinate dehydrogenase cytochrome b-556 subunit [Rickettsia bellii
OSU 85-389]
gi|122425294|sp|Q1RHB5|DHSC_RICBR RecName: Full=Succinate dehydrogenase cytochrome b556 subunit;
Short=Cytochrome b-556
gi|91069527|gb|ABE05249.1| Succinate dehydrogenase cytochrome b-556 subunit [Rickettsia bellii
RML369-C]
gi|157801957|gb|ABV78680.1| Succinate dehydrogenase cytochrome b-556 subunit [Rickettsia bellii
OSU 85-389]
Length = 125
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP SPHL IY+ + +SI+HR+TG ++ ++ +WF + +
Sbjct: 6 QEIYNKRPTSPHLTIYKPQISSTLSILHRMTGVALFFAVSILAWWFILSKFDSNYIKLAN 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
C + + ++A +H+ GIR+L WD+ L K +I S+L ++
Sbjct: 66 CCCIIKICLIL---TSFAWFYHLCNGIRHLFWDIGLGFSIKAVNLTGWSVVICSVLFTIL 122
Query: 122 VWI 124
+W+
Sbjct: 123 LWV 125
>gi|114764872|ref|ZP_01444054.1| Succinate dehydrogenase cytochrome b-556 subunit [Pelagibaca
bermudensis HTCC2601]
gi|114542758|gb|EAU45781.1| Succinate dehydrogenase cytochrome b-556 subunit [Roseovarius sp.
HTCC2601]
Length = 131
Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 5 KNNRPLSPHL--QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ RPLSP + Q YRL T S++ RITG+ + + T +V++W +A G +
Sbjct: 6 RIERPLSPFMFVQYYRLQLTAVTSVMIRITGNALMVATLLVIWWLLALAAGPEAFETAEW 65
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
++ V + +F WAV +H LGG+R+LI+D L+ + A ++ + S++ ++
Sbjct: 66 WITSWVGNLVMFGSLWAVWYHYLGGLRHLIFDAGKGLELETAEKLGWACVYGSVVLTVLT 125
Query: 123 WII 125
II
Sbjct: 126 VII 128
>gi|209883444|ref|YP_002287301.1| succinate dehydrogenase cytochrome b556 subunit [Oligotropha
carboxidovorans OM5]
gi|209871640|gb|ACI91436.1| succinate dehydrogenase cytochrome b556 subunit [Oligotropha
carboxidovorans OM5]
Length = 131
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RPLSP L YR TM +S++HR TG +Y GT ++ + A+ + +
Sbjct: 4 QTDRPLSPFLT-YRWTLTMAMSLIHRATGIALYGGTLLMAWGLIATASSPAAYACFEAFA 62
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ + +F +TW+++HH L G+RYL+WD M + +I +L + VW
Sbjct: 63 TSWIGRIAIFGFTWSLMHHALSGLRYLVWDTGHGYAPGPREGMTRGALIGGVLATIAVWA 122
Query: 125 IK 126
I
Sbjct: 123 IA 124
>gi|262277891|ref|ZP_06055684.1| succinate dehydrogenase, cytochrome b556 subunit [alpha
proteobacterium HIMB114]
gi|262224994|gb|EEY75453.1| succinate dehydrogenase, cytochrome b556 subunit [alpha
proteobacterium HIMB114]
Length = 122
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 56/122 (45%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K PLSPHLQ+Y+ + +SI HR+T +G W F + GE +
Sbjct: 1 MKFESPLSPHLQVYKWQLSSLLSITHRMTSIFNLMGMMFFALWIFMLFLGEDVYKYFEIF 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + W+ +H+L GIR+L WD+ + K A +++S + +VW
Sbjct: 61 SATVIGKFIFVGIIWSFSYHLLNGIRHLFWDMGYGYEIKTANLSGIFVLLSSFILTFLVW 120
Query: 124 II 125
+
Sbjct: 121 VF 122
>gi|6649873|gb|AAF21608.1|AF018287_2 SdhC [papaya bunchy top disease rickettsia]
Length = 125
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
I N RP SPHL IY+ + +SI+HR+TG ++ ++ +WF + +
Sbjct: 6 QEIYNKRPTSPHLTIYKPRISSTLSILHRMTGVALFFAVSILAWWFIFSKFDSNYIQLAN 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
C + + ++A +H+ GIR+L WD+ K +I S+L ++
Sbjct: 66 CCCIIKICLIL---TSFAWFYHLCNGIRHLFWDIGYGFPIKAVNLTGWSVVICSVLFTIL 122
Query: 122 VWI 124
+WI
Sbjct: 123 LWI 125
>gi|126311342|ref|XP_001381718.1| PREDICTED: similar to QPS1 [Monodelphis domestica]
Length = 264
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ +NRPLSPH+ IY M +SI HR +G + G + + N E + L
Sbjct: 139 KNTNSNRPLSPHITIYSWSLPMAMSICHRASGIALSAGVSLFGLAALLLPGNFESHVELL 198
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G + F +++H GIR+L WD+ + L Q + + ++L+
Sbjct: 199 KSLSLGPALIHTAKFALVSPLMYHTWNGIRHLTWDLGMGLKIPQLYQSGVVVLALTVLSS 258
Query: 120 LIVWII 125
+ + +
Sbjct: 259 IGLAAM 264
>gi|221220816|gb|ACM09069.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
gi|221221340|gb|ACM09331.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
gi|221221580|gb|ACM09451.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
Length = 170
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTP-VVVFWFFCIANGEHTLSSL 60
+ K NRP+SPHL IY+ M +SI HR TG + G + N + L +
Sbjct: 44 KNNKLNRPVSPHLTIYKWSLPMMMSITHRGTGVGLSGGISAFALLALVLPGNYPYYLDLI 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
G + + F + V +H L GIR+L WD + + I+ SILT
Sbjct: 104 HSLSVGPALLSLAKFGIAFPVSYHTLNGIRHLFWDSGKGFKIPEVYRSGYVVIVLSILTS 163
Query: 120 LI 121
+
Sbjct: 164 IA 165
>gi|49077638|gb|AAT49701.1| PA1581 [synthetic construct]
Length = 129
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++ + RP++ L+ +L T + SI+HRI+G +++LG V++F + E ++
Sbjct: 3 KAVNSKRPVNLDLRTIKLPVTAYTSILHRISGVILFLGIAVLLFALDKSLSSEEGFEQVK 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + ++ ++ A+++H++ G+R+L+ D + + + +KI I +++ +++
Sbjct: 63 ACLTSPLAKLVIWGLLSALLYHLVAGVRHLVMDAGVGETLEGGKRGSKIVIAIAVVLIVL 122
Query: 122 --VWI 124
VW+
Sbjct: 123 AGVWV 127
>gi|240848787|ref|NP_001155673.1| succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like
[Acyrthosiphon pisum]
gi|239788025|dbj|BAH70709.1| ACYPI006695 [Acyrthosiphon pisum]
Length = 175
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+ + NRP+SPHL IY+ T +SI HR TG + G + F + + +
Sbjct: 50 KNNRLNRPMSPHLAIYKPQLTTILSITHRGTGVALS-GVTAGLGALFIFTDLPTFVQFVH 108
Query: 62 CY-MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + L + +H+ GIR+L+WD CL K I+ S+L +
Sbjct: 109 GLELPSAAIMSAKGLVAYPFFYHLCNGIRHLVWDAGKCLTIKQVYSTGYGVIVGSLLLTV 168
Query: 121 I 121
+
Sbjct: 169 L 169
>gi|15596778|ref|NP_250272.1| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa PAO1]
gi|116049526|ref|YP_791670.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
aeruginosa UCBPP-PA14]
gi|218892462|ref|YP_002441329.1| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa LESB58]
gi|254234682|ref|ZP_04928005.1| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa C3719]
gi|254239930|ref|ZP_04933252.1| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa 2192]
gi|296390045|ref|ZP_06879520.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
aeruginosa PAb1]
gi|9947544|gb|AAG04970.1|AE004586_8 succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa PAO1]
gi|115584747|gb|ABJ10762.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
aeruginosa UCBPP-PA14]
gi|126166613|gb|EAZ52124.1| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa C3719]
gi|126193308|gb|EAZ57371.1| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa 2192]
gi|218772688|emb|CAW28473.1| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa LESB58]
Length = 128
Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++ + RP++ L+ +L T + SI+HRI+G +++LG V++F + E ++
Sbjct: 3 KAVNSKRPVNLDLRTIKLPVTAYTSILHRISGVILFLGIAVLLFALDKSLSSEEGFEQVK 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + ++ ++ A+++H++ G+R+L+ D + + + +KI I +++ +++
Sbjct: 63 ACLTSPLAKLVIWGLLSALLYHLVAGVRHLVMDAGVGETLEGGKRGSKIVIAIAVVLIVL 122
Query: 122 --VWI 124
VW+
Sbjct: 123 AGVWV 127
>gi|221219992|gb|ACM08657.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
Length = 170
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTP-VVVFWFFCIANGEHTLSSL 60
+ K NRP+SPHL IY+ M +SI HR TG + G + N + L +
Sbjct: 44 KNNKLNRPVSPHLTIYKWSLPMMMSITHRGTGVGLSGGISAFALLALVLPGNYPYYLDLI 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
G + + F + V +H L GIR+L WD + + I+ SILT
Sbjct: 104 HSLSVGPALLSLAKFGIAFPVSYHTLNGIRHLFWDSGKGFKIPEVYRSGYVVIVLSILTS 163
Query: 120 LI 121
+
Sbjct: 164 IA 165
>gi|2137070|pir||I48085 integral membrane protein CII-3 - Chinese hamster (fragment)
Length = 171
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ + RP+SPHL IYR M +SI HR TG + G + + N E L +
Sbjct: 48 KNTSSKRPVSPHLTIYRWSLPMVMSICHRGTGVALSGGVSLFGLSALLLPGNFESYLMFI 107
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G + F+ + +++H L GIR+LIWD+ L Q ++ ++L+
Sbjct: 108 KSLCLGPALIHSAKFVLVFPLMYHSLNGIRHLIWDLGKGLSISQVYQSGVAVLMLAVLSS 167
Query: 120 L 120
+
Sbjct: 168 V 168
>gi|221219496|gb|ACM08409.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
gi|221219988|gb|ACM08655.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
gi|221221046|gb|ACM09184.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
Length = 170
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTP-VVVFWFFCIANGEHTLSSL 60
+ K NRP+SPHL IY+ M +SI HR TG + G + N + L +
Sbjct: 44 KNNKLNRPVSPHLTIYKWSLPMMMSITHRGTGVGLSGGISAFALLALVLPGNYPYYLDLI 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
G + + F + V +H L GIR+L WD + + I+ SILT
Sbjct: 104 HSLSVGPALLSLAKFGIAFPVSYHTLNGIRHLFWDSGKGFKIPEVYRSGYVVIVLSILTS 163
Query: 120 LI 121
+
Sbjct: 164 IA 165
>gi|152985839|ref|YP_001349047.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
aeruginosa PA7]
gi|150960997|gb|ABR83022.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
aeruginosa PA7]
Length = 128
Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 69/125 (55%), Gaps = 2/125 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++ + RP++ L+ +L T + SI+HRI+G +++LG V++F E ++
Sbjct: 3 KAVNSKRPVNLDLRTIKLPVTAYTSILHRISGVILFLGIAVLLFALDKSLRSEEGFEQVK 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + ++ ++ A+++H++ GIR+L+ D + + + +KI I +++ +++
Sbjct: 63 ACLTSPLAKLVIWGLLSALLYHLVAGIRHLVMDAGVGETLEGGKRGSKIVIAIAVVLIVL 122
Query: 122 --VWI 124
VW+
Sbjct: 123 AGVWV 127
>gi|290463150|sp|D0VWV4|C560_PIG RecName: Full=Succinate dehydrogenase cytochrome b560 subunit,
mitochondrial; AltName: Full=Succinate-ubiquinone
oxidoreductase cytochrome B large subunit; Short=CYBL;
Flags: Precursor
Length = 169
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
++ +NRPLSPH+ IYR M +SI HR TG + G + + N E L +
Sbjct: 44 KNLGSNRPLSPHITIYRWSLPMAMSICHRGTGIALSAGVSLFGLSALLLPGNFESHLELV 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G + F + +++H GIR+LIWD+ L TQ + +I ++L+
Sbjct: 104 KSLCLGPTLIYTAKFGIVFPLMYHTWNGIRHLIWDLGKGLTIPQLTQSGVVVLILTVLSS 163
Query: 120 LIVWII 125
+ + +
Sbjct: 164 VGLAAM 169
>gi|221220716|gb|ACM09019.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
Length = 170
Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTP-VVVFWFFCIANGEHTLSSL 60
+ K NRP+SPHL IY+ M +SI HR TG + G + N + L +
Sbjct: 44 KNNKLNRPVSPHLTIYKWSLPMMMSITHRGTGVGLSGGISAFALLALVLPGNYPYYLDLI 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
G + + F + V +H L GIR+L WD + + I+ SILT
Sbjct: 104 HSLSVGPALLSLAKFGIAFPVSYHTLNGIRHLFWDSGKGFKIPEVYRSGYVVIVLSILTS 163
Query: 120 LI 121
+
Sbjct: 164 IA 165
>gi|84684219|ref|ZP_01012121.1| Succinate dehydrogenase cytochrome b-556 subunit [Maritimibacter
alkaliphilus HTCC2654]
gi|84667972|gb|EAQ14440.1| Succinate dehydrogenase cytochrome b-556 subunit [Rhodobacterales
bacterium HTCC2654]
Length = 127
Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 1 MSSIK-NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
M+ + NRPLSPHLQ YRL +SI+HRITG + ++V++F +A G +
Sbjct: 1 MADVNQGNRPLSPHLQAYRLPLNAKLSILHRITGVAMGFSGVLIVWYFLALATGPEYFET 60
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ ++ FL A+ H G+R+LIWD +K + A I I +
Sbjct: 61 ASAVLTSWFGDIVFFLSICALWLHFANGVRHLIWDTGSHFGQKTVNRSALIGIGFA 116
>gi|209737836|gb|ACI69787.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
gi|303658983|gb|ADM15942.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
Length = 170
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTP-VVVFWFFCIANGEHTLSSL 60
+ K NRP+SPH+ IY+ M +SI HR TG + G + N + L +
Sbjct: 44 KNNKLNRPMSPHITIYQWSVPMMMSITHRGTGVGLSGGISAFALLALVLPGNYPYYLDLI 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
G + + F + + +H L GIR+L WD + + I+ SILT
Sbjct: 104 HSLSIGPALLGLAKFGIAFPLSYHTLNGIRHLFWDSGKGFTLPEVYRSGYVVIVLSILTS 163
Query: 120 LI 121
+
Sbjct: 164 IA 165
>gi|332188523|ref|ZP_08390243.1| succinate dehydrogenase, cytochrome b556 subunit [Sphingomonas sp.
S17]
gi|332011428|gb|EGI53513.1| succinate dehydrogenase, cytochrome b556 subunit [Sphingomonas sp.
S17]
Length = 161
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVY-LGTPVVVFWFFCIANGEHTLSS 59
+++ RPLSPHLQI++ P M VSI+HR TG+ + +G ++V++ IA G + ++
Sbjct: 26 LAARNTARPLSPHLQIWKWGPNMLVSILHRATGTGMATVGAALLVWFLAAIAGGPESYAT 85
Query: 60 LRCYMD------GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINII 113
R + V T + H+ GIR+L DV + K + A+ I+
Sbjct: 86 FRDVFTVQSGRLNIIGYVVGIGLTACLFQHLANGIRHLFMDVGAGFELKSNKRQAQATIV 145
Query: 114 ASILTVLIVWIIKDI 128
+++ + W+ I
Sbjct: 146 FAVVMTVAFWLYLGI 160
>gi|254477708|ref|ZP_05091094.1| succinate dehydrogenase, cytochrome b556 subunit [Ruegeria sp. R11]
gi|214031951|gb|EEB72786.1| succinate dehydrogenase, cytochrome b556 subunit [Ruegeria sp. R11]
Length = 127
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 63/121 (52%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHLQIYR T SI R TG ++ + V+W A E + +
Sbjct: 6 RGNRPLSPHLQIYRPQLTSASSIFVRATGIAIFFLMLLAVWWLLAAATSEAAFGFIDGLL 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
G + ++ L TW++ + MLG +R++IWD CLD + + +M + IA+ + I
Sbjct: 66 RGWLGDIILLGATWSIWYLMLGRLRHVIWDFGHCLDVETSEKMGQGMFIAATALTVFTAI 125
Query: 125 I 125
+
Sbjct: 126 V 126
>gi|154251886|ref|YP_001412710.1| succinate dehydrogenase cytochrome b556 subunit [Parvibaculum
lavamentivorans DS-1]
gi|154155836|gb|ABS63053.1| Succinate dehydrogenase cytochrome b556 subunit [Parvibaculum
lavamentivorans DS-1]
Length = 135
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 71/119 (59%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHLQIYR+ TM +SI+HR TG +Y GT +V +W A G ++ +
Sbjct: 10 RPLSPHLQIYRVTITMAMSIIHRFTGMGLYAGTALVAWWLVAAATGPEAYATFQAVAGSW 69
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
+ ++ LF +TWA++HH+ GG+RYL+WD + + A ++ IA++L + VW
Sbjct: 70 IGQLVLFGFTWALLHHLFGGLRYLLWDAIVATSPRSADIISWAATIAALLATVAVWFAA 128
>gi|84500178|ref|ZP_00998444.1| succinate dehydrogenase, cytochrome b556 subunit [Oceanicola
batsensis HTCC2597]
gi|84392112|gb|EAQ04380.1| succinate dehydrogenase, cytochrome b556 subunit [Oceanicola
batsensis HTCC2597]
Length = 129
Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 5 KNNRPLSPHL--QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ NRPLSP + Q YR SI+ RITG+ + + ++ +WF A G
Sbjct: 6 RGNRPLSPFMLGQYYRFQLNSVASILTRITGNALIVAAFLIAWWFMAAAAGPEYFRVADY 65
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ V ++ L T + +H L G+R+LIWD LD + + +M+ I I S++ L+
Sbjct: 66 VITSWVGDLILLFSTLGLWYHTLAGVRHLIWDNGYLLDMESSDKMSWIIIGGSVVLTLLT 125
Query: 123 WII 125
II
Sbjct: 126 VII 128
>gi|323138215|ref|ZP_08073287.1| succinate dehydrogenase, cytochrome b556 subunit [Methylocystis sp.
ATCC 49242]
gi|322396467|gb|EFX98996.1| succinate dehydrogenase, cytochrome b556 subunit [Methylocystis sp.
ATCC 49242]
Length = 135
Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 45/129 (34%), Positives = 75/129 (58%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ + RPLSPHL +Y+ + TM +SI HRITG+ +Y+G ++ + A G S+
Sbjct: 6 LDKLAAKRPLSPHLSVYKPMLTMMMSIAHRITGAGLYVGMALLALFLLGAAMGGWVFSAF 65
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
G + + +FL TWA+ HH+LGG+R+ +WD L +D K +A+ + + L
Sbjct: 66 SWLGSGFIGGLIVFLVTWAIFHHLLGGVRHALWDRGLYMDPKGREFLAQATLGGGVTLTL 125
Query: 121 IVWIIKDIV 129
+VW++K +V
Sbjct: 126 LVWVLKSLV 134
>gi|73535958|pdb|1ZOY|C Chain C, Crystal Structure Of Mitochondrial Respiratory Complex Ii
From Porcine Heart At 2.4 Angstroms
gi|73535962|pdb|1ZP0|C Chain C, Crystal Structure Of Mitochondrial Respiratory Complex Ii
Bound With 3-Nitropropionate And
2-Thenoyltrifluoroacetone
gi|322812260|pdb|3ABV|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide
gi|322812268|pdb|3AE1|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Phenyl-2-(Trifluoromethyl)-Benzamide
gi|322812272|pdb|3AE2|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Hydroxy-N-Phenyl-Benzamide
gi|322812276|pdb|3AE3|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Nitro-N-Phenyl-Benzamide
gi|322812280|pdb|3AE4|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Methyl-Benzamide
gi|322812284|pdb|3AE5|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Methyl-N-(3-Isopropoxy-Phenyl)-Benzamide
gi|322812288|pdb|3AE6|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-(3-Isopropoxy-Phenyl)-Phthalamicacid
gi|322812292|pdb|3AE7|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(3-Isopropoxy-Phenyl)-Benzamide
gi|322812296|pdb|3AE8|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Isopropoxy-Phenyl)-2-Trifluoromethylbenzamide
gi|322812300|pdb|3AE9|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Pentafluorophenyloxy-Phenyl)-2-Trifluoromethyl-
Benzamide
gi|322812304|pdb|3AEA|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Dimethylaminomethyl-Phenyl)-2-Trifluoromethyl-
Benzamide
gi|322812308|pdb|3AEB|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide
gi|322812312|pdb|3AEC|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(1-Methylethyl)-Benzamid
gi|322812316|pdb|3AED|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Phenyl-Benzamide
gi|322812320|pdb|3AEE|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With Atpenin A5
gi|322812324|pdb|3AEF|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii With An Empty Quinone-Binding Pocket
gi|322812328|pdb|3AEG|C Chain C, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Biphenyl-3-Yl-2-Iodo-Benzamide
Length = 140
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
++ +NRPLSPH+ IYR M +SI HR TG + G + + N E L +
Sbjct: 15 KNLGSNRPLSPHITIYRWSLPMAMSICHRGTGIALSAGVSLFGLSALLLPGNFESHLELV 74
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G + F + +++H GIR+LIWD+ L TQ + +I ++L+
Sbjct: 75 KSLCLGPTLIYTAKFGIVFPLMYHTWNGIRHLIWDLGKGLTIPQLTQSGVVVLILTVLSS 134
Query: 120 LIVWII 125
+ + +
Sbjct: 135 VGLAAM 140
>gi|21362398|sp|P70097|C560_CRIGR RecName: Full=Succinate dehydrogenase cytochrome b560 subunit,
mitochondrial; AltName: Full=Integral membrane protein
CII-3; AltName: Full=QPs-1; Short=QPs1; Flags: Precursor
gi|1518874|gb|AAB07265.1| integral membrane protein CII-3 [Cricetulus griseus]
Length = 169
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ + RP+SPHL IYR M +SI HR TG + G + + N E L +
Sbjct: 44 KNTSSKRPVSPHLTIYRWSLPMVMSICHRGTGVALSGGVSLFGLSALLLPGNFESYLMFI 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G + F+ + +++H L GIR+LIWD+ L Q ++ ++L+
Sbjct: 104 KSLCLGPALIHSAKFVLVFPLMYHSLNGIRHLIWDLGKGLSISQVYQSGVAVLMLAVLSS 163
Query: 120 LIVWII 125
+ + +
Sbjct: 164 VGLAAM 169
>gi|83944805|ref|ZP_00957171.1| succinate dehydrogenase, cytochrome b556 subunit [Oceanicaulis
alexandrii HTCC2633]
gi|83851587|gb|EAP89442.1| succinate dehydrogenase, cytochrome b556 subunit [Oceanicaulis
alexandrii HTCC2633]
Length = 134
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RP+SPHL+I+R TM SI HR TG Y+G + W +A G M G
Sbjct: 8 PRPISPHLEIWRWHATMASSIFHRATGVGNYIGAIFLTLWLVLLAAGPDAYGGFEALMAG 67
Query: 67 SVFEVCLFLY---TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + + T ++I+H++ G+R+L+WD + K A + IIASIL + +W
Sbjct: 68 PLGLLVKLVLFLFTLSLIYHLINGVRHLVWDAGKGFEPKFANTASMAIIIASILVTVAIW 127
Query: 124 IIKD 127
++
Sbjct: 128 LLSG 131
>gi|84515883|ref|ZP_01003244.1| succinate dehydrogenase, cytochrome b556 subunit [Loktanella
vestfoldensis SKA53]
gi|84510325|gb|EAQ06781.1| succinate dehydrogenase, cytochrome b556 subunit [Loktanella
vestfoldensis SKA53]
Length = 127
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 64/121 (52%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL IYR T SI+ RITG+ + + ++V+WF A G + +
Sbjct: 6 RGNRPLSPHLTIYRPQWTSITSILVRITGNALLVAGLLIVWWFVAAATGPAAFALADGVL 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
++ + WA+ +H LGG+R+L+WD LD + + + + S++ +I I
Sbjct: 66 TSWFGKLVMLGSIWALWYHSLGGLRHLVWDSGRMLDVASSERAGQAMVALSVVLTIITVI 125
Query: 125 I 125
I
Sbjct: 126 I 126
>gi|260576579|ref|ZP_05844567.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacter sp.
SW2]
gi|259021183|gb|EEW24491.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacter sp.
SW2]
Length = 131
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 1 MSSIKNN--RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLS 58
M+ K RPLSPHLQ+YR+ +M S++ RITG + G + V+W A +
Sbjct: 1 MAEAKREIVRPLSPHLQVYRMKASMATSVLIRITGVGLMSGFILFVWWLLAAAISPEYFA 60
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA---- 114
+ + + A+ +H LGG+R+L WD LD + +++ +I
Sbjct: 61 FVNGIVTSWFGYLIFIGSLAAIWYHYLGGLRHLYWDTGKGLDLETVDKLSWGMVIGTPVL 120
Query: 115 SILTVLIVWII 125
++LT+L +W I
Sbjct: 121 TVLTILAIWGI 131
>gi|57111445|ref|XP_536140.1| PREDICTED: similar to succinate dehydrogenase complex, subunit C
precursor [Canis familiaris]
Length = 169
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ NRPLSPH+ IY M +SI HR TG + G + + N E L +
Sbjct: 44 KNTDLNRPLSPHITIYSWSLPMAMSICHRGTGVALSAGVSLFGLSALLVPGNFESHLELV 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G + F + +++H GIR+LIWD+ L Q ++ ++L+
Sbjct: 104 KSLCLGPSLIYTAKFALVFPLMYHTWNGIRHLIWDLGKGLKIPQLYQSGVAVLVLTVLSS 163
Query: 120 LIVWII 125
+ + +
Sbjct: 164 VGLAAM 169
>gi|166712288|ref|ZP_02243495.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas oryzae
pv. oryzicola BLS256]
Length = 131
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 58/119 (48%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YR M SI++R TG V+ +G V+ + G + R +
Sbjct: 4 RERPLSPHLQVYRWQIQMVTSILNRATGIVLTVGALVIAAALLTLMLGPDHWNCFRDHAA 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+V LF +TW+ H+ GG+R+++ D + M +++I S + VW
Sbjct: 64 SWYGQVFLFGWTWSFAFHLFGGLRHMLQDFGQGYAVRSFVGMGWLSVILSFVLTGAVWA 122
>gi|85544667|pdb|2FBW|C Chain C, Avian Respiratory Complex Ii With Carboxin Bound
gi|85544671|pdb|2FBW|P Chain P, Avian Respiratory Complex Ii With Carboxin Bound
gi|304445606|pdb|2WQY|C Chain C, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
gi|304445610|pdb|2WQY|P Chain P, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
Length = 141
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ K++RPLSPH+ IY+ M +SI HR TG + LG + V H ++ +
Sbjct: 15 KNTKSSRPLSPHISIYKWSLPMAMSITHRGTGVALSLGVSLFSVAALLLPEQFPHYVAVV 74
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ + F + + +H GIR+L+WD+ Q + +I ++L+
Sbjct: 75 KSLSLSPALIYSAKFALVFPLSYHTWNGIRHLVWDMGKGFKLSQVEQSGVVVLILTLLSS 134
Query: 120 LIVWIIK 126
+ I
Sbjct: 135 AGIAAIS 141
>gi|225717282|gb|ACO14487.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Esox lucius]
Length = 173
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTP-VVVFWFFCIANGEHTLSSL 60
+ K NRP+SPH+ +Y+ M +SI HR TG + G + + + L +
Sbjct: 44 KNNKLNRPMSPHVTVYKWSVPMMMSISHRGTGLGLSAGVSAFALLALVLPGSYPYYLDLI 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
G + + F + + +H GIR+L WD I+ ++LT
Sbjct: 104 HSQSFGPALIGLAKFGIAFPLSYHTFNGIRHLCWDSGKGFKIPEVYGSGYTVIVLTVLTT 163
Query: 120 LI 121
+
Sbjct: 164 IA 165
>gi|319786900|ref|YP_004146375.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudoxanthomonas
suwonensis 11-1]
gi|317465412|gb|ADV27144.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudoxanthomonas
suwonensis 11-1]
Length = 130
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 58/122 (47%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
RPLSPHLQ+YR M SI+HR TG V+ G V+ + G + + +
Sbjct: 3 SRERPLSPHLQVYRWQVQMVTSILHRATGIVLAGGALVLAGGLLALMVGPESWACFTGHA 62
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+V L +TWA +H+ GIR++ D + + + ++I S++ IVW
Sbjct: 63 GAWYGKVFLLGWTWAFAYHLCNGIRHVAQDFAHGYAIPDFVRNSWLSIAGSLVITAIVWA 122
Query: 125 IK 126
+
Sbjct: 123 LA 124
>gi|301786725|ref|XP_002928776.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like isoform 1 [Ailuropoda melanoleuca]
Length = 169
Score = 120 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ NRPLSPH+ IY M +SI HR TG + G + + N E L +
Sbjct: 44 KNTDLNRPLSPHITIYSWSLPMAMSICHRGTGVALSAGVSLFGLSALLIPGNFESHLELV 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G + F + +++H GIR+L+WD+ L Q ++ ++L+
Sbjct: 104 KSLCLGPSLIYTAKFALVFPLMYHTWNGIRHLVWDLGKGLKIPQLYQSGVAVLVLTVLSS 163
Query: 120 LIVWII 125
+ + +
Sbjct: 164 VGLAAM 169
>gi|138519774|gb|AAI35209.1| LOC496650 protein [Xenopus (Silurana) tropicalis]
Length = 164
Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ + NRPLSPH+ IY+ M +SI HR TG + G + + + L +
Sbjct: 39 KNTRLNRPLSPHITIYKWSLPMAMSISHRGTGIAMTAGVSLFGLAALVLPGDFASYLELV 98
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G + F + + +H+ GIR+L WD+ L + + +++T
Sbjct: 99 KSLSLGPALIYSAKFALAFPLTYHVWNGIRHLTWDLGKGLKIPQVYRSGVTVLALTLITT 158
Query: 120 LIVWII 125
+ +
Sbjct: 159 ATLAAM 164
>gi|289665883|ref|ZP_06487464.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
campestris pv. vasculorum NCPPB702]
gi|289669028|ref|ZP_06490103.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
campestris pv. musacearum NCPPB4381]
Length = 131
Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 57/119 (47%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YR M SI++R TG V+ +G V+ + G + R
Sbjct: 4 RERPLSPHLQVYRWQIQMVTSILNRATGIVLSVGALVIAAALLTLMLGPDHWNCFRDQTA 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+V LF +TW+ H+ GG+R+++ D + M +++I S + VW
Sbjct: 64 TWYGQVFLFGWTWSFAFHLFGGLRHMLQDFGQGYAVRSFISMGWLSVILSFVLTGAVWA 122
>gi|294624875|ref|ZP_06703532.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 11122]
gi|294665038|ref|ZP_06730345.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 10535]
gi|292600834|gb|EFF44914.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 11122]
gi|292605195|gb|EFF48539.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 10535]
Length = 131
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 57/119 (47%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YR M SI++R TG V+ +G + + G + R
Sbjct: 4 RERPLSPHLQVYRWQIQMVTSILNRATGIVLSVGALGIAAALLTLMLGPDHWNCFRDQAA 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+V LF +TW+ H+ GG+R+++ D + M ++++ S++ +W
Sbjct: 64 TWYGQVFLFGWTWSFAFHLFGGLRHMLQDFGQGYAVRSFISMGWLSVVLSLVLTAAIWA 122
>gi|209738020|gb|ACI69879.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
Length = 170
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFC-IANGEHTLSSL 60
+ K NRP+SPH+ IY+ M +SI HR TG + G N + L +
Sbjct: 44 KNNKLNRPMSPHITIYQWSVPMMMSITHRGTGVGLSGGILAFALLALVLPGNYPYYLDLI 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
G + + F + + +H L GIR+L WD + + I+ SILT
Sbjct: 104 HSLSIGPALLGLAKFGIAFPLSYHTLNGIRHLFWDSGKGFTLPEVYRSGYVVIVLSILTS 163
Query: 120 LI 121
+
Sbjct: 164 IA 165
>gi|325928377|ref|ZP_08189572.1| succinate dehydrogenase subunit C [Xanthomonas perforans 91-118]
gi|325541253|gb|EGD12800.1| succinate dehydrogenase subunit C [Xanthomonas perforans 91-118]
Length = 131
Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 58/119 (48%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YR M SI++R TG V+ +G + + G + R
Sbjct: 4 RERPLSPHLQVYRWQIQMVTSILNRATGIVLSVGALGIAAALLTLMLGPDHWNCFRDQAA 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+V LF +TW+ H+ GG+R+++ D + M ++++ S++ + +W
Sbjct: 64 TWYGQVFLFGWTWSFAFHLFGGLRHMLQDFGQGYAVRSFISMGWLSVVLSLVLTIAIWA 122
>gi|58581933|ref|YP_200949.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas oryzae
pv. oryzae KACC10331]
gi|84623845|ref|YP_451217.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas oryzae
pv. oryzae MAFF 311018]
gi|50313515|gb|AAT74619.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas oryzae
pv. oryzae]
gi|58426527|gb|AAW75564.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas oryzae
pv. oryzae KACC10331]
gi|84367785|dbj|BAE68943.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas oryzae
pv. oryzae MAFF 311018]
Length = 131
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 58/119 (48%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YR M SI++R TG V+ +G V+ + G + R +
Sbjct: 4 RERPLSPHLQVYRWQIQMVTSILNRATGIVLTVGALVIAAALLTLMLGPDHWNCFRDHAA 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+V LF +TW+ H+ GG+R+++ D + M ++++ S + VW
Sbjct: 64 SWYGQVFLFGWTWSFAFHLFGGLRHMLQDFGQGYAVRSFVGMGWLSVLLSFVLTGAVWA 122
>gi|281352142|gb|EFB27726.1| hypothetical protein PANDA_018826 [Ailuropoda melanoleuca]
Length = 144
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ NRPLSPH+ IY M +SI HR TG + G + + N E L +
Sbjct: 19 KNTDLNRPLSPHITIYSWSLPMAMSICHRGTGVALSAGVSLFGLSALLIPGNFESHLELV 78
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G + F + +++H GIR+L+WD+ L Q ++ ++L+
Sbjct: 79 KSLCLGPSLIYTAKFALVFPLMYHTWNGIRHLVWDLGKGLKIPQLYQSGVAVLVLTVLSS 138
Query: 120 LIVWII 125
+ + +
Sbjct: 139 VGLAAM 144
>gi|209731756|gb|ACI66747.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
Length = 170
Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTP-VVVFWFFCIANGEHTLSSL 60
+ K NRP+SPH+ +Y+ M +SI HR TG + G + N + L +
Sbjct: 44 KNNKLNRPMSPHITVYQRSVPMMMSITHRGTGVGLSGGISAFALLALVLPGNYPYYLDLI 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
G + + F + + +H L GIR+L WD + + I+ SILT
Sbjct: 104 HSLSIGPALLGLAKFGIAFPLSYHTLNGIRHLFWDSGKGFTLPEVYRSGYVVIVLSILTS 163
Query: 120 LI 121
+
Sbjct: 164 IA 165
>gi|148554233|ref|YP_001261815.1| succinate dehydrogenase subunit C [Sphingomonas wittichii RW1]
gi|148499423|gb|ABQ67677.1| succinate dehydrogenase subunit C [Sphingomonas wittichii RW1]
Length = 135
Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVY-LGTPVVVFWFFCIANGEHTLSSLRCY 63
RPLSPHL I++ P M VSI+HR TG + + V+W A+G ++
Sbjct: 4 NPGRPLSPHLTIWKWGPHMAVSILHRATGVGLAIVAGLAFVWWLVAAASGPDAYATFYKV 63
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ TW+ H+ G+R+ + D+ + KI + ++ S+L L++W
Sbjct: 64 ATSWFGYLVAIGLTWSFFQHLFSGLRHFVLDIGAGYELKINKTGSIATMVGSVLVTLLIW 123
Query: 124 I 124
+
Sbjct: 124 V 124
>gi|56611131|gb|AAH87773.1| LOC496650 protein [Xenopus (Silurana) tropicalis]
Length = 167
Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ + NRPLSPH+ IY+ M +SI HR TG + G + + + L +
Sbjct: 42 KNTRLNRPLSPHITIYKWSLPMAMSISHRGTGIAMTAGVSLFGLAALVLPGDFASYLELV 101
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G + F + + +H+ GIR+L WD+ L + + +++T
Sbjct: 102 KSLSLGPALIYSAKFALAFPLTYHVWNGIRHLTWDLGKGLKIPQVYRSGVTVLALTLITT 161
Query: 120 LIVWII 125
+ +
Sbjct: 162 ATLAAM 167
>gi|308323411|gb|ADO28842.1| mitochondrial succinate dehydrogenase cytochrome b560 subunit
[Ictalurus punctatus]
Length = 166
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTP-VVVFWFFCIANGEHTLSSL 60
+ + NRPLSPH+ IYR M +SI HR TG V+ G + + L +
Sbjct: 41 KNSRLNRPLSPHITIYRWSVPMMMSITHRGTGVVLSAGISAFAAAALVLPGSFPYYLDLV 100
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G + F ++ V +H GIR+L+WDV I I SI T
Sbjct: 101 HSFSMGPALITTAKFALSFPVAYHTYNGIRHLMWDVGKGFKIPEVYHSGYIVIALSIFTS 160
Query: 120 LIV 122
+ +
Sbjct: 161 VAL 163
>gi|218847754|ref|NP_001136371.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa [Xenopus (Silurana) tropicalis]
gi|163915714|gb|AAI57547.1| LOC496650 protein [Xenopus (Silurana) tropicalis]
Length = 169
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ + NRPLSPH+ IY+ M +SI HR TG + G + + + L +
Sbjct: 44 KNTRLNRPLSPHITIYKWSLPMAMSISHRGTGIAMTAGVSLFGLAALVLPGDFASYLELV 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G + F + + +H+ GIR+L WD+ L + + +++T
Sbjct: 104 KSLSLGPALIYSAKFALAFPLTYHVWNGIRHLTWDLGKGLKIPQVYRSGVTVLALTLITT 163
Query: 120 LIVWII 125
+ +
Sbjct: 164 ATLAAM 169
>gi|126734839|ref|ZP_01750585.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter sp.
CCS2]
gi|126715394|gb|EBA12259.1| succinate dehydrogenase, cytochrome b556 subunit [Roseobacter sp.
CCS2]
Length = 127
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 67/121 (55%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ NRPLSPHL IYR T SI+ RITG+ + + ++V+WF A G ++ ++
Sbjct: 6 RGNRPLSPHLTIYRPQWTSMSSILVRITGNALIVAALMIVWWFVAAAAGPDAFATANGFV 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
++ + L + +H+LGG+R+L+WD LD + A++ ++ S+L + +
Sbjct: 66 TSWFGDLIMTLSVLGLWYHLLGGLRHLVWDSGRMLDVDKSELAAQMMVVLSVLLTIFTIV 125
Query: 125 I 125
+
Sbjct: 126 V 126
>gi|119472931|ref|ZP_01614804.1| putative succinate dehydrogenase, hydrophobic subunit, cytochrome
b556 with sdhD [Alteromonadales bacterium TW-7]
gi|119444649|gb|EAW25958.1| putative succinate dehydrogenase, hydrophobic subunit, cytochrome
b556 with sdhD [Alteromonadales bacterium TW-7]
Length = 153
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ L + T SI HR+TG ++ V++ + + + ++
Sbjct: 28 TVKKQRPVNLDLTTISMPATAKASIFHRVTGVALFFALTFVIWAWSESLSSAESFEFVKG 87
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI- 121
+G + + + + +H++GGIR+++ D+ + + AKI + ++ ++
Sbjct: 88 LFNGFIAKFIAWGTISVLGYHLIGGIRHMVMDMGHWEELESGNLSAKIAMALGVVFAVLA 147
Query: 122 -VWI 124
VWI
Sbjct: 148 GVWI 151
>gi|70997878|ref|XP_753671.1| succinate dehydrogenase cytochrome b560 subunit [Aspergillus
fumigatus Af293]
gi|66851307|gb|EAL91633.1| succinate dehydrogenase cytochrome b560 subunit [Aspergillus
fumigatus Af293]
gi|159126596|gb|EDP51712.1| succinate dehydrogenase cytochrome b560 subunit [Aspergillus
fumigatus A1163]
Length = 208
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 58/130 (44%), Gaps = 5/130 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV-----YLGTPVVVFWFFCIANGEH 55
++ + NRP+SPHL IYR T S HRITG + T + F
Sbjct: 79 LAQQRLNRPVSPHLSIYRPQITWIGSSAHRITGIALSGSLYLFATAYLAAPLFGWHLESA 138
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
++++ + + + + ++H L G+R+L+WD+ + + + + +
Sbjct: 139 SIAAAFGALPIAAKVLIKGTAAFPFVYHCLNGVRHLVWDLGRGISNQQVIKSGWTVVGLT 198
Query: 116 ILTVLIVWII 125
+++ L + ++
Sbjct: 199 VVSALTLALL 208
>gi|110590576|pdb|2H88|C Chain C, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
gi|110590580|pdb|2H88|P Chain P, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
gi|110590584|pdb|2H89|C Chain C, Avian Respiratory Complex Ii With Malonate Bound
Length = 140
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA-NGEHTLSSL 60
+ K++RPLSPH+ IY+ M +SI HR TG + LG + + H ++ +
Sbjct: 15 KNTKSSRPLSPHISIYKWSLPMAMSITHRGTGVALSLGVSLFSLAALLLPEQFPHYVAVV 74
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ + F + + +H GIR+L+WD+ Q + +I ++L+
Sbjct: 75 KSLSLSPALIYSAKFALVFPLSYHTWNGIRHLVWDMGKGFKLSQVEQSGVVVLILTLLSS 134
Query: 120 LIV 122
+
Sbjct: 135 AAI 137
>gi|21231576|ref|NP_637493.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|66768302|ref|YP_243064.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
campestris pv. campestris str. 8004]
gi|188991441|ref|YP_001903451.1| succinate dehydrogenase (ubiquinone) cytochrome b556 subunit
[Xanthomonas campestris pv. campestris str. B100]
gi|21113263|gb|AAM41417.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|66573634|gb|AAY49044.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
campestris pv. campestris str. 8004]
gi|167733201|emb|CAP51399.1| succinate dehydrogenase (ubiquinone) cytochrome b556 subunit
[Xanthomonas campestris pv. campestris]
Length = 131
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 56/120 (46%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
RPLSPHLQ+YR M SI++R TG V+ +G V+ + G + R
Sbjct: 3 TRERPLSPHLQVYRWQIQMVTSILNRATGIVLSIGALVIAAALLTLMLGPDHWNCFRDMA 62
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+V LF +TW H+ GG+R+++ D + + +++I S + +W
Sbjct: 63 AAWYGQVFLFGWTWCFAFHLFGGLRHILQDFGQGYAVRSFVSIGWLSVILSFVLTAAIWA 122
>gi|169153946|emb|CAQ14311.1| succinate dehydrogenase complex, subunit C, integral membrane
protein [Danio rerio]
Length = 167
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTP-VVVFWFFCIANGEHTLSSL 60
+ + NRP+SPH+ IY+ M +SI HR TG + G + + + L +
Sbjct: 42 KNTRLNRPMSPHMTIYKWSVPMAMSISHRGTGIALSSGISAFALAALVLPESYPYYLDLI 101
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
G F + V++H GIR+L WD + + + ++LT
Sbjct: 102 HSLTFGPQFLAFSKFALAFPVVYHTYNGIRHLAWDAGKGFKIPEVYRSGYVVLGLTVLTS 161
Query: 120 LIVWII 125
+ + +
Sbjct: 162 IGLAAM 167
>gi|312375419|gb|EFR22798.1| hypothetical protein AND_14194 [Anopheles darlingi]
Length = 192
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 44/117 (37%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ + RP SPHL IY T +SI HR TG + + + + ++
Sbjct: 56 NARLKRPQSPHLTIYSFQLTSTLSITHRFTGLALTGYITALGLGALVMPHDATHYLTMLE 115
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ F+ + +H + G+R+L WD+ L K + S +
Sbjct: 116 GLSAPTLIALKFMLAYPFAYHTVNGVRHLFWDMGKFLTIKEVYTTGYTMLGVSGVLA 172
>gi|169153945|emb|CAQ14310.1| succinate dehydrogenase complex, subunit C, integral membrane
protein [Danio rerio]
Length = 169
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTP-VVVFWFFCIANGEHTLSSL 60
+ + NRP+SPH+ IY+ M +SI HR TG + G + + + L +
Sbjct: 44 KNTRLNRPMSPHMTIYKWSVPMAMSISHRGTGIALSSGISAFALAALVLPESYPYYLDLI 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
G F + V++H GIR+L WD + + + ++LT
Sbjct: 104 HSLTFGPQFLAFSKFALAFPVVYHTYNGIRHLAWDAGKGFKIPEVYRSGYVVLGLTVLTS 163
Query: 120 LIVWII 125
+ + +
Sbjct: 164 IGLAAM 169
>gi|119183341|ref|XP_001242721.1| hypothetical protein CIMG_06617 [Coccidioides immitis RS]
Length = 305
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVV-FWFFCIANGEHTLSS 59
++ + NRP+SPHL IYR + ++S ++RITGSV+ G V + A G H S+
Sbjct: 176 LAQQRLNRPVSPHLTIYRPQISWYLSALNRITGSVLSGGLYVFATAYLVAPAIGWHLESA 235
Query: 60 LRCYMDGSVFEVCLF----LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
G++ F H + G+R+LIWD+ L K + S
Sbjct: 236 SLAAAFGALPLAAKFAIKLGVAMPFTFHCMNGVRHLIWDLGKKLSNKEVIATGWTVVGLS 295
Query: 116 ILTVLIVWII 125
+ + + +I
Sbjct: 296 MASAFALALI 305
>gi|221220958|gb|ACM09140.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
Length = 186
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 52/116 (44%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K NRP+SPHL IY++ +S HR TG + + + V F N L ++R
Sbjct: 51 KNVKLNRPVSPHLSIYKMELPPLLSGSHRTTGFIFTVMSVSVATMSFLPWNWATILETMR 110
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASIL 117
Y+ F V +H GIR+L+WD+ + + I ++L
Sbjct: 111 YYVPYPPIVFAKFGCVAGVSYHFFNGIRHLVWDLGYGFKMPTLYKTGYLVIALALL 166
>gi|148251845|ref|YP_001236430.1| succinate dehydrogenase subunit C [Bradyrhizobium sp. BTAi1]
gi|146404018|gb|ABQ32524.1| succinate dehydrogenase subunit C [Bradyrhizobium sp. BTAi1]
Length = 111
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 58/107 (54%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M +SIVHR TG +Y GT ++ +W A+G S ++ +M + + +F YTWA++H
Sbjct: 1 MILSIVHRATGVALYFGTLLLAWWLIAAASGPSAYSYVQGFMGSFLGRLIMFGYTWALLH 60
Query: 83 HMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDIV 129
H+L GIR+ +WD+ + +I I ++VWI+ V
Sbjct: 61 HLLSGIRHFVWDLGYGFKPNERETLTWGALIGGITLTVLVWIVAYAV 107
>gi|294676288|ref|YP_003576903.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacter
capsulatus SB 1003]
gi|294475108|gb|ADE84496.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacter
capsulatus SB 1003]
Length = 132
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 5 KNNRPLSPHL--QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ RPLSP + YR T SI+ RITG+ + G + +W + +
Sbjct: 6 RVERPLSPFMIGPYYRPQMTSMSSILTRITGNALIAGFLLGAWWLIAAVSSPGYFGFVNW 65
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ + + WA+ +H L G+R+L+WD LD + A ++ II S
Sbjct: 66 IVTSWLGWLIFAGMAWAMWYHYLTGLRHLLWDTGKGLDIETAEKLGWGAIIGS 118
>gi|224824513|ref|ZP_03697620.1| succinate dehydrogenase, cytochrome b556 subunit [Lutiella
nitroferrum 2002]
gi|224603006|gb|EEG09182.1| succinate dehydrogenase, cytochrome b556 subunit [Lutiella
nitroferrum 2002]
Length = 124
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 58/122 (47%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
++ RP L RL VSI+HRI+G ++ P++++ + + R
Sbjct: 1 MQKQRPKHLDLAKIRLPIPGIVSILHRISGVALFFSLPLLIYLLHGTLSSAEAFDAYRAV 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + ++ L WA +HH GIR+L DV L+ + A AK I+ S+ +I+
Sbjct: 61 VSHPLMKLVLIGLLWAFMHHFCAGIRFLFLDVHKGLELQTARATAKSVIVISLALTVILG 120
Query: 124 II 125
++
Sbjct: 121 VV 122
>gi|28869397|ref|NP_792016.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. tomato str. DC3000]
gi|28852638|gb|AAO55711.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. tomato str. DC3000]
gi|330875700|gb|EGH09849.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. morsprunorum str. M302280PT]
gi|331018601|gb|EGH98657.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. lachrymans str. M302278PT]
Length = 124
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L+ +L T + SI+HRI+G ++++G ++++ E ++
Sbjct: 1 MNSQRPVNLDLRTIKLPVTAYTSILHRISGVILFVGIAIMLYAMDKSLASEEGFGEVKAC 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
+ + ++ ++ A+++HM+ GIR+LI D + + +KI I S++ +L+
Sbjct: 61 LTSPLAKLIIWGLLSALLYHMVAGIRHLIMDTGVGETLEGGKLGSKIVIAVSVVLILLAG 120
Query: 122 VWI 124
VWI
Sbjct: 121 VWI 123
>gi|225713228|gb|ACO12460.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Lepeophtheirus salmonis]
Length = 173
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVY-LGTPVVVFWFFCIANGEHTLSSL 60
+ + NRPLSPHL IY+ T +SI HR TG + + + F +N L SL
Sbjct: 51 KNKRLNRPLSPHLTIYKPQLTSMLSITHRGTGIFLTGVVYAGGLIPFLLPSNFPTFLQSL 110
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ S+ + F + H GIR+L WD+ + L + + + +++T +
Sbjct: 111 E--VAPSLILLFKFGIAFPFAFHSWNGIRHLFWDMGIGLKIREVYSSGSLVVALALVTSV 168
Query: 121 IVWII 125
I+ ++
Sbjct: 169 ILTVL 173
>gi|290560974|gb|ADD37889.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
[Lepeophtheirus salmonis]
Length = 173
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVY-LGTPVVVFWFFCIANGEHTLSSL 60
+ + NRPLSPHL IY+ T +SI HR TG + + + F +N L SL
Sbjct: 51 KNKRLNRPLSPHLTIYKPQLTSMLSITHRGTGIFLTGVVYAGGLIPFLLPSNFPTFLQSL 110
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ S+ + F + H GIR+L WD+ + L + + + +++T +
Sbjct: 111 E--VAPSLILLFKFGIAFPFAFHSWNGIRHLFWDMGIGLKIREVYSSGSLVVALALVTSV 168
Query: 121 IVWII 125
I+ ++
Sbjct: 169 ILTVL 173
>gi|149911925|ref|ZP_01900524.1| succinate dehydrogenase, cytochrome b556 subunit [Moritella sp.
PE36]
gi|149805018|gb|EDM65046.1| succinate dehydrogenase, cytochrome b556 subunit [Moritella sp.
PE36]
Length = 128
Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 61/122 (50%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ + T SI+HRI+G ++ ++++ + E + +
Sbjct: 5 VKKQRPVNLDLQTIDMPITAIASILHRISGVIMLFAVGILLWLLAESLSSEQGFQNAQEI 64
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ G L+ A+ +H+ GGIR+L+ D+ + + AK++ +A+++ ++
Sbjct: 65 VSGFFGTFILWGILTALAYHIAGGIRHLLMDMGYFEELESGALSAKVSFVATVVLSILAG 124
Query: 124 II 125
I+
Sbjct: 125 IM 126
>gi|213968188|ref|ZP_03396333.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. tomato T1]
gi|301383807|ref|ZP_07232225.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. tomato Max13]
gi|302059585|ref|ZP_07251126.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. tomato K40]
gi|302133374|ref|ZP_07259364.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. tomato NCPPB 1108]
gi|213927168|gb|EEB60718.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. tomato T1]
Length = 124
Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L+ +L T + SI+HR++G ++++G ++++ E ++
Sbjct: 1 MNSQRPVNLDLRTIKLPVTAYTSILHRVSGVILFVGIAIMLYAMDKSLASEEGFGEVKAC 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
+ + ++ ++ A+++HM+ GIR+LI D + + +KI I S++ +L+
Sbjct: 61 LTSPLAKLIIWGLLSALLYHMVAGIRHLIMDTGVGETLEGGKLGSKIVIAVSVVLILLAG 120
Query: 122 VWI 124
VWI
Sbjct: 121 VWI 123
>gi|85544002|pdb|1YQ3|C Chain C, Avian Respiratory Complex Ii With Oxaloacetate And
Ubiquinone
gi|85544006|pdb|1YQ4|C Chain C, Avian Respiratory Complex Ii With 3-Nitropropionate And
Ubiquinone
Length = 141
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA-NGEHTLSSL 60
+ K++RPLSPH+ IY+ M +SI HR TG + LG + + H ++ +
Sbjct: 15 KNTKSSRPLSPHISIYKWSLPMAMSITHRGTGVALSLGVSLFSLAALLLPEQFPHYVAVV 74
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ + F + + +H GIR+L+WD+ Q + +I ++L+
Sbjct: 75 KSLSLSPALIYSAKFALVFPLSYHTWNGIRHLVWDMGKGFKLSQVEQSGVVVLILTLLSS 134
Query: 120 LIVWIIK 126
+ I
Sbjct: 135 AGIAAIS 141
>gi|330862922|emb|CBX73057.1| succinate dehydrogenase cytochrome b556 subunit [Yersinia
enterocolitica W22703]
Length = 143
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 17 KTVKKQRPVNLDLQTIRFPVTAIASILHRVSGVMTFVAVGILLWLLGLSVSSQEGFMQAA 76
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASILTVL 120
M+ + + A+ +H+ GGIR+L+ D + T+ A++ ++ +++ +
Sbjct: 77 AVMNSFFVKFIFWGILTALAYHVCGGIRHLLMDFGYVEESLAAGTRSAQVVMVLTLVLSV 136
Query: 121 IVWII 125
+ ++
Sbjct: 137 LAGVL 141
>gi|295096572|emb|CBK85662.1| succinate dehydrogenase subunit C [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 159
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ L+ R T SI+HR++G + ++ ++++ +
Sbjct: 34 NVKKQRPVNLDLKTIRFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFLQASA 93
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-----KKIATQMAKINIIASIL 117
M+ + ++ A+ +H++GG+R+++ D + K+ A I ++ S+L
Sbjct: 94 IMNSFFVKFIMWGILTALAYHVVGGVRHMLMDFGYLEETFEAGKRTANISFVITVVLSLL 153
Query: 118 TVLIVW 123
++VW
Sbjct: 154 AGVLVW 159
>gi|307295105|ref|ZP_07574947.1| succinate dehydrogenase, cytochrome b556 subunit [Sphingobium
chlorophenolicum L-1]
gi|306879579|gb|EFN10797.1| succinate dehydrogenase, cytochrome b556 subunit [Sphingobium
chlorophenolicum L-1]
Length = 131
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVY-LGTPVVVFWFFCIANGEHTLSSLRCY 63
+RPLSPHL I++ P M VSI+HR+TG+ + G +V+W A+G ++
Sbjct: 4 TTSRPLSPHLTIWKWGPAMAVSIMHRVTGNGLATAGALGLVWWLMAAASGPEAYATFVTC 63
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + + +W H+ G+R+ + D+ + K + + + S + W
Sbjct: 64 ATSPIGYLVMAGLSWFFFQHLCSGLRHFVLDMGAGYELKNNKLWSVLTFVLSTSLTIAFW 123
Query: 124 I 124
Sbjct: 124 A 124
>gi|71737948|ref|YP_274200.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|257485479|ref|ZP_05639520.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. tabaci ATCC 11528]
gi|289624405|ref|ZP_06457359.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. aesculi str. NCPPB3681]
gi|289646681|ref|ZP_06478024.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. aesculi str. 2250]
gi|298486513|ref|ZP_07004573.1| Succinate dehydrogenase cytochrome b-556 subunit [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|71558501|gb|AAZ37712.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|298158990|gb|EFI00051.1| Succinate dehydrogenase cytochrome b-556 subunit [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|320329258|gb|EFW85255.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330880846|gb|EGH14995.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. glycinea str. race 4]
gi|331010660|gb|EGH90716.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. tabaci ATCC 11528]
Length = 124
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L+ +L T + SI+HRI+G ++++G ++++ E ++
Sbjct: 1 MNSQRPVNLDLRTIKLPVTAYTSILHRISGVILFVGIAIMLYAMDKSLASEEGFGEVKAC 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
+ + ++ ++ A+++HM+ GIR+LI D + + +KI I S++ +L+
Sbjct: 61 LTSPLAKLIIWGLLSALLYHMVAGIRHLIMDSGVGETLEGGKLGSKIVIAVSVVLILLAG 120
Query: 122 VWI 124
VWI
Sbjct: 121 VWI 123
>gi|149374990|ref|ZP_01892763.1| succinate dehydrogenase (C subunit) [Marinobacter algicola DG893]
gi|149360879|gb|EDM49330.1| succinate dehydrogenase (C subunit) [Marinobacter algicola DG893]
Length = 150
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
S++ + RP++ L + SI+HR++G ++++G +++ +GE S +
Sbjct: 25 SAVNSKRPVNLDLGKFHFPLPAITSILHRVSGIIIFVGVAFMLYGLQLSLSGEEGFSRVS 84
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+D + ++ + A+++H++ GI++L+ D+ + + + AK ++ S++ +L+
Sbjct: 85 DLLDSFLAKLITWGILSALLYHLVAGIKHLLMDMGIGEELESGRLAAKATVVISVILILL 144
Query: 122 --VWI 124
VW+
Sbjct: 145 AGVWV 149
>gi|119572984|gb|EAW52599.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa, isoform CRA_b [Homo sapiens]
Length = 189
Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+I +NRPLSPH+ IY M +SI HR TG + G + + N E L +
Sbjct: 64 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 123
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ G + F + +++H GIR+L+WD+ L Q
Sbjct: 124 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 172
>gi|290510449|ref|ZP_06549819.1| LOW QUALITY PROTEIN: succinate dehydrogenase, cytochrome b556
subunit [Klebsiella sp. 1_1_55]
gi|289777165|gb|EFD85163.1| LOW QUALITY PROTEIN: succinate dehydrogenase, cytochrome b556
subunit [Klebsiella sp. 1_1_55]
Length = 147
Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 22 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFLTAAS 81
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLC-LDKKIATQMAKINIIASILTVLI 121
MD + ++ A+ +H++ GIR+L+ D + + AKI+ + +++ L+
Sbjct: 82 IMDSFFVKFIMWGILTALAYHVVVGIRHLMMDFGYLDETLEAGKRSAKISFVITVVLSLL 141
Query: 122 VWII 125
++
Sbjct: 142 AGVL 145
>gi|34496520|ref|NP_900735.1| succinate dehydrogenase cytochrome b-556 subunit [Chromobacterium
violaceum ATCC 12472]
gi|34102374|gb|AAQ58740.1| succinate dehydrogenase cytochrome b-556 subunit [Chromobacterium
violaceum ATCC 12472]
Length = 125
Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 59/123 (47%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
++ RP L RL FVSI+HR++G ++ P++++ + + + +
Sbjct: 1 MQKQRPKHLDLARIRLPVPGFVSILHRVSGVALFFSLPLLIYLLHGSLSSAESFDTYKAV 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + ++ L WA +HH GIR+L D+ L+ + A AK ++ S++ ++
Sbjct: 61 VSHPLMKLALLGLIWAYLHHFCAGIRFLFLDIHKGLELETARGTAKTVLVVSLVLTAVLG 120
Query: 124 IIK 126
I
Sbjct: 121 GIA 123
>gi|117618735|ref|YP_856454.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Aeromonas hydrophila subsp. hydrophila ATCC 7966]
gi|117560142|gb|ABK37090.1| succinate dehydrogenase, cytochrome b556 subunit [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
Length = 129
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 58/121 (47%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
RP++ LQ T SI+HR++G + ++ ++++ ++ M
Sbjct: 7 NKQRPVNLDLQTISFPVTAIASILHRVSGVITFVALSILLWMLGTSLASPEGFETVVSIM 66
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
D + + L+ A+ +H++GG+R+L+ D+ + + Q A++ + + + ++ +
Sbjct: 67 DNFLVKFVLWGILTALAYHIVGGLRHLVMDMGYWEELESGNQSARVAFVITAVLAVLAGV 126
Query: 125 I 125
+
Sbjct: 127 L 127
>gi|167648795|ref|YP_001686458.1| succinate dehydrogenase, cytochrome b556 subunit [Caulobacter sp.
K31]
gi|167351225|gb|ABZ73960.1| succinate dehydrogenase, cytochrome b556 subunit [Caulobacter sp.
K31]
Length = 135
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 61/120 (50%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RPLSPHLQ++R TM SI+HR +Y+G ++ W +A+G ++ +
Sbjct: 10 ERPLSPHLQVWRWHITMACSILHRGCIFALYVGVLLLAGWGLALASGPDAYAAFTGCLGS 69
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
+ ++ LF T AV+ ++ +R WD+ KIA I +++ ++VW+I
Sbjct: 70 PLGKLVLFGLTVAVLFNIAYTVRQSFWDMGKGFTPKIADMTGACAIAFAVVGAIVVWVIA 129
>gi|225713156|gb|ACO12424.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Lepeophtheirus salmonis]
Length = 173
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVY-LGTPVVVFWFFCIANGEHTLSSL 60
+ + NRPLSPHL IY+ T +SI HR TG + + + F +N L SL
Sbjct: 51 KNKRLNRPLSPHLTIYKPQLTSMLSITHRGTGIFLTGVVYAGGLIPFLLPSNFPTFLQSL 110
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ S+ + F + H GIR+L WD+ + L + + + +++T +
Sbjct: 111 E--VAPSLILLFKFGIAFPFAFHSWNGIRHLFWDMGIGLKIREVYSSGSLVVALALVTSV 168
Query: 121 IV 122
I+
Sbjct: 169 IL 170
>gi|258571015|ref|XP_002544311.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237904581|gb|EEP78982.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 204
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 5/130 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVV-FWFFCIANGEH---- 55
++ + NRP++PHL IY+ + ++S ++RITG V G + + A G H
Sbjct: 75 LAKQRLNRPVAPHLSIYKPQISWYLSALNRITGCTVSGGLYLFATAYLVAPAVGWHLESM 134
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+L++ + + F H + G+R+L+WD + K + S
Sbjct: 135 SLAAAFGALPLAAKFAIKFGVAMPFTFHCMNGVRHLVWDFGKKMTNKDVIATGWTVVGLS 194
Query: 116 ILTVLIVWII 125
+ + L + +I
Sbjct: 195 VASSLALALI 204
>gi|21242814|ref|NP_642396.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
axonopodis pv. citri str. 306]
gi|21108300|gb|AAM36932.1| succinate dehydrogenase membrane anchor subunit [Xanthomonas
axonopodis pv. citri str. 306]
gi|50981400|gb|AAT91478.1| succinate dehydrogenase subunit C [Xanthomonas citri]
Length = 131
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 57/119 (47%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YR M SI++R TG V+ +G + + G + R
Sbjct: 4 RERPLSPHLQVYRWQIQMVTSILNRATGIVLTVGALAIAAALLTLMLGPDHWNCFRAQAA 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+V LF +TW+ H+ GG+R+++ D + M ++++ S++ +W
Sbjct: 64 TWYGQVFLFGWTWSFAFHLFGGLRHMLQDFGQGYAVRSFISMGWLSVVLSLVLTAAIWA 122
>gi|325917571|ref|ZP_08179771.1| succinate dehydrogenase subunit C [Xanthomonas vesicatoria ATCC
35937]
gi|325536205|gb|EGD08001.1| succinate dehydrogenase subunit C [Xanthomonas vesicatoria ATCC
35937]
Length = 131
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 56/119 (47%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YR M SI++R TG V+ G + + G LR +
Sbjct: 4 RERPLSPHLQVYRWQIQMVTSILNRATGIVLSFGALAIAAALLTLMLGPEHWDCLRQHAA 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+V LF +TW H+ GG+R+++ D + + ++++ S++ +W
Sbjct: 64 AWYGQVFLFGWTWCFAFHLFGGLRHIMQDFGQGYAVRSFVSLGWLSVVLSLVLTAAIWA 122
>gi|330811091|ref|YP_004355553.1| succinate dehydrogenase (succinate dehydrogenase cytochrome b556
subunit) [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327379199|gb|AEA70549.1| Succinate dehydrogenase (Succinate dehydrogenase cytochrome b556
subunit) [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 124
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K+ RP++ L+ +L T + SI+HRI+G ++++ ++++ + E ++
Sbjct: 1 MKSQRPVNLDLRTIKLPVTAYTSILHRISGVILFVSLAIMLYALDKSLDSEEGFGQVKAC 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
+ + ++ ++ A+++H++ G+R+LI D+ + + +KI I S + +++
Sbjct: 61 LTSPLAKLVIWGILSALLYHLVAGVRHLIMDMGIGETLEGGKLGSKIIIAVSAVLIVLAG 120
Query: 122 VWI 124
VWI
Sbjct: 121 VWI 123
>gi|195038233|ref|XP_001990564.1| GH19420 [Drosophila grimshawi]
gi|193894760|gb|EDV93626.1| GH19420 [Drosophila grimshawi]
Length = 171
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT-PVVVFWFFCIANGEHTLSSL 60
+ + R +SPHL IY+ T +SI+HR TG + +G + + + H ++ +
Sbjct: 46 KNERLGREMSPHLTIYKPQLTSMLSIMHRGTGLALGMGVWGLGLGALIASQDISHYVTMV 105
Query: 61 RCY-MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G+ F+ + V +H GIR+L+WD L K + AS +
Sbjct: 106 EGLQLSGATLTAIKFIIAYPVGYHSANGIRHLLWDTGRFLKIKEVYSTGYAMVAASFVLT 165
Query: 120 LIVWII 125
I+ ++
Sbjct: 166 AILALL 171
>gi|157120010|ref|XP_001653486.1| succinate dehydrogenase [Aedes aegypti]
gi|94468558|gb|ABF18128.1| mitochondrial succinate dehydrogenase cytochrome b subunit [Aedes
aegypti]
gi|108875100|gb|EAT39325.1| succinate dehydrogenase [Aedes aegypti]
Length = 171
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 46/120 (38%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ + RP SPHL IY T +SI HR+TG + ++ + + ++
Sbjct: 49 NARLQRPQSPHLTIYAPQLTSMLSITHRMTGMALAGYATMMGLGALALPHDATHYLTMLE 108
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ F + H + G+R+L WD+ L K ++ S + +
Sbjct: 109 GLSAPTLMALKFTLAYPFAFHSVNGVRHLFWDMGKFLTIKEVYSTGYTMLLVSGVVAAAL 168
>gi|66045245|ref|YP_235086.1| succinate dehydrogenase, cytochrome b subunit [Pseudomonas syringae
pv. syringae B728a]
gi|63255952|gb|AAY37048.1| Succinate dehydrogenase, cytochrome b subunit [Pseudomonas syringae
pv. syringae B728a]
Length = 124
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L+ +L T + SI+HRI+G ++++G ++++ E ++ Y
Sbjct: 1 MNSQRPVNLDLRTIKLPVTAYTSILHRISGVILFVGIAIMLYAMDKSLASEEGFGEVKAY 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
M + ++ ++ A+++H++ GIR+LI D + + +KI I S++ +L+
Sbjct: 61 MTSPLAKLIIWGLLSALLYHLVAGIRHLIMDSGVGETLEGGKLGSKIVIAVSVILILLAG 120
Query: 122 VWI 124
VWI
Sbjct: 121 VWI 123
>gi|257093959|ref|YP_003167600.1| succinate dehydrogenase, cytochrome b556 subunit [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257046483|gb|ACV35671.1| succinate dehydrogenase, cytochrome b556 subunit [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 130
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 62/120 (51%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+IK RP + L RL +SI+HR++G+ ++L PV+++ F T ++++
Sbjct: 5 AIKKRRPKNLDLPTIRLPLPGILSILHRVSGAGLFLMLPVLLWLFQGSLASSETFAAVKG 64
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ V ++ L W +HH GIRYL+ D+ ++ + A +KI SI LI+
Sbjct: 65 VVGHPVAKIVLLGLIWFYMHHFCAGIRYLLLDLHKGIELEAARLSSKIVFAVSIALTLII 124
>gi|145299317|ref|YP_001142158.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Aeromonas salmonicida subsp. salmonicida A449]
gi|142852089|gb|ABO90410.1| succinate dehydrogenase cytochrome b556 subunit [Aeromonas
salmonicida subsp. salmonicida A449]
Length = 129
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 58/121 (47%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
RP++ LQ T SI+HR++G + ++ ++++ ++ M
Sbjct: 7 NKQRPVNLDLQTISFPVTAIASILHRVSGVITFVALSILLWMLGTSLASPEGFETVVSIM 66
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
D + + L+ A+ +H++GG+R+L+ D+ + + Q A++ + + + ++ +
Sbjct: 67 DNFLVKFVLWGILTALAYHIVGGLRHLVMDMGYWEELESGNQSARVAFVITAILAVLAGV 126
Query: 125 I 125
+
Sbjct: 127 L 127
>gi|46201871|ref|ZP_00054198.2| COG2009: Succinate dehydrogenase/fumarate reductase, cytochrome b
subunit [Magnetospirillum magnetotacticum MS-1]
Length = 109
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 54/108 (50%)
Query: 19 LIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTW 78
+ T +SI HRITG + +GT V+ +W A G + + + ++ LF +T
Sbjct: 1 MPFTAILSISHRITGVALAVGTIVLAYWLASAAYGPVAYGHAQAVLGSVLGKLVLFGWTA 60
Query: 79 AVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
A+ +H+ GIR+L WD + A + ++ + A+ L ++ W+
Sbjct: 61 ALFYHLCNGIRHLFWDKGRGYEIAEADKSGRMVVGAAALLTVLAWVFG 108
>gi|53850596|ref|NP_001005534.1| succinate dehydrogenase complex, subunit C [Rattus norvegicus]
gi|51980592|gb|AAH82027.1| Succinate dehydrogenase complex, subunit C, integral membrane
protein [Rattus norvegicus]
gi|149040638|gb|EDL94595.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, isoform CRA_b [Rattus norvegicus]
Length = 169
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ +NRP+SPHL IYR M +S+ HR +G + G + + N E L +
Sbjct: 44 KNTSSNRPVSPHLTIYRWSLPMAMSVCHRGSGIAMSGGVSLFGLSALLLPGNFESYLMLV 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G + F+ + +++H L G+R+L+WD+ L ++ ++L+
Sbjct: 104 KSLCLGPALIHAAKFVLVFPLMYHSLNGVRHLMWDLGKGLSISQVQLSGVTVLVLAVLSS 163
Query: 120 LIVWII 125
+ I
Sbjct: 164 AGLAAI 169
>gi|119479383|ref|XP_001259720.1| succinate dehydrogenase cytochrome b560 subunit [Neosartorya
fischeri NRRL 181]
gi|119407874|gb|EAW17823.1| succinate dehydrogenase cytochrome b560 subunit [Neosartorya
fischeri NRRL 181]
Length = 188
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 57/130 (43%), Gaps = 5/130 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV-----YLGTPVVVFWFFCIANGEH 55
++ + NRP+SPHL IYR T S HRITG + T + F
Sbjct: 59 LAQQRLNRPVSPHLSIYRPQITWIGSSAHRITGIALSGSLYLFATAYLAAPLFGWHLESA 118
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
++++ + + + ++H L G+R+L+WD+ + + + + +
Sbjct: 119 SIAAAFGALPIAAKVFIKGTAAFPFVYHCLNGVRHLVWDLGRGISNQQVIKSGWTVVGLT 178
Query: 116 ILTVLIVWII 125
+++ L + ++
Sbjct: 179 VVSALTLALL 188
>gi|85374260|ref|YP_458322.1| hypothetical protein ELI_07165 [Erythrobacter litoralis HTCC2594]
gi|84787343|gb|ABC63525.1| hypothetical protein ELI_07165 [Erythrobacter litoralis HTCC2594]
Length = 126
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYL-GTPVVVFWFFCIANGEHTLSSLRCYMD 65
NRPLSPHLQI++ P M VSI+HRITG + L G V+++W +A+G +
Sbjct: 3 NRPLSPHLQIWKWGPHMLVSILHRITGDGMALVGLGVLLWWLGALASGPEAYETFSTLAT 62
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ V L +WA H++ G+R+ + D+ + + ++ + +L + W +
Sbjct: 63 TPIGYVVLVGLSWAFFTHLMSGLRHFVLDIGAGYELDTNKMWSIVSPVLGVLLTVAFWAV 122
Query: 126 KDI 128
+
Sbjct: 123 VLL 125
>gi|330829371|ref|YP_004392323.1| succinate dehydrogenase cytochrome b556 subunit [Aeromonas veronii
B565]
gi|328804507|gb|AEB49706.1| Succinate dehydrogenase cytochrome b556 subunit [Aeromonas veronii
B565]
Length = 125
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 59/121 (48%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
RP++ LQ T SI+HR++G + ++ ++++ ++ M
Sbjct: 3 NKQRPVNLDLQTISFPVTAIASILHRVSGVITFVALGILLWMLGTSLASPEGFETVVAIM 62
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
D + ++ L+ A+ +H++GG+R+L+ D+ + + Q A++ + + + ++ +
Sbjct: 63 DNFLVKLVLWGILTALAYHIVGGLRHLVMDMGYWEELESGNQSARVAFVITAILAVLAGV 122
Query: 125 I 125
+
Sbjct: 123 L 123
>gi|239993980|ref|ZP_04714504.1| succinate dehydrogenase, cytochrome b subunit [Alteromonas
macleodii ATCC 27126]
Length = 124
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 58/121 (47%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ L + P+ SI+HR+TG ++ V++ + + + ++
Sbjct: 1 MKKQRPVNLELNTIKFPPSAISSILHRVTGVAMFFALLFVIWAWAVSVHSPEGFADVQAI 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
MDG + A+ +H+LGG+R+++ D+ + + AK I ++ +++
Sbjct: 61 MDGFFGKFVAIGTASALTYHILGGLRHVVMDLGHWEELESGNTSAKAVIALWVVLTVVLG 120
Query: 124 I 124
+
Sbjct: 121 V 121
>gi|221134277|ref|ZP_03560582.1| succinate dehydrogenase, cytochrome b subunit [Glaciecola sp.
HTCC2999]
Length = 124
Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 59/121 (48%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ L + P+ SI+HR+TG ++ V++ + E ++++
Sbjct: 1 MKKQRPVNLDLNTIKFPPSAISSILHRVTGVAMFFALLFVIWAWAVSLGSEEGFNNVQII 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
MDG + + A+ +H+LGGIR+ I D+ + + A + I ++ +I+
Sbjct: 61 MDGFLGKFVAIGTVSALTYHILGGIRHGIMDMGYWEELESGNTSANVVIGIWVVLTVILG 120
Query: 124 I 124
+
Sbjct: 121 V 121
>gi|78047797|ref|YP_363972.1| putative succinate dehydrogenase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78036227|emb|CAJ23918.1| putative succinate dehydrogenase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 131
Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 57/119 (47%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+Y M SI++R TG V+ +G + + G + R
Sbjct: 4 RERPLSPHLQVYLWQIQMVTSILNRATGIVLSVGALGIAAALLTLMLGPDHWNCFRDQAA 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+V LF +TW+ H+ GG+R+++ D + M ++++ S++ + +W
Sbjct: 64 TWYGQVFLFGWTWSFAFHLFGGLRHMLQDFGQGYAVRSFISMGWLSVVLSLVLTIAIWA 122
>gi|162147201|ref|YP_001601662.1| succinate dehydrogenase cytochrome b556 subunit [Gluconacetobacter
diazotrophicus PAl 5]
gi|161785778|emb|CAP55349.1| putative Succinate dehydrogenase cytochrome b556 subunit
[Gluconacetobacter diazotrophicus PAl 5]
Length = 153
Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 60/117 (51%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RP+SPHLQ+YR +MF+SI +R G G+ + V W A G + ++
Sbjct: 19 TRRPMSPHLQVYRFRLSMFLSIANRAAGVAAAAGSVLGVCWLNAAAKGPESFKKVQKVTR 78
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ ++ L +T ++++H + G+R+L WD +KK + I + ++ T L +
Sbjct: 79 NPLGKLALVGWTLSLVYHFVAGLRHLSWDAGYRFEKKEINEDGPIAVGVTVGTTLAL 135
>gi|149040639|gb|EDL94596.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, isoform CRA_c [Rattus norvegicus]
Length = 150
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ +NRP+SPHL IYR M +S+ HR +G + G + + N E L +
Sbjct: 25 KNTSSNRPVSPHLTIYRWSLPMAMSVCHRGSGIAMSGGVSLFGLSALLLPGNFESYLMLV 84
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G + F+ + +++H L G+R+L+WD+ L ++ ++L+
Sbjct: 85 KSLCLGPALIHAAKFVLVFPLMYHSLNGVRHLMWDLGKGLSISQVQLSGVTVLVLAVLSS 144
Query: 120 LIVWII 125
+ I
Sbjct: 145 AGLAAI 150
>gi|311253955|ref|XP_003125707.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like [Sus scrofa]
Length = 169
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
++ +NRPLSPH+ IYR P++ SI HR TG V G + + N E L +
Sbjct: 44 KNLGSNRPLSPHITIYRSTPSLGTSICHRGTGVAVSCGVSLFGLSALLLPGNFESHLELV 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G + F + +++H GIR+LIWD+ L TQ + +I ++L+
Sbjct: 104 KSLCLGPTLIYTAKFGIVFPLMYHTWNGIRHLIWDLGKGLTIPQLTQSGVVVLILTVLSS 163
Query: 120 LIVWII 125
+ + +
Sbjct: 164 VGLAAM 169
>gi|297493990|gb|ADI40717.1| succinate dehydrogenase complex subunit C [Miniopterus
schreibersii]
Length = 139
Score = 115 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ +NRPLSPH+ IY M +SI HR TG + G + + N E L +
Sbjct: 28 KNTGSNRPLSPHITIYSWSLPMAMSICHRGTGVALSAGVSLFGLSALLLPGNFESHLELV 87
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN 111
+ G + F + +++H GIR+L+WD+ L Q
Sbjct: 88 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLHQSGVAV 139
>gi|146282234|ref|YP_001172387.1| succinate dehydrogenase (C subunit) [Pseudomonas stutzeri A1501]
gi|145570439|gb|ABP79545.1| succinate dehydrogenase (C subunit) [Pseudomonas stutzeri A1501]
Length = 124
Score = 115 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K+ RP++ L+ +L T + SI+HR++G ++++G +++ + +R Y
Sbjct: 1 MKSQRPVNLDLRTIKLPITAYTSILHRVSGVILFVGIALLLLALDTSLSSPEGFEEVRAY 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
+ + ++ + A+++H++ G+R+LI D + +KI I S + +++
Sbjct: 61 LGSPLAKLVSWALLSALLYHLVAGVRHLIMDSGHGETLEGGKLGSKIVIAVSAVLIVLAG 120
Query: 122 VWI 124
VWI
Sbjct: 121 VWI 123
>gi|95769404|gb|ABF57433.1| succinate dehydrogenase complex, subunit C isoform 1 precursor [Bos
taurus]
Length = 168
Score = 115 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ NRPLSPH+ IY M +SI HR TG + G + + + E L +
Sbjct: 43 KNTTLNRPLSPHISIYGWSLPMAMSICHRGTGIALSAGVSLFGLSALLVPGSFESHLEFV 102
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G + F + +++H GIR+L+WD+ L Q ++ ++L+
Sbjct: 103 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLTISQLHQSGVAVLVLTVLSS 162
Query: 120 LIVWII 125
+ + +
Sbjct: 163 VGLAAM 168
>gi|120598552|ref|YP_963126.1| succinate dehydrogenase, cytochrome subunit B [Shewanella sp.
W3-18-1]
gi|146293369|ref|YP_001183793.1| succinate dehydrogenase, cytochrome subunit B [Shewanella
putrefaciens CN-32]
gi|120558645|gb|ABM24572.1| succinate dehydrogenase subunit C [Shewanella sp. W3-18-1]
gi|145565059|gb|ABP75994.1| succinate dehydrogenase subunit C [Shewanella putrefaciens CN-32]
gi|319426671|gb|ADV54745.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
putrefaciens 200]
Length = 131
Score = 115 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 57/123 (46%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP+ LQ R T SI+HR++G ++ ++++ + +S++
Sbjct: 6 QNVKKQRPVHLDLQTIRFPATAIASILHRVSGVIMLFAVGILIWLLNSSLASAESFASVQ 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
D + + L+ A+ +H+ GG+R+L+ D + T AK + ++ ++
Sbjct: 66 SLFDNFIMKFILWGIMTALAYHLFGGLRHLVMDTGRWEELASGTASAKAVFVLTVAFSIV 125
Query: 122 VWI 124
I
Sbjct: 126 AGI 128
>gi|237653215|ref|YP_002889529.1| succinate dehydrogenase, cytochrome b556 subunit [Thauera sp. MZ1T]
gi|237624462|gb|ACR01152.1| succinate dehydrogenase, cytochrome b556 subunit [Thauera sp. MZ1T]
Length = 129
Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 61/123 (49%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ + RP L RL VSI+HRI+G ++L P +++ T +
Sbjct: 5 TARKPRPKYLALNEIRLPLPGIVSILHRISGVGIFLMLPFLLYLLDRSLGSPETFETFAA 64
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+D ++ LF WA +HH GIR+L+ D+ L+ + A + +KI +I S+ LI+
Sbjct: 65 VVDNWFIKLVLFGLLWAYLHHFCAGIRFLLLDLHKGLELEEARKSSKIVLIVSLTLTLII 124
Query: 123 WII 125
++
Sbjct: 125 GVV 127
>gi|194664933|ref|XP_001787720.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like isoform 1 [Bos taurus]
gi|297472053|ref|XP_002685667.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like isoform 1 [Bos taurus]
gi|296490234|gb|DAA32347.1| succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like
isoform 1 [Bos taurus]
Length = 169
Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ NRPLSPH+ IY M +SI HR TG + G + + + E L +
Sbjct: 44 KNTSLNRPLSPHISIYGWSLPMAMSICHRGTGIALSAGVSLFGLSALLVPGSFESHLEFV 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G + F + +++H GIR+L+WD+ L Q + ++ ++L+
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLTISQLHQSGEAVLVLTVLSS 163
Query: 120 LIVWII 125
+ + +
Sbjct: 164 VGLAAM 169
>gi|113969971|ref|YP_733764.1| succinate dehydrogenase subunit C [Shewanella sp. MR-4]
gi|114047206|ref|YP_737756.1| succinate dehydrogenase subunit C [Shewanella sp. MR-7]
gi|117920153|ref|YP_869345.1| succinate dehydrogenase subunit C [Shewanella sp. ANA-3]
gi|113884655|gb|ABI38707.1| succinate dehydrogenase subunit C [Shewanella sp. MR-4]
gi|113888648|gb|ABI42699.1| succinate dehydrogenase subunit C [Shewanella sp. MR-7]
gi|117612485|gb|ABK47939.1| succinate dehydrogenase subunit C [Shewanella sp. ANA-3]
Length = 131
Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP+ LQ R T VSI+HR++G ++ ++++ + + ++
Sbjct: 6 QNVKKQRPVHLDLQTIRFPATAIVSILHRVSGVIMLFAVGILIWLLNSSLASAESFAGVQ 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
D V + ++ A+ +H+ GG+R+L+ D + T AK + ++ ++
Sbjct: 66 SLFDNFVVKFIMWGILTALAYHLFGGLRHLVMDTGRWEELASGTASAKAVFVLTVAFSIL 125
Query: 122 --VWI 124
+W+
Sbjct: 126 AGLWV 130
>gi|307822158|ref|ZP_07652390.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacter
tundripaludum SV96]
gi|307736724|gb|EFO07569.1| succinate dehydrogenase, cytochrome b556 subunit [Methylobacter
tundripaludum SV96]
Length = 129
Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 69/122 (56%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+I NRP SPHLQ+Y+L T +SI HR+TG ++ G + V+ +A G + ++++
Sbjct: 2 AINTNRPTSPHLQVYKLPLTGIISITHRMTGIMLTAGLILFVYVISALAGGADSYTAMQA 61
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
M +F++ ++ + +A+ H+ G+R+LIWD + + A I + AS+ L+
Sbjct: 62 LMSLWLFKLVIWAFIYALFFHLCHGVRHLIWDSGSSFELDTLNRYAMIELAASLALTLMT 121
Query: 123 WI 124
+
Sbjct: 122 FA 123
>gi|28461247|ref|NP_787008.1| succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Bos taurus]
gi|1705529|sp|P35720|C560_BOVIN RecName: Full=Succinate dehydrogenase cytochrome b560 subunit,
mitochondrial; AltName: Full=Integral membrane protein
CII-3; AltName: Full=QPs-1; Short=QPs1; AltName:
Full=Succinate dehydrogenase complex subunit C; Flags:
Precursor
gi|786511|gb|AAB32390.1| succinate-ubiquinone oxidoreductase complex II membrane-intrinsic
subunit [Bos taurus]
gi|74267618|gb|AAI02063.1| Succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa [Bos taurus]
gi|296489839|gb|DAA31952.1| succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Bos taurus]
gi|1092498|prf||2024211A succinate ubiquinone oxidoreductase
Length = 169
Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ NRPLSPH+ IY M +SI HR TG + G + + + E L +
Sbjct: 44 KNTTLNRPLSPHISIYGWSLPMAMSICHRGTGIALSAGVSLFGLSALLVPGSFESHLEFV 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G + F + +++H GIR+L+WD+ L Q ++ ++L+
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLTISQLHQSGVAVLVLTVLSS 163
Query: 120 LIVWII 125
+ + +
Sbjct: 164 VGLAAM 169
>gi|254448802|ref|ZP_05062259.1| succinate dehydrogenase, cytochrome b556 subunit [gamma
proteobacterium HTCC5015]
gi|198261643|gb|EDY85931.1| succinate dehydrogenase, cytochrome b556 subunit [gamma
proteobacterium HTCC5015]
Length = 119
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 55/104 (52%)
Query: 10 LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVF 69
+SPHLQ+YRL ++SI+HR TG + + ++ +G L+ ++
Sbjct: 1 MSPHLQVYRLPMLAWLSILHRATGVALSIAILLLPVVLLTAVSGGEAYDCLQQHLSAWYG 60
Query: 70 EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINII 113
+V LFL T ++ +H+ GIR+L WD + K A + I+++
Sbjct: 61 QVVLFLITLSLNYHLCNGIRHLFWDAGHGFELKSADRSGAISVV 104
>gi|296103350|ref|YP_003613496.1| succinate dehydrogenase cytochrome b-556 subunit [Enterobacter
cloacae subsp. cloacae ATCC 13047]
gi|295057809|gb|ADF62547.1| succinate dehydrogenase cytochrome b-556 subunit [Enterobacter
cloacae subsp. cloacae ATCC 13047]
Length = 159
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ L+ R T SI+HR++G + ++ ++++ +
Sbjct: 34 NVKKQRPVNLDLKTIRFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFLQASA 93
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-----KKIATQMAKINIIASIL 117
M+ + ++ A+ +H++ GIR+++ D + K+ A I ++ S+L
Sbjct: 94 IMNSFFVKFIMWGILTALAYHVVVGIRHMLMDFGYLEETFEAGKRSANISFVITVVLSLL 153
Query: 118 TVLIVW 123
++VW
Sbjct: 154 AGVLVW 159
>gi|242792819|ref|XP_002482034.1| succinate dehydrogenase cytochrome b560 subunit [Talaromyces
stipitatus ATCC 10500]
gi|218718622|gb|EED18042.1| succinate dehydrogenase cytochrome b560 subunit [Talaromyces
stipitatus ATCC 10500]
Length = 188
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 5/130 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVV-FWFFCIANGEH---- 55
++ + RP+SPHL IYR T + S +HRITGS+ G V + G H
Sbjct: 59 LAQQRLKRPVSPHLSIYRPQITWYASGLHRITGSIASGGLYVFATAYLVAPVFGWHLESA 118
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
++++ + + + V H G+R+L+WD L K Q + S
Sbjct: 119 SIAAAFGALPFAAKFLVKLGLALPVTFHSFNGVRHLLWDTGRFLTNKQVIQTGWTVVGLS 178
Query: 116 ILTVLIVWII 125
++ L + ++
Sbjct: 179 TISALALALL 188
>gi|149184716|ref|ZP_01863034.1| hypothetical protein ED21_28398 [Erythrobacter sp. SD-21]
gi|148832036|gb|EDL50469.1| hypothetical protein ED21_28398 [Erythrobacter sp. SD-21]
Length = 126
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYL-GTPVVVFWFFCIANGEHTLSSLRCYMD 65
NRPLSPHLQI++ P M VSI+HR+TG + L G V ++W +A G + ++ M
Sbjct: 3 NRPLSPHLQIWKWGPHMLVSILHRVTGDGLALVGLGVFLWWLAAMAGGADSYATFAGIMG 62
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ V L +WA +HM+ GIR+ + D+ + + I+ + IL + W +
Sbjct: 63 SPIGMVVLIGLSWAFFNHMMSGIRHFVLDIGAGYELDTNKTWSVISPVLGILLTIAFWAV 122
>gi|91762626|ref|ZP_01264591.1| Succinate dehydrogenase cytochrome b [Candidatus Pelagibacter
ubique HTCC1002]
gi|91718428|gb|EAS85078.1| Succinate dehydrogenase cytochrome b [Candidatus Pelagibacter
ubique HTCC1002]
Length = 127
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 59/123 (47%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ NN PLSPH+QIYR + VSI HRITG V V+ W F + GE + + +
Sbjct: 1 MDNNNPLSPHIQIYRWHISSLVSISHRITGIVNIFAITVICLWIFSLLLGESSYDLTKLF 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + + TW+ +L IR+L+ D+ + K + I SI ++ +
Sbjct: 61 LQSIFGKFIIICLTWSFSFQVLSEIRHLVMDLGYGFELKTTKITGLLVIFGSIFFTILFY 120
Query: 124 IIK 126
++
Sbjct: 121 LLG 123
>gi|209544254|ref|YP_002276483.1| succinate dehydrogenase, cytochrome b556 subunit [Gluconacetobacter
diazotrophicus PAl 5]
gi|209531931|gb|ACI51868.1| succinate dehydrogenase, cytochrome b556 subunit [Gluconacetobacter
diazotrophicus PAl 5]
Length = 153
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 60/117 (51%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RP+SPHLQ+YR +MF+SI +R G G+ + V W A G + ++
Sbjct: 19 TRRPMSPHLQVYRFRLSMFLSIANRAAGVAAAAGSVLGVCWLNAAAKGPESFKRVQKVTR 78
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ ++ L +T ++++H + G+R+L WD +KK + I + ++ T L +
Sbjct: 79 NPMGKLALVGWTLSLVYHFVAGLRHLSWDAGYRFEKKEINEDGPIAVGVTVGTTLAL 135
>gi|71082950|ref|YP_265669.1| succinate dehydrogenase cytochrome b [Candidatus Pelagibacter
ubique HTCC1062]
gi|71062063|gb|AAZ21066.1| Succinate dehydrogenase cytochrome b [Candidatus Pelagibacter
ubique HTCC1062]
Length = 127
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 58/123 (47%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ NN PLSPH+QIYR + VSI HRITG V V+ W F + GE + + +
Sbjct: 1 MDNNNPLSPHIQIYRWHISSLVSISHRITGIVNIFAITVICLWIFSLLLGESSYDLTKLF 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + + TW+ +L IR+L+ D+ + K I SI ++ +
Sbjct: 61 LQSIFGKFIIICLTWSFSFQVLSEIRHLVMDLGYGFELKTTKITGLFVIFGSIFFTILFY 120
Query: 124 IIK 126
++
Sbjct: 121 LLG 123
>gi|91077182|ref|XP_972413.1| PREDICTED: similar to succinate dehydrogenase [Tribolium castaneum]
gi|270002816|gb|EEZ99263.1| hypothetical protein TcasGA2_TC000992 [Tribolium castaneum]
Length = 173
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYL-GTPVVVFWFFCIANGEHTLSSLR 61
+++ RP SPHL IY T +SI HR TG ++ H L +L+
Sbjct: 49 NMQLGRPQSPHLTIYSFQLTSMLSITHRATGMMLAGYAIMWGTGAVVLPDTIPHYLDALQ 108
Query: 62 -CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
++ G V + F+ + + +H GIR+L WD+ L K + ++ + +
Sbjct: 109 QAHVGGFVLSMGKFMLAFPMCYHFWNGIRHLAWDLGRFLTIKEVYATGYAMLALTVASAI 168
Query: 121 IV 122
+
Sbjct: 169 AL 170
>gi|283135232|ref|NP_001164371.1| succinate dehydrogenase cytochrome b560 subunit, mitochondrial
[Nasonia vitripennis]
Length = 175
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL--SS 59
+++ RPLSPHL IY+L T +S+ HR TG V+ ++ + G + +
Sbjct: 50 KNMRLKRPLSPHLTIYQLQLTSMLSVTHRGTGIVLSSYAMILGLGTLFVPGGVPCMVQAI 109
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ +V + ++ + + +H L GIR+L WD+ L K + + S
Sbjct: 110 AAWGLPSAVLYLGKAMFVYPLTYHYLNGIRHLAWDLGKFLTIKDVYKTGWTVVGLS 165
>gi|99078501|ref|YP_611759.1| succinate dehydrogenase subunit C [Ruegeria sp. TM1040]
gi|99035639|gb|ABF62497.1| succinate dehydrogenase subunit C [Ruegeria sp. TM1040]
Length = 127
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 63/121 (52%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RPLSPHL IYR T SI+ RITG +VV+W A E + + +
Sbjct: 6 RGKRPLSPHLTIYRPQLTSMSSIMVRITGIAALAVALLVVWWLLAAATSESAFAFIDGLL 65
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ ++ + L WA+ +HMLG +R+++WD CL+ + + ++ I + + ++ +
Sbjct: 66 RSWLGDIVMLLAAWAIFYHMLGRLRHVVWDFGYCLEVETSEKLGVGMFIGATVLTVLAAL 125
Query: 125 I 125
+
Sbjct: 126 V 126
>gi|332992984|gb|AEF03039.1| succinate dehydrogenase, cytochrome b subunit [Alteromonas sp. SN2]
Length = 124
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 61/121 (50%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ L + P SI+HR+TG ++ V++ + + ++++
Sbjct: 1 MKKQRPVNLELNTIKFPPAAISSILHRVTGVAMFFALLFVIWAWAVSVSSPEGFANVQAM 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
MDG + +V A+ +H+LGG+R+++ D+ + + AKI I I+ +++
Sbjct: 61 MDGIIGKVIAIGTLSALTYHILGGLRHVVMDLGHWEELESGNLSAKIAIALWIVLTVVLG 120
Query: 124 I 124
+
Sbjct: 121 V 121
>gi|297250644|ref|ZP_06864705.2| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
polysaccharea ATCC 43768]
gi|296838408|gb|EFH22346.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
polysaccharea ATCC 43768]
Length = 141
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RP+ L RL VSI+HRI+G +++ P ++++ + E + R +
Sbjct: 20 KPRPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVS 79
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ ++ L WA +HH GIR+L D L+ A AK ++++ +++ +
Sbjct: 80 HPLVKLILLGVLWAYLHHFFAGIRFLFLDAHKGLELNTARNTAKAVFASALVLTVVLGAL 139
>gi|115400139|ref|XP_001215658.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114191324|gb|EAU33024.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 188
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 5/130 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
++ + NRP+SPHL IYR T + S +RITG + G V + L S
Sbjct: 59 LAKQRLNRPVSPHLTIYRPQITWYASAFNRITGVALSGGMYVFATAYLAAPLFGWHLESA 118
Query: 61 RCYMDGSVFE-----VCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ + + H + G+R+L+WD+ + + + + S
Sbjct: 119 SLAAAFAALPIAAKVLLKGTIAFPFAFHCMNGVRHLVWDMGRGITNQQVIKSGWTVVGLS 178
Query: 116 ILTVLIVWII 125
L+ +++ ++
Sbjct: 179 ALSAVVLALL 188
>gi|296532571|ref|ZP_06895277.1| succinate dehydrogenase cytochrome b558 subunit [Roseomonas
cervicalis ATCC 49957]
gi|296267096|gb|EFH13015.1| succinate dehydrogenase cytochrome b558 subunit [Roseomonas
cervicalis ATCC 49957]
Length = 148
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Query: 4 IKNNRPLSPHLQIYR-LIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ NRPLSPHLQ+Y L T +SI HR TG +G V+ +W A G ++++
Sbjct: 20 TRVNRPLSPHLQVYDMLQITSGLSIAHRATGVAWSVGLLVLAWWLLAAAAGPGPFATVQW 79
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
++ + + LF T +H L G+R+L+WD D + + +I + + ++
Sbjct: 80 FLSSFLGMLMLFGMTAVAWYHTLAGLRHLMWDAGYGFDLPTTYRTGRAVLIGTGVLTVLT 139
Query: 123 WII 125
W+I
Sbjct: 140 WLI 142
>gi|304310233|ref|YP_003809831.1| Succinate dehydrogenase, cytochrome b556 subunit [gamma
proteobacterium HdN1]
gi|301795966|emb|CBL44167.1| Succinate dehydrogenase, cytochrome b556 subunit [gamma
proteobacterium HdN1]
Length = 127
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 64/124 (51%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M ++ N RP+ L+ +L T + SI+HRI+G +++ G ++++ E +
Sbjct: 1 MMTVNNQRPVHLDLRTIKLPITAYTSILHRISGVILFGGLILMLWALDVSLASEQGFEQV 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ +D ++ + A+++H+ G+R+++ D+ + + + +KI I S + +L
Sbjct: 61 KGVLDNFFVKLITWGLLSALLYHLAAGVRHMLMDIDIGETLQGGRKGSKIVFIVSGVLIL 120
Query: 121 IVWI 124
I I
Sbjct: 121 IAGI 124
>gi|83592538|ref|YP_426290.1| succinate dehydrogenase subunit C [Rhodospirillum rubrum ATCC
11170]
gi|83575452|gb|ABC22003.1| succinate dehydrogenase subunit C [Rhodospirillum rubrum ATCC
11170]
Length = 132
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 5 KNNRPLSPHLQIYRLI--PTMFVSIVHRITGSVVYLG-TPVVVFWFFCIANGEHTLSSLR 61
+ RP+SPHLQ+Y+L T +SI R+ G+ + +G T + W +GE +S++
Sbjct: 3 THPRPISPHLQVYKLHTKVTSMLSITFRVFGAALMVGGTFFFLLWIVAAGSGEQAFTSVQ 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + LF T + +H+ GIR+++WD D + + A+I+ L+
Sbjct: 63 GFYGSPFGYLVLFGLTVVLFYHLCNGIRHMLWDTGFGFDMPTLRKTGAAAVGAAIVLSLL 122
Query: 122 VWIIK 126
W +
Sbjct: 123 AWTVG 127
>gi|332373648|gb|AEE61965.1| unknown [Dendroctonus ponderosae]
Length = 176
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 2/112 (1%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIAN-GEHTLSSLR 61
+++ RP SPHL IY+ T +SI HR TG V+ T + + EH + LR
Sbjct: 50 NMRLVRPQSPHLTIYKPQLTSMLSISHRATGMVLTGYTVLFSMAAVYLDCPLEHYIEQLR 109
Query: 62 CYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINI 112
C G FL + + +H GIR+LIWD L + +
Sbjct: 110 CAEIGFGSIYALKFLIAFPLTYHFWNGIRHLIWDTGKFLTIREVYATGWAML 161
>gi|296445361|ref|ZP_06887319.1| succinate dehydrogenase, cytochrome b556 subunit [Methylosinus
trichosporium OB3b]
gi|296257122|gb|EFH04191.1| succinate dehydrogenase, cytochrome b556 subunit [Methylosinus
trichosporium OB3b]
Length = 136
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 44/117 (37%), Positives = 68/117 (58%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHL +Y+ I TM +SI HRI+G+ +Y G ++ + +A G S++ +
Sbjct: 15 RPLSPHLSVYKPIITMAMSIAHRISGAALYAGAILLALYLLGLALGPSAFSTVAWIANSL 74
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ LFL++WA+ HH+LGG+R+ IWD L LD +AK + + L +WI
Sbjct: 75 IGRAFLFLFSWALFHHLLGGVRHAIWDRGLYLDGPGRELLAKATLGGGVALTLGLWI 131
>gi|109130264|ref|XP_001093391.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like isoform 4 [Macaca mulatta]
Length = 169
Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+I +NRP+SPH+ IY M +SI HR TG + G + + N E L +
Sbjct: 44 KNISSNRPVSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ G + F + +++H GIR+L+WD+ L Q
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 152
>gi|91793541|ref|YP_563192.1| succinate dehydrogenase, cytochrome b subunit [Shewanella
denitrificans OS217]
gi|91715543|gb|ABE55469.1| succinate dehydrogenase subunit C [Shewanella denitrificans OS217]
Length = 131
Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 4/126 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP+ LQ R T VSI+HRI+G ++ ++++ +S++
Sbjct: 6 QNVKKQRPVHLDLQTIRFPATAIVSILHRISGVIMLFAIGILLWLLNSTLTSAEGFASVQ 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA----SIL 117
DG V + L+ A+ +H+LGGIR+LI D + K T AK + SI+
Sbjct: 66 SLFDGFVMKFILWGILTALGYHLLGGIRHLIMDAGCWEEFKSGTASAKALFVLAAAFSII 125
Query: 118 TVLIVW 123
+ VW
Sbjct: 126 AGVWVW 131
>gi|119572987|gb|EAW52602.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa, isoform CRA_e [Homo sapiens]
Length = 156
Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+I +NRPLSPH+ IY M +SI HR TG + G + + N E L +
Sbjct: 31 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 90
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ G + F + +++H GIR+L+WD+ L Q
Sbjct: 91 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 139
>gi|304387747|ref|ZP_07369927.1| succinate dehydrogenase cytochrome b558 subunit [Neisseria
meningitidis ATCC 13091]
gi|304338223|gb|EFM04353.1| succinate dehydrogenase cytochrome b558 subunit [Neisseria
meningitidis ATCC 13091]
gi|308389613|gb|ADO31933.1| putative succinate dehydrogenase cytochrome B subunit [Neisseria
meningitidis alpha710]
Length = 141
Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RP+ L RL VSI+HRI+G +++ P ++++ + E + R +
Sbjct: 20 KPRPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVS 79
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ ++ L WA +HH L GIR+L D L+ A AK ++++ +++ +
Sbjct: 80 HPLVKLVLIGVLWAYLHHSLAGIRFLFLDAHKGLELNTARNTAKAVFASALVLTVVLGAL 139
>gi|119774560|ref|YP_927300.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
amazonensis SB2B]
gi|119767060|gb|ABL99630.1| succinate dehydrogenase subunit C [Shewanella amazonensis SB2B]
Length = 131
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 55/123 (44%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP+ LQ T VSI+HR++G ++ ++++ + ++
Sbjct: 6 QNVKKQRPVHLDLQTIHFPATAKVSILHRVSGVIMLFAMGILIWLLHASLASAESFQGVQ 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
D + + ++ A+ +H+LGGIR+L+ D + AK + +I +I
Sbjct: 66 ALFDNFLVKFVIWGILTALGYHLLGGIRHLVMDTGRWEELGSGNASAKAVFVLAITFSII 125
Query: 122 VWI 124
I
Sbjct: 126 AGI 128
>gi|29418059|gb|AAO39685.1| succinate dehydrogenase cytochrome b-556 subunit [Enterobacter
cloacae]
Length = 159
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ L+ R T SI+HR++G + ++ ++++ +
Sbjct: 34 NVKKQRPVNLDLKTIRFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFLQASA 93
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-----KKIATQMAKINIIASIL 117
M+ + ++ A+ +H++ G+R+++ D + K+ A I ++ S+L
Sbjct: 94 IMNSFFVKFIMWGILTALAYHVVVGVRHMLMDFGYLEETFEAGKRSANISFVITVVLSLL 153
Query: 118 TVLIVW 123
++VW
Sbjct: 154 AGVLVW 159
>gi|192362455|ref|YP_001981987.1| Succinate dehydrogenase cytochrome b subunit [Cellvibrio japonicus
Ueda107]
gi|190688620|gb|ACE86298.1| Succinate dehydrogenase cytochrome b subunit [Cellvibrio japonicus
Ueda107]
Length = 128
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 63/125 (50%), Gaps = 2/125 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
S++K NRP++ + +L T +VSI+HRI+G ++ G +++ ++
Sbjct: 3 STVKKNRPVNLDISTIKLPITAYVSILHRISGIFLFAGVAFLLWMLDISLRSAEGFEQVK 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + L+ + +H++ GIR+LI D+ + K AK+ ++ + + +++
Sbjct: 63 AIGASPLCQFILWAVLAGLAYHLVAGIRHLIMDLGVGETLKGGQLGAKLVVVIATVLIIL 122
Query: 122 --VWI 124
VW+
Sbjct: 123 AGVWV 127
>gi|260425602|ref|ZP_05779582.1| succinate dehydrogenase, cytochrome b556 subunit [Citreicella sp.
SE45]
gi|260423542|gb|EEX16792.1| succinate dehydrogenase, cytochrome b556 subunit [Citreicella sp.
SE45]
Length = 131
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 5 KNNRPLSPHL--QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ RPLSP + Q YRL T S++ RITG+ + + ++++W +A G +
Sbjct: 6 RIERPLSPFMFVQYYRLQLTAVTSVMIRITGNAMMVAVLLLIWWLLALAAGPEYFETAEW 65
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
++ V ++ +F WA+ +H LGG+R+L++D LD + A ++ I + S++ ++
Sbjct: 66 WITSFVGDLIMFGSLWAIWYHYLGGLRHLVFDAGKGLDIETAEKLGWICVYGSVVLTILT 125
Query: 123 WII 125
II
Sbjct: 126 VII 128
>gi|153001031|ref|YP_001366712.1| succinate dehydrogenase cytochrome b556 subunit [Shewanella baltica
OS185]
gi|151365649|gb|ABS08649.1| Succinate dehydrogenase cytochrome b556 subunit [Shewanella baltica
OS185]
Length = 131
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 55/123 (44%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP+ LQ R T VSI+HR++G ++ ++++ + + ++
Sbjct: 6 QNVKKQRPVHLDLQTIRFPATAIVSILHRVSGVIMLFAVGILIWLLNSSLASAESFAGVQ 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
D V + L+ A+ +H+ GG+R+L+ D + AK ++ +I
Sbjct: 66 SLFDNFVMKFILWGIMTALAYHLFGGLRHLVMDTGRWEELSSGAASAKAVFALTVAFSII 125
Query: 122 VWI 124
I
Sbjct: 126 AGI 128
>gi|302191657|ref|NP_001180516.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa [Macaca mulatta]
gi|109086211|ref|XP_001093733.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like isoform 3 [Macaca mulatta]
Length = 169
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+I +NRP+SPH+ IY M +SI HR TG + G + + N E L +
Sbjct: 44 KNISSNRPVSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ G + F + +++H GIR+L+WD+ L Q
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 152
>gi|24373491|ref|NP_717534.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
oneidensis MR-1]
gi|24347791|gb|AAN54978.1|AE015636_2 succinate dehydrogenase, cytochrome b556 subunit [Shewanella
oneidensis MR-1]
Length = 131
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP+ LQ R T VSI+HR++G ++ ++++ + + ++
Sbjct: 6 QNVKKQRPVHLDLQTIRFPATAIVSILHRVSGVIMLFAVGILIWLLNSSLASAESFAGVQ 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
D V + ++ A+ H+ GG+R+L+ D + T AK + ++ ++
Sbjct: 66 SLFDNFVVKFIMWGILTALTFHLFGGLRHLVMDTGRWEELASGTASAKAVFVLTVAFSIL 125
Query: 122 --VWI 124
+W+
Sbjct: 126 AGLWV 130
>gi|332219327|ref|XP_003258808.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like isoform 1 [Nomascus leucogenys]
Length = 169
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+I +NRPLSPH+ IY M +SI HR TG + G + + N E L +
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ G + F + +++H GIR+L+WD+ L Q
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLVWDLGKGLKIPQLYQSG 152
>gi|894229|gb|AAB33776.1| succinate-ubiquinone reductase QPs1 subunit [cattle, heart, Peptide
Mitochondrial, 140 aa]
Length = 140
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ NRPLSPH+ IY M +SI HR TG + G + + + E L +
Sbjct: 15 KNTTLNRPLSPHISIYGWSLPMAMSICHRGTGIALSAGVSLFGLSALLVPGSFESHLEFV 74
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G + F + +++H GIR+L+WD+ L Q ++ ++L+
Sbjct: 75 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLTISQLHQSGVAVLVLTVLSS 134
Query: 120 LIVWII 125
+ + +
Sbjct: 135 VGLAAM 140
>gi|57768830|ref|NP_001003523.1| succinate dehydrogenase complex, subunit C, integral membrane
protein [Danio rerio]
gi|50417100|gb|AAH78306.1| Succinate dehydrogenase complex, subunit C, integral membrane
protein [Danio rerio]
Length = 144
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 2/127 (1%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTP-VVVFWFFCIANGEHTLSS 59
+ + NRP+SPH+ IY+ M +SI HR TG + G + + + L
Sbjct: 18 QKNTRLNRPMSPHMTIYKWSVPMAMSISHRGTGIALSSGISAFALAALVLPESYPYYLDL 77
Query: 60 LRCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
+ G F + V++H GIR+L WD + + + ++LT
Sbjct: 78 IHSLTFGPQFLAFSKFALAFPVVYHTYNGIRHLAWDAGKGFKIPEVYRSGYVVLGLTVLT 137
Query: 119 VLIVWII 125
+ + +
Sbjct: 138 SIGLAAM 144
>gi|170050185|ref|XP_001859594.1| mitochondrial succinate dehydrogenase cytochrome b subunit [Culex
quinquefasciatus]
gi|167871715|gb|EDS35098.1| mitochondrial succinate dehydrogenase cytochrome b subunit [Culex
quinquefasciatus]
Length = 171
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 45/118 (38%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ + RP SPHL IY T +SI HR+TG + + + + ++
Sbjct: 49 NARLQRPQSPHLTIYSFQLTAVLSITHRMTGMALAGYATALGLGALAMPHDATHYLTMLE 108
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ F + +H + G+R+L WD+ L K ++ S +
Sbjct: 109 GLSAPTLMALKFTMAYPFSYHTVNGVRHLFWDLGKFLSIKEVYTTGYTMLLVSGVLAA 166
>gi|212635740|ref|YP_002312265.1| succinate dehydrogenase, cytochrome b subunit [Shewanella
piezotolerans WP3]
gi|212557224|gb|ACJ29678.1| Succinate dehydrogenase, cytochrome b subunit [Shewanella
piezotolerans WP3]
Length = 146
Score = 113 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP+ LQ + T SI+HR++G ++ ++++ + + ++
Sbjct: 21 QNVKKQRPVHLDLQTVKFPATAIASILHRVSGVIMLFAVGILIWLLNESLASAESFAGVQ 80
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
D + + ++ A+ +H++ G+R+L+ D + AK+ I S++ +I
Sbjct: 81 SLFDSFIVKFIVWGILTALGYHLIVGLRHLVMDAGYWEELSSGLASAKVAIALSVVFSII 140
Query: 122 --VWI 124
+W+
Sbjct: 141 AGIWV 145
>gi|126174732|ref|YP_001050881.1| succinate dehydrogenase, cytochrome subunit B [Shewanella baltica
OS155]
gi|217973009|ref|YP_002357760.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
baltica OS223]
gi|304409109|ref|ZP_07390730.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
baltica OS183]
gi|307303112|ref|ZP_07582867.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
baltica BA175]
gi|125997937|gb|ABN62012.1| succinate dehydrogenase subunit C [Shewanella baltica OS155]
gi|217498144|gb|ACK46337.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
baltica OS223]
gi|304352930|gb|EFM17327.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
baltica OS183]
gi|306913472|gb|EFN43894.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
baltica BA175]
Length = 131
Score = 113 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 55/123 (44%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP+ LQ R T VSI+HR++G ++ ++++ + + ++
Sbjct: 6 QNVKKQRPVHLDLQTIRFPATAIVSILHRVSGVIMLFAVGILIWLLNSSLASAESFAGVQ 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
D V + ++ A+ +H+ GG+R+L+ D + AK ++ +I
Sbjct: 66 SLFDNFVMKFIMWGIMTALAYHLFGGLRHLVMDTGRWEELSSGAASAKAVFALTVAFSII 125
Query: 122 VWI 124
I
Sbjct: 126 AGI 128
>gi|269214842|ref|ZP_05987260.2| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
lactamica ATCC 23970]
gi|269208913|gb|EEZ75368.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
lactamica ATCC 23970]
Length = 141
Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 58/120 (48%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RP+ L RL VSI+HRI+G +++ P ++++ + E + R +
Sbjct: 20 KPRPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVS 79
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ ++ L WA +HH L GIR+L D L+ A AK+ A+++ +++ +
Sbjct: 80 HPLVKLVLIGVLWAYLHHSLAGIRFLFLDAHKGLELNTARNTAKLVFTAALVLTVVLGAL 139
>gi|312959839|ref|ZP_07774355.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
fluorescens WH6]
gi|311286005|gb|EFQ64570.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
fluorescens WH6]
Length = 124
Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L+ +L T S +HR++G +++LG ++++ E + ++
Sbjct: 1 MNSQRPVNLDLRTIKLPITGVTSFLHRVSGIILFLGLGIMLYALSKSLGSEEGYAEVKAC 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
+ + + + A+++H++ G+R+LI D+ + + +KI I S++ +++
Sbjct: 61 LTSPLAKFVAWGLLSALLYHLVAGVRHLIMDMGIGETLEGGRLGSKIIIAISVVLIVLAG 120
Query: 122 VWI 124
VWI
Sbjct: 121 VWI 123
>gi|254503128|ref|ZP_05115279.1| succinate dehydrogenase, cytochrome b556 subunit [Labrenzia
alexandrii DFL-11]
gi|222439199|gb|EEE45878.1| succinate dehydrogenase, cytochrome b556 subunit [Labrenzia
alexandrii DFL-11]
Length = 108
Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 42/107 (39%), Positives = 61/107 (57%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M +SI+HRITG+ +Y GT ++ +W A G + + + LF +TWA++H
Sbjct: 1 MVMSILHRITGAALYFGTILLAWWLIAAAAGPAYFDFVNAIYGSIIGRLVLFGFTWALVH 60
Query: 83 HMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDIV 129
HMLGGIR+ IWD+ +K +AK II S+ LI+WII V
Sbjct: 61 HMLGGIRHFIWDMGAGFEKDAREWLAKATIIGSVSLTLILWIIGYAV 107
>gi|83647436|ref|YP_435871.1| succinate dehydrogenase (C subunit) [Hahella chejuensis KCTC 2396]
gi|83635479|gb|ABC31446.1| succinate dehydrogenase (C subunit) [Hahella chejuensis KCTC 2396]
Length = 132
Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++ + RP++ L + SI+HRI+G ++++ +++ + + +SL+
Sbjct: 7 EAVNSKRPVNLDLTKFHFPLPAITSILHRISGVIIFIAMAFLLWGLDASLASKESFASLQ 66
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
MD + ++ L+ A+ +H + GI++LI D + K AK+ I S++ +L+
Sbjct: 67 SVMDSFLAKLILWGILAALFYHFVAGIKHLIMDAGIGETLKGGQIAAKVVIAVSVVLILL 126
Query: 122 --VWI 124
VWI
Sbjct: 127 AGVWI 131
>gi|332141293|ref|YP_004427031.1| succinate dehydrogenase, cytochrome b subunit [Alteromonas
macleodii str. 'Deep ecotype']
gi|327551315|gb|AEA98033.1| succinate dehydrogenase, cytochrome b subunit [Alteromonas
macleodii str. 'Deep ecotype']
Length = 124
Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 60/121 (49%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ L + P+ SI+HR+TG ++ V++ + + ++++
Sbjct: 1 MKKQRPVNLELNTIKFPPSAISSILHRVTGVAMFFALLFVIWAWAVSVHSAEGFANVQAI 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
M+G + + A+ +H+LGG+R+++ D+ + + AK I ++ +++
Sbjct: 61 MNGFLGKFVAIGTASALTYHILGGLRHVVMDLGHWEELESGNTSAKAVIALWVVLTVVLG 120
Query: 124 I 124
+
Sbjct: 121 V 121
>gi|4506863|ref|NP_002992.1| succinate dehydrogenase cytochrome b560 subunit, mitochondrial
isoform 1 precursor [Homo sapiens]
gi|5915811|sp|Q99643|C560_HUMAN RecName: Full=Succinate dehydrogenase cytochrome b560 subunit,
mitochondrial; AltName: Full=Integral membrane protein
CII-3; AltName: Full=QPs-1; Short=QPs1; AltName:
Full=Succinate dehydrogenase complex subunit C; AltName:
Full=Succinate-ubiquinone oxidoreductase cytochrome B
large subunit; Short=CYBL; Flags: Precursor
gi|1814226|gb|AAB41838.1| integral membrane protein CII-3 [Homo sapiens]
gi|3366669|gb|AAC27993.1| succinate dehydrogenase subunit C [Homo sapiens]
gi|3370989|dbj|BAA31998.1| cytochrome b large subunit of complex II [Homo sapiens]
gi|18088742|gb|AAH20808.1| Succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa [Homo sapiens]
gi|21708000|gb|AAH33626.1| Succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa [Homo sapiens]
gi|42542834|gb|AAH66329.1| Succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa [Homo sapiens]
gi|55665931|emb|CAH70271.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa [Homo sapiens]
gi|119572985|gb|EAW52600.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa, isoform CRA_c [Homo sapiens]
Length = 169
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+I +NRPLSPH+ IY M +SI HR TG + G + + N E L +
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ G + F + +++H GIR+L+WD+ L Q
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 152
>gi|114798487|ref|YP_761916.1| succinate dehydrogenase, cytochrome b556 subunit [Hyphomonas
neptunium ATCC 15444]
gi|114738661|gb|ABI76786.1| succinate dehydrogenase, cytochrome b556 subunit [Hyphomonas
neptunium ATCC 15444]
Length = 132
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPH+QI+R + SI HRITG +Y+GT ++ W +A +++ +
Sbjct: 10 RPLSPHIQIWRWHISALASITHRITGGALYVGTFLIAAWLVALAISPDAYAAMEGIITSI 69
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWD-VSLCLDKKIATQMAKINIIASILT 118
++ LFL+ A + H+ GIR+LIWD + K+A+Q++ + +IL+
Sbjct: 70 PGKIVLFLWAVATLFHLYNGIRHLIWDGPGIGFSPKVASQVSTFIYVLAILS 121
>gi|160875744|ref|YP_001555060.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
baltica OS195]
gi|160861266|gb|ABX49800.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
baltica OS195]
gi|315267933|gb|ADT94786.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
baltica OS678]
Length = 131
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 54/123 (43%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP+ LQ R T SI+HR++G ++ ++++ + + ++
Sbjct: 6 QNVKKQRPVHLDLQTIRFPATAIASILHRVSGVIMLFAVGILIWLLNSSLASAESFAGVQ 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
D V + ++ A+ +H+ GG+R+L+ D + AK ++ +I
Sbjct: 66 SLFDNFVMKFIMWGIMTALAYHLFGGLRHLVMDTGRWEELSSGAASAKAVFALTVAFSII 125
Query: 122 VWI 124
I
Sbjct: 126 AGI 128
>gi|67903612|ref|XP_682062.1| hypothetical protein AN8793.2 [Aspergillus nidulans FGSC A4]
gi|40741396|gb|EAA60586.1| hypothetical protein AN8793.2 [Aspergillus nidulans FGSC A4]
gi|67517322|gb|AAY68233.1| cytochrome B-560 subunit of succinate dehydrogenase [Emericella
nidulans]
gi|259483001|tpe|CBF78009.1| TPA: Cytochrome B-560 subunit of succinate dehydrogenasePutative
uncharacterized protein ;
[Source:UniProtKB/TrEMBL;Acc:Q5ASD7] [Aspergillus
nidulans FGSC A4]
Length = 191
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 15/135 (11%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV----------YLGTPVVVFWFFCI 50
+ + RP+SPHL IYR T ++S +HR+TG ++ YL P+ W
Sbjct: 62 LVEQRLRRPVSPHLTIYRPQITWYMSALHRVTGIILSGPLYIFATAYLAAPLF-GWHLES 120
Query: 51 ANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKI 110
A+ + ++L S+ + +H G+R+L+WD + K Q
Sbjct: 121 ASLAASFATLPLAAKFSLKTLA----ALPFTYHSFNGLRHLMWDTGRGITNKQVIQTGWT 176
Query: 111 NIIASILTVLIVWII 125
+ SI + L + +
Sbjct: 177 VVGLSIASALYLAYV 191
>gi|303319777|ref|XP_003069888.1| Succinate dehydrogenase cytochrome b subunit family protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240109574|gb|EER27743.1| Succinate dehydrogenase cytochrome b subunit family protein
[Coccidioides posadasii C735 delta SOWgp]
Length = 193
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVV-FWFFCIANGEHTLSS 59
++ + NRP+SPHL IYR + ++S ++RITGSV+ G V + A G H S+
Sbjct: 64 LAQQRLNRPVSPHLTIYRPQISWYLSALNRITGSVLSGGLYVFATAYLVAPAIGWHLESA 123
Query: 60 LRCYMDGSVFEVCLF----LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
G++ F H + G+R+LIWD+ L K + S
Sbjct: 124 SLAAAFGALPLAAKFAIKLGVAMPFTFHCMNGVRHLIWDLGKKLSNKEVIATGWTVVGLS 183
Query: 116 ILTVLIVWII 125
+ + + +I
Sbjct: 184 MASAFALALI 193
>gi|332306145|ref|YP_004433996.1| succinate dehydrogenase, cytochrome b556 subunit [Glaciecola
agarilytica 4H-3-7+YE-5]
gi|332173474|gb|AEE22728.1| succinate dehydrogenase, cytochrome b556 subunit [Glaciecola
agarilytica 4H-3-7+YE-5]
Length = 124
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 52/111 (46%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ L P SI+HRITG ++ V++ + + + ++
Sbjct: 1 MKKQRPVNLQLNTISFPPAAITSILHRITGVAMFFALLFVIWAWAESVSSPDGFAFVQEQ 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
M G + ++ A+ +H+LGG+R+L+ D+ + + AKI I
Sbjct: 61 MSGVIGKIIAIGTISALTYHILGGLRHLVMDMGHWEELESGNNSAKIVIGL 111
>gi|118781278|ref|XP_311387.3| AGAP010672-PA [Anopheles gambiae str. PEST]
gi|116130095|gb|EAA07051.3| AGAP010672-PA [Anopheles gambiae str. PEST]
Length = 175
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 45/120 (37%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ + RP SPHL IY T +SI HR TG + + + + ++
Sbjct: 53 NARLKRPQSPHLTIYSFQLTSMLSITHRFTGLALTGYITALGLGALAMPHDATHYLTMLE 112
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ F + +H + G+R+L WD+ L K + S + ++
Sbjct: 113 GLSAPTLIALKFTMAYPFAYHTVNGVRHLFWDMGKFLTIKEVYTTGYTMLGVSGVLAGLL 172
>gi|91077184|ref|XP_972464.1| PREDICTED: similar to succinate dehydrogenase [Tribolium castaneum]
gi|270002817|gb|EEZ99264.1| hypothetical protein TcasGA2_TC000993 [Tribolium castaneum]
Length = 172
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 2/125 (1%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-EHTLSSLR 61
++K RP SPHL IY T +SI HR TG ++ T V+ + + E L++L
Sbjct: 48 NMKLGRPQSPHLTIYAPQMTSMLSISHRATGMILTFYTIVLGTGAIILPDSIETYLNALE 107
Query: 62 CY-MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
Y + G V V F+ + + +H GIR+L WD+ L L K + + +
Sbjct: 108 EYHVGGVVLSVGKFILAFPLTYHYWNGIRHLAWDIGLFLSLKEVYMTGFAMLGLAYGSAA 167
Query: 121 IVWII 125
++ +I
Sbjct: 168 VLSVI 172
>gi|48146321|emb|CAG33383.1| SDHC [Homo sapiens]
Length = 169
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+I +NRPLSPH+ IY M +SI HR TG + G + + N E L +
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ G + F + +++H GIR+L+WD+ L Q
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 152
>gi|15800425|ref|NP_286437.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O157:H7 EDL933]
gi|15830000|ref|NP_308773.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O157:H7 str. Sakai]
gi|16128696|ref|NP_415249.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli str. K-12 substr. MG1655]
gi|74311245|ref|YP_309664.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Shigella sonnei Ss046]
gi|82543148|ref|YP_407095.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Shigella boydii Sb227]
gi|82775989|ref|YP_402336.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Shigella dysenteriae Sd197]
gi|89107579|ref|AP_001359.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli str. K-12 substr. W3110]
gi|170080388|ref|YP_001729708.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli str. K-12 substr. DH10B]
gi|218694145|ref|YP_002401812.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli 55989]
gi|218704038|ref|YP_002411557.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli UMN026]
gi|238899986|ref|YP_002925782.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli BW2952]
gi|254160791|ref|YP_003043899.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli B str. REL606]
gi|254791867|ref|YP_003076704.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O157:H7 str. TW14359]
gi|291281653|ref|YP_003498471.1| Succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
O55:H7 str. CB9615]
gi|293403965|ref|ZP_06647959.1| sdhC [Escherichia coli FVEC1412]
gi|293409095|ref|ZP_06652671.1| succinate dehydrogenase [Escherichia coli B354]
gi|297521386|ref|ZP_06939772.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli OP50]
gi|298379741|ref|ZP_06989346.1| sdhC [Escherichia coli FVEC1302]
gi|60392191|sp|P69054|DHSC_ECOLI RecName: Full=Succinate dehydrogenase cytochrome b556 subunit;
Short=Cytochrome b-556
gi|60392192|sp|P69055|DHSC_ECO57 RecName: Full=Succinate dehydrogenase cytochrome b556 subunit;
Short=Cytochrome b-556
gi|28948820|pdb|1NEK|C Chain C, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Ubiquinone Bound
gi|28948824|pdb|1NEN|C Chain C, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Dinitrophenol-17 Inhibitor Co-Crystallized At The
Ubiquinone Binding Site
gi|85544086|pdb|2ACZ|C Chain C, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Atpenin A5 Inhibitor Co-Crystallized At The Ubiquinone
Binding Site
gi|256599502|pdb|2WDQ|C Chain C, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
gi|256599506|pdb|2WDQ|G Chain G, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
gi|256599510|pdb|2WDQ|K Chain K, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
gi|256599514|pdb|2WDV|C Chain C, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
gi|256599518|pdb|2WDV|G Chain G, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
gi|256599522|pdb|2WDV|K Chain K, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
gi|259045635|pdb|2WDR|C Chain C, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
gi|259045639|pdb|2WDR|G Chain G, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
gi|259045643|pdb|2WDR|K Chain K, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
gi|304445590|pdb|2WP9|C Chain C, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
gi|304445594|pdb|2WP9|G Chain G, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
gi|304445598|pdb|2WP9|K Chain K, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
gi|304445614|pdb|2WS3|C Chain C, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
gi|304445618|pdb|2WS3|G Chain G, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
gi|304445622|pdb|2WS3|K Chain K, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
gi|304445642|pdb|2WU5|C Chain C, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
gi|304445646|pdb|2WU5|G Chain G, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
gi|304445650|pdb|2WU5|K Chain K, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
gi|12513636|gb|AAG55045.1|AE005250_4 succinate dehydrogenase, cytochrome b556 [Escherichia coli O157:H7
str. EDL933]
gi|42923|emb|CAA25485.1| unnamed protein product [Escherichia coli]
gi|146197|gb|AAA23893.1| succinate dehydrogenase [Escherichia coli K-12]
gi|495784|gb|AAA24616.1| succinate dehydrogenase [Escherichia coli]
gi|1651317|dbj|BAA35388.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli str. K12 substr. W3110]
gi|1786940|gb|AAC73815.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli str. K-12 substr. MG1655]
gi|13360204|dbj|BAB34169.1| succinate dehydrogenase [Escherichia coli O157:H7 str. Sakai]
gi|73854722|gb|AAZ87429.1| succinate dehydrogenase, cytochrome b556 [Shigella sonnei Ss046]
gi|81240137|gb|ABB60847.1| succinate dehydrogenase [Shigella dysenteriae Sd197]
gi|81244559|gb|ABB65267.1| succinate dehydrogenase [Shigella boydii Sb227]
gi|169888223|gb|ACB01930.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli str. K-12 substr. DH10B]
gi|209776538|gb|ACI86581.1| succinate dehydrogenase [Escherichia coli]
gi|209776540|gb|ACI86582.1| succinate dehydrogenase [Escherichia coli]
gi|209776542|gb|ACI86583.1| succinate dehydrogenase [Escherichia coli]
gi|209776544|gb|ACI86584.1| succinate dehydrogenase [Escherichia coli]
gi|209776546|gb|ACI86585.1| succinate dehydrogenase [Escherichia coli]
gi|218350877|emb|CAU96575.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli 55989]
gi|218431135|emb|CAR12011.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli UMN026]
gi|238863588|gb|ACR65586.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli BW2952]
gi|242376483|emb|CAQ31187.1| succinate dehydrogenase membrane protein, subunit of succinate
dehydrogenase [Escherichia coli BL21(DE3)]
gi|253972692|gb|ACT38363.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli B str. REL606]
gi|253976886|gb|ACT42556.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli BL21(DE3)]
gi|254591267|gb|ACT70628.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli O157:H7 str. TW14359]
gi|290761526|gb|ADD55487.1| Succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
O55:H7 str. CB9615]
gi|291428551|gb|EFF01576.1| sdhC [Escherichia coli FVEC1412]
gi|291469563|gb|EFF12047.1| succinate dehydrogenase [Escherichia coli B354]
gi|298279439|gb|EFI20947.1| sdhC [Escherichia coli FVEC1302]
gi|309700943|emb|CBJ00240.1| succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
ETEC H10407]
gi|324116262|gb|EGC10183.1| succinate dehydrogenase [Escherichia coli E1167]
gi|332342056|gb|AEE55390.1| succinate dehydrogenase, cytochrome b556 subunit, SdhC [Escherichia
coli UMNK88]
Length = 129
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ +
Sbjct: 4 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASA 63
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASILTVLI 121
M + ++ A+ +H++ GIR+++ D + + + AKI+ + +++ L+
Sbjct: 64 IMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLL 123
Query: 122 VWII 125
++
Sbjct: 124 AGVL 127
>gi|146307530|ref|YP_001187995.1| succinate dehydrogenase subunit C [Pseudomonas mendocina ymp]
gi|145575731|gb|ABP85263.1| succinate dehydrogenase subunit C [Pseudomonas mendocina ymp]
Length = 128
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 68/124 (54%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ ++ + RP++ L+ +L T + SI+HRI+G ++++G +++F E + +
Sbjct: 2 IKAVNSQRPVNLDLRTIKLPITAYTSILHRISGVILFVGIAILLFGLDKSLTSEEGFAQV 61
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + + + ++ A+++H++ G+R+LI D+ + + +KI I + + ++
Sbjct: 62 KECLTSPLAKFVIWGLLSALLYHLVAGVRHLIMDMGIGETLEGGKLGSKIVIAVAAIVIV 121
Query: 121 IVWI 124
++ +
Sbjct: 122 LLGV 125
>gi|88798678|ref|ZP_01114261.1| putative succinate dehydrogenase, hydrophobic subunit [Reinekea sp.
MED297]
gi|88778441|gb|EAR09633.1| putative succinate dehydrogenase, hydrophobic subunit [Reinekea sp.
MED297]
Length = 124
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 56/121 (46%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+KNNRP++ L R+ T SI HR+TG +++ +++ ++
Sbjct: 1 MKNNRPVNLDLTTIRMPVTAIASITHRVTGVGLFVAVGFLLWALSTSLESAEGFRQVQGV 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
M + + V++H++ GI++L D K+ +K+ ++ S + +++V
Sbjct: 61 MSHWFAKFITWGIVSFVVYHLIAGIKHLFMDAGYFETKETGPVASKVVLVLSAIGIVLVG 120
Query: 124 I 124
+
Sbjct: 121 V 121
>gi|195389516|ref|XP_002053422.1| GJ23871 [Drosophila virilis]
gi|194151508|gb|EDW66942.1| GJ23871 [Drosophila virilis]
Length = 170
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT-PVVVFWFFCIANGEHTLSSL 60
+ + R +SPHL IY+ T +SI+HR TG + +G + + + H ++ +
Sbjct: 45 KNERLGRQMSPHLTIYKPQLTSMLSIMHRGTGLALGIGVWGLGLGALIASQDIGHYVTMV 104
Query: 61 RCY-MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G+ F+ + V +H GIR+LIWD L K + + S++
Sbjct: 105 EGLQLSGAALTAIKFIIAYPVGYHSANGIRHLIWDTGRFLKIKEVYSTGYVMVATSVVLT 164
Query: 120 LIVWII 125
I+ ++
Sbjct: 165 AILALL 170
>gi|325303890|tpg|DAA34619.1| TPA_inf: truncated succinate dehydrogenase cytochrome b subunit
[Amblyomma variegatum]
Length = 173
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV-YLGTPVVVFWFFCIANGEHTLSSL 60
+ NRPLSPHL IY+ TM +S+ HR+TG + + + C + H + +L
Sbjct: 48 KNKSLNRPLSPHLGIYKQQITMVLSLTHRVTGIGMTAFVYGMGLMPLVCSHHFPHYVEAL 107
Query: 61 RCYMDGSVFEV-CLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
R V +A+ +H G+R++ WD+ L K + S++
Sbjct: 108 RAMEISPVLTFPVKLGLAFALCYHTFNGVRHMAWDLGLGFAIKELYATGYFVVALSLVGA 167
Query: 120 LIV 122
I+
Sbjct: 168 AIL 170
>gi|149040637|gb|EDL94594.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, isoform CRA_a [Rattus norvegicus]
Length = 132
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ +NRP+SPHL IYR M +S+ HR +G + G + + N E L +
Sbjct: 7 KNTSSNRPVSPHLTIYRWSLPMAMSVCHRGSGIAMSGGVSLFGLSALLLPGNFESYLMLV 66
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G + F+ + +++H L G+R+L+WD+ L ++ ++L+
Sbjct: 67 KSLCLGPALIHAAKFVLVFPLMYHSLNGVRHLMWDLGKGLSISQVQLSGVTVLVLAVLSS 126
Query: 120 LIVWII 125
+ I
Sbjct: 127 AGLAAI 132
>gi|110804651|ref|YP_688171.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Shigella flexneri 5 str. 8401]
gi|161485938|ref|NP_706513.2| succinate dehydrogenase cytochrome b556 large membrane subunit
[Shigella flexneri 2a str. 301]
gi|161486531|ref|NP_836287.2| succinate dehydrogenase cytochrome b556 large membrane subunit
[Shigella flexneri 2a str. 2457T]
gi|110614199|gb|ABF02866.1| succinate dehydrogenase, cytochrome b556 [Shigella flexneri 5 str.
8401]
gi|281599964|gb|ADA72948.1| Succinate dehydrogenase cytochrome b-556 subunit [Shigella flexneri
2002017]
Length = 129
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++ + +
Sbjct: 4 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILQWLLGTSLSSPEGFEQASA 63
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASILTVLI 121
M + ++ A+ +H++ GIR+++ D + + + AKI+ + +++ L+
Sbjct: 64 IMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLL 123
Query: 122 VWII 125
++
Sbjct: 124 AGVL 127
>gi|321470744|gb|EFX81719.1| hypothetical protein DAPPUDRAFT_49817 [Daphnia pulex]
Length = 169
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSV-VYLGTPVVVFWFFCIANGEHTLSSL 60
+ + RP+SPHL IY+ M +SI HR TG L + + A+ H L L
Sbjct: 45 KNKRLQRPISPHLSIYQFQSNMALSITHRFTGLAQNGLMYGLAIGAMVLPASFPHYLGML 104
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
V FL + +H++ G+R+L+WD L K + + A++ L
Sbjct: 105 EAAHLPLVVLSGKFLIAFPFSYHLINGMRHLVWDTGFNLTIKGIQSTGYVVLAAAVSLAL 164
>gi|229589333|ref|YP_002871452.1| succinate dehydrogenase cytochrome b556 subunit [Pseudomonas
fluorescens SBW25]
gi|229361199|emb|CAY48063.1| succinate dehydrogenase cytochrome b556 subunit [Pseudomonas
fluorescens SBW25]
Length = 124
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L+ +L T S +HR++G +++LG ++++ E + ++
Sbjct: 1 MNSQRPVNLDLRTIKLPITGVTSFLHRVSGIILFLGLGIMLYALSKSLGSEEGYAEVKAC 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
+ + + + ++++H++ G+R+LI D+ + + +KI I S++ +++
Sbjct: 61 LTSPLAKFVAWGLLSSLLYHLVAGVRHLIMDMGIGETLEGGRLGSKIIIAISVVLIVLAG 120
Query: 122 VWI 124
VWI
Sbjct: 121 VWI 123
>gi|120554077|ref|YP_958428.1| fumarate reductase, D subunit [Marinobacter aquaeolei VT8]
gi|120323926|gb|ABM18241.1| succinate dehydrogenase subunit C [Marinobacter aquaeolei VT8]
Length = 125
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L + SI+HRI+G ++++G +++ +GE + +
Sbjct: 1 MNSKRPVNLDLGKFHFPLPAITSILHRISGIIIFVGVAFLMYGLDLSLSGEDGFNRVNEL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
+D + ++ ++ A+++H++ GI++L+ D + + + AK I S++ +++
Sbjct: 61 LDSFLAKLIIWGILSALLYHLVAGIKHLLMDAGIGEELESGRLAAKATIAVSVVLIVLAG 120
Query: 122 VWI 124
VW+
Sbjct: 121 VWV 123
>gi|15676841|ref|NP_273986.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis MC58]
gi|121634750|ref|YP_974995.1| putative succinate dehydrogenase cytochrome B subunit [Neisseria
meningitidis FAM18]
gi|161869861|ref|YP_001599030.1| succinate dehydrogenase cytochrome B subunit [Neisseria
meningitidis 053442]
gi|218768032|ref|YP_002342544.1| putative succinate dehydrogenase cytochrome B subunit [Neisseria
meningitidis Z2491]
gi|254804831|ref|YP_003083052.1| succinate dehydrogenase cytochrome b-556 subunit [Neisseria
meningitidis alpha14]
gi|7226187|gb|AAF41354.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis MC58]
gi|120866456|emb|CAM10202.1| putative succinate dehydrogenase cytochrome B subunit [Neisseria
meningitidis FAM18]
gi|121052040|emb|CAM08349.1| putative succinate dehydrogenase cytochrome B subunit [Neisseria
meningitidis Z2491]
gi|161595414|gb|ABX73074.1| succinate dehydrogenase cytochrome B subunit [Neisseria
meningitidis 053442]
gi|254668373|emb|CBA05461.1| succinate dehydrogenase cytochrome b-556 subunit [Neisseria
meningitidis alpha14]
gi|254671329|emb|CBA08736.1| succinate dehydrogenase cytochrome b-556 subunit [Neisseria
meningitidis alpha153]
gi|261392704|emb|CAX50277.1| succinate dehydrogenase cytochrome b-556 subunit [Neisseria
meningitidis 8013]
gi|316985351|gb|EFV64300.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis H44/76]
gi|319410281|emb|CBY90623.1| succinate dehydrogenase cytochrome b-556 subunit [Neisseria
meningitidis WUE 2594]
gi|325128093|gb|EGC50988.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis N1568]
gi|325132169|gb|EGC54865.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis M6190]
gi|325134135|gb|EGC56787.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis M13399]
gi|325136116|gb|EGC58725.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis M0579]
gi|325138101|gb|EGC60674.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis ES14902]
gi|325140162|gb|EGC62689.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis CU385]
gi|325142230|gb|EGC64648.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis 961-5945]
gi|325144260|gb|EGC66565.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis M01-240013]
gi|325198181|gb|ADY93637.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis G2136]
gi|325200367|gb|ADY95822.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis H44/76]
gi|325204020|gb|ADY99473.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis M01-240355]
gi|325206221|gb|ADZ01674.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis M04-240196]
Length = 125
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RP+ L RL VSI+HRI+G +++ P ++++ + E + R +
Sbjct: 4 KPRPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVS 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ ++ L WA +HH L GIR+L D L+ A AK ++++ +++ +
Sbjct: 64 HPLVKLVLIGVLWAYLHHSLAGIRFLFLDAHKGLELNTARNTAKAVFASALVLTVVLGAL 123
>gi|196003862|ref|XP_002111798.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190585697|gb|EDV25765.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 139
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYL-GTPVVVFWFFCIANGEHTLSSL 60
+ + NRP+SPHL IY+ T +SI HR +G ++ ++ +
Sbjct: 15 KNKRLNRPMSPHLTIYKPQLTSMMSITHRASGMILSAYAATFAIYTMSSSGTLAEHIEVW 74
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + V + + + +H + G+R+LIWD+ + + I S+L +
Sbjct: 75 KT-LPAIVPFTLKCGFIFPLYYHAINGVRHLIWDMGKGFNLPTLYKTGYTVIALSLLFGV 133
Query: 121 I 121
+
Sbjct: 134 V 134
>gi|154281033|ref|XP_001541329.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411508|gb|EDN06896.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 226
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ + NRP+SPH+ IY+ T +S++HR TG + + G H S+
Sbjct: 75 LRKQRLNRPVSPHISIYQPQITSVLSLLHRNTGLLSGPFYLFFAAYAASPWLGWHIDSTS 134
Query: 61 RCYMDGSVFEVCLFLY----TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
G++ L H + G+R+L+WD+ K T+ + I SI
Sbjct: 135 MAASFGTLPVAAKVLLKTTAALPFTFHCINGVRHLVWDLGRGFSNKQVTKSGRTVIGLSI 194
Query: 117 LTVLIV 122
+ L++
Sbjct: 195 SSALLL 200
>gi|325202264|gb|ADY97718.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis M01-240149]
gi|325207983|gb|ADZ03435.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis NZ-05/33]
Length = 125
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RP+ L RL VSI+HRI+G +++ P ++++ + E + R +
Sbjct: 4 KPRPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVS 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ ++ L WA +HH L GIR+L D L+ A AK ++++ +++ +
Sbjct: 64 HPLVKLVLIGVLWAYLHHSLAGIRFLFLDAHKGLELNTARNTAKAVFASALVLTVVLGAL 123
>gi|161486280|ref|NP_752728.2| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli CFT073]
gi|218549714|ref|YP_002383505.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia fergusonii ATCC 35469]
gi|218688515|ref|YP_002396727.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli ED1a]
gi|218699076|ref|YP_002406705.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli IAI39]
gi|331656738|ref|ZP_08357700.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
TA206]
gi|218357255|emb|CAQ89890.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia fergusonii ATCC 35469]
gi|218369062|emb|CAR16816.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli IAI39]
gi|218426079|emb|CAR06897.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli ED1a]
gi|222032458|emb|CAP75197.1| Succinate dehydrogenase cytochrome b556 subunit [Escherichia coli
LF82]
gi|281177864|dbj|BAI54194.1| succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
SE15]
gi|284920499|emb|CBG33561.1| succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
042]
gi|331054986|gb|EGI26995.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
TA206]
Length = 129
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ +
Sbjct: 4 NVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASA 63
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASILTVLI 121
M + ++ A+ +H++ GIR+++ D + + + AKI+ + +++ L+
Sbjct: 64 IMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLL 123
Query: 122 VWII 125
++
Sbjct: 124 AGVL 127
>gi|332535002|ref|ZP_08410818.1| succinate dehydrogenase cytochrome b-556 subunit [Pseudoalteromonas
haloplanktis ANT/505]
gi|332035569|gb|EGI72062.1| succinate dehydrogenase cytochrome b-556 subunit [Pseudoalteromonas
haloplanktis ANT/505]
Length = 137
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ L + T SI HR+TG ++ V++ + + ++
Sbjct: 12 TVKKQRPVNLDLTTISMPATAKASIFHRVTGVALFFALTFVIWAWSESLSSAEGFEFVKG 71
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI- 121
+G + + + + +H++GGIR++I D+ + + AK+++ ++ ++
Sbjct: 72 LFNGFIAKFIAWGTVSVLGYHLIGGIRHMIMDMGHWEELESGNLSAKVSMALGVVFAVLA 131
Query: 122 -VWI 124
VWI
Sbjct: 132 GVWI 135
>gi|121712948|ref|XP_001274085.1| succinate dehydrogenase cytochrome b560 subunit [Aspergillus
clavatus NRRL 1]
gi|119402238|gb|EAW12659.1| succinate dehydrogenase cytochrome b560 subunit [Aspergillus
clavatus NRRL 1]
Length = 188
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 5/130 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS- 59
++ + NRP++PHL IYR T S +HRITG + + + L S
Sbjct: 59 LAQQRLNRPVAPHLSIYRPQITWIGSSLHRITGVALSGSLYLFATAYLAAPLFGWHLESA 118
Query: 60 --LRCYMDGSVFEVCLFLYT--WAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ + + L T + ++H L G+R+L+WD+ + + + + +
Sbjct: 119 SLVAAFGALPLAAKVLLKSTAAFPFVYHCLNGVRHLVWDLGRGMTNQQVIKSGWTVVGLT 178
Query: 116 ILTVLIVWII 125
++VL + +
Sbjct: 179 AVSVLTLAFL 188
>gi|225559635|gb|EEH07917.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
capsulatus G186AR]
Length = 215
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI-ANGEHTLSS 59
+ + NRP+SPH+ IYR T +S++HR TG ++ + + G H S+
Sbjct: 79 LRKQRLNRPVSPHISIYRPQITSVLSLLHRNTGLLLSGPFYLFFAAYAASPWLGWHIDST 138
Query: 60 LRCYMDGSVFEVCLFLY----TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
G++ L H + G+R+L+WD+ K T+ + I S
Sbjct: 139 SMAASFGTLPVAAKVLLKTTAALPFTFHCINGVRHLVWDLGRGFSNKQVTKSGRTVIGLS 198
Query: 116 ILTVLIV 122
I + L++
Sbjct: 199 ISSALLL 205
>gi|209917972|ref|YP_002292056.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli SE11]
gi|218553248|ref|YP_002386161.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli IAI1]
gi|260842928|ref|YP_003220706.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O103:H2 str. 12009]
gi|260853956|ref|YP_003227847.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O26:H11 str. 11368]
gi|260866852|ref|YP_003233254.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O111:H- str. 11128]
gi|209911231|dbj|BAG76305.1| succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
SE11]
gi|218360016|emb|CAQ97563.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli IAI1]
gi|257752605|dbj|BAI24107.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O26:H11 str. 11368]
gi|257758075|dbj|BAI29572.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O103:H2 str. 12009]
gi|257763208|dbj|BAI34703.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O111:H- str. 11128]
gi|323153766|gb|EFZ40013.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
EPECa14]
Length = 129
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ +
Sbjct: 4 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFIAVGILLWLLGTSLSSPEGFEQASA 63
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASILTVLI 121
M + ++ A+ +H++ GIR+++ D + + + AKI+ + +++ L+
Sbjct: 64 IMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLL 123
Query: 122 VWII 125
++
Sbjct: 124 AGVL 127
>gi|12832459|dbj|BAB22116.1| unnamed protein product [Mus musculus]
Length = 169
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ +NRPLSPHL IY+ M +S+ HR +G + G + + N E L +
Sbjct: 44 KNTSSNRPLSPHLTIYKWSLPMALSVCHRGSGIALSGGVSLFGLSALLLPGNFESYLMFV 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ G + F+ + +++H L GIR+L+WD+ L
Sbjct: 104 KSLCLGPTLIYSAKFVLVFPLMYHSLNGIRHLLWDLGKGLAIPQVWLSG 152
>gi|77457837|ref|YP_347342.1| succinate dehydrogenase subunit C [Pseudomonas fluorescens Pf0-1]
gi|77381840|gb|ABA73353.1| succinate dehydrogenase cytochrome b556 subunit [Pseudomonas
fluorescens Pf0-1]
Length = 124
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K+ RP++ L+ +L T S +HR++G +++LG ++++ E ++
Sbjct: 1 MKSQRPVNLDLRTIKLPITGVTSFLHRVSGIILFLGLGIMLYALGKSLGSEEGYVEVKAC 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
+ + + + A+++H++ G+R+LI D+ + + +K+ I S++ +++
Sbjct: 61 LTSPLAKFVAWGLLSALLYHLVAGVRHLIMDMGIGETLEGGRLGSKLIIAVSVVLIVLAG 120
Query: 122 VWI 124
VWI
Sbjct: 121 VWI 123
>gi|114563518|ref|YP_751031.1| succinate dehydrogenase, cytochrome b subunit [Shewanella
frigidimarina NCIMB 400]
gi|114334811|gb|ABI72193.1| succinate dehydrogenase subunit C [Shewanella frigidimarina NCIMB
400]
Length = 131
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 57/123 (46%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP+ LQ T SI+HRI+G ++ ++++ +S++
Sbjct: 6 QNVKKQRPVHLDLQTISFPATAIASILHRISGVIMLFAIGILLWLLNSTLTSADGFASVQ 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
DG V + ++ A+ +H+LGGIR+LI D + AK + +++ +I
Sbjct: 66 SLFDGFVMKFIIWGILTALGYHLLGGIRHLIMDAGHWEELASGVSSAKATFVLAVVFSII 125
Query: 122 VWI 124
I
Sbjct: 126 AGI 128
>gi|225717610|gb|ACO14651.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Caligus clemensi]
Length = 173
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 1/121 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+ + NRP+SPHL IY+ T +SI HRI+G + F F + N T
Sbjct: 51 KNKRLNRPMSPHLTIYKPQLTSMLSISHRISGMYLTAILYSGGFLPFVLPNNFPTFIQSI 110
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ F + H G+R+L+WD+ + + S++T +I
Sbjct: 111 EIAP-LLVTAGKFAIAFPFAFHTYNGLRHLLWDMGYGFKISEVYSSGAMVLAFSLITAII 169
Query: 122 V 122
+
Sbjct: 170 L 170
>gi|215485740|ref|YP_002328171.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O127:H6 str. E2348/69]
gi|218557637|ref|YP_002390550.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli S88]
gi|312965151|ref|ZP_07779388.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
2362-75]
gi|215263812|emb|CAS08149.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli O127:H6 str. E2348/69]
gi|218364406|emb|CAR02086.2| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli S88]
gi|312290242|gb|EFR18125.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
2362-75]
Length = 129
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ +
Sbjct: 4 NVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASA 63
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-----KKIATQMAKINIIASIL 117
M + ++ A+ +H++ GIR+++ D + K+ A I ++ S+L
Sbjct: 64 IMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVFSLL 123
Query: 118 TVLIVW 123
++VW
Sbjct: 124 AGVLVW 129
>gi|283784477|ref|YP_003364342.1| succinate dehydrogenase cytochrome b-556 subunit [Citrobacter
rodentium ICC168]
gi|282947931|emb|CBG87495.1| succinate dehydrogenase cytochrome b-556 subunit [Citrobacter
rodentium ICC168]
Length = 134
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ +
Sbjct: 9 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFQQASA 68
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASILTVLI 121
M + ++ A+ +H++GG+R++ D + + + AKI + +++ L+
Sbjct: 69 IMGSFFVKFIMWGILTALAYHVVGGVRHMFMDFGYLEETFEAGQRSAKIAFVITVVLSLL 128
Query: 122 VWII 125
++
Sbjct: 129 AGVL 132
>gi|56752597|gb|AAW24512.1| SJCHGC05423 protein [Schistosoma japonicum]
gi|226489330|emb|CAX75809.1| succinate dehydrogenase complex, subunit C, integral membrane
protein [Schistosoma japonicum]
gi|226489332|emb|CAX75810.1| succinate dehydrogenase complex, subunit C, integral membrane
protein [Schistosoma japonicum]
gi|226489334|emb|CAX75811.1| succinate dehydrogenase complex, subunit C, integral membrane
protein [Schistosoma japonicum]
gi|226489336|emb|CAX75812.1| succinate dehydrogenase complex, subunit C, integral membrane
protein [Schistosoma japonicum]
gi|226489338|emb|CAX75813.1| succinate dehydrogenase complex, subunit C, integral membrane
protein [Schistosoma japonicum]
gi|226489340|emb|CAX75814.1| succinate dehydrogenase complex, subunit C, integral membrane
protein [Schistosoma japonicum]
Length = 192
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 2/127 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVY-LGTPVVVFWFFCIANGEHTLSSL 60
+I RP SPHLQIY M S +HR TG + + + V + FF + + L +
Sbjct: 65 KNITGGRPWSPHLQIYSAPLVMRFSFLHRATGIAMAIVWSSVGIGAFFFTGHYDSVLDYV 124
Query: 61 -RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
++ +V C F+ + +++H L G+R+L WD ++ K + I + +S++
Sbjct: 125 KNMHLGDTVITACKFVLCYPLVYHYLNGMRHLAWDYAIGFPIKTCNKTGFIALGSSLVVA 184
Query: 120 LIVWIIK 126
I+ I+
Sbjct: 185 AILACIR 191
>gi|330503170|ref|YP_004380039.1| succinate dehydrogenase subunit C [Pseudomonas mendocina NK-01]
gi|328917456|gb|AEB58287.1| succinate dehydrogenase subunit C [Pseudomonas mendocina NK-01]
Length = 124
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 66/121 (54%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L+ +L T + SI+HRI+G ++++G +++F E + ++
Sbjct: 1 MNSQRPVNLDLRTIKLPVTAYTSILHRISGVILFVGIAILLFGLDKSLTSEEGFAQVKEC 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + + ++ A+++H++ G+R+LI D+ + + +KI I + + ++++
Sbjct: 61 LTSPLAKFVIWGLLSALLYHLVAGVRHLIMDMGIGETLEGGKLGSKIVIAVAAVVIVLLG 120
Query: 124 I 124
+
Sbjct: 121 V 121
>gi|313668609|ref|YP_004048893.1| succinate dehydrogenase cytochrome B subunit [Neisseria lactamica
ST-640]
gi|313006071|emb|CBN87532.1| putative succinate dehydrogenase cytochrome B subunit [Neisseria
lactamica 020-06]
Length = 125
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 58/120 (48%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RP+ L RL VSI+HRI+G +++ P ++++ + E + R +
Sbjct: 4 KPRPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVS 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ ++ L WA +HH L GIR+L D L+ A AK+ A+++ +++ +
Sbjct: 64 HPLVKLVLIGVLWAYLHHSLAGIRFLFLDAHKGLELNTARNTAKLVFTAALVLTVVLGAL 123
>gi|104782665|ref|YP_609163.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
entomophila L48]
gi|95111652|emb|CAK16373.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
entomophila L48]
Length = 128
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 58/108 (53%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K+ RP++ L+ +L T + SI+HRI+G +++LG ++++ E + ++
Sbjct: 3 KAVKSQRPVNLDLRTIKLPITAYTSILHRISGVILFLGLAIMLYALGKSLGSEEGFAEVK 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
+ + ++ + +++H++ G+R+LI D+ + + +K
Sbjct: 63 ACLTSPLAKLVTWGLLSGLLYHLVAGVRHLIMDMGIGETLEGGKLGSK 110
>gi|237730685|ref|ZP_04561166.1| succinate dehydrogenase cytochrome b-556 subunit [Citrobacter sp.
30_2]
gi|226906224|gb|EEH92142.1| succinate dehydrogenase cytochrome b-556 subunit [Citrobacter sp.
30_2]
Length = 146
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 21 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFLTASS 80
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASILTVLI 121
M+ E+ L+ A+ +H + GIR+L+ D + + T+ AKI + ++ L+
Sbjct: 81 IMNNFFVELILWGILIALAYHAVMGIRHLLMDFGYIEETLEAGTRSAKICFVIIVVLSLL 140
Query: 122 VWII 125
++
Sbjct: 141 AGVL 144
>gi|329903473|ref|ZP_08273492.1| Succinate dehydrogenase cytochrome b-556 subunit [Oxalobacteraceae
bacterium IMCC9480]
gi|327548348|gb|EGF33033.1| Succinate dehydrogenase cytochrome b-556 subunit [Oxalobacteraceae
bacterium IMCC9480]
Length = 136
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 1 MSSI-KNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE 54
MS + K NRP ++ + YRL +SI+HRI+G +++ PV+++ E
Sbjct: 1 MSEVTKTNRPEFRNIHVTQLANYRLPLAGLISILHRISGFLMFALLPVILYLLDQSLLSE 60
Query: 55 HTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
T + ++ L +WA +HH GIR+L D + ++K A + A I
Sbjct: 61 GTFEYFKGITSNWFVKLVLLAVSWAFLHHFCAGIRHLFMDNHIGIEKDSARKSAVIVFAV 120
Query: 115 SILTVLIVWI 124
S+ +V +
Sbjct: 121 SLPLAGLVAL 130
>gi|90021755|ref|YP_527582.1| succinate dehydrogenase subunit C [Saccharophagus degradans 2-40]
gi|89951355|gb|ABD81370.1| succinate dehydrogenase subunit C [Saccharophagus degradans 2-40]
Length = 124
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ NRP++ + RL T VSI HR+TG V+ G +++ E + + L+
Sbjct: 1 MNKNRPVNLDISTMRLPITALVSITHRVTGVVLLAGILGLIWMLDLSLASEESFNQLKDC 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
+ ++ L A+ +H++ G+R+LI D+ + K+ AKI + S++ +++
Sbjct: 61 LAQPFVKIALIAVLAALAYHLVAGVRHLIMDLGIGESKEGGKLGAKIAVALSVVLIVLMG 120
Query: 122 VWI 124
+W+
Sbjct: 121 IWV 123
>gi|169780850|ref|XP_001824889.1| cytochrome B-560 subunit of succinate dehydrogenase [Aspergillus
oryzae RIB40]
gi|238504946|ref|XP_002383702.1| succinate dehydrogenase cytochrome b560 subunit [Aspergillus flavus
NRRL3357]
gi|83773629|dbj|BAE63756.1| unnamed protein product [Aspergillus oryzae]
gi|220689816|gb|EED46166.1| succinate dehydrogenase cytochrome b560 subunit [Aspergillus flavus
NRRL3357]
Length = 188
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI-ANGEHTLSS 59
++ + NRP+SPHL IYR T S HRITG + + + G H S+
Sbjct: 59 LAQQRLNRPVSPHLSIYRPQITWIGSSFHRITGFALSGSLYLYATAYLASPLLGWHLESA 118
Query: 60 LRCYMDGSVFEVCLFLY----TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
++ V L +H G+R+L+WD+ + + + + S
Sbjct: 119 SVAAAFAALPIVAKVLLKGFMALPFTYHCFNGVRHLVWDLGRGITNQQVIKSGWTVVGLS 178
Query: 116 ILTVLIVWII 125
+L+ L + +
Sbjct: 179 VLSALALAFL 188
>gi|195157732|ref|XP_002019750.1| GL12041 [Drosophila persimilis]
gi|198455279|ref|XP_002138040.1| GA19764 [Drosophila pseudoobscura pseudoobscura]
gi|194116341|gb|EDW38384.1| GL12041 [Drosophila persimilis]
gi|198133177|gb|EDY68598.1| GA19764 [Drosophila pseudoobscura pseudoobscura]
Length = 152
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT-PVVVFWFFCIANGEHTLSSL 60
+ + R LSPHL IY+ T +S++HR TG + +G + + + H ++ +
Sbjct: 27 KNARLGRELSPHLSIYQPQLTSILSVMHRGTGMALGVGVWALGLGALISSHDISHYVTMV 86
Query: 61 RCY-MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G+ F+ + +H GIR+L WD L K + AS +
Sbjct: 87 EGLQLSGATLTALKFIIAYPAGYHTANGIRHLFWDTGRFLKIKEVYSTGYAMVAASFVLT 146
Query: 120 LIVWII 125
I+ +I
Sbjct: 147 AILALI 152
>gi|170722680|ref|YP_001750368.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
putida W619]
gi|169760683|gb|ACA73999.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
putida W619]
Length = 128
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 57/108 (52%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K+ RP++ L+ +L T + SI+HRI+G +++LG ++++ E ++
Sbjct: 3 KAVKSQRPVNLDLRTIKLPVTAYTSILHRISGVILFLGLAIMLYALGKSLGSEEGFGEVK 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
+ + + + A+++H++ G+R+LI D+ + + +K
Sbjct: 63 ACLTSPLAKFVTWGLLSALLYHLVAGVRHLIMDMGIGETLEGGKLGSK 110
>gi|293432990|ref|ZP_06661418.1| succinate dehydrogenase [Escherichia coli B088]
gi|309786385|ref|ZP_07681011.1| succinate dehydrogenase, cytochrome b556 subunit [Shigella
dysenteriae 1617]
gi|291323809|gb|EFE63231.1| succinate dehydrogenase [Escherichia coli B088]
gi|308925779|gb|EFP71260.1| succinate dehydrogenase, cytochrome b556 subunit [Shigella
dysenteriae 1617]
Length = 125
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ R T SI+HR++G + ++ ++++ +
Sbjct: 1 MKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAI 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASILTVLIV 122
M + ++ A+ +H++ GIR+++ D + + + AKI+ + +++ L+
Sbjct: 61 MGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLA 120
Query: 123 WII 125
++
Sbjct: 121 GVL 123
>gi|16759671|ref|NP_455288.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhi str.
CT18]
gi|16764102|ref|NP_459717.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|29142556|ref|NP_805898.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhi str.
Ty2]
gi|56414151|ref|YP_151226.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Paratyphi A
str. ATCC 9150]
gi|62179307|ref|YP_215724.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|197363073|ref|YP_002142710.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Paratyphi A
str. AKU_12601]
gi|205351996|ref|YP_002225797.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Gallinarum
str. 287/91]
gi|207856176|ref|YP_002242827.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Enteritidis
str. P125109]
gi|224582547|ref|YP_002636345.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Paratyphi C
strain RKS4594]
gi|54036973|sp|P63726|DHSC_SALTI RecName: Full=Succinate dehydrogenase cytochrome b556 subunit;
Short=Cytochrome b-556
gi|54040872|sp|P63725|DHSC_SALTY RecName: Full=Succinate dehydrogenase cytochrome b556 subunit;
Short=Cytochrome b-556
gi|25284651|pir||AH0590 succinate dehydrogenase cytochrome b-556 chain [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16419242|gb|AAL19676.1| succinate dehydrogenase, cytochrome b556 [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|16501964|emb|CAD05194.1| succinate dehydrogenase cytochrome b-556 subunit [Salmonella
enterica subsp. enterica serovar Typhi]
gi|29138187|gb|AAO69758.1| succinate dehydrogenase cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Typhi str. Ty2]
gi|56128408|gb|AAV77914.1| succinate dehydrogenase cytochrome b-556 subunit [Salmonella
enterica subsp. enterica serovar Paratyphi A str. ATCC
9150]
gi|62126940|gb|AAX64643.1| succinate dehydrogenase, cytochrome b556 [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|197094550|emb|CAR60070.1| succinate dehydrogenase cytochrome b-556 subunit [Salmonella
enterica subsp. enterica serovar Paratyphi A str.
AKU_12601]
gi|205271777|emb|CAR36611.1| succinate dehydrogenase cytochrome b-556 subunit [Salmonella
enterica subsp. enterica serovar Gallinarum str. 287/91]
gi|206707979|emb|CAR32268.1| succinate dehydrogenase cytochrome b-556 subunit [Salmonella
enterica subsp. enterica serovar Enteritidis str.
P125109]
gi|224467074|gb|ACN44904.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Paratyphi C
strain RKS4594]
gi|261245995|emb|CBG23797.1| succinate dehydrogenase cytochrome b-556 subunit [Salmonella
enterica subsp. enterica serovar Typhimurium str.
D23580]
gi|267992470|gb|ACY87355.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhimurium
str. 14028S]
gi|301157323|emb|CBW16812.1| succinate dehydrogenase cytochrome b-556 subunit [Salmonella
enterica subsp. enterica serovar Typhimurium str.
SL1344]
gi|322713775|gb|EFZ05346.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
gi|323129042|gb|ADX16472.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhimurium
str. 4/74]
gi|326622456|gb|EGE28801.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Dublin str.
3246]
gi|326627036|gb|EGE33379.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Gallinarum
str. 9]
gi|332987669|gb|AEF06652.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhimurium
str. UK-1]
Length = 129
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ +
Sbjct: 4 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFIAVGILLWLLGTSLSSPEGFQQAAD 63
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASILTVLI 121
MDG + + ++ A+ +H++ GIR+++ D + + + AKI+ + +++ L+
Sbjct: 64 IMDGFIVKFIMWGILTALAYHVIVGIRHMLMDFGYLEETFEAGQRSAKISFVITVVLSLL 123
Query: 122 VWII 125
++
Sbjct: 124 AGVL 127
>gi|149759773|ref|XP_001503815.1| PREDICTED: similar to succinate dehydrogenase complex, subunit C
[Equus caballus]
Length = 169
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+I +NRP+SPH+ IY M +SI HR TG + G + + N E L +
Sbjct: 44 KNIGSNRPMSPHITIYSWSLPMVMSICHRGTGIALSAGVSLFGLSALLVPGNFESHLELV 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQ 106
+ G + F + +++H GIR+LIWD+ L Q
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLIWDLGKGLKIPQLYQ 150
>gi|110834361|ref|YP_693220.1| succinate dehydrogenase, cytochrome b556 subunit [Alcanivorax
borkumensis SK2]
gi|110647472|emb|CAL16948.1| succinate dehydrogenase, cytochrome b556 subunit [Alcanivorax
borkumensis SK2]
Length = 125
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L + T SI HR+TG ++L P++++ + + L+
Sbjct: 1 MNDKRPVNLDLSTIKFPVTAIASITHRVTGVAIFLALPILLWMLDRSLTSPESFADLKEL 60
Query: 64 -MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
M + ++ ++ +++H++ GIR+LI D + + + AK+ + S++ +L+V
Sbjct: 61 MMTSLLVKLVVWAILSVLLYHLVAGIRHLIMDAGVGESLEGGRRGAKLTFLISVVLILLV 120
>gi|296818369|ref|XP_002849521.1| succinate dehydrogenase cytochrome b560 subunit [Arthroderma otae
CBS 113480]
gi|238839974|gb|EEQ29636.1| succinate dehydrogenase cytochrome b560 subunit [Arthroderma otae
CBS 113480]
Length = 197
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 7/130 (5%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV-----YLGTPVVVFWFFCIANGEH 55
+++ + RPLSPHL IY+ T S + RITG V+ G + +F
Sbjct: 67 LAAQRLKRPLSPHLAIYKWQVTSVNSSLQRITGVVLSGGLYLFGISYLASSYFGWGLSSE 126
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+LS+ + S F+ W ++ H +R+L WD+ K Q ++ S
Sbjct: 127 SLSAAMASLPWSGKAAVKFVIAWPLMFHTFNNLRHLAWDMGKGFAMKTVCQTGYLSAGMS 186
Query: 116 ILTV--LIVW 123
I+ + +W
Sbjct: 187 IIVAAGVALW 196
>gi|261364266|ref|ZP_05977149.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria mucosa
ATCC 25996]
gi|288567509|gb|EFC89069.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria mucosa
ATCC 25996]
Length = 125
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 59/120 (49%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RP+ + RL VSI+HRI+G +++ PV+++ + E + R +
Sbjct: 4 KPRPVFLEIPNIRLPIPGIVSILHRISGVALFVMLPVLLYLLSGTLSRESAFETYRAIVS 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ ++ L WA +HH+ GIR+L+ D L+ A AK+ A+++ +++ +
Sbjct: 64 NPLVKLILIGVLWAYLHHLFAGIRFLLLDAHKGLELNTARNTAKLVFAAALVLTVVLGAL 123
>gi|109898115|ref|YP_661370.1| succinate dehydrogenase, cytochrome b subunit [Pseudoalteromonas
atlantica T6c]
gi|109700396|gb|ABG40316.1| succinate dehydrogenase subunit C [Pseudoalteromonas atlantica T6c]
Length = 124
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 52/111 (46%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ L P SI+HRITG ++ V++ + + + ++
Sbjct: 1 MKKQRPVNLQLNTISFPPAAITSILHRITGVAMFFALLFVIWAWAESVSSPDGFAFVQEQ 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
M G + ++ A+ +H+LGG+R+L+ D+ + + AKI I
Sbjct: 61 MSGVIGKIIAIATISALTYHILGGLRHLVMDMGYWEELESGNISAKIVIGL 111
>gi|195111370|ref|XP_002000252.1| GI22625 [Drosophila mojavensis]
gi|193916846|gb|EDW15713.1| GI22625 [Drosophila mojavensis]
Length = 152
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT-PVVVFWFFCIANGEHTLSSL 60
+ + R +SPHL IY+ T +S++HR TG V+ LG + + + H ++ +
Sbjct: 27 KNQRLGREMSPHLTIYKPQLTSLLSVMHRGTGLVLGLGVWGLGIGALVASQDISHYVTMV 86
Query: 61 RCY-MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G+ F+ + +H G+R+L+WD L K + + S +
Sbjct: 87 EGLQLSGASLTAIKFILAYPFGYHAANGVRHLLWDTGRFLKIKEVYSTGYVMVATSFVLT 146
Query: 120 LIVWII 125
I+ ++
Sbjct: 147 AILALL 152
>gi|261377703|ref|ZP_05982276.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria cinerea
ATCC 14685]
gi|269145976|gb|EEZ72394.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria cinerea
ATCC 14685]
Length = 125
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+RP+ L RL VSI+HRI+G +++ P ++++ + E + R +
Sbjct: 4 KSRPVYLDLPKIRLPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRSIIS 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ ++ L WA +HH GIR+L D L+ A AK ++++ +++ +
Sbjct: 64 HPLVKLILLGVLWAYLHHFFAGIRFLFLDAHKGLELNTARNTAKAVFASALVLTVVLGAL 123
>gi|228008307|ref|NP_079597.2| succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Mus musculus]
gi|21362402|sp|Q9CZB0|C560_MOUSE RecName: Full=Succinate dehydrogenase cytochrome b560 subunit,
mitochondrial; AltName: Full=Integral membrane protein
CII-3; AltName: Full=QPs-1; Short=QPs1; Flags: Precursor
gi|12849813|dbj|BAB28491.1| unnamed protein product [Mus musculus]
gi|26328275|dbj|BAC27878.1| unnamed protein product [Mus musculus]
gi|74183258|dbj|BAE22557.1| unnamed protein product [Mus musculus]
Length = 169
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ +NRPLSPHL IY+ M +S+ HR +G + G + + N E L +
Sbjct: 44 KNTSSNRPLSPHLTIYKWSLPMALSVCHRGSGIALSGGVSLFGLSALLLPGNFESYLMFV 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ G + F+ + +++H L GIR+L+WD+ L
Sbjct: 104 KSLCLGPTLIYSAKFVLVFPLMYHSLNGIRHLLWDLGKGLAIPQVWLSG 152
>gi|148707186|gb|EDL39133.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, isoform CRA_b [Mus musculus]
Length = 169
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ +NRPLSPHL IY+ M +S+ HR +G + G + + N E L +
Sbjct: 44 KNTSSNRPLSPHLTIYKWSLPMALSVCHRGSGIALSGGVSLFGLSALLLPGNFESYLMFV 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ G + F+ + +++H L GIR+L+WD+ L
Sbjct: 104 KSLCLGPTLIYSAKFVLVFPLMYHSLNGIRHLLWDLGKGLAIPQVWLSG 152
>gi|13543226|gb|AAH05779.1| Sdhc protein [Mus musculus]
Length = 169
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ +NRPLSPHL IY+ M +S+ HR +G + G + + N E L +
Sbjct: 44 KNTSSNRPLSPHLTIYKWSLPMALSVCHRGSGIALSGGVSLFGLSALVLPGNFESYLMFV 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ G + F+ + +++H L GIR+L+WD+ L
Sbjct: 104 KSLCLGPTLIYSAKFVLVFPLMYHSLNGIRHLLWDLGKGLAIPQVWLSG 152
>gi|256021205|ref|ZP_05435070.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Shigella sp. D9]
gi|307314814|ref|ZP_07594408.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
W]
gi|332282431|ref|ZP_08394844.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Shigella sp. D9]
gi|306905712|gb|EFN36240.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
W]
gi|315059964|gb|ADT74291.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Escherichia coli W]
gi|323379476|gb|ADX51744.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
KO11]
gi|332104783|gb|EGJ08129.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Shigella sp. D9]
Length = 134
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ +
Sbjct: 9 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASA 68
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-----KKIATQMAKINIIASIL 117
M + ++ A+ +H++ GIR+++ D + K+ A I ++ S+L
Sbjct: 69 IMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKTSFVITVVLSLL 128
Query: 118 TVLIVW 123
++VW
Sbjct: 129 AGVLVW 134
>gi|90411595|ref|ZP_01219605.1| putative succinate dehydrogenase; fumarate reductase, cytochrome
bsubunit [Photobacterium profundum 3TCK]
gi|90327485|gb|EAS43838.1| putative succinate dehydrogenase; fumarate reductase, cytochrome
bsubunit [Photobacterium profundum 3TCK]
Length = 126
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 54/118 (45%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ R T SI+HR++G + ++ ++++ + +S
Sbjct: 3 VKKPRPVNLDLQTIRFPLTAIASILHRVSGVITFVSVAILLWLLNISLSSPEGFASAASI 62
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
D + L+ A+ +H++ G+R+LI D+ + + K++ + + +
Sbjct: 63 ADSFFVKFILWGVLTALFYHIVVGVRHLIMDMGYFEEMETGIASTKVSFVIVAVLSVF 120
>gi|53237071|gb|AAH83091.1| Succinate dehydrogenase complex, subunit C, integral membrane
protein [Mus musculus]
Length = 169
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ +NRPLSPHL IY+ M +S+ HR +G + G + + N E L +
Sbjct: 44 KNTSSNRPLSPHLTIYKWSLPMALSVCHRGSGIALSGGVSLFGLSALLLPGNFESYLMFV 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ G + F+ + +++H L GIR+L+WD+ L
Sbjct: 104 KSLCLGPTLIYSAKFVLVFPLMYHSLNGIRHLLWDLGKGLAIPQVWLSG 152
>gi|123443162|ref|YP_001007136.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia enterocolitica subsp. enterocolitica 8081]
gi|122090123|emb|CAL12986.1| succinate dehydrogenase cytochrome b-556 subunit [Yersinia
enterocolitica subsp. enterocolitica 8081]
Length = 129
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 3 KTVKKQRPVNLDLQTIRFPVTAIASILHRVSGVMTFVAVGILLWLLGLSVSSQEGFMQAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASILTVL 120
M+ + + A+ +H+ GGIR+L+ D + T+ A++ ++ +++ +
Sbjct: 63 AVMNSFFVKFIFWGILTALAYHVCGGIRHLLMDFGYVEESLAAGTRSAQVVMVLTLVLSV 122
Query: 121 IVWII 125
+ ++
Sbjct: 123 LAGVL 127
>gi|119572986|gb|EAW52601.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa, isoform CRA_d [Homo sapiens]
Length = 150
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+I +NRPLSPH+ IY M +SI HR TG + G + + N E L +
Sbjct: 25 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 84
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ G + F + +++H GIR+L+WD+ L Q
Sbjct: 85 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 133
>gi|162939|gb|AAA21608.1| cytochrome b-560 [Bos taurus]
Length = 132
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ NRPLSPH+ IY M +SI HR TG + G + + + E L +
Sbjct: 7 KNTTLNRPLSPHISIYGWSLPMAMSICHRGTGIALSAGVSLFGLSALLVPGSFESHLEFV 66
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G + F + +++H GIR+L+WD+ L Q ++ ++L+
Sbjct: 67 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLTISQLHQSGVAVLVLTVLSS 126
Query: 120 LIVWII 125
+ + +
Sbjct: 127 VGLAAM 132
>gi|315497255|ref|YP_004086059.1| succinate dehydrogenase, cytochrome b556 subunit [Asticcacaulis
excentricus CB 48]
gi|315415267|gb|ADU11908.1| succinate dehydrogenase, cytochrome b556 subunit [Asticcacaulis
excentricus CB 48]
Length = 143
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-----EHTLSSLRC 62
RPLSPHLQ+++ TMF SI+HR TG +G +V W I +
Sbjct: 12 RPLSPHLQVWKFHITMFTSILHRATGIASVVGAVMVAAWLLAIGLTASGHCPEAYTLFLS 71
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ F T A H+ GG+R+LIWD+ L A +A +++ I L
Sbjct: 72 FAASPFGLFVWFGLTLAGFIHLTGGLRHLIWDMGLGFKISSANALAWWSLLGGIALTLAF 131
Query: 123 WII 125
W +
Sbjct: 132 WAV 134
>gi|26990885|ref|NP_746310.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
putida KT2440]
gi|148546899|ref|YP_001267001.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
putida F1]
gi|167034759|ref|YP_001669990.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
putida GB-1]
gi|325275376|ref|ZP_08141322.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas sp.
TJI-51]
gi|24985898|gb|AAN69774.1|AE016613_9 succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
putida KT2440]
gi|148510957|gb|ABQ77817.1| succinate dehydrogenase subunit C [Pseudomonas putida F1]
gi|166861247|gb|ABY99654.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
putida GB-1]
gi|313497961|gb|ADR59327.1| SdhC [Pseudomonas putida BIRD-1]
gi|324099493|gb|EGB97393.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas sp.
TJI-51]
Length = 128
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 57/108 (52%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K+ RP++ L+ +L T + SI+HRI+G ++++G ++++ E ++
Sbjct: 3 KAVKSQRPVNLDLRTIKLPVTAYTSILHRISGVILFIGLAIMLYALGKSLGSEEGFGEVK 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
+ + + + A+++H++ G+R+LI D+ + + +K
Sbjct: 63 ACLTSPLAKFVTWGLLSALLYHLVAGVRHLIMDMGIGETLEGGKLGSK 110
>gi|312884960|ref|ZP_07744650.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio caribbenthicus ATCC BAA-2122]
gi|309367437|gb|EFP94999.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio caribbenthicus ATCC BAA-2122]
Length = 130
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 63/121 (52%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HRI+G + ++ ++++ + + +
Sbjct: 8 RKSRPVNLDLQTIRFPITAIASILHRISGVITFVAIGILLWLLSISLSSPVGYAQAASLV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
DG + ++ A+ +H++GGIR+L+ D+ + + AK++ +A+I+ ++ +
Sbjct: 68 DGFFVKFIIWGILTALAYHIVGGIRHLLMDMGHFEELESGAMSAKVSFVATIVLSVLAGV 127
Query: 125 I 125
+
Sbjct: 128 M 128
>gi|320034179|gb|EFW16124.1| succinate dehydrogenase [Coccidioides posadasii str. Silveira]
Length = 186
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVV-FWFFCIANGEHTLSS 59
++ + NRP+SPHL IYR + ++S ++RITGSV+ G V + A G H S+
Sbjct: 57 LAQQRLNRPVSPHLTIYRPQISWYLSALNRITGSVLSGGLYVFATAYLVAPAIGWHLESA 116
Query: 60 LRCYMDGSVFEVCLF----LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
G++ F H + G+R+LIWD+ L K + S
Sbjct: 117 SLAAAFGALPLAAKFAIKLGVAMPFTFHCMNGVRHLIWDLGKKLSNKEVIATGWTVVGLS 176
Query: 116 ILTVLIVWII 125
+ + + +I
Sbjct: 177 MASAFALALI 186
>gi|260811592|ref|XP_002600506.1| hypothetical protein BRAFLDRAFT_119291 [Branchiostoma floridae]
gi|229285793|gb|EEN56518.1| hypothetical protein BRAFLDRAFT_119291 [Branchiostoma floridae]
Length = 181
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 6/124 (4%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVY-----LGTPVVVFWFFCIANGEHT 56
+ + RP+SPHL IY+ T +SI HR TG+ + ++V +
Sbjct: 51 KNAQKKRPMSPHLTIYKPQLTAMLSITHRGTGAAMAGFVYAFSVGMLVVNPLLGWDFPTI 110
Query: 57 LSSLRCY-MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ ++ + + + W + +H + GIR+L WD D K+ + S
Sbjct: 111 FNFIKSLEIHPWLILGGKWCMAWPISYHAMNGIRHLNWDAGYGFDMKVLYRSGWFVFFGS 170
Query: 116 ILTV 119
L
Sbjct: 171 FLLA 174
>gi|254480479|ref|ZP_05093726.1| succinate dehydrogenase, cytochrome b556 subunit [marine gamma
proteobacterium HTCC2148]
gi|214039062|gb|EEB79722.1| succinate dehydrogenase, cytochrome b556 subunit [marine gamma
proteobacterium HTCC2148]
Length = 129
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
S +K+NRP++ + RL T + SI HR TG ++++G ++++ G + ++
Sbjct: 4 SKVKDNRPVNLDIGTMRLPITAWASITHRATGVILFVGMGILLWLLDTSLAGPDGFAFVQ 63
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ G V + ++ A+I+H L G+++LI D + + A+I I S++ L+
Sbjct: 64 ESLGGFVAKFVIWGLVTALIYHSLAGVKHLIMDFGVGETMEGGILGARIVIALSVVLSLL 123
Query: 122 --VWI 124
+WI
Sbjct: 124 TVIWI 128
>gi|22126947|ref|NP_670370.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia pestis KIM 10]
gi|45440881|ref|NP_992420.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia pestis biovar Microtus str. 91001]
gi|51595487|ref|YP_069678.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia pseudotuberculosis IP 32953]
gi|108806584|ref|YP_650500.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia pestis Antiqua]
gi|108813049|ref|YP_648816.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia pestis Nepal516]
gi|145599853|ref|YP_001163929.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia pestis Pestoides F]
gi|149366891|ref|ZP_01888925.1| succinate dehydrogenase cytochrome b-556 subunit [Yersinia pestis
CA88-4125]
gi|162418632|ref|YP_001605906.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia pestis Angola]
gi|165924731|ref|ZP_02220563.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165938394|ref|ZP_02226952.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Orientalis str. IP275]
gi|166011605|ref|ZP_02232503.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166211616|ref|ZP_02237651.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Antiqua str. B42003004]
gi|167399739|ref|ZP_02305257.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167419466|ref|ZP_02311219.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167424337|ref|ZP_02316090.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|167468943|ref|ZP_02333647.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
FV-1]
gi|170025194|ref|YP_001721699.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia pseudotuberculosis YPIII]
gi|186894540|ref|YP_001871652.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia pseudotuberculosis PB1/+]
gi|218928277|ref|YP_002346152.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia pestis CO92]
gi|229903490|ref|ZP_04518603.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Yersinia pestis Nepal516]
gi|21959988|gb|AAM86621.1|AE013908_4 succinate dehydrogenase, cytochrome b556 [Yersinia pestis KIM 10]
gi|45435739|gb|AAS61297.1| succinate dehydrogenase cytochrome b-556 subunit [Yersinia pestis
biovar Microtus str. 91001]
gi|51588769|emb|CAH20383.1| succinate dehydrogenase cytochrome b-556 subunit [Yersinia
pseudotuberculosis IP 32953]
gi|108776697|gb|ABG19216.1| succinate dehydrogenase subunit C [Yersinia pestis Nepal516]
gi|108778497|gb|ABG12555.1| succinate dehydrogenase subunit C [Yersinia pestis Antiqua]
gi|115346888|emb|CAL19775.1| succinate dehydrogenase cytochrome b-556 subunit [Yersinia pestis
CO92]
gi|145211549|gb|ABP40956.1| succinate dehydrogenase subunit C [Yersinia pestis Pestoides F]
gi|149291265|gb|EDM41340.1| succinate dehydrogenase cytochrome b-556 subunit [Yersinia pestis
CA88-4125]
gi|162351447|gb|ABX85395.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
Angola]
gi|165913772|gb|EDR32391.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Orientalis str. IP275]
gi|165923791|gb|EDR40923.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165989553|gb|EDR41854.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166207387|gb|EDR51867.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Antiqua str. B42003004]
gi|166962207|gb|EDR58228.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167050447|gb|EDR61855.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167057186|gb|EDR66949.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|169751728|gb|ACA69246.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia
pseudotuberculosis YPIII]
gi|186697566|gb|ACC88195.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia
pseudotuberculosis PB1/+]
gi|229679260|gb|EEO75363.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Yersinia pestis Nepal516]
Length = 129
Score = 110 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 3 KTVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSVSSQEGFMQAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKI----NIIASI 116
M+ + + A+ +H+ GGIR+L+ D + + T+ A++ ++ S+
Sbjct: 63 TIMNSFFVKFIFWGILTALAYHICGGIRHLLMDFGYLEENLAVGTRSAQVAMGLTLVLSV 122
Query: 117 LTVLIVW 123
L ++VW
Sbjct: 123 LAGVLVW 129
>gi|149191108|ref|ZP_01869367.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio shilonii AK1]
gi|148835036|gb|EDL52014.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio shilonii AK1]
Length = 126
Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 62/121 (51%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HR++G + ++ ++++ + + +
Sbjct: 4 RKSRPVNLDLQTIRFPITAIASILHRVSGVITFVSIGILLWLLSKSLSSPIGFAEAADIV 63
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
DG + L+ A+ +H++GG+R+LI D+ + + T+ AK+ I + + L+ +
Sbjct: 64 DGFFVKFILWGILTALAYHIVGGVRHLIMDLGYFEELESGTKSAKVAFIVTGVLSLLAGV 123
Query: 125 I 125
+
Sbjct: 124 L 124
>gi|319637649|ref|ZP_07992415.1| succinate dehydrogenase cytochrome B subunit [Neisseria mucosa
C102]
gi|317400804|gb|EFV81459.1| succinate dehydrogenase cytochrome B subunit [Neisseria mucosa
C102]
Length = 125
Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+RP+ + RL VSI+HRI+G ++L PV+++ F + E + + R +
Sbjct: 4 KSRPVFLEIPNIRLPIPGIVSILHRISGVGLFLMLPVLLYLFSGTLDRESSFEAYRSVIS 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
++ L WA +HH+ GIR+L D L+ A AK ++++ +++ +
Sbjct: 64 NPFVKLILIGLLWAYLHHLFAGIRFLFLDAHKGLELNTARNTAKAVFASALVLTVVLGAL 123
>gi|297183595|gb|ADI19722.1| hypothetical protein [uncultured bacterium EB000_36F02]
Length = 127
Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 58/123 (47%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
++N PLSPH+QIY + +SI HRITG + L ++ W + GE ++ +
Sbjct: 1 MENKNPLSPHIQIYSWNISSLISISHRITGVINILALTLICLWIVLLLLGEVNYEYIKFF 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + + + W+ +L IR+L WD+ + + I I S + ++++
Sbjct: 61 LQSFLGKFLILCLIWSFSFQILSEIRHLFWDLGYGFELMTSKITGLIVIFGSFVLTILIY 120
Query: 124 IIK 126
I
Sbjct: 121 FIG 123
>gi|50120296|ref|YP_049463.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Pectobacterium atrosepticum SCRI1043]
gi|49610822|emb|CAG74267.1| succinate dehydrogenase cytochrome b-556 subunit [Pectobacterium
atrosepticum SCRI1043]
Length = 129
Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
S+K RP++ LQ + T SI+HR++G + ++ ++++ + E
Sbjct: 3 KSVKKQRPVNLELQTIQFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSEEGFLRAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-----KKIATQMAKINIIASI 116
MD + + ++ A+ +H++GGIR+L+ D + K+ A I ++ SI
Sbjct: 63 EIMDSFIVKFIVWGILVALAYHIVGGIRHLLMDFGYIEEDLAAGKRSANLSFIITVVLSI 122
Query: 117 LTVLIVW 123
L ++VW
Sbjct: 123 LAGVLVW 129
>gi|157154902|ref|YP_001461881.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli E24377A]
gi|157160201|ref|YP_001457519.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli HS]
gi|168750652|ref|ZP_02775674.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4113]
gi|168757174|ref|ZP_02782181.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4401]
gi|168764002|ref|ZP_02789009.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4501]
gi|168767161|ref|ZP_02792168.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4486]
gi|168779204|ref|ZP_02804211.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4076]
gi|168786874|ref|ZP_02811881.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC869]
gi|168801370|ref|ZP_02826377.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC508]
gi|170020934|ref|YP_001725888.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli ATCC 8739]
gi|187730828|ref|YP_001879375.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Shigella boydii CDC 3083-94]
gi|188495042|ref|ZP_03002312.1| succinate dehydrogenase cytochrome b556 subunit [Escherichia coli
53638]
gi|191167211|ref|ZP_03029030.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
B7A]
gi|193070632|ref|ZP_03051569.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
E110019]
gi|194433973|ref|ZP_03066244.1| succinate dehydrogenase, cytochrome b556 subunit [Shigella
dysenteriae 1012]
gi|194439251|ref|ZP_03071331.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
101-1]
gi|195939062|ref|ZP_03084444.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O157:H7 str. EC4024]
gi|208809581|ref|ZP_03251918.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4206]
gi|208815578|ref|ZP_03256757.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4045]
gi|208823149|ref|ZP_03263467.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4042]
gi|209397702|ref|YP_002269343.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4115]
gi|217326122|ref|ZP_03442206.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. TW14588]
gi|253774308|ref|YP_003037139.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|256023677|ref|ZP_05437542.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia sp. 4_1_40B]
gi|261224422|ref|ZP_05938703.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. FRIK2000]
gi|261254587|ref|ZP_05947120.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. FRIK966]
gi|293413998|ref|ZP_06656647.1| succinate dehydrogenase [Escherichia coli B185]
gi|300816369|ref|ZP_07096591.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 107-1]
gi|300822991|ref|ZP_07103126.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 119-7]
gi|300900716|ref|ZP_07118865.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 198-1]
gi|300906978|ref|ZP_07124647.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 84-1]
gi|300918380|ref|ZP_07134980.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 115-1]
gi|300929475|ref|ZP_07144943.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 187-1]
gi|300947200|ref|ZP_07161410.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 116-1]
gi|300957667|ref|ZP_07169857.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 175-1]
gi|301027099|ref|ZP_07190471.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 196-1]
gi|301305207|ref|ZP_07211305.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 124-1]
gi|301648024|ref|ZP_07247791.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 146-1]
gi|307137332|ref|ZP_07496688.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli H736]
gi|309797434|ref|ZP_07691826.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 145-7]
gi|331641222|ref|ZP_08342357.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
H736]
gi|331651719|ref|ZP_08352738.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
M718]
gi|331662074|ref|ZP_08362997.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
TA143]
gi|331667087|ref|ZP_08367952.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
TA271]
gi|331672237|ref|ZP_08373028.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
TA280]
gi|331676403|ref|ZP_08377100.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
H591]
gi|331682152|ref|ZP_08382774.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
H299]
gi|157065881|gb|ABV05136.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
HS]
gi|157076932|gb|ABV16640.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
E24377A]
gi|169755862|gb|ACA78561.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
ATCC 8739]
gi|187427820|gb|ACD07094.1| succinate dehydrogenase, cytochrome b556 subunit [Shigella boydii
CDC 3083-94]
gi|188015176|gb|EDU53298.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4113]
gi|188490241|gb|EDU65344.1| succinate dehydrogenase cytochrome b556 subunit [Escherichia coli
53638]
gi|189003141|gb|EDU72127.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4076]
gi|189355778|gb|EDU74197.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4401]
gi|189363510|gb|EDU81929.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4486]
gi|189365913|gb|EDU84329.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4501]
gi|189372990|gb|EDU91406.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC869]
gi|189376480|gb|EDU94896.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC508]
gi|190902759|gb|EDV62489.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
B7A]
gi|192956020|gb|EDV86486.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
E110019]
gi|194417738|gb|EDX33836.1| succinate dehydrogenase, cytochrome b556 subunit [Shigella
dysenteriae 1012]
gi|194421836|gb|EDX37843.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
101-1]
gi|208729382|gb|EDZ78983.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4206]
gi|208732226|gb|EDZ80914.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4045]
gi|208737342|gb|EDZ85026.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4042]
gi|209159102|gb|ACI36535.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. EC4115]
gi|217322343|gb|EEC30767.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
O157:H7 str. TW14588]
gi|253325352|gb|ACT29954.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|260450125|gb|ACX40547.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
DH1]
gi|291434056|gb|EFF07029.1| succinate dehydrogenase [Escherichia coli B185]
gi|299879433|gb|EFI87644.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 196-1]
gi|300315612|gb|EFJ65396.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 175-1]
gi|300355775|gb|EFJ71645.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 198-1]
gi|300401199|gb|EFJ84737.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 84-1]
gi|300414443|gb|EFJ97753.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 115-1]
gi|300453186|gb|EFK16806.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 116-1]
gi|300462584|gb|EFK26077.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 187-1]
gi|300524532|gb|EFK45601.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 119-7]
gi|300531059|gb|EFK52121.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 107-1]
gi|300839519|gb|EFK67279.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 124-1]
gi|301073850|gb|EFK88656.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 146-1]
gi|308118958|gb|EFO56220.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 145-7]
gi|315135377|dbj|BAJ42536.1| succinate dehydrogenase [Escherichia coli DH1]
gi|315257638|gb|EFU37606.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 85-1]
gi|320637968|gb|EFX07737.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O157:H7 str. G5101]
gi|320643363|gb|EFX12543.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O157:H- str. 493-89]
gi|320648712|gb|EFX17345.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O157:H- str. H 2687]
gi|320654296|gb|EFX22349.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320659929|gb|EFX27471.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O55:H7 str. USDA 5905]
gi|320664753|gb|EFX31891.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O157:H7 str. LSU-61]
gi|323938299|gb|EGB34556.1| succinate dehydrogenase [Escherichia coli E1520]
gi|323942943|gb|EGB39107.1| succinate dehydrogenase [Escherichia coli E482]
gi|323947014|gb|EGB43028.1| succinate dehydrogenase [Escherichia coli H120]
gi|323963102|gb|EGB58672.1| succinate dehydrogenase [Escherichia coli H489]
gi|323972006|gb|EGB67226.1| succinate dehydrogenase [Escherichia coli TA007]
gi|331038020|gb|EGI10240.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
H736]
gi|331049997|gb|EGI22055.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
M718]
gi|331060496|gb|EGI32460.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
TA143]
gi|331065443|gb|EGI37336.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
TA271]
gi|331070432|gb|EGI41796.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
TA280]
gi|331075896|gb|EGI47193.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
H591]
gi|331080576|gb|EGI51752.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
H299]
Length = 134
Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ +
Sbjct: 9 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASA 68
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASILTVLI 121
M + ++ A+ +H++ GIR+++ D + + + AKI+ + +++ L+
Sbjct: 69 IMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLL 128
Query: 122 VWII 125
++
Sbjct: 129 AGVL 132
>gi|227114759|ref|ZP_03828415.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Pectobacterium carotovorum subsp. brasiliensis PBR1692]
gi|227327541|ref|ZP_03831565.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Pectobacterium carotovorum subsp. carotovorum WPP14]
Length = 129
Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
S+K RP++ LQ + T SI+HR++G + ++ ++++ + E
Sbjct: 3 KSVKKQRPVNLELQTIQFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSEEGFLRAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-----KKIATQMAKINIIASI 116
MD + + ++ A+ +H++GGIR+L+ D + K+ A I ++ SI
Sbjct: 63 EIMDSFIVKFIVWGILVALAYHIVGGIRHLLMDFGYIEEDFAAGKRSANISFIITVVLSI 122
Query: 117 LTVLIVW 123
L ++VW
Sbjct: 123 LAGVLVW 129
>gi|59801319|ref|YP_208031.1| putative fumarate reductase cytochrome b large subunit [Neisseria
gonorrhoeae FA 1090]
gi|194098442|ref|YP_002001501.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
NCCP11945]
gi|239998841|ref|ZP_04718765.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
35/02]
gi|240014244|ref|ZP_04721157.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
DGI18]
gi|240016680|ref|ZP_04723220.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
FA6140]
gi|240080869|ref|ZP_04725412.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
FA19]
gi|240112767|ref|ZP_04727257.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
MS11]
gi|240115518|ref|ZP_04729580.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
PID18]
gi|240117813|ref|ZP_04731875.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
PID1]
gi|240121807|ref|ZP_04734769.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
PID24-1]
gi|240123368|ref|ZP_04736324.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
PID332]
gi|240125616|ref|ZP_04738502.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
SK-92-679]
gi|240128072|ref|ZP_04740733.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
SK-93-1035]
gi|254493627|ref|ZP_05106798.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
1291]
gi|260440671|ref|ZP_05794487.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
DGI2]
gi|268594684|ref|ZP_06128851.1| succinate dehydrogenase [Neisseria gonorrhoeae 35/02]
gi|268596986|ref|ZP_06131153.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
FA19]
gi|268598835|ref|ZP_06133002.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
MS11]
gi|268601193|ref|ZP_06135360.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
PID18]
gi|268603513|ref|ZP_06137680.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
PID1]
gi|268681993|ref|ZP_06148855.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
PID332]
gi|268684205|ref|ZP_06151067.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
SK-92-679]
gi|268686461|ref|ZP_06153323.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
SK-93-1035]
gi|291043980|ref|ZP_06569696.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
DGI2]
gi|293399179|ref|ZP_06643344.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
gonorrhoeae F62]
gi|59718214|gb|AAW89619.1| putative fumarate reductase cytochrome b large subunit [Neisseria
gonorrhoeae FA 1090]
gi|193933732|gb|ACF29556.1| Succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
NCCP11945]
gi|226512667|gb|EEH62012.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
1291]
gi|268548073|gb|EEZ43491.1| succinate dehydrogenase [Neisseria gonorrhoeae 35/02]
gi|268550774|gb|EEZ45793.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
FA19]
gi|268582966|gb|EEZ47642.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
MS11]
gi|268585324|gb|EEZ50000.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
PID18]
gi|268587644|gb|EEZ52320.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
PID1]
gi|268622277|gb|EEZ54677.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
PID332]
gi|268624489|gb|EEZ56889.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
SK-92-679]
gi|268626745|gb|EEZ59145.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
SK-93-1035]
gi|291012443|gb|EFE04432.1| succinate dehydrogenase cytochrome B subunit [Neisseria gonorrhoeae
DGI2]
gi|291610593|gb|EFF39703.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
gonorrhoeae F62]
gi|317164128|gb|ADV07669.1| putative fumarate reductase cytochrome b large subunit [Neisseria
gonorrhoeae TCDC-NG08107]
Length = 125
Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 57/118 (48%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RP+ L RL VSI+HRI+G +++ P ++++ + E + R +
Sbjct: 6 RPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVSHP 65
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ ++ L WA +HH L GIR+L D L+ A AK ++++ +++ +
Sbjct: 66 LVKLVLIGILWAYLHHSLAGIRFLFLDAHKGLELNTARNTAKAVFASALVLTVVLGAL 123
>gi|24050819|gb|AAN42220.1| succinate dehydrogenase, cytochrome b556 [Shigella flexneri 2a str.
301]
gi|30040361|gb|AAP16093.1| succinate dehydrogenase, cytochrome b556 [Shigella flexneri 2a str.
2457T]
Length = 134
Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++ + +
Sbjct: 9 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILQWLLGTSLSSPEGFEQASA 68
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASILTVLI 121
M + ++ A+ +H++ GIR+++ D + + + AKI+ + +++ L+
Sbjct: 69 IMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLL 128
Query: 122 VWII 125
++
Sbjct: 129 AGVL 132
>gi|300926124|ref|ZP_07141937.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 182-1]
gi|301327913|ref|ZP_07221084.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 78-1]
gi|300417823|gb|EFK01134.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 182-1]
gi|300845556|gb|EFK73316.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 78-1]
Length = 134
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ +
Sbjct: 9 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASA 68
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-----KKIATQMAKINIIASIL 117
M + ++ A+ +H++ GIR+++ D + K+ A I ++ S L
Sbjct: 69 IMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSFL 128
Query: 118 TVLIVW 123
++VW
Sbjct: 129 AGVLVW 134
>gi|148707185|gb|EDL39132.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, isoform CRA_a [Mus musculus]
Length = 150
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ +NRPLSPHL IY+ M +S+ HR +G + G + + N E L +
Sbjct: 25 KNTSSNRPLSPHLTIYKWSLPMALSVCHRGSGIALSGGVSLFGLSALLLPGNFESYLMFV 84
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ G + F+ + +++H L GIR+L+WD+ L
Sbjct: 85 KSLCLGPTLIYSAKFVLVFPLMYHSLNGIRHLLWDLGKGLAIPQVWLSG 133
>gi|110640930|ref|YP_668658.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli 536]
gi|170679876|ref|YP_001742822.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli SMS-3-5]
gi|227884312|ref|ZP_04002117.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli 83972]
gi|300937822|ref|ZP_07152618.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 21-1]
gi|300989869|ref|ZP_07178998.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 45-1]
gi|301020818|ref|ZP_07184882.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 69-1]
gi|301046045|ref|ZP_07193225.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 185-1]
gi|306812870|ref|ZP_07447063.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli NC101]
gi|331645870|ref|ZP_08346973.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
M605]
gi|26107087|gb|AAN79271.1|AE016757_175 Succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
CFT073]
gi|110342522|gb|ABG68759.1| succinate dehydrogenase cytochrome subunit [Escherichia coli 536]
gi|170517594|gb|ACB15772.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
SMS-3-5]
gi|227838398|gb|EEJ48864.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli 83972]
gi|300301962|gb|EFJ58347.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 185-1]
gi|300398464|gb|EFJ82002.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 69-1]
gi|300407272|gb|EFJ90810.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 45-1]
gi|300457187|gb|EFK20680.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 21-1]
gi|305853633|gb|EFM54072.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli NC101]
gi|307552573|gb|ADN45348.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
ABU 83972]
gi|312945246|gb|ADR26073.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli O83:H1 str. NRG 857C]
gi|315292034|gb|EFU51386.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 153-1]
gi|315299240|gb|EFU58494.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 16-3]
gi|323967428|gb|EGB62848.1| succinate dehydrogenase [Escherichia coli M863]
gi|323976308|gb|EGB71398.1| succinate dehydrogenase [Escherichia coli TW10509]
gi|324006245|gb|EGB75464.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 57-2]
gi|324114831|gb|EGC08799.1| succinate dehydrogenase [Escherichia fergusonii B253]
gi|331044622|gb|EGI16749.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
M605]
Length = 134
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ +
Sbjct: 9 NVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASA 68
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASILTVLI 121
M + ++ A+ +H++ GIR+++ D + + + AKI+ + +++ L+
Sbjct: 69 IMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLL 128
Query: 122 VWII 125
++
Sbjct: 129 AGVL 132
>gi|294671245|ref|ZP_06736098.1| hypothetical protein NEIELOOT_02955 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307073|gb|EFE48316.1| hypothetical protein NEIELOOT_02955 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 127
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIY--RLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
RP+ LQ+ L VSI+HR +G ++++ PV++ + S +
Sbjct: 2 QTKKRPVFLDLQVLVRHLPVPGIVSILHRASGVILFIMIPVLLMLLNGSLSSGEDFESYK 61
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
D + ++ L WA +HH+ GIR+L+ D L+ + + AK+ +I S+ L+
Sbjct: 62 AVADNPLVKLILIGVLWAFLHHLCAGIRFLLLDAHQGLELQTCRKTAKLVLIISLSLTLV 121
Query: 122 VWI 124
+ +
Sbjct: 122 LGV 124
>gi|311694408|gb|ADP97281.1| succinate dehydrogenase, cytochrome b560 subunit [marine bacterium
HP15]
Length = 125
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 64/123 (52%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L + SI+HRI+G ++++ +++ +GE S +
Sbjct: 1 MNSKRPVNLDLGKFHFPLPAITSILHRISGIILFVAVAFMLYGLQLSLSGEEGFSRVSEL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
+D + ++ + A+++H++ GI++L D+ + + + +KI + S++ +L+
Sbjct: 61 LDSFLAKLITWGILSALLYHLVAGIKHLFMDMGIGEELESGRLASKITVAVSVILILLAG 120
Query: 122 VWI 124
VW+
Sbjct: 121 VWV 123
>gi|193065547|ref|ZP_03046615.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
E22]
gi|194429052|ref|ZP_03061583.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
B171]
gi|192926836|gb|EDV81462.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
E22]
gi|194412883|gb|EDX29174.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
B171]
gi|324020372|gb|EGB89591.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 117-3]
Length = 134
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ +
Sbjct: 9 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFIAVGILLWLLGTSLSSPEGFEQASA 68
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASILTVLI 121
M + ++ A+ +H++ GIR+++ D + + + AKI+ + +++ L+
Sbjct: 69 IMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLL 128
Query: 122 VWII 125
++
Sbjct: 129 AGVL 132
>gi|126730329|ref|ZP_01746140.1| succinate dehydrogenase, cytochrome b556 subunit [Sagittula
stellata E-37]
gi|126709062|gb|EBA08117.1| succinate dehydrogenase, cytochrome b556 subunit [Sagittula
stellata E-37]
Length = 131
Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 5 KNNRPLSPHL--QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ NRPLSP + Q YR T SI+ RITG ++V W C A + +
Sbjct: 8 RGNRPLSPFMIGQYYRPQMTSISSIMVRITGIASLGTAALLVLWLLCAATSPDAYAVVNG 67
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + +V + L +WA+ +HMLG +R++IWD+ ++ + + M I I + + +
Sbjct: 68 ILTSFIGDVLMLLASWAIWYHMLGRLRHVIWDLGYMVEIEPSEMMGWIMFIGASVMAIFT 127
Query: 123 WII 125
I+
Sbjct: 128 AIV 130
>gi|293397238|ref|ZP_06641511.1| succinate dehydrogenase [Serratia odorifera DSM 4582]
gi|291420258|gb|EFE93514.1| succinate dehydrogenase [Serratia odorifera DSM 4582]
Length = 129
Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 3 KTVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGMSLSSQEGFLQAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASILTVL 120
M+ + + A+ +H+ GGIR+L+ D + + A++ + + + +
Sbjct: 63 AIMNSFFVKFIFWGILTALAYHICGGIRHLLMDFGYIEESLAAGQRSAQVAFVLTAVLSI 122
Query: 121 IVWII 125
+ ++
Sbjct: 123 LAGVL 127
>gi|91209755|ref|YP_539741.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli UTI89]
gi|117622915|ref|YP_851828.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli APEC O1]
gi|237707317|ref|ZP_04537798.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia sp. 3_2_53FAA]
gi|91071329|gb|ABE06210.1| succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
UTI89]
gi|115512039|gb|ABJ00114.1| succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
APEC O1]
gi|226898527|gb|EEH84786.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia sp. 3_2_53FAA]
gi|294490296|gb|ADE89052.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
IHE3034]
gi|307627864|gb|ADN72168.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia coli UM146]
gi|315287165|gb|EFU46577.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 110-3]
gi|323952720|gb|EGB48588.1| succinate dehydrogenase [Escherichia coli H252]
gi|323958465|gb|EGB54171.1| succinate dehydrogenase [Escherichia coli H263]
Length = 134
Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ +
Sbjct: 9 NVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASA 68
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-----KKIATQMAKINIIASIL 117
M + ++ A+ +H++ GIR+++ D + K+ A I ++ S+L
Sbjct: 69 IMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVFSLL 128
Query: 118 TVLIVW 123
++VW
Sbjct: 129 AGVLVW 134
>gi|206581019|ref|YP_002239654.1| succinate dehydrogenase, cytochrome b556 subunit [Klebsiella
pneumoniae 342]
gi|238893759|ref|YP_002918493.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Klebsiella pneumoniae NTUH-K2044]
gi|262041216|ref|ZP_06014428.1| succinate dehydrogenase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288936496|ref|YP_003440555.1| succinate dehydrogenase, cytochrome b556 subunit [Klebsiella
variicola At-22]
gi|329998780|ref|ZP_08303215.1| succinate dehydrogenase, cytochrome b556 subunit [Klebsiella sp. MS
92-3]
gi|206570077|gb|ACI11853.1| succinate dehydrogenase, cytochrome b556 subunit [Klebsiella
pneumoniae 342]
gi|238546075|dbj|BAH62426.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
gi|259041445|gb|EEW42504.1| succinate dehydrogenase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288891205|gb|ADC59523.1| succinate dehydrogenase, cytochrome b556 subunit [Klebsiella
variicola At-22]
gi|328538566|gb|EGF64671.1| succinate dehydrogenase, cytochrome b556 subunit [Klebsiella sp. MS
92-3]
Length = 134
Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 9 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFLTAAS 68
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLC-LDKKIATQMAKINIIASILTVLI 121
MD + ++ A+ +H++ GIR+L+ D + + AKI+ + +++ L+
Sbjct: 69 IMDSFFVKFIMWGILTALAYHVVVGIRHLMMDFGYLDETLEAGKRSAKISFVITVVLSLL 128
Query: 122 VWII 125
++
Sbjct: 129 AGVL 132
>gi|256071967|ref|XP_002572309.1| succinate dehydrogenase [Schistosoma mansoni]
gi|238657465|emb|CAZ28540.1| succinate dehydrogenase, putative [Schistosoma mansoni]
Length = 192
Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 2/126 (1%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVY-LGTPVVVFWFFCIANGEHTLSSLR 61
+ RP SPHLQ+Y M S +HR TG + + + V + FF + + L +R
Sbjct: 66 NATEKRPWSPHLQVYSSPLVMRFSFLHRATGIAMAIVWSSVGIGAFFFTGHYDSILDYVR 125
Query: 62 -CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
++ SV C F+ + +++H L G+R+L WD ++ K I + +S++
Sbjct: 126 NMHLGTSVIAACKFILCYPLVYHYLNGMRHLAWDYAIGFPIKTCNTTGFIALGSSLVISA 185
Query: 121 IVWIIK 126
I+ I+
Sbjct: 186 ILACIR 191
>gi|114571387|ref|YP_758067.1| succinate dehydrogenase, cytochrome b subunit [Maricaulis maris
MCS10]
gi|114341849|gb|ABI67129.1| succinate dehydrogenase, cytochrome b subunit [Maricaulis maris
MCS10]
Length = 130
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH-TLSSL 60
S + RP+SPHLQ++R TM SI+HR TG Y+G + W +A G ++S L
Sbjct: 3 SDWSDPRPMSPHLQVWRWHATMASSILHRATGVANYIGAVAISVWVVLLAFGAEGSISFL 62
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
V L T++V +H L G+R+L+WD D K + + + I +++
Sbjct: 63 FEGWMAWVTRFGLIALTYSVSYHWLNGLRHLLWDAGKGYDPKGSNLRSILIIFGAVIPTA 122
Query: 121 IVWI 124
++W+
Sbjct: 123 LIWL 126
>gi|261379697|ref|ZP_05984270.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
subflava NJ9703]
gi|284797361|gb|EFC52708.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
subflava NJ9703]
Length = 125
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 61/120 (50%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+RP+ + RL VSI+HRI+G +++ PV++++F + E + + R +
Sbjct: 4 KSRPVFLEIPNIRLPIPGIVSILHRISGVGLFVMLPVLLYFFSGTLDREASFEAYRSAIS 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
++ L WA +HH GIR+L DV L+ A AK+ ++++ +++ +
Sbjct: 64 NPFVKLILIGLLWAYLHHFFAGIRFLFLDVHKGLELNTARTTAKVVFASALILTVVLGAL 123
>gi|225557168|gb|EEH05455.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
capsulatus G186AR]
Length = 187
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 5/130 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVV-FWFFCIANGEH---- 55
+ + NRP+SPHL IY+ T +S +RITG + G + + G H
Sbjct: 58 LPQQRLNRPVSPHLSIYQPQITWILSSTNRITGVALSGGLYIFASAYLVAPLLGWHLESA 117
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
++++ + + F H G R+L+WD+ K + +
Sbjct: 118 SIAAAFAGLPLAAKFCLKFAAALPFTFHSFNGCRHLVWDMGKQFTNKQVIVTGWTVVGLT 177
Query: 116 ILTVLIVWII 125
+ + L + +
Sbjct: 178 VSSALALAFL 187
>gi|289742767|gb|ADD20131.1| succinate dehydrogenase cytochrome b subunit [Glossina morsitans
morsitans]
Length = 173
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+ + R +SPHL IY+ T +S+ HR TG V+ G + +S+
Sbjct: 48 KNARLGREMSPHLTIYQPQLTSLLSVTHRGTGMVLTAGVWALGLAALISPQDIGNYASVI 107
Query: 62 --CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
++ G V F++ + + H G+R+L+WD L K + + S +
Sbjct: 108 EGLHLGGGTLTVLKFMFAFPLAFHTANGVRHLLWDTGRFLKIKEVYSTGYVMVGMSFVLA 167
Query: 120 LIVWII 125
++ ++
Sbjct: 168 AMLAVM 173
>gi|240277715|gb|EER41223.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
capsulatus H143]
Length = 187
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 13/134 (9%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPV---------VVFWFFCIA 51
+ + NRP+SPHL IY+ T +S +RITG + G + ++ W A
Sbjct: 58 LPQQRLNRPVSPHLSIYQPQITWILSSTNRITGVALSGGLYIFASAYLVAPLLGWHLESA 117
Query: 52 NGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN 111
+ + L + F H G R+L+WD+ K
Sbjct: 118 SIAAAFAGLPLAAKFCL----KFAAALPFTFHSFNGCRHLVWDMGKQFTNKQVIVTGWTV 173
Query: 112 IIASILTVLIVWII 125
+ ++ + L + +
Sbjct: 174 VGLTVSSALALAFL 187
>gi|154285510|ref|XP_001543550.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150407191|gb|EDN02732.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 187
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 5/130 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVV-FWFFCIANGEH---- 55
+ + NRP+SPHL IYR T +S +RITG V+ G + + G H
Sbjct: 58 LPQQRLNRPVSPHLSIYRPQITWILSSTNRITGVVLSGGLYIFASAYLVAPLLGWHLESA 117
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
++++ + + F H G R+L+WD+ K + +
Sbjct: 118 SIAAAFAGLPLAAKFCLKFAAALPFTFHSFNGCRHLVWDMGKQFTNKQIIVTGWTVVGLT 177
Query: 116 ILTVLIVWII 125
+ + L + +
Sbjct: 178 VSSALALAFL 187
>gi|241760378|ref|ZP_04758473.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
flavescens SK114]
gi|241319256|gb|EER55734.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
flavescens SK114]
Length = 125
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 61/120 (50%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+RP+ + RL VSI+HRI+G +++ PV++++F + E + + R +
Sbjct: 4 KSRPVFLEIPNIRLPIPGIVSILHRISGVGLFVMLPVLLYFFSGTLDREASFEAYRSAIS 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
++ L WA +HH GIR+L DV L+ A AK+ ++++ +++ +
Sbjct: 64 NPFVKLILIGLLWAYLHHFFAGIRFLFLDVHKGLELNTARATAKVVFASALILTVVLGAL 123
>gi|77360592|ref|YP_340167.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
sdhD [Pseudoalteromonas haloplanktis TAC125]
gi|76875503|emb|CAI86724.1| putative succinate dehydrogenase, hydrophobic subunit, cytochrome
b556 with sdhD [Pseudoalteromonas haloplanktis TAC125]
Length = 125
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ L + T SI HR+TG ++ V++ + + ++
Sbjct: 1 MKKQRPVNLDLTTISMPATAKASIFHRVTGVALFFALTFVIWAWSESLSSAEGFEFVKGL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
+G + + + + +H++GGIR++I D+ + + AKI + ++ ++
Sbjct: 61 FNGFIAKFIAWGTVSVLGYHLIGGIRHMIMDMGHWEELESGNLSAKIAMALGVVFAVLAG 120
Query: 122 VWI 124
VWI
Sbjct: 121 VWI 123
>gi|87119172|ref|ZP_01075070.1| succinate dehydrogenase (C subunit) [Marinomonas sp. MED121]
gi|86165563|gb|EAQ66830.1| succinate dehydrogenase (C subunit) [Marinomonas sp. MED121]
Length = 138
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL-RC 62
+ RP++ + + T VSI+HR+TG ++++G + + F + + +
Sbjct: 14 VNKKRPVNLDIATISMPVTAIVSILHRVTGVILFVGLAFLFYAFDLSLDSQEGFDQVVNA 73
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + ++ A+++H + GI++L D+ + + AK N++ + + +L+V
Sbjct: 74 LQTSFIAKFIIWGVVSALMYHFVAGIKHLFMDIGYFEELESGQLAAKANLVIAAILILVV 133
Query: 123 WI 124
+
Sbjct: 134 GV 135
>gi|146310880|ref|YP_001175954.1| succinate dehydrogenase subunit C [Enterobacter sp. 638]
gi|145317756|gb|ABP59903.1| succinate dehydrogenase subunit C [Enterobacter sp. 638]
Length = 157
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 56/126 (44%), Gaps = 5/126 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ L+ R T SI+HR +G + ++ ++++ +
Sbjct: 32 NVKKQRPVNLDLKTIRFPVTAIASILHRASGVITFVAVGILLWLLGTSLSSPEGFLQASA 91
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-----KKIATQMAKINIIASIL 117
M + ++ A+ H++ G+R+++ D + K+ A I ++ SIL
Sbjct: 92 IMSSFFVKFIMWGILTALAFHVVVGVRHMLMDFGYLEETFEAGKRSAYISFAITVVFSIL 151
Query: 118 TVLIVW 123
++VW
Sbjct: 152 AGVLVW 157
>gi|225075124|ref|ZP_03718323.1| hypothetical protein NEIFLAOT_00123 [Neisseria flavescens
NRL30031/H210]
gi|224953608|gb|EEG34817.1| hypothetical protein NEIFLAOT_00123 [Neisseria flavescens
NRL30031/H210]
Length = 125
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 62/120 (51%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+RP+ + RL VSI+HRI+G +++ PV++++F + E + + R +
Sbjct: 4 KSRPVFLEIPNIRLPIPGIVSILHRISGVGLFVMLPVLLYFFSGTLDREASFEAYRSAIS 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
++ L WA +HH L GIR+L DV L+ A AK+ ++++ +++ +
Sbjct: 64 NPFVKLILIGLLWAYLHHFLAGIRFLFLDVHKGLELNTARATAKVVFASALILTVVLGAL 123
>gi|153948100|ref|YP_001401848.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Yersinia pseudotuberculosis IP 31758]
gi|152959595|gb|ABS47056.1| succinate dehydrogenase, cytochrome b556 subunit [Yersinia
pseudotuberculosis IP 31758]
Length = 125
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 1 MKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSVSSQEGFMQAATI 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKI----NIIASILT 118
M+ + + A+ +H+ GGIR+L+ D + + T+ A++ ++ S+L
Sbjct: 61 MNSFFVKFIFWGILTALAYHICGGIRHLLMDFGYLEENLAVGTRSAQVAMGLTLVLSVLA 120
Query: 119 VLIVW 123
++VW
Sbjct: 121 GVLVW 125
>gi|261822347|ref|YP_003260453.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Pectobacterium wasabiae WPP163]
gi|261606360|gb|ACX88846.1| succinate dehydrogenase, cytochrome b556 subunit [Pectobacterium
wasabiae WPP163]
Length = 129
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
S+K RP++ LQ + T SI+HR++G + ++ ++++ + E
Sbjct: 3 KSVKKQRPVNLELQTIQFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSEEGFLRAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-----KKIATQMAKINIIASI 116
MD + + ++ A+ +H++GG+R+L+ D + K+ A I ++ SI
Sbjct: 63 EIMDSFIVKFIVWGILAALAYHIVGGLRHLLMDFGYIEEDLAAGKRSANISFIITVVLSI 122
Query: 117 LTVLIVW 123
L ++VW
Sbjct: 123 LAGVLVW 129
>gi|59711426|ref|YP_204202.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio fischeri ES114]
gi|59479527|gb|AAW85314.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Vibrio fischeri ES114]
Length = 133
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 62/125 (49%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ +K +RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 7 LVKVKKSRPVNLDLQTIRFPITAIASILHRVSGVITFVSVGILLWLLNLSLSSPIGFAQA 66
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
Y+DG ++ A+ +H++ GIR+L+ D+ + + TQ AK+ + + L
Sbjct: 67 ADYVDGFFVTFIMWGILTALAYHIVVGIRHLLMDMGYFEELESGTQSAKVAFAITAVLSL 126
Query: 121 IVWII 125
+ ++
Sbjct: 127 LAGVL 131
>gi|149248046|ref|XP_001528410.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448364|gb|EDK42752.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 189
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLS-- 58
+ + + NRP+SPHLQIY+ T +S HRITG + + + + +
Sbjct: 59 LVAQRKNRPVSPHLQIYQPQLTWIMSSFHRITGVALAGAFYALTCTYAATSILGYHFDTQ 118
Query: 59 SLRCYMDGSVFEV---CLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+L + L + ++H GIR++IWD L + + A+
Sbjct: 119 TLVSAFTSLPVALQYGIKALGAYPFVYHAANGIRHIIWDFGKELTIPGVYRTGYAVLGAT 178
Query: 116 ILTVLIV 122
+ +
Sbjct: 179 AILGTAL 185
>gi|161504118|ref|YP_001571230.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. arizonae serovar
62:z4,z23:-- str. RSK2980]
gi|160865465|gb|ABX22088.1| hypothetical protein SARI_02216 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 134
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ +
Sbjct: 9 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFIAVGILLWLLGTSLSSPEGFQQAAD 68
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASILTVLI 121
MDG + + ++ A+ +H++ GIR+++ D + + + AKI+ + +++ L+
Sbjct: 69 IMDGFLVKFIMWGILTALAYHVIVGIRHMLMDFGYLEETFEAGQRSAKISFVITVVLSLL 128
Query: 122 VWII 125
++
Sbjct: 129 AGVL 132
>gi|253687626|ref|YP_003016816.1| succinate dehydrogenase, cytochrome b556 subunit [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251754204|gb|ACT12280.1| succinate dehydrogenase, cytochrome b556 subunit [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 129
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
S+K RP++ LQ + T SI+HR++G + ++ ++++ + E
Sbjct: 3 KSVKKQRPVNLELQTIQFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSEEGFLRAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-----KKIATQMAKINIIASI 116
MD + + ++ A+ +H++GG+R+L+ D + K+ A I ++ SI
Sbjct: 63 EIMDSFIVKFIVWGILVALAYHIVGGLRHLLMDFGYIEEDLAAGKRSANISFIITVVLSI 122
Query: 117 LTVLIVW 123
L ++VW
Sbjct: 123 LAGVLVW 129
>gi|189184864|ref|YP_001938649.1| succinate dehydrogenase cytochrome b-556 subunit [Orientia
tsutsugamushi str. Ikeda]
gi|189181635|dbj|BAG41415.1| succinate dehydrogenase cytochrome b-556 subunit [Orientia
tsutsugamushi str. Ikeda]
Length = 127
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RP+SPH+ IYR+ +M +SI+HR++G V+ G ++ +W + + + +
Sbjct: 10 RPMSPHITIYRMQMSMILSILHRLSGMAVFGGASIITWWLILCVYSDFDRVVVDIFYNLW 69
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
+ +L + H+ GIR+LIWD K I + SI+
Sbjct: 70 FQALI-YLTIFTTCFHLCTGIRHLIWDTGYGFSIKYINISGWIAVALSIIV 119
>gi|161615042|ref|YP_001589007.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Paratyphi B
str. SPB7]
gi|167552850|ref|ZP_02346601.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|167993008|ref|ZP_02574103.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|168230610|ref|ZP_02655668.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|168238875|ref|ZP_02663933.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|168240583|ref|ZP_02665515.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168264335|ref|ZP_02686308.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|168467712|ref|ZP_02701549.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|168820140|ref|ZP_02832140.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|194444043|ref|YP_002039969.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Newport
str. SL254]
gi|194451536|ref|YP_002044762.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Heidelberg
str. SL476]
gi|194470195|ref|ZP_03076179.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194737993|ref|YP_002113838.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197248270|ref|YP_002145690.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Agona str.
SL483]
gi|197265498|ref|ZP_03165572.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|198243969|ref|YP_002214700.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|200390971|ref|ZP_03217582.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204930001|ref|ZP_03221022.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|213021698|ref|ZP_03336145.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhi str.
404ty]
gi|213053349|ref|ZP_03346227.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhi str.
E00-7866]
gi|213425381|ref|ZP_03358131.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhi str.
E02-1180]
gi|213581387|ref|ZP_03363213.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhi str.
E98-0664]
gi|213615564|ref|ZP_03371390.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhi str.
E98-2068]
gi|213851935|ref|ZP_03381467.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhi str.
M223]
gi|238911662|ref|ZP_04655499.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Tennessee
str. CDC07-0191]
gi|161364406|gb|ABX68174.1| hypothetical protein SPAB_02802 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194402706|gb|ACF62928.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194409840|gb|ACF70059.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194456559|gb|EDX45398.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194713495|gb|ACF92716.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|195629175|gb|EDX48543.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|197211973|gb|ACH49370.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197243753|gb|EDY26373.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197288360|gb|EDY27741.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197938485|gb|ACH75818.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|199603416|gb|EDZ01962.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204320995|gb|EDZ06196.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205322576|gb|EDZ10415.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205328915|gb|EDZ15679.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205334896|gb|EDZ21660.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|205339890|gb|EDZ26654.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|205343208|gb|EDZ29972.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205347161|gb|EDZ33792.1| succinate dehydrogenase, cytochrome b556 subunit [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|312911758|dbj|BAJ35732.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhimurium
str. T000240]
gi|320085000|emb|CBY94789.1| succinate dehydrogenase, cytochrome b556 [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
gi|322615835|gb|EFY12753.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 315996572]
gi|322621231|gb|EFY18088.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 495297-1]
gi|322623651|gb|EFY20489.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 495297-3]
gi|322628923|gb|EFY25703.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 495297-4]
gi|322634903|gb|EFY31633.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 515920-1]
gi|322636569|gb|EFY33273.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 515920-2]
gi|322641778|gb|EFY38411.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 531954]
gi|322647810|gb|EFY44290.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. NC_MB110209-0054]
gi|322651860|gb|EFY48229.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. OH_2009072675]
gi|322652643|gb|EFY48992.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. CASC_09SCPH15965]
gi|322658451|gb|EFY54714.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 19N]
gi|322664946|gb|EFY61137.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 81038-01]
gi|322668384|gb|EFY64540.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. MD_MDA09249507]
gi|322670528|gb|EFY66661.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 414877]
gi|322675268|gb|EFY71344.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 366867]
gi|322679694|gb|EFY75735.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 413180]
gi|322684830|gb|EFY80829.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 446600]
gi|323193148|gb|EFZ78367.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 609458-1]
gi|323200599|gb|EFZ85674.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 556150-1]
gi|323202271|gb|EFZ87319.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 609460]
gi|323205462|gb|EFZ90428.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 507440-20]
gi|323213499|gb|EFZ98292.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 556152]
gi|323215333|gb|EGA00078.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. MB101509-0077]
gi|323220913|gb|EGA05347.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. MB102109-0047]
gi|323228078|gb|EGA12214.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. MB110209-0055]
gi|323231016|gb|EGA15132.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. MB111609-0052]
gi|323234151|gb|EGA18240.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 2009083312]
gi|323238154|gb|EGA22212.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 2009085258]
gi|323243589|gb|EGA27607.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. 315731156]
gi|323247387|gb|EGA31346.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2009159199]
gi|323251375|gb|EGA35247.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008282]
gi|323258486|gb|EGA42158.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008283]
gi|323260640|gb|EGA44249.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008284]
gi|323264712|gb|EGA48214.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008285]
gi|323270976|gb|EGA54411.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008287]
Length = 134
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ +
Sbjct: 9 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFIAVGILLWLLGTSLSSPEGFQQAAD 68
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASILTVLI 121
MDG + + ++ A+ +H++ GIR+++ D + + + AKI+ + +++ L+
Sbjct: 69 IMDGFIVKFIMWGILTALAYHVIVGIRHMLMDFGYLEETFEAGQRSAKISFVITVVLSLL 128
Query: 122 VWII 125
++
Sbjct: 129 AGVL 132
>gi|157375953|ref|YP_001474553.1| succinate dehydrogenase, cytochrome b subunit [Shewanella sediminis
HAW-EB3]
gi|157318327|gb|ABV37425.1| succinate dehydrogenase, cytochrome b subunit [Shewanella sediminis
HAW-EB3]
Length = 124
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 55/121 (45%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP+ LQ R T SI+HR++G ++ ++++ + ++ +
Sbjct: 1 MKKQRPVHLDLQTIRFPATAIASILHRVSGVIMLFAVGILIWLLNESLASPESFAATQSL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
D + + ++ A+ +H++ G+R+LI D + AK SI+ +IV
Sbjct: 61 FDNLLVKFVIWGILTALGYHLIVGVRHLIMDTGRWEELASGIASAKAAFALSIVFSIIVG 120
Query: 124 I 124
I
Sbjct: 121 I 121
>gi|300312278|ref|YP_003776370.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD protein [Herbaspirillum seropedicae SmR1]
gi|300075063|gb|ADJ64462.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD protein [Herbaspirillum seropedicae SmR1]
Length = 136
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 64/128 (50%), Gaps = 5/128 (3%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+ K RP ++ + YR+ VSI+HRI+G ++L P +++ E T
Sbjct: 3 EAAKPQRPQFRNIHLTQIAGYRMPLAAIVSIMHRISGLFLFLMLPFILYLLDSSLLSEGT 62
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
L+ + G ++ + +WA +HH GIR+LI D + LDK A + + ++ SI
Sbjct: 63 FDYLKGFTSGWFVKLVILALSWAYLHHFCAGIRHLIMDNHIGLDKDSARKSSATVLVISI 122
Query: 117 LTVLIVWI 124
+++V +
Sbjct: 123 ALMVLVAL 130
>gi|289742765|gb|ADD20130.1| succinate dehydrogenase cytochrome b subunit [Glossina morsitans
morsitans]
Length = 173
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+ + R +SPHL IY+ T +S+ HR TG V+ G + +S+
Sbjct: 48 KNARLGREMSPHLTIYQPQLTSLLSVTHRGTGMVLTAGVWALGLAALISPQDIGNYASVI 107
Query: 62 --CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
++ G F++ + + H G+R+L+WD L K + + S +
Sbjct: 108 EGLHLGGGTLTFLKFMFAFPLAFHTANGVRHLLWDTGRFLKIKEVYSTGYVMVGTSFVLA 167
Query: 120 LIVWII 125
++ +I
Sbjct: 168 AMLAMI 173
>gi|157961608|ref|YP_001501642.1| succinate dehydrogenase cytochrome b556 subunit [Shewanella
pealeana ATCC 700345]
gi|157846608|gb|ABV87107.1| Succinate dehydrogenase cytochrome b556 subunit [Shewanella
pealeana ATCC 700345]
Length = 124
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 56/121 (46%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP+ LQ R T SI+HR++G ++ ++++ + + ++
Sbjct: 1 MKKQRPVHLDLQTIRFPATAIASILHRVSGVIMLFAVGILIWLLNESLASADSFAGVQSL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
D + + ++ A+ +H++ GIR+L+ D + AK+ I S++ +I
Sbjct: 61 FDSFIVKFIVWGILTALGYHLIVGIRHLVMDAGYWEELSSGITSAKVAIALSVVFSIIAG 120
Query: 124 I 124
I
Sbjct: 121 I 121
>gi|307726505|ref|YP_003909718.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
CCGE1003]
gi|307587030|gb|ADN60427.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
CCGE1003]
Length = 167
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 3 SIKNNRPLSPH------LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
++K RP + L YRL VSI+HR++G ++++ P +++ F E +
Sbjct: 33 TLKKPRPEFRNIGIGQILTAYRLPLAGRVSILHRVSGGLLFVALPFLLYLFDQSLTSELS 92
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIAS 115
+ + + ++ + + WA + H G+R+L+ D + + K+ Q + + + S
Sbjct: 93 FEGFKAFFSNIIVKLIVLVLGWAYMFHFCAGVRHLLMDTNHEAVTKEKGRQTSIVVFVVS 152
Query: 116 ILTVLIVWI 124
L L +
Sbjct: 153 SLLTLAFAL 161
>gi|171463739|ref|YP_001797852.1| succinate dehydrogenase, cytochrome b556 subunit [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171193277|gb|ACB44238.1| succinate dehydrogenase, cytochrome b556 subunit [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 139
Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 62/129 (48%), Gaps = 5/129 (3%)
Query: 1 MSSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
++K +RP+ ++ + YRL VSI+HRI G+ ++L P +++ F +
Sbjct: 5 QQNVKKDRPVYRNIGLAQLIKYRLPWASKVSILHRIGGAALFLMLPFILYLFDQSLASKL 64
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ + + + ++ W +HH GIRYL+ D+ + +++ A + A + +
Sbjct: 65 SYQKFQAFTGNILVKIICLGLIWCFLHHFCAGIRYLLLDLEIGVERSEANRSAIVVLFLG 124
Query: 116 ILTVLIVWI 124
+ +V +
Sbjct: 125 LALTAVVGL 133
>gi|298369270|ref|ZP_06980588.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria sp.
oral taxon 014 str. F0314]
gi|298283273|gb|EFI24760.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria sp.
oral taxon 014 str. F0314]
Length = 125
Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 61/120 (50%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+RP+ + RL VSI+HRI+G ++++ PV+++ + E + R +
Sbjct: 4 KSRPVFLEIPNIRLPIPGIVSILHRISGVILFVMLPVLLYLLSGTLSRESAFETYRVIVS 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ ++ L WA +HH+L G+R+L D L+ A AK+ A+++ +++ +
Sbjct: 64 NPLAKLILIGVLWAYLHHLLAGVRFLFLDAHKGLELNTARNTAKLVFAAALVLTVVLGAL 123
>gi|191174045|ref|ZP_03035561.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
F11]
gi|300996468|ref|ZP_07181442.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 200-1]
gi|190905653|gb|EDV65276.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
F11]
gi|300304522|gb|EFJ59042.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 200-1]
gi|324010442|gb|EGB79661.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
MS 60-1]
Length = 134
Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ +
Sbjct: 9 NLKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASA 68
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASILTVLI 121
M + ++ A+ +H++ GIR+++ D + + + AKI+ + +++ L+
Sbjct: 69 IMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLL 128
Query: 122 VWII 125
++
Sbjct: 129 AGVL 132
>gi|294141510|ref|YP_003557488.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
violacea DSS12]
gi|293327979|dbj|BAJ02710.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella
violacea DSS12]
Length = 124
Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 53/121 (43%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP+ LQ R T SI+HR++G ++ ++++ + + ++
Sbjct: 1 MKKQRPVHLDLQTIRFPATAIASILHRVSGVIMLFAVGILIWLLSESLASPESFAGVQSL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
D + + ++ A+ +H++ GIR+LI D + AK S +IV
Sbjct: 61 FDNLLVKFVIWGILTALGYHLIVGIRHLIMDAGCWEELPAGIASAKAAFALSFAFSIIVG 120
Query: 124 I 124
+
Sbjct: 121 V 121
>gi|317491182|ref|ZP_07949618.1| succinate dehydrogenase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920729|gb|EFV42052.1| succinate dehydrogenase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 129
Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ ++K RP++ LQ R T SI+HR +G + ++ ++++ +
Sbjct: 2 IKNVKKQRPVNLDLQTIRFPVTAIASILHRASGVITFVSIGILLWLLGLSLASPEGFAQA 61
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-----KKIATQMAKINIIAS 115
MD + + ++ A+ +H+ GGIR+++ D + + A I ++ S
Sbjct: 62 AAVMDSFIVKFIVWGILTALAYHICGGIRHMLMDFGYIEESFAAGSRTAYISFAITVVLS 121
Query: 116 ILTVLIVW 123
IL ++VW
Sbjct: 122 ILAGVLVW 129
>gi|294637440|ref|ZP_06715730.1| succinate dehydrogenase, cytochrome b556 subunit [Edwardsiella
tarda ATCC 23685]
gi|291089381|gb|EFE21942.1| succinate dehydrogenase, cytochrome b556 subunit [Edwardsiella
tarda ATCC 23685]
Length = 146
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+++K RP++ L R T SI+HR++G +V++ ++++ +
Sbjct: 20 NTVKKQRPVNLDLPTIRFPITAIASILHRVSGVIVFVSIGILLWLLGLSLLSAEGFAQAS 79
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASILTVL 120
+DG + ++ L+ A+ +H+ GGIR+L+ D + + + A++ A++L +
Sbjct: 80 AVVDGVLVKLVLWGILTALAYHICGGIRHLLMDFGYLEETFSVGCRSAQVAFAATVLLSI 139
Query: 121 I--VWI 124
VW+
Sbjct: 140 CAGVWV 145
>gi|323495090|ref|ZP_08100177.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio brasiliensis LMG 20546]
gi|323310641|gb|EGA63818.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio brasiliensis LMG 20546]
Length = 130
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 59/121 (48%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HR++G + ++ ++++ + + +
Sbjct: 8 RKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSISLSSPVGYAEAVDIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
DG + L+ A+ +H+ GG+R+L+ D+ + + AK+ A+ + L+ +
Sbjct: 68 DGFFVKFILWGILTALAYHIAGGVRHLLMDMGHFEELESGAMSAKVAFAATAVLSLLAGV 127
Query: 125 I 125
+
Sbjct: 128 M 128
>gi|254514197|ref|ZP_05126258.1| succinate dehydrogenase, cytochrome b556 subunit [gamma
proteobacterium NOR5-3]
gi|219676440|gb|EED32805.1| succinate dehydrogenase, cytochrome b556 subunit [gamma
proteobacterium NOR5-3]
Length = 124
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 63/121 (52%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K+NRP++ + RL T + SI+HR++G ++ + + ++++ +SL
Sbjct: 1 MKDNRPVNLDIGTIRLPITAYASILHRVSGVIMVVASFLLLWALEQSLASPEGFASLGEL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + + ++ A+I+H L G+++LI D + + T A++ + ++ ++V
Sbjct: 61 LANPLVKFVVWGIATALIYHSLAGVKHLIMDFGIGETMEGGTLGARLVFGFTAVSAVLVG 120
Query: 124 I 124
+
Sbjct: 121 V 121
>gi|320589791|gb|EFX02247.1| succinate dehydrogenase cytochrome b560 subunit [Grosmannia
clavigera kw1407]
Length = 612
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 9/132 (6%)
Query: 1 MSSIKNNRPLSPHLQIY-RLIPTMFVSIVHRITG----SVVYLGTP-VVVFWFFCIANGE 54
++S + RP+SPHL IY + SI+HR TG ++Y G+ +
Sbjct: 481 LASQRLQRPVSPHLDIYDKRQIYFGASILHRFTGLTYAGLLYGGSLAYLAAPLLGWHLES 540
Query: 55 HTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
+L + + ++ V F W + H G R+L+WD ++ K + +
Sbjct: 541 QSLVTFAAGLPLALKGVAKFALAWPLAFHFFNGARHLVWDAAVGFSKAEIAKGTTAIWVL 600
Query: 115 SILTVL---IVW 123
S+++ L +W
Sbjct: 601 SVVSSLGLAFLW 612
>gi|157146672|ref|YP_001453991.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Citrobacter koseri ATCC BAA-895]
gi|157083877|gb|ABV13555.1| hypothetical protein CKO_02438 [Citrobacter koseri ATCC BAA-895]
Length = 134
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 22/124 (17%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ L R T SI+HR++G + ++ ++++ +
Sbjct: 9 NVKKQRPVNLDLTTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFQQASA 68
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASILTVLI 121
M + ++ A+ +H++ GIR+++ D + + + AKI+ + +++ L+
Sbjct: 69 IMGSFFIKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLL 128
Query: 122 VWII 125
++
Sbjct: 129 AGVL 132
>gi|145237506|ref|XP_001391400.1| cytochrome B-560 subunit of succinate dehydrogenase [Aspergillus
niger CBS 513.88]
gi|134075872|emb|CAL00251.1| unnamed protein product [Aspergillus niger]
Length = 188
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 5/130 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
++ + NRP+SPHL IYR T S +HRITG + + + L S
Sbjct: 59 LAQQRLNRPVSPHLSIYRPQITWIGSSIHRITGIALSGSLYLYASAYLASPMLGWDLGSA 118
Query: 61 RCYMDGSVFEVC-----LFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ V +H + G+R+LIWD L + + S
Sbjct: 119 SAAAAFAALPVVAKVALKTTMALPFTYHCMNGVRHLIWDTGAGLTNPQVIKSGWTVVGLS 178
Query: 116 ILTVLIVWII 125
L+ LI+ +
Sbjct: 179 TLSALILAFL 188
>gi|325093799|gb|EGC47109.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
capsulatus H88]
Length = 187
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 5/130 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVY-----LGTPVVVFWFFCIANGEH 55
+ + NRP+SPHL IY+ T +S +RITG + + +V
Sbjct: 58 LPQQRLNRPVSPHLSIYQPQITWILSSTNRITGVALSGSLYIFASAYLVAPLLGWHLESA 117
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
++++ + + F H G R+L+WD+ K + +
Sbjct: 118 SIAAAFAGLPLAAKFCLKFAAALPFTFHSFNGCRHLVWDMGKQFTNKQVIVTGWTVVGLT 177
Query: 116 ILTVLIVWII 125
+ + L + +
Sbjct: 178 VSSALALAFL 187
>gi|295841399|dbj|BAJ07113.1| succinate dehydrogenase subunit C [Corynespora cassiicola]
Length = 177
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 45/125 (36%), Gaps = 5/125 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS- 59
++ + RP+SPHL IYR T + S +RITG + G + F + L +
Sbjct: 47 LAKQRIQRPVSPHLSIYRPQITWYASSFNRITGVALSGGLYLFGFAYLAAPTLGWHLETQ 106
Query: 60 ----LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ H L G+R+L WD+ L K Q I S
Sbjct: 107 SMVAAVAAWPVAAKVAAKISIAMPFFFHSLNGLRHLSWDIGLGFKNKAVIQTGWSVIALS 166
Query: 116 ILTVL 120
L
Sbjct: 167 AAATL 171
>gi|167522351|ref|XP_001745513.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775862|gb|EDQ89484.1| predicted protein [Monosiga brevicollis MX1]
Length = 178
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 53/124 (42%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+ K NRP+SPHL IYR +SI HR++G+ + + + +
Sbjct: 55 KNDKLNRPMSPHLTIYRFPLPAILSISHRVSGAALTMAISAAAIGLMVHPLSFYIDAVQA 114
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + F L + +H + G+R+L WD + L+ + + +++ +
Sbjct: 115 MQLPAACFFTTKTLLAFPFTYHTVNGLRHLFWDTAKGLELGPVYSSGYMMVGLGLVSAVG 174
Query: 122 VWII 125
+ ++
Sbjct: 175 LAML 178
>gi|242021634|ref|XP_002431249.1| succinate dehydrogenase, cytochrome B560 subunit [Pediculus humanus
corporis]
gi|212516503|gb|EEB18511.1| succinate dehydrogenase, cytochrome B560 subunit [Pediculus humanus
corporis]
Length = 220
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR- 61
+++ RP SPHL IY+ +SI HR TG ++ G V F + + + L ++
Sbjct: 30 NMRLCRPTSPHLTIYKFELPAVLSISHRFTGIIL--GGYAVTFATVSLLSSKPMLDVVQR 87
Query: 62 -CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASIL 117
+ F + + +H G+R+L+WD L K ++A+ +
Sbjct: 88 ISHCYPGFFLIFKVGLIFPFTYHFFNGVRHLVWDNGKSLSLKGVYISGYTMLMAAAI 144
>gi|53804146|ref|YP_114003.1| succinate dehydrogenase, cytochrome b556 subunit [Methylococcus
capsulatus str. Bath]
gi|53757907|gb|AAU92198.1| putative succinate dehydrogenase, cytochrome b556 subunit
[Methylococcus capsulatus str. Bath]
Length = 138
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 52/98 (53%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ+YRL T +SI HRITG ++ +G +V + G + + ++
Sbjct: 14 RERPLSPHLQVYRLPVTALLSISHRITGVLLGIGLIGLVLVLMSVVQGPSAYAPVHAFLS 73
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKI 103
G L+++ A++ H+ GIR+L+WD +
Sbjct: 74 GIAGRSLLWIWITALLFHLSHGIRHLVWDTGHGFSRDS 111
>gi|225717882|gb|ACO14787.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Caligus clemensi]
Length = 173
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 1/121 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+ + NRP+SPHL IY+ T +SI HRI+G + F F + + T
Sbjct: 51 KNKRLNRPMSPHLTIYKPQLTSMLSISHRISGMYLTAILYSGGFLPFVLPSNFPTFIQSI 110
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ F + H G+R+L+WD+ + + S++T +I
Sbjct: 111 EIAP-LLVTAGKFAIAFPFAIHTYNGLRHLLWDMGYGFKISEVYSSGAMVLAFSLITAII 169
Query: 122 V 122
+
Sbjct: 170 L 170
>gi|16127759|ref|NP_422323.1| succinate dehydrogenase, cytochrome b556 subunit [Caulobacter
crescentus CB15]
gi|221236580|ref|YP_002519017.1| succinate dehydrogenase cytochrome B-556 subunit [Caulobacter
crescentus NA1000]
gi|13425261|gb|AAK25491.1| succinate dehydrogenase, cytochrome b556 subunit [Caulobacter
crescentus CB15]
gi|220965753|gb|ACL97109.1| succinate dehydrogenase cytochrome B-556 subunit [Caulobacter
crescentus NA1000]
Length = 135
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 57/121 (47%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RP+SPHLQ++R TM SI+HR +++G ++ W +A G +S +
Sbjct: 10 ERPMSPHLQVWRWHITMACSILHRGCVVGLWVGAVILAGWAAALAAGPDAYASYVGLLGS 69
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
+ ++ L T+AV ++ IR WD + A + I +++ ++ W+I
Sbjct: 70 PIGKLVLLGETFAVFFNVAYTIRQTFWDAGKGFAPRTADMTGAMAIAFAVVATIVTWVIA 129
Query: 127 D 127
Sbjct: 130 G 130
>gi|323498611|ref|ZP_08103603.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio sinaloensis DSM 21326]
gi|323316309|gb|EGA69328.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio sinaloensis DSM 21326]
Length = 130
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 59/121 (48%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HR++G + ++ ++++ + + +
Sbjct: 8 RKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSISLSSPVGYAQAVDIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
DG + L+ A+ +H+ GGIR+L+ D+ + + AK+ A+ + L+ I
Sbjct: 68 DGFFVKFILWGILTALAYHIAGGIRHLLMDLGHFEELESGAMSAKVAFAATAVLSLLAGI 127
Query: 125 I 125
+
Sbjct: 128 M 128
>gi|195452088|ref|XP_002073207.1| GK13274 [Drosophila willistoni]
gi|194169292|gb|EDW84193.1| GK13274 [Drosophila willistoni]
Length = 174
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT-PVVVFWFFCIANGEHTLSSL 60
+ + R +SPHL IY+ T +SI HR TG + +G + + + H ++ +
Sbjct: 49 KNERLGRKVSPHLTIYQPQLTSILSITHRGTGMALGVGVWALGLGALISSHDISHYVTIV 108
Query: 61 RCY-MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ + F+ + H GIR+L+WD L K + AS +
Sbjct: 109 EGLQLSDAQLTAIKFIIAYPAGFHTANGIRHLLWDTGRFLKIKEVYSTGYAMLAASFVLS 168
Query: 120 LIVWII 125
I+ ++
Sbjct: 169 GILALL 174
>gi|323529177|ref|YP_004231329.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
CCGE1001]
gi|323386179|gb|ADX58269.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
CCGE1001]
Length = 138
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 2 SSIKNNRPLSPH------LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
++K RP + L YRL VSI+HR++G ++++ P +++ F E
Sbjct: 3 EAVKKPRPEFRNIGIGQILTAYRLPLAGRVSILHRVSGGLLFVALPFLLYLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIA 114
+ + + + ++ + + WA + H G+R+L+ D + + K+ Q + + +
Sbjct: 63 SFEGFKGFFSNLIVKLIVLVLAWAYMFHFCAGVRHLLMDTNHEAVTKEKGKQTSIVVFVV 122
Query: 115 SILTVLIVWI 124
S L L +
Sbjct: 123 SSLLTLAFAL 132
>gi|68466667|ref|XP_722529.1| hypothetical protein CaO19.1480 [Candida albicans SC5314]
gi|68466950|ref|XP_722390.1| hypothetical protein CaO19.9055 [Candida albicans SC5314]
gi|46444361|gb|EAL03636.1| hypothetical protein CaO19.9055 [Candida albicans SC5314]
gi|46444509|gb|EAL03783.1| hypothetical protein CaO19.1480 [Candida albicans SC5314]
gi|238881974|gb|EEQ45612.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 176
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 5/123 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS- 59
+ + + NRP SPHLQIY T +S HRITG + + F + +
Sbjct: 46 LVAQRKNRPTSPHLQIYEPQLTWIMSSFHRITGVAMAGAFYALTCGFAATSILNIPFDTT 105
Query: 60 --LRCYMDGSVFE--VCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ + F + + ++H+ GIR+L+WD L + + A+
Sbjct: 106 TLVSAFTTLPTFAQYGIKAICAYPFVYHIGNGIRHLVWDFGKELTIPGVYRTGYAVLAAT 165
Query: 116 ILT 118
+
Sbjct: 166 AVI 168
>gi|194743886|ref|XP_001954429.1| GF18258 [Drosophila ananassae]
gi|190627466|gb|EDV42990.1| GF18258 [Drosophila ananassae]
Length = 152
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT-PVVVFWFFCIANGEHTLSSL 60
+ + R LSPHL IY T +SI+HR TG + G + V + H + +
Sbjct: 27 KNERLGRKLSPHLTIYSPQLTSMLSIMHRGTGLALGAGVWALGVGALISSHDINHYATMV 86
Query: 61 RCY-MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G+ F+ + V +H GIR+L+WD L K + S +
Sbjct: 87 EGLQLSGATLTALKFIIAYPVGYHTANGIRHLLWDTGRFLKIKEVYSTGYAMVATSFILT 146
Query: 120 LIVWII 125
I+ ++
Sbjct: 147 AILALL 152
>gi|212535344|ref|XP_002147828.1| succinate dehydrogenase cytochrome b560 subunit [Penicillium
marneffei ATCC 18224]
gi|210070227|gb|EEA24317.1| succinate dehydrogenase cytochrome b560 subunit [Penicillium
marneffei ATCC 18224]
Length = 186
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 13/131 (9%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPV---------VVFWFFCIA 51
++ + RP+SPHL IYR T + S +HRITGS V W A
Sbjct: 57 LAEQRLKRPVSPHLSIYRPQITWYASALHRITGSAASGALYAFAAAYLVAPVFGWHLESA 116
Query: 52 NGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN 111
+ +L +H + G+R+LIWD L K Q
Sbjct: 117 SIAAAFGALPFAAKFF----VKLGLAMPFTYHCINGVRHLIWDTGRLLTNKQVIQTGWTM 172
Query: 112 IIASILTVLIV 122
I S ++ + +
Sbjct: 173 IGLSTISAVAL 183
>gi|92113339|ref|YP_573267.1| succinate dehydrogenase subunit C [Chromohalobacter salexigens DSM
3043]
gi|91796429|gb|ABE58568.1| succinate dehydrogenase subunit C [Chromohalobacter salexigens DSM
3043]
Length = 125
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR-C 62
+ + RP++ L + SI HRITG ++++G + + ++R
Sbjct: 1 MNSKRPVNLDLTTIKFPLPALTSIAHRITGIILFIGLIFGFWALDVSLSSPEGFEAVRDT 60
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI- 121
+ + ++ + A+ H + GI++L+ D + +D + + A+I ++ S + V++
Sbjct: 61 LANNVLAKLIAWGLLSALGFHFVAGIKHLLMDAGIGVDLEGGYRKAQITVVISAILVVLA 120
Query: 122 -VWI 124
VW+
Sbjct: 121 GVWV 124
>gi|70729104|ref|YP_258840.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
fluorescens Pf-5]
gi|68343403|gb|AAY91009.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
fluorescens Pf-5]
Length = 128
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++ + RP++ L+ +L T S +HR++G +++LG ++++ E + ++
Sbjct: 3 KAVNSQRPVNLDLRTIKLPITGVTSFLHRVSGIILFLGIGIMLYALSKSLGSEEGYAEVK 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + + + A+++H++ G+R+LI D+ + + +KI I S++ +++
Sbjct: 63 ACLTSPLAKFVAWGLLSALLYHLVAGVRHLIMDMGIGETLEGGKLGSKIVIAVSVVVIVL 122
Query: 122 --VWI 124
VWI
Sbjct: 123 AGVWI 127
>gi|2623844|gb|AAB86570.1| unknown [Schistosoma mansoni]
Length = 198
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 2/126 (1%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVY-LGTPVVVFWFFCIANGEHTLSSLR 61
+ RP SPHLQ+Y M S +HR TG + + + V + FF + + L +R
Sbjct: 72 NATEKRPWSPHLQVYSSPLVMRFSFLHRATGIAMAIVWSSVGIGAFFFTGHYDSILDYVR 131
Query: 62 -CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
++ SV C F+ + +++H L G+R+L WD ++ K I + +S++
Sbjct: 132 NMHLGTSVIAACKFILCYPLVYHYLNGMRHLAWDYAIGFPIKTCNTTGFIALGSSLVISA 191
Query: 121 IVWIIK 126
I+ I+
Sbjct: 192 ILACIR 197
>gi|221129025|ref|XP_002164804.1| PREDICTED: similar to succinate dehydrogenase complex, subunit C
[Hydra magnipapillata]
Length = 186
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVY-LGTPVVVFWFFCIANGEHTLSSL 60
+ + RPLSPH+ IY+ +S HR TG + + V E + +
Sbjct: 57 KNDRMQRPLSPHITIYKFELPGLLSGTHRFTGLAMSGIVFTVGSAALLLPGGAESYIDMI 116
Query: 61 RCY-MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
R + V L + + +H + G+R+LIWD + K + + SI
Sbjct: 117 RALNLPIWVLAPAKCLIAFPLCYHTVNGVRHLIWDTGRGFEMKTLYKTGYFAVATSIALT 176
Query: 120 LIV 122
+ +
Sbjct: 177 IGI 179
>gi|226330952|ref|ZP_03806470.1| hypothetical protein PROPEN_04875 [Proteus penneri ATCC 35198]
gi|225201747|gb|EEG84101.1| hypothetical protein PROPEN_04875 [Proteus penneri ATCC 35198]
Length = 130
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
K RP++ LQ + SI+HR++G ++ + ++++ + M
Sbjct: 7 KKQRPVNLDLQTIQFPLPAIASILHRVSGVIMLVAVGILLWLLGTSLSSPEGFQQAAEIM 66
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-----CLDKKIATQMAKINIIASILTV 119
G + L+ A+ +H+ GGIR+++ D + + A I +I SIL
Sbjct: 67 TGFFAKFILWGILTALAYHICGGIRHMLMDFGFIDETLIVGRNSAAASMVITVILSILAG 126
Query: 120 LIVW 123
++VW
Sbjct: 127 VLVW 130
>gi|322833847|ref|YP_004213874.1| succinate dehydrogenase, cytochrome b556 subunit [Rahnella sp.
Y9602]
gi|321169048|gb|ADW74747.1| succinate dehydrogenase, cytochrome b556 subunit [Rahnella sp.
Y9602]
Length = 129
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 3 KTVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSLSSPEGFAHAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASILTVL 120
M+ + + A+ +H+ GG+R+L+ D + T+ A++ I +++ +
Sbjct: 63 AIMNSFFVKFIFWGILTALAYHVCGGVRHLLMDFGYIEESLAAGTRSAQVAIGLTVVLSI 122
Query: 121 IVWII 125
+ ++
Sbjct: 123 LAGVL 127
>gi|261341308|ref|ZP_05969166.1| succinate dehydrogenase, cytochrome b556 subunit [Enterobacter
cancerogenus ATCC 35316]
gi|288316612|gb|EFC55550.1| succinate dehydrogenase, cytochrome b556 subunit [Enterobacter
cancerogenus ATCC 35316]
Length = 134
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ L+ R T SI+HR++G + ++ ++++ +
Sbjct: 9 NVKKQRPVNLDLKTIRFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFLQASA 68
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-----KKIATQMAKINIIASIL 117
M+ + ++ A+ +H++GG+R+++ D + K+ A + ++ SIL
Sbjct: 69 IMNSFFVKFIMWGILTALAYHVVGGVRHMLMDFGYLEETFEAGKRSANISFVLTVVLSIL 128
Query: 118 TVLIVW 123
++VW
Sbjct: 129 AGVLVW 134
>gi|254524825|ref|ZP_05136880.1| succinate dehydrogenase, cytochrome b556 subunit [Stenotrophomonas
sp. SKA14]
gi|219722416|gb|EED40941.1| succinate dehydrogenase, cytochrome b556 subunit [Stenotrophomonas
sp. SKA14]
Length = 117
Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 51/108 (47%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YR M SI+HR TG + +G ++ + G + + + V LF +
Sbjct: 2 YRWQIQMATSILHRATGVFLSVGALIIAAGLLALMMGPESWNCFTGHAGAWYGRVFLFAW 61
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
TW+ +H+ GIR+++ D ++ + + +++ S++ L+VW
Sbjct: 62 TWSFAYHLCNGIRHVVQDFAIGFSIPAFIRSSWLSVTGSLVITLLVWA 109
>gi|33593355|ref|NP_880999.1| succinate dehydrogenase cytochrome B subunit [Bordetella pertussis
Tohama I]
gi|33597755|ref|NP_885398.1| succinate dehydrogenase cytochrome B subunit [Bordetella
parapertussis 12822]
gi|33602657|ref|NP_890217.1| succinate dehydrogenase cytochrome B subunit [Bordetella
bronchiseptica RB50]
gi|33572711|emb|CAE42635.1| succinate dehydrogenase cytochrome B subunit [Bordetella pertussis
Tohama I]
gi|33574184|emb|CAE38515.1| succinate dehydrogenase cytochrome B subunit [Bordetella
parapertussis]
gi|33577099|emb|CAE35655.1| succinate dehydrogenase cytochrome B subunit [Bordetella
bronchiseptica RB50]
gi|332382764|gb|AEE67611.1| succinate dehydrogenase cytochrome B subunit [Bordetella pertussis
CS]
Length = 137
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 3 SIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA-NGEHT 56
S RP ++ + YRL +SI+HRI+G++++L P+V+ F + +
Sbjct: 4 SAAKPRPQFRNISVPQILSYRLPLAGKLSILHRISGALLFLCLPLVIVPLFAASVTSPES 63
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ + Y + ++ L W +HH GIRYL+ D+ + LDK A + A + S+
Sbjct: 64 YAQVAQYAANPLVKLVLLALIWGYLHHFCAGIRYLVLDLHIGLDKVSAQKSAGVAFGVSL 123
Query: 117 LTVLIVWI 124
L+ +
Sbjct: 124 ALTLVFGL 131
>gi|320168382|gb|EFW45281.1| succinate dehydrogenase cytochrome b subunit [Capsaspora owczarzaki
ATCC 30864]
Length = 159
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTP-VVVFWFFCIANGEHTLSSL 60
+ RPLSPHL IYR T +SI HR TG+ + V+ + + + + +
Sbjct: 34 KNKALGRPLSPHLTIYRPQLTSVLSITHRATGAAMTFAISTAAVYSALSVHDFAYNIDLV 93
Query: 61 RCYMDGSVFEV-CLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
R SV + ++ W +++H L GIR+L+WD L K I S++
Sbjct: 94 RSLDLPSVVTLTAKYILAWPLVYHSLNGIRHLVWDSGRALVLKDTYLGGYIVFGLSLVGA 153
Query: 120 LIVWII 125
++ ++
Sbjct: 154 SLLTLL 159
>gi|85058850|ref|YP_454552.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Sodalis glossinidius str. 'morsitans']
gi|84779370|dbj|BAE74147.1| succinate dehydrogenase cytochrome b-556 subunit [Sodalis
glossinidius str. 'morsitans']
Length = 128
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 58/125 (46%), Gaps = 1/125 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ LQ R T VSI+HR++G ++++ ++++ +
Sbjct: 3 KTVKKQRPVNLDLQTIRFPVTAIVSILHRVSGVIMFVAIGILLWVLGLSLSSPEGFIQAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASILTVL 120
MD + + + A+ +H L GIR+++ D + + A + + +++ +
Sbjct: 63 AMMDSFIVKFIFWGILTALAYHTLCGIRHMLMDFGYLEETLAMGKTTANVTFLLTVVLSI 122
Query: 121 IVWII 125
+ ++
Sbjct: 123 LAGVL 127
>gi|167624415|ref|YP_001674709.1| succinate dehydrogenase cytochrome b556 subunit [Shewanella
halifaxensis HAW-EB4]
gi|167354437|gb|ABZ77050.1| Succinate dehydrogenase cytochrome b556 subunit [Shewanella
halifaxensis HAW-EB4]
Length = 124
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 57/121 (47%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP+ +LQ R T SI+HR++G ++ ++++ + + ++
Sbjct: 1 MKKQRPVHLNLQTIRFPATAIASILHRVSGVIMLFAVGILIWLLNESLASAESFAGVQSL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
D + + ++ A+ +H++ G+R+L+ D + AK+ I S++ +I
Sbjct: 61 FDNFIVKFIVWGILTALGYHLIVGLRHLVMDAGYWEELSSGLTSAKVAIGLSVVFSIIAG 120
Query: 124 I 124
I
Sbjct: 121 I 121
>gi|307726616|ref|YP_003909829.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
CCGE1003]
gi|307587141|gb|ADN60538.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
CCGE1003]
Length = 138
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 2 SSIKNNRPLSPH------LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
++K RP + L YRL VSI+HR++G ++++ P +++ F E
Sbjct: 3 EAVKKPRPEFRNIGIGQILTAYRLPLAGRVSILHRVSGGLLFVALPFLLYLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIA 114
+ + + + ++ + + WA + H G+R+L+ D + + K+ Q + + +
Sbjct: 63 SFEGFKAFFSNIIVKLIVLVLGWAYMFHFCAGVRHLLMDTNHEAVTKEKGRQTSIVVFVV 122
Query: 115 SILTVLIVWI 124
S L L +
Sbjct: 123 SSLLTLAFAL 132
>gi|209954769|dbj|BAG80575.1| succinate dehydrogenase C subunit [Aspergillus oryzae]
gi|209954771|dbj|BAG80576.1| succinate dehydrogenase C subunit [Aspergillus oryzae]
Length = 188
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 5/130 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI-ANGEHTLSS 59
++ + NRP+SPHL IYR T S HRI G + + + G H S+
Sbjct: 59 LAQQRLNRPVSPHLSIYRPQITWIGSSFHRIIGFALSGSLYLYATAYLASPLLGWHLESA 118
Query: 60 LRCYMDGSVFEVCLFLY----TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
++ V L +H G+R+L+WD+ + + + + S
Sbjct: 119 SVAAAFAALPIVAKVLLKGFMALPFTYHCFNGVRHLVWDLGRGITNQQVIKSGWTVVGLS 178
Query: 116 ILTVLIVWII 125
+L+ L + +
Sbjct: 179 VLSALALAFL 188
>gi|304445630|pdb|2WU2|C Chain C, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
gi|304445634|pdb|2WU2|G Chain G, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
gi|304445638|pdb|2WU2|K Chain K, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
Length = 129
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 22/124 (17%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ +
Sbjct: 4 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASA 63
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASILTVLI 121
M + ++ A+ + ++ GIR+++ D + + + AKI+ + +++ L+
Sbjct: 64 IMGSFFVKFIMWGILTALAYMVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLL 123
Query: 122 VWII 125
++
Sbjct: 124 AGVL 127
>gi|103488506|ref|YP_618067.1| succinate dehydrogenase, cytochrome b subunit [Sphingopyxis
alaskensis RB2256]
gi|98978583|gb|ABF54734.1| succinate dehydrogenase subunit C [Sphingopyxis alaskensis RB2256]
Length = 147
Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVY-LGTPVVVFWFFCIANGEHTLSSLRCYM-- 64
RP SPHLQ+Y+ P M VSI HR++G + +G + ++W +A G ++ +
Sbjct: 9 RPRSPHLQVYKWTPAMAVSIFHRVSGDGLAIVGAGMFLWWLGALAAGPDAYAAFVACVWH 68
Query: 65 ----------DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
+ ++ L TWA H+ G+R+ + D + + + + +
Sbjct: 69 DPDAGTFHQVTNILGKIVLIGLTWAFFQHLFSGLRHFVLDAGAGYELRTNRLWSTLVFVG 128
>gi|119897840|ref|YP_933053.1| succinate dehydrogenase [Azoarcus sp. BH72]
gi|119670253|emb|CAL94166.1| succinate dehydrogenase [Azoarcus sp. BH72]
Length = 129
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 61/122 (50%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
+++ RP + RL VSI+HR++G+ ++L P +++ + ++
Sbjct: 5 TVRKQRPKHLAINEIRLPLPGIVSILHRVSGAGLFLLLPFLLYLLDRSLGSPESFATFEA 64
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + ++ L WA +HH GIR+L+ D+ L+ + A ++I ++ SI +I+
Sbjct: 65 VVGHPLVKLILIGLLWAFLHHFCAGIRFLLLDLHKGLELQAARNSSRIVLVVSIALTVII 124
Query: 123 WI 124
+
Sbjct: 125 GV 126
>gi|209694421|ref|YP_002262349.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Aliivibrio salmonicida LFI1238]
gi|208008372|emb|CAQ78527.1| succinate dehydrogenase cytochrome b556 subunit [Aliivibrio
salmonicida LFI1238]
Length = 133
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 64/125 (51%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ +K +RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 7 LVKVKKSRPVNLDLQTIRFPITAIASILHRVSGVITFVSVGILLWLLNLSLSSPIGFAQA 66
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
++DG ++ A+ +H++ GIR+L+ D+ + + A+Q AKI + + + L
Sbjct: 67 ADHIDGFFVTFIMWGILTALAYHIVVGIRHLLMDMGHFEELESASQSAKIAFVITAVLSL 126
Query: 121 IVWII 125
+ ++
Sbjct: 127 LAGVL 131
>gi|325089641|gb|EGC42951.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
capsulatus H88]
Length = 194
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI-ANGEHTLSS 59
+ + NRP+SPH+ IYR T +S++HR TG ++ + + G H S+
Sbjct: 58 LRKQRLNRPVSPHISIYRPQITSVLSLLHRNTGLLLSGPFYLFFAAYAASPWLGWHIDST 117
Query: 60 LRCYMDGSVFEVCLFLY----TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
G + L H + G+R+L+WD+ K + + I S
Sbjct: 118 SMAASFGILPVAAKVLLKTTAALPFTFHCINGVRHLVWDLGRGFSNKQVAKSGRTVIGLS 177
Query: 116 ILTVLIV 122
I + L++
Sbjct: 178 ISSALLL 184
>gi|323529267|ref|YP_004231419.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
CCGE1001]
gi|323386269|gb|ADX58359.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
CCGE1001]
Length = 138
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 2 SSIKNNRPLSPH------LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
++K RP + L YRL VSI+HR++G ++++ P +++ F E
Sbjct: 3 ETLKKPRPEFRNIGIGQILTAYRLPLAGRVSILHRVSGGLLFVALPFLLYLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIA 114
+ + + + ++ + + WA + H G+R+L+ D + + K+ Q + + +
Sbjct: 63 SFEGFKGFFSNLIVKLIVLVLAWAYMFHFCAGVRHLLMDTNHEAVTKEKGKQTSIVVFVV 122
Query: 115 SILTVLIVWI 124
S L L +
Sbjct: 123 SSLLTLAFAL 132
>gi|254786526|ref|YP_003073955.1| succinate dehydrogenase, cytochrome b556 subunit [Teredinibacter
turnerae T7901]
gi|237685297|gb|ACR12561.1| succinate dehydrogenase, cytochrome b556 subunit [Teredinibacter
turnerae T7901]
Length = 124
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K NRP++ + +L T +VSI+HR++G V+ G V+++ E + L+
Sbjct: 1 MKTNRPVNLDISTIKLPVTAYVSILHRVSGVVLLAGVLVLLYMLDMSLTSEESFDELKEL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
+ + ++ L+ A+ +H + G+R+LI D + + + AK+ ++ +I+ ++
Sbjct: 61 LASPLAKIVLWGVLSALAYHFVAGVRHLIMDAGVGESLEGGKRGAKVALVLAIVLIIAAG 120
Query: 122 VWI 124
VW+
Sbjct: 121 VWV 123
>gi|295841401|dbj|BAJ07114.1| succinate dehydrogenase subunit C [Corynespora cassiicola]
Length = 177
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 45/125 (36%), Gaps = 5/125 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS- 59
++ + RP+SPHL IYR T + S +RITG + G + F + L +
Sbjct: 47 LAKQRIQRPVSPHLSIYRPQITWYASPFNRITGVALSGGLYLFGFAYLAAPTLGWHLETQ 106
Query: 60 ----LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ H L G+R+L WD+ L K Q I S
Sbjct: 107 SMVAAVAAWPVAAKVAAKISIAMPFFFHSLNGLRHLSWDIGLGFKNKAVIQTGWSVIALS 166
Query: 116 ILTVL 120
L
Sbjct: 167 AAATL 171
>gi|27363644|ref|NP_759172.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio vulnificus CMCP6]
gi|37679212|ref|NP_933821.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio vulnificus YJ016]
gi|27359760|gb|AAO08699.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio vulnificus
CMCP6]
gi|37197955|dbj|BAC93792.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio vulnificus
YJ016]
Length = 130
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 57/121 (47%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 8 RKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSISLSSPVGFMEASDIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
D + L+ A+ +H+ GGIR+L+ D+ + + AK+ A+ + L+ I
Sbjct: 68 DSFFVKFILWGILTALAYHIAGGIRHLMMDLGHFEELESGAMSAKVAFAATAVLSLLAGI 127
Query: 125 I 125
+
Sbjct: 128 L 128
>gi|157369506|ref|YP_001477495.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Serratia proteamaculans 568]
gi|270263768|ref|ZP_06192037.1| succinate dehydrogenase, cytochrome b556 subunit [Serratia
odorifera 4Rx13]
gi|157321270|gb|ABV40367.1| Succinate dehydrogenase cytochrome b556 subunit [Serratia
proteamaculans 568]
gi|270042652|gb|EFA15747.1| succinate dehydrogenase, cytochrome b556 subunit [Serratia
odorifera 4Rx13]
Length = 129
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ LQ + T SI+HR++G + ++ ++++ + +
Sbjct: 3 KNVKKQRPVNLDLQTIQFPVTAIASILHRVSGVITFVAVGILLWLLGLSLSSQEGFMQAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASILTVL 120
M+ V + + A+ +H+ GGIR+L+ D + T+ A++ I +++ +
Sbjct: 63 AIMNSFVVKFIFWGILTALAYHICGGIRHLLMDFGYIEESLAAGTRSAQVAIGLTVVLSV 122
Query: 121 IVWII 125
+ ++
Sbjct: 123 LAGVL 127
>gi|240279376|gb|EER42881.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
capsulatus H143]
Length = 188
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI-ANGEHTLSS 59
+ + NRP+SPH+ IYR T +S++HR TG ++ + + G H S+
Sbjct: 52 LRKQRLNRPVSPHISIYRPQITSVLSLLHRNTGLLLSGPFYLFFAAYAASPWLGWHIDST 111
Query: 60 LRCYMDGSVFEVCLFLY----TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
G + L H + G+R+L+WD+ K + + I S
Sbjct: 112 SMAASFGILPVAAKVLLKTTAALPFTFHCINGVRHLVWDLGRGFSNKQVAKSGRTVIGLS 171
Query: 116 ILTVLIV 122
I + L++
Sbjct: 172 ISSALLL 178
>gi|183598172|ref|ZP_02959665.1| hypothetical protein PROSTU_01551 [Providencia stuartii ATCC 25827]
gi|188020339|gb|EDU58379.1| hypothetical protein PROSTU_01551 [Providencia stuartii ATCC 25827]
Length = 129
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 55/123 (44%), Gaps = 1/123 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ T SI+HR++G + ++ ++++ + +
Sbjct: 5 VKKQRPVNLDLQTIHFPITAISSILHRVSGVITFIAVGILLWLLGTSLSSPEGFQYVSEI 64
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLC-LDKKIATQMAKINIIASILTVLIV 122
M G + L+ A+ +H+ GGIR+++ D AKI + +++ ++
Sbjct: 65 MTGFFAKFILWGILTALAYHICGGIRHMLMDFGWVDETLAAGNSSAKITFVITVVLAILA 124
Query: 123 WII 125
I+
Sbjct: 125 GIL 127
>gi|261252260|ref|ZP_05944833.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio orientalis
CIP 102891]
gi|260935651|gb|EEX91640.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio orientalis
CIP 102891]
Length = 130
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 59/121 (48%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HR++G + ++ ++++ + + +
Sbjct: 8 RKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSISLSSPVGYAQAVDIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
DG L+ A+ +H++GGIR+L+ D+ + + AK+ A+ + L+ I
Sbjct: 68 DGFFVTFILWGILTALAYHIVGGIRHLLMDLGHFEELESGAMSAKVAFAATAVLSLLAGI 127
Query: 125 I 125
+
Sbjct: 128 M 128
>gi|296414660|ref|XP_002837016.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295632864|emb|CAZ81207.1| unnamed protein product [Tuber melanosporum]
Length = 182
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 5/125 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV-----YLGTPVVVFWFFCIANGEH 55
+++ + RP+SPHL IY+ T +S +RITG+++ +V +
Sbjct: 53 LNAQRKLRPISPHLTIYQPQITSLMSGANRITGAILSTSAYAFAIGYLVAPTLGLHLESQ 112
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
T++ M + + +H G+R+LIWD LD K + + +
Sbjct: 113 TIAEAFGAMPDATKIGIKGVLALPFTYHAWNGVRHLIWDTGKLLDIKGVYTGGYVVLGLT 172
Query: 116 ILTVL 120
L+ +
Sbjct: 173 CLSTI 177
>gi|197284462|ref|YP_002150334.1| succinate dehydrogenase cytochrome b-556 subunit [Proteus mirabilis
HI4320]
gi|227356640|ref|ZP_03841026.1| succinate dehydrogenase cytochrome b-556 subunit [Proteus mirabilis
ATCC 29906]
gi|194681949|emb|CAR41360.1| succinate dehydrogenase cytochrome b-556 subunit [Proteus mirabilis
HI4320]
gi|227163148|gb|EEI48079.1| succinate dehydrogenase cytochrome b-556 subunit [Proteus mirabilis
ATCC 29906]
Length = 125
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ + SI+HR++G ++ + ++++ +
Sbjct: 1 MKKQRPVNLDLQTIQFPLPAIASILHRVSGVIMLVAVGILLWLLGTSLSSPEGFQQAADI 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-----CLDKKIATQMAKINIIASILT 118
M G + L+ A+ +H+ GGIR+++ D + ++ A I +I SIL
Sbjct: 61 MTGFFAKFILWGILTALAYHICGGIRHMLMDFGFIDETLVVGRRSAAISMIITVILSILA 120
Query: 119 VLIVW 123
++VW
Sbjct: 121 GVLVW 125
>gi|82701992|ref|YP_411558.1| succinate dehydrogenase, cytochrome b subunit [Nitrosospira
multiformis ATCC 25196]
gi|82410057|gb|ABB74166.1| succinate dehydrogenase subunit C [Nitrosospira multiformis ATCC
25196]
Length = 125
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYL-GTPVVVFWFFCIANGEHTLSSLRC 62
+ RP L R +SI+HRI+G++++ G P+V+ + L+
Sbjct: 1 MPKKRPKYLDLLKIRQPLPAVISILHRISGALLFFPGIPLVLCGLDMALGSSEDYARLQS 60
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+++ + + L L W +HH GIRYL D+ + + A +K+ + A I+ L+
Sbjct: 61 FLNNPMAKFGLILALWFFLHHFCAGIRYLALDLHYGVKLEQARLSSKVVVGAGIVLTLLT 120
Query: 123 WII 125
+
Sbjct: 121 GAV 123
>gi|156376569|ref|XP_001630432.1| predicted protein [Nematostella vectensis]
gi|156217453|gb|EDO38369.1| predicted protein [Nematostella vectensis]
Length = 169
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+ + RP+SP L Y+ +S HR+TG ++ GT + + G ++
Sbjct: 43 KNERLKRPMSPFLLTYKFEFPALLSGSHRVTGVIMTTGTTIFALCALGLPEGLEHYVNVI 102
Query: 62 --CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN 111
+ C L W V +H L G+R+L WD+ + K + +
Sbjct: 103 KGWELPRPFIFTCKTLLAWPVCYHGLNGLRHLFWDIGKGFEIKTLYKTGTVV 154
>gi|225683516|gb|EEH21800.1| succinate dehydrogenase [Paracoccidioides brasiliensis Pb03]
Length = 188
Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 5/130 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSS 59
+ + NRP+SPHL IY+ T +S ++RITG + + F+ G H S
Sbjct: 58 LPRQRLNRPVSPHLSIYQPQVTWVLSSLNRITGVALAGSLYIFSSFYLVSPLLGWHLESH 117
Query: 60 LRCYMDGSVFEVCLFLYTW----AVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ G++ + + H L G R+LIWD+ K + +
Sbjct: 118 VIAAAFGALPLAAKVGLKFTAAVPFMFHALNGCRHLIWDLGKQFSNKQVIAGGWTVVGLT 177
Query: 116 ILTVLIVWII 125
+ + L +
Sbjct: 178 LSSALALACF 187
>gi|261202338|ref|XP_002628383.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
dermatitidis SLH14081]
gi|239590480|gb|EEQ73061.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
dermatitidis SLH14081]
gi|239612206|gb|EEQ89193.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
dermatitidis ER-3]
gi|327353150|gb|EGE82007.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
dermatitidis ATCC 18188]
Length = 187
Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 5/127 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVV-FWFFCIANGEHTLSS 59
+ + NRP+SPHL IY+ T +S ++RITG + G + + G H S+
Sbjct: 58 LPRQRLNRPVSPHLSIYQPQITWLLSSLNRITGVALAGGMYIFASAYLVSPLLGWHLESA 117
Query: 60 LRCYMDGSVFEVCLFLY----TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
G++ H G R+LIWD+ K + +
Sbjct: 118 SLVAAFGALPLAAKVGLKFTAALPFTFHSFNGCRHLIWDMGKQFSNKQVIVTGWTVVGLT 177
Query: 116 ILTVLIV 122
+ + L +
Sbjct: 178 VTSALAL 184
>gi|127512580|ref|YP_001093777.1| succinate dehydrogenase, cytochrome b subunit [Shewanella loihica
PV-4]
gi|126637875|gb|ABO23518.1| succinate dehydrogenase subunit C [Shewanella loihica PV-4]
Length = 131
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP+ LQ R T SI+HR++G ++ ++++ + + ++
Sbjct: 6 QNVKKQRPVHLDLQTIRFPATAIASILHRVSGVIMLFAVGILIWLLSESLASAESFAGIQ 65
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA----SIL 117
D + + ++ A+ +H++ G+R+LI D + + AK + SI+
Sbjct: 66 SLFDTFIVKFVVWGILTALGYHLIVGLRHLIMDTGRWEELESGNASAKAAFVIAAAWSII 125
Query: 118 TVLIVW 123
+ VW
Sbjct: 126 AGIWVW 131
>gi|163802540|ref|ZP_02196432.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio sp. AND4]
gi|159173623|gb|EDP58442.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio sp. AND4]
Length = 130
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 57/121 (47%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 8 RKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSVSLSSPIGFLEAADIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
D + L+ A+ +H+ GG+R+L+ D+ + + AK+ A+ + L+ I
Sbjct: 68 DSFFVKFILWGILSALAYHIAGGVRHLLMDLGHFEELESGAMSAKVTFGATAVLSLLAGI 127
Query: 125 I 125
+
Sbjct: 128 L 128
>gi|153835343|ref|ZP_01988010.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio harveyi
HY01]
gi|148868134|gb|EDL67293.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio harveyi
HY01]
Length = 130
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 57/121 (47%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 8 RKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSISLSSPMGFMEAADIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
D + L+ A+ +H+ GG+R+L+ D+ + + AK+ A+ + L+ I
Sbjct: 68 DSFFVKFILWGILTALAYHIAGGVRHLLMDLGHFEELESGAMSAKVAFGATAVLSLLAGI 127
Query: 125 I 125
+
Sbjct: 128 L 128
>gi|311280404|ref|YP_003942635.1| succinate dehydrogenase, cytochrome b556 subunit [Enterobacter
cloacae SCF1]
gi|308749599|gb|ADO49351.1| succinate dehydrogenase, cytochrome b556 subunit [Enterobacter
cloacae SCF1]
Length = 134
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ ++K RP++ L R T SI+HR++G + ++ ++++ +
Sbjct: 7 IKNVKKQRPVNLDLTTIRFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFLVA 66
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASILTV 119
M + ++ A+ +H + GIR+L+ D + + T+ AKI+ + +++
Sbjct: 67 TSIMSSFFVKFIVWGILTALAYHAVVGIRHLLMDFGYLEETLEAGTRSAKISFVITVVLS 126
Query: 120 LIVWII 125
L+ ++
Sbjct: 127 LLAGVL 132
>gi|268590352|ref|ZP_06124573.1| succinate dehydrogenase, cytochrome b556 subunit [Providencia
rettgeri DSM 1131]
gi|291314262|gb|EFE54715.1| succinate dehydrogenase, cytochrome b556 subunit [Providencia
rettgeri DSM 1131]
Length = 129
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 54/123 (43%), Gaps = 1/123 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ T SI+HR++G + + ++++ +
Sbjct: 5 VKKQRPVNLDLQTIHFPITAISSILHRVSGVITLIAVGILLWLLGTSLSSPEGFQYASEI 64
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMAKINIIASILTVLIV 122
M G + L+ A+ +H+ GGIR+++ D + AKI + +++ ++
Sbjct: 65 MTGFFAKFILWGILTALAYHICGGIRHMLMDFGCVDETLAAGNSSAKITFVITVILAILA 124
Query: 123 WII 125
++
Sbjct: 125 GVL 127
>gi|189209924|ref|XP_001941294.1| succinate dehydrogenase cytochrome b560 subunit [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187977387|gb|EDU44013.1| succinate dehydrogenase cytochrome b560 subunit [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 177
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 5/125 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSS 59
++ + NRP+SPHL IYR T S +RITG V+ + + + G H +
Sbjct: 47 LAKQRLNRPVSPHLAIYRPQITSIASAFNRITGVVLSGSLYLFGIAYLVAPYTGWHLETQ 106
Query: 60 LRCYMDGSVFEVCLFL----YTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ Y + H L G+R+L WDV + + + + +
Sbjct: 107 SMVATVAAWPAAVKAGIKAFYAFPFFFHSLNGLRHLAWDVGVGFKNQQVIRTGWSVVGLT 166
Query: 116 ILTVL 120
++ L
Sbjct: 167 VVMSL 171
>gi|328473399|gb|EGF44247.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio parahaemolyticus 10329]
Length = 130
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 57/121 (47%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 8 RKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSISLSSPMGFMEAADIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
DG + L+ A+ +H+ GGIR+L+ D+ + AK+ A+ + L+ I
Sbjct: 68 DGFFVKFILWGILTALAYHIAGGIRHLLMDLGHFEELDSGAMSAKVAFGATAVLSLLAGI 127
Query: 125 I 125
+
Sbjct: 128 L 128
>gi|170726186|ref|YP_001760212.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella woodyi
ATCC 51908]
gi|169811533|gb|ACA86117.1| succinate dehydrogenase, cytochrome b556 subunit [Shewanella woodyi
ATCC 51908]
Length = 124
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 54/121 (44%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP+ LQ R T SI+HR++G ++ ++++ + + ++
Sbjct: 1 MKKKRPVHLDLQTIRFPATAIASILHRVSGVIMLFAVGILIWLLNESLASPESFAGIQSL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
D + + ++ A+ +H++ G+R+L+ D + AK+ S +IV
Sbjct: 61 FDNLLVKFVIWGILTALGYHLIVGLRHLVMDTGRWEELASGIASAKVAFALSAAFSIIVG 120
Query: 124 I 124
I
Sbjct: 121 I 121
>gi|212712449|ref|ZP_03320577.1| hypothetical protein PROVALCAL_03543 [Providencia alcalifaciens DSM
30120]
gi|212684906|gb|EEB44434.1| hypothetical protein PROVALCAL_03543 [Providencia alcalifaciens DSM
30120]
Length = 129
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 1/123 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ T SI+HR++G + + ++++ +
Sbjct: 5 VKKQRPVNLDLQTIHFPITAISSILHRVSGVITLIAVGILLWLLGTSLSSPEGFQYASEI 64
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMAKINIIASILTVLIV 122
M G + L+ A+ +H+ GGIR+++ D + AKI + +++ ++
Sbjct: 65 MTGFFAKFILWGILTALAYHICGGIRHMLMDFGCVDETLAAGNSSAKITFVITVILAILA 124
Query: 123 WII 125
I+
Sbjct: 125 GIL 127
>gi|87199761|ref|YP_497018.1| succinate dehydrogenase subunit C [Novosphingobium aromaticivorans
DSM 12444]
gi|87135442|gb|ABD26184.1| succinate dehydrogenase subunit C [Novosphingobium aromaticivorans
DSM 12444]
Length = 141
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 12/140 (8%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGS-VVYLGTPVVVFWFFCIANGEHTLSS 59
M+ + RP+SPHLQI+R P M VSI+HRITG+ + + G ++++W +A+G + +
Sbjct: 1 MAQARKARPISPHLQIWRWGPAMLVSILHRITGNGLAFAGLGLLLWWVGALASGPESYQT 60
Query: 60 L-----------RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ + ++ L +WA H GIR+LI D+ + + +
Sbjct: 61 FLDWVWVGSAGGIQAVTAILGKIVLVGLSWAFFQHAASGIRHLILDIGAGYELDANARWS 120
Query: 109 KINIIASILTVLIVWIIKDI 128
+ I+ S+L + W +
Sbjct: 121 SLTIVISVLLTIAFWAFVLL 140
>gi|156973648|ref|YP_001444555.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio harveyi ATCC BAA-1116]
gi|156525242|gb|ABU70328.1| hypothetical protein VIBHAR_01351 [Vibrio harveyi ATCC BAA-1116]
Length = 130
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 57/121 (47%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 8 RKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSISLSSPMGFMEAADIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
D + L+ A+ +H+ GG+R+L+ D+ + + AK+ A+ + L+ I
Sbjct: 68 DSFFVKFILWGILTALAYHIAGGVRHLLMDLGHFEELESGAMSAKVAFGATAVLSLLAGI 127
Query: 125 I 125
+
Sbjct: 128 L 128
>gi|254455343|ref|ZP_05068772.1| succinate dehydrogenase, cytochrome b556 subunit [Candidatus
Pelagibacter sp. HTCC7211]
gi|207082345|gb|EDZ59771.1| succinate dehydrogenase, cytochrome b556 subunit [Candidatus
Pelagibacter sp. HTCC7211]
Length = 127
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 60/123 (48%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
++N PLSPH+QIYR + VSI HRITG + + ++ W + G+ + S++ +
Sbjct: 1 MENKSPLSPHIQIYRWHISSLVSISHRITGIINIIAITLICIWASMLILGDSSYSTINLF 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + + W+ +L IR+LI D+ + K I S+ ++++
Sbjct: 61 FNSLLGKFFAIGLAWSFSFQILSEIRHLIMDMGYGFELKTTRITGIAVIFGSVALTILIY 120
Query: 124 IIK 126
+I
Sbjct: 121 LIG 123
>gi|321251937|ref|XP_003192230.1| hypothetical protein CGB_B4140C [Cryptococcus gattii WM276]
gi|317458698|gb|ADV20443.1| Hypothetical Protein CGB_B4140C [Cryptococcus gattii WM276]
Length = 154
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 4/124 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSV----VYLGTPVVVFWFFCIANGEHT 56
++S + +RP SPHL IY+ T ++S +HRITG +YL + A
Sbjct: 25 LNSQRQHRPTSPHLAIYQPQLTWYLSSLHRITGVAVGGALYLSAMAYLLHPLVPAIDSAH 84
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
L L + G + F+ H G+R+L WD+ L K + + A++
Sbjct: 85 LIQLVHDLPGWLKGSAKFIIALPFTFHCFNGLRHLNWDIGKALTIKGVYRTGYAVLGATV 144
Query: 117 LTVL 120
L+ L
Sbjct: 145 LSSL 148
>gi|154293035|ref|XP_001547075.1| succinate dehydrogenase cytochrome b subunit [Botryotinia
fuckeliana B05.10]
gi|150845689|gb|EDN20882.1| succinate dehydrogenase cytochrome b subunit [Botryotinia
fuckeliana B05.10]
gi|254839123|gb|ACT83440.1| SdhC [Botryotinia fuckeliana]
gi|254839125|gb|ACT83441.1| SdhC [Botryotinia fuckeliana]
Length = 189
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 5/127 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ + RP++PHL IY+ +S ++RITG ++ G V + L +
Sbjct: 59 LVEQRKLRPVAPHLTIYQPQIPWIMSGLNRITGCILSGGFYVFGAAYLASPLFGWHLDTA 118
Query: 61 R--CYMDGSVFE---VCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ F +H G+R+L WD+ + + S
Sbjct: 119 SMVAAFGAWPLAAKFLAKFTLAMPFTYHSFNGLRHLAWDMGKTFKNATVVKTGWTVVGLS 178
Query: 116 ILTVLIV 122
+ + L +
Sbjct: 179 VGSALAL 185
>gi|261343509|ref|ZP_05971154.1| succinate dehydrogenase, cytochrome b556 subunit [Providencia
rustigianii DSM 4541]
gi|282568655|gb|EFB74190.1| succinate dehydrogenase, cytochrome b556 subunit [Providencia
rustigianii DSM 4541]
Length = 129
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 1/123 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ T SI+HR++G + + ++++ +
Sbjct: 5 VKKQRPVNLDLQTIHFPITAISSILHRVSGVITLIAVGILLWLLGTSLSSPEGFQYASEL 64
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMAKINIIASILTVLIV 122
M G + L+ A+ +H+ GGIR+++ D + AKI + +++ ++
Sbjct: 65 MTGFFAKFILWGILTALAYHICGGIRHMLMDFGCVDETLAAGNSSAKITFVITVILAILA 124
Query: 123 WII 125
I+
Sbjct: 125 GIL 127
>gi|296412597|ref|XP_002836009.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629809|emb|CAZ80166.1| unnamed protein product [Tuber melanosporum]
Length = 181
Score = 105 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 5/130 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ + + RP+SPHL IY+ T S +RITGS++ +G + S+
Sbjct: 52 LVAQRKQRPISPHLGIYQPQLTWCGSAANRITGSILSVGAYGFFAAYAVAPVFGWPFDSV 111
Query: 61 RCYMDGSVFEV-----CLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
S F T +H GIR+L+WD LD K + + + +
Sbjct: 112 TIAAAFSGLPAATKFGIKFAVTLPFSYHSWNGIRHLLWDTGKALDIKDVYRTGYVVLGLT 171
Query: 116 ILTVLIVWII 125
+++ + + ++
Sbjct: 172 VVSAICLAMV 181
>gi|195571827|ref|XP_002103902.1| GD20679 [Drosophila simulans]
gi|194199829|gb|EDX13405.1| GD20679 [Drosophila simulans]
Length = 152
Score = 105 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVF-WFFCIANGEHTLSSL 60
+ + R LSPHL IY+ T +SI HR TG + +G + + H ++ +
Sbjct: 27 KNERLGRELSPHLTIYQPQLTSMLSICHRGTGLALGVGVWGLGLGALISSHDISHYVTMV 86
Query: 61 RCY-MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G+ F+ + +H GIR+L+WD L K + S +
Sbjct: 87 EGLQLSGATLTALKFIIAYPAGYHTANGIRHLLWDTGRFLKIKEVYSTGYAMVATSFVLS 146
Query: 120 LIVWII 125
I+ ++
Sbjct: 147 AILALL 152
>gi|21064663|gb|AAM29561.1| RH04289p [Drosophila melanogaster]
Length = 171
Score = 105 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVF-WFFCIANGEHTLSSL 60
+ + R LSPHL IY+ T +SI HR TG + +G + + H ++ +
Sbjct: 46 KNERLGRELSPHLTIYQPQLTSMLSICHRGTGLALGVGVWGLGLGALISSHDISHYVTMV 105
Query: 61 RCY-MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G+ F+ + +H GIR+L+WD L K + S +
Sbjct: 106 EGLQLSGATLTALKFIIAYPAGYHTANGIRHLLWDTGRFLKIKEVYSTGYAMVATSFVLS 165
Query: 120 LIVWII 125
I+ ++
Sbjct: 166 AILALL 171
>gi|315048699|ref|XP_003173724.1| succinate dehydrogenase cytochrome B subunit [Arthroderma gypseum
CBS 118893]
gi|311341691|gb|EFR00894.1| succinate dehydrogenase cytochrome B subunit [Arthroderma gypseum
CBS 118893]
Length = 221
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 5/127 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
++ + NRP+SPHL IY+ T ++S ++RITG+++ + + L S
Sbjct: 92 LAKQRLNRPVSPHLTIYQPQITWYLSSLNRITGAMLSGSLYLFASAYLISPLLGWHLESA 151
Query: 61 RCYMDGSVFEV-----CLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ + F H G+R+L+WD+ L K + +
Sbjct: 152 SLAAAFAALPIAAKIGMKFTMALPFTFHCFNGVRHLVWDLGKQLTNKQVITTGWTVVGLT 211
Query: 116 ILTVLIV 122
+ + L +
Sbjct: 212 LSSALAL 218
>gi|331215943|ref|XP_003320651.1| hypothetical protein PGTG_02673 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309299641|gb|EFP76232.1| hypothetical protein PGTG_02673 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 189
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 4/129 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG----EHT 56
++ + RP SPH IY+ T + SI +R+TG + G + + T
Sbjct: 61 LNEQRKLRPSSPHFTIYQPQLTWYSSIANRVTGCALSAGFYAYALGYMALPGSIPLDSDT 120
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ + + +H G+R+L WD+ LD K + + +
Sbjct: 121 VVQVVASSPEWAKVAGKAIVALPFTYHTFNGVRHLAWDMGYLLDLKTSYTAGYTVLGLTA 180
Query: 117 LTVLIVWII 125
++ + + +I
Sbjct: 181 VSTVGLALI 189
>gi|299133110|ref|ZP_07026305.1| succinate dehydrogenase, cytochrome b556 subunit [Afipia sp. 1NLS2]
gi|298593247|gb|EFI53447.1| succinate dehydrogenase, cytochrome b556 subunit [Afipia sp. 1NLS2]
Length = 111
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 57/107 (53%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M +SI+HRITG +Y GT ++ +W A+G + L+ + + + +TW+++H
Sbjct: 1 MIMSIIHRITGLALYAGTLLLAWWLIATASGPAAYACLQSFTASWIGRLIEIGFTWSLLH 60
Query: 83 HMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDIV 129
H G+RYL+WD + ++ + +IA ++ +WI ++
Sbjct: 61 HAFSGLRYLVWDTGHGFGVEARERLTQAALIAGVVATAALWIGFYLI 107
>gi|262276218|ref|ZP_06054027.1| succinate dehydrogenase cytochrome b-556 subunit [Grimontia
hollisae CIP 101886]
gi|262220026|gb|EEY71342.1| succinate dehydrogenase cytochrome b-556 subunit [Grimontia
hollisae CIP 101886]
Length = 130
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 61/122 (50%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K +RP++ LQ R T SI HR++G + ++ ++++ + +
Sbjct: 7 VKKSRPVNLDLQTIRFPITAIASITHRVSGVITFISVAILLWLLSLSLSSPSGFEAASDI 66
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
++ + L+ A+ +H++GGIR+L+ D+ + + +Q AK+ I + + ++
Sbjct: 67 VNSFFAKFVLWGILTALAYHIVGGIRHLLMDMGHFEELESGSQSAKVGFIITAVLSVLAG 126
Query: 124 II 125
I+
Sbjct: 127 IL 128
>gi|45550736|ref|NP_650047.3| succinate dehydrogenase C [Drosophila melanogaster]
gi|195329931|ref|XP_002031662.1| GM26120 [Drosophila sechellia]
gi|17946639|gb|AAL49350.1| RH44771p [Drosophila melanogaster]
gi|45446453|gb|AAF54602.2| succinate dehydrogenase C [Drosophila melanogaster]
gi|194120605|gb|EDW42648.1| GM26120 [Drosophila sechellia]
Length = 171
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVF-WFFCIANGEHTLSSL 60
+ + R LSPHL IY+ T +SI HR TG + +G + + H ++ +
Sbjct: 46 KNERLGRELSPHLTIYQPQLTSMLSICHRGTGLALGVGVWGLGLGALISSHDISHYVTMV 105
Query: 61 RCY-MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G+ F+ + +H GIR+L+WD L K + S +
Sbjct: 106 EGLQLSGATLTALKFIIAYPAGYHTANGIRHLLWDTGRFLKIKEVYSTGYAMVATSFVLS 165
Query: 120 LIVWII 125
I+ ++
Sbjct: 166 AILALL 171
>gi|308050201|ref|YP_003913767.1| succinate dehydrogenase subunit C [Ferrimonas balearica DSM 9799]
gi|307632391|gb|ADN76693.1| succinate dehydrogenase subunit C [Ferrimonas balearica DSM 9799]
Length = 125
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RP+ LQ + T SI+HR++G ++++ V+++ +++
Sbjct: 1 MNKQRPVYLDLQQIQFPATAIASILHRVSGVILFVSIAVLLWLLATSLGSAQGFATVSEI 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCL-DKKIATQMAKINIIASILTVLIV 122
M+ + + ++ A+ +H GGIR+L+ D+ + A+ + +++ +I
Sbjct: 61 MNSLIAKFVVWGILTALAYHFCGGIRHLLMDMGHFEGSMESGNNSARAAMAITVILSVIA 120
Query: 123 WI 124
I
Sbjct: 121 GI 122
>gi|218710215|ref|YP_002417836.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio splendidus LGP32]
gi|218323234|emb|CAV19411.1| Succinate dehydrogenase cytochrome [Vibrio splendidus LGP32]
Length = 130
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 57/121 (47%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RP++ LQ T SI+HR++G + ++ ++++ + +
Sbjct: 8 RKTRPVNLDLQTIHFPITAIASILHRVSGVITFVAIGILLWLLSISLSSPVGFMEASDIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
DG + L+ A+ +H+ GGIR+L+ D+ + + + AK+ A+ + L+ I
Sbjct: 68 DGFFVKFILWGILTALAYHIAGGIRHLLMDLGHFEELESGAKSAKVAFAATAVLSLLAGI 127
Query: 125 I 125
+
Sbjct: 128 L 128
>gi|71908478|ref|YP_286065.1| succinate dehydrogenase subunit C [Dechloromonas aromatica RCB]
gi|71848099|gb|AAZ47595.1| succinate dehydrogenase subunit C [Dechloromonas aromatica RCB]
Length = 129
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 2/127 (1%)
Query: 1 MSSIK-NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
M+ + RP + L RL VSI+HR++G ++L P++++ F + S
Sbjct: 1 MAEMTIKKRPKNLDLTTIRLPLPGKVSILHRVSGVGLFLCLPLLLWLFGASLASPESFSG 60
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI-LT 118
++ + +V L WA +HH GIR+L+ D+ + ++K+ A + A + + S+ L+
Sbjct: 61 IKAIAGMFLVKVILAGLIWAFMHHFCAGIRFLLLDLHVGIEKEAARKSAGVVLAVSLPLS 120
Query: 119 VLIVWII 125
+++W +
Sbjct: 121 AILIWGV 127
>gi|260776543|ref|ZP_05885438.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio
coralliilyticus ATCC BAA-450]
gi|260607766|gb|EEX34031.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio
coralliilyticus ATCC BAA-450]
Length = 130
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 58/121 (47%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ T SI+HR++G + ++ ++++ + + +
Sbjct: 8 RKSRPVNLDLQTINFPITAIASILHRVSGVITFVAIGILLWLLSISLSSPVGYAQAVDIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
DG + L+ A+ +H+ GGIR+L+ D+ + + AK+ A+ + ++ I
Sbjct: 68 DGFFVKFILWGILTALAYHIAGGIRHLLMDLGHFEELESGAMSAKVAFAATAVLSVLAGI 127
Query: 125 I 125
+
Sbjct: 128 L 128
>gi|251790498|ref|YP_003005219.1| succinate dehydrogenase, cytochrome b556 subunit [Dickeya zeae
Ech1591]
gi|247539119|gb|ACT07740.1| succinate dehydrogenase, cytochrome b556 subunit [Dickeya zeae
Ech1591]
Length = 129
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ R T SI+HR++G + ++ ++++ + + +
Sbjct: 5 VKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSLSSQEGFAQAAAI 64
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASILTVLIV 122
M G + + ++ A+ +H++GG+R+L+ D + + ++ AKI+ I +++ L+
Sbjct: 65 MSGFIVKFIVWGILTALAYHIVGGLRHLLMDFGYIEENFEAGSRSAKISFIITVVLSLLA 124
Query: 123 WII 125
++
Sbjct: 125 GVL 127
>gi|302667796|ref|XP_003025478.1| hypothetical protein TRV_00347 [Trichophyton verrucosum HKI 0517]
gi|291189589|gb|EFE44867.1| hypothetical protein TRV_00347 [Trichophyton verrucosum HKI 0517]
Length = 191
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 5/118 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
++ + NRP+SPHL IYR T ++S ++RITG+++ G + + L S
Sbjct: 62 LAKQRLNRPVSPHLSIYRPQITWYLSSLNRITGAILSGGLYIFASAYLVSPLLGWHLESA 121
Query: 61 RCYMDGSVFE-----VCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINII 113
+ V F H G+R+L+WD+ L + +
Sbjct: 122 SLAAAFAALPIAAKVVMKFTMALPFTFHCFNGVRHLVWDLGKQLTNQQVITTGWTVVG 179
>gi|238898940|ref|YP_002924622.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|229466700|gb|ACQ68474.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 126
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
K RP++ L +R T SI+HRI+G +++ V+ +
Sbjct: 2 TKKQRPINLDLMTFRFPLTAIASILHRISGVIIFFAVGCFVWLLGLSLSSPEGFIKASTI 61
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASILTVLIV 122
+D + ++ L+ + A+ +H+LGGIR+L+ D + K+ + A++ ++ ++L ++V
Sbjct: 62 IDYFLIKLILWGFLTALFYHLLGGIRHLLMDFGCIEENLKLGIRSAQVVMVITVLLSILV 121
Query: 123 WII 125
II
Sbjct: 122 GII 124
>gi|170691023|ref|ZP_02882189.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
graminis C4D1M]
gi|170144272|gb|EDT12434.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
graminis C4D1M]
Length = 138
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 61/130 (46%), Gaps = 7/130 (5%)
Query: 2 SSIKNNRPLSPH------LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
++K RP + L YRL VSI+HR++G ++++ P +++ F E
Sbjct: 3 EAVKKPRPEFRNIGIGQILTAYRLPLAGRVSILHRLSGGLLFVALPFLLYLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIA 114
+ + ++ + ++ + WA + H G+R+L+ D + + K+ Q + + +
Sbjct: 63 SFEVFKGFLSNLIVKLITLVLAWAYLFHFCAGVRHLLMDTNHEAVTKEKGKQTSIVVFVV 122
Query: 115 SILTVLIVWI 124
S L ++ +
Sbjct: 123 SSLLTIVFAL 132
>gi|302381553|ref|YP_003817376.1| succinate dehydrogenase, cytochrome b556 subunit [Brevundimonas
subvibrioides ATCC 15264]
gi|302192181|gb|ADK99752.1| succinate dehydrogenase, cytochrome b556 subunit [Brevundimonas
subvibrioides ATCC 15264]
Length = 144
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 52/119 (43%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RPLSPHLQ +R TM SI+ R T + +G + V W +A G +S
Sbjct: 16 RPRPLSPHLQTWRWHITMTASILFRFTIGAISVGALIGVAWLAAVAFGPAAYASALGLAG 75
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ F T + +L G R+LI D L K A ++ I + + ++ +I
Sbjct: 76 SWFGLIVGFGLTVVLFSLLLNGGRHLINDTGRGLTIKSADLLSNIAVYGPVPLAVLFFI 134
>gi|283833993|ref|ZP_06353734.1| succinate dehydrogenase, cytochrome b556 subunit [Citrobacter
youngae ATCC 29220]
gi|291070127|gb|EFE08236.1| succinate dehydrogenase, cytochrome b556 subunit [Citrobacter
youngae ATCC 29220]
Length = 134
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 26/124 (20%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 9 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFLAASS 68
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASILTVLI 121
M+ E+ ++ A+ +H + GIR+L+ D + + T+ AKI + ++ L+
Sbjct: 69 IMNNFFVELIMWGILIALAYHAVMGIRHLLMDFGYIEETLEAGTRSAKICFVIIVVLSLL 128
Query: 122 VWII 125
++
Sbjct: 129 AGVL 132
>gi|126134539|ref|XP_001383794.1| succinate dehydrogenase [Scheffersomyces stipitis CBS 6054]
gi|126095943|gb|ABN65765.1| succinate dehydrogenase [Scheffersomyces stipitis CBS 6054]
Length = 160
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 5/120 (4%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS--- 59
+ + NRP+SPHL IY+ TM +S HRITG + + + + +
Sbjct: 33 AQRKNRPVSPHLTIYQPQLTMVLSSFHRITGVAMAGAFYALTCGYAATSILNIPFDASVL 92
Query: 60 --LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASIL 117
+ + +V L + H GIR+L+WD L + + + +
Sbjct: 93 VGVFASLPVAVKLSAKALMAYPFAFHFGNGIRHLVWDFGKELSIPGVYRTGYAVLAVTAV 152
>gi|291616724|ref|YP_003519466.1| SdhC [Pantoea ananatis LMG 20103]
gi|291151754|gb|ADD76338.1| SdhC [Pantoea ananatis LMG 20103]
gi|327393149|dbj|BAK10571.1| succinate dehydrogenase cytochrome b556 subunit SdhC [Pantoea
ananatis AJ13355]
Length = 140
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ L R T SI+HR++G + + ++++ +
Sbjct: 14 KTVKKQRPVNLDLSTIRFPVTAISSILHRVSGVITLVALGILLWLLGLSLSSPEGFQHAA 73
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIASILTVL 120
M+G + ++ A+ +H +GGIR+++ D + + A++ +++ +
Sbjct: 74 SVMNGFFAKFIMWGILTALAYHAVGGIRHMLMDFGYLAETLEAGKRSAQVTFGITVVLSI 133
Query: 121 IVWII 125
+ ++
Sbjct: 134 LAGVL 138
>gi|158562454|gb|ABW74134.1| succinate dehydrogenase cytochrome b560 subunit [Mucor racemosus]
Length = 180
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV----YLGTP-VVVFWFFCIANGEH 55
+ + RP+SPHLQIY+ T ++S +HR+TG + YLG V +
Sbjct: 51 LRQQRKLRPVSPHLQIYQPQITWYLSGLHRVTGVALGGAFYLGALAYVAAPALGVTIDTA 110
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
++ S ++ + H L G+R+L+WD + LD K I A+
Sbjct: 111 SIISAATAAPFALKFAAKTTVAAPFVFHCLNGVRHLVWDATKMLDIKSVYTSGYAVIGAT 170
Query: 116 ILTVL 120
+ L
Sbjct: 171 AVGTL 175
>gi|56416566|ref|YP_153640.1| succinate dehydrogenase cytochrome b556 subunit [Anaplasma
marginale str. St. Maries]
gi|222474934|ref|YP_002563349.1| succinate dehydrogenase cytochrome b556 subunit (sdhC) [Anaplasma
marginale str. Florida]
gi|56387798|gb|AAV86385.1| succinate dehydrogenase cytochrome b556 subunit [Anaplasma
marginale str. St. Maries]
gi|222419070|gb|ACM49093.1| succinate dehydrogenase cytochrome b556 subunit (sdhC) [Anaplasma
marginale str. Florida]
Length = 127
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC- 62
+ +RPLSPHLQ+Y+L +SI HR +G ++ G V+ + F + ++
Sbjct: 2 VLRSRPLSPHLQVYKLPVAALLSITHRASGLFLFFGLSVLSWLFVLLRCAPDCIAPFLAN 61
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA----SILT 118
+ + ++ F A +H G+R+L+WD + LDK T + ++ S++
Sbjct: 62 PLGFFLVKLLSFSCCVAFCYHYFNGVRHLLWDCGVGLDKTAVTASSAFVLLLTAAFSVVA 121
Query: 119 VLIVWI 124
VW+
Sbjct: 122 FFFVWL 127
>gi|295666820|ref|XP_002793960.1| succinate dehydrogenase cytochrome B subunit [Paracoccidioides
brasiliensis Pb01]
gi|226277613|gb|EEH33179.1| succinate dehydrogenase cytochrome B subunit [Paracoccidioides
brasiliensis Pb01]
Length = 188
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 5/130 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVV-FWFFCIANGEHTLSS 59
+ + NRP+SPHL IY+ T +S ++RITG + + F+ G H S
Sbjct: 58 LPRQRLNRPVSPHLSIYQPQVTWVLSSLNRITGLALAGSLYIFSSFYLVSPLLGWHLESP 117
Query: 60 LRCYMDGSVFEVCLFLY----TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ G++ + H L G R+LIWD+ K + + +
Sbjct: 118 VIAAAFGALPLAAKVGLKFTAALPFMFHALNGCRHLIWDLGKQFSNKQVIATGWMVVGLT 177
Query: 116 ILTVLIVWII 125
+ L +
Sbjct: 178 FSSALALACF 187
>gi|255949166|ref|XP_002565350.1| Pc22g14260 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592367|emb|CAP98714.1| Pc22g14260 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 187
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 5/130 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI-ANGEHTLSS 59
+ + NRP++PHL IY+ S +HRITG + + + A G H S+
Sbjct: 58 LVKQRLNRPVAPHLTIYKPQIGWIGSSLHRITGVALSGTLYIWATAYLASPALGWHLESA 117
Query: 60 LRCYMDGSVFEVCLFLY----TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
G++ L +H + GIR+L+WD+ L + + + S
Sbjct: 118 SMVAAMGALPLAAKVLLKTTLALPFTYHAMNGIRHLMWDLGRGLTNPVIIKTGWTVVGLS 177
Query: 116 ILTVLIVWII 125
I + + + +I
Sbjct: 178 IASAVGLALI 187
>gi|310814646|ref|YP_003962610.1| Succinate dehydrogenase cytochrome b-556 subunit
[Ketogulonicigenium vulgare Y25]
gi|308753381|gb|ADO41310.1| Succinate dehydrogenase cytochrome b-556 subunit
[Ketogulonicigenium vulgare Y25]
Length = 132
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 1 MSSI-KNNRPLSPHL--QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL 57
M+ + K RPLSP + + YR+ T S++ RI+G+ + G ++V+W +A G
Sbjct: 1 MADMQKGGRPLSPFMLGKYYRIQLTSASSLLTRISGNALIAGAVLLVWWLLGLAMGPDWF 60
Query: 58 SSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASIL 117
+ + + + + TWA+ +H+L G R+LI+D L + A ++ +I S +
Sbjct: 61 GPVHWVVTSWIGRLIIVGSTWALWYHLLAGARHLIFDQGYGLKIQTAERLGWAAVIGSFV 120
Query: 118 TVLIV 122
++
Sbjct: 121 LTVLT 125
>gi|56460613|ref|YP_155894.1| succinate dehydrogenase/fumarate reductase cytochrome b subunit
[Idiomarina loihiensis L2TR]
gi|56179623|gb|AAV82345.1| Succinate dehydrogenase/fumarate reductase cytochrome b subunit
[Idiomarina loihiensis L2TR]
Length = 124
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 55/121 (45%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ L +L SI+HRI+G + +++ F +G + +
Sbjct: 1 MKKERPVNLDLSTIKLPAAAKASILHRISGVAMLFSLAFLIWAFAVSLSGPEGFAQIESI 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
M + + + A+ H++ G+R+L+ D+ + A ++I S++ ++V
Sbjct: 61 MTSFIAKFIGWGILTALGFHLIIGLRHLVMDMGYWEELDSGRISAIVSIALSVIFSVLVG 120
Query: 124 I 124
+
Sbjct: 121 V 121
>gi|299066396|emb|CBJ37581.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Ralstonia solanacearum CMR15]
Length = 140
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+IK RP ++ + YRL VSI+HR +G++++L P V++ F E +
Sbjct: 7 EAIKKARPEFRNIGVGDIARYRLPWAGKVSILHRASGALMFLLLPFVLYLFEQSLTSEIS 66
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ + +V + WA +HH GIRYLI D+ + +DK +++ A +I S+
Sbjct: 67 FAKFTALLSNGFAKVVVLALIWAYLHHFCAGIRYLILDLHIGIDKTTSSKSAVSVLIVSL 126
Query: 117 LTVLIV 122
L ++
Sbjct: 127 LLTVVF 132
>gi|327300971|ref|XP_003235178.1| succinate dehydrogenase C subunit [Trichophyton rubrum CBS 118892]
gi|326462530|gb|EGD87983.1| succinate dehydrogenase C subunit [Trichophyton rubrum CBS 118892]
Length = 191
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 5/118 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
++ + NRP+SPHL IYR T ++S ++RITG+++ G + + L S
Sbjct: 62 LAKQRLNRPVSPHLSIYRPQITWYLSSLNRITGAILSGGLYIFASAYLVSPLLGWHLESA 121
Query: 61 RCYMDGSVFE-----VCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINII 113
+ F H G+R+L+WD+ L + +
Sbjct: 122 SLAAAFAALPIAAKVAMKFTMALPFTFHCFNGVRHLVWDLGKQLTNQQVITTGWTVVG 179
>gi|194902122|ref|XP_001980598.1| GG17240 [Drosophila erecta]
gi|190652301|gb|EDV49556.1| GG17240 [Drosophila erecta]
Length = 152
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVF-WFFCIANGEHTLSSL 60
+ + R LSPHL IY+ T +SI HR TG + +G + + H ++ +
Sbjct: 27 KNERLGRKLSPHLTIYQPQLTSMLSICHRGTGLALGVGVWGLGLGALISSHDISHYVTMV 86
Query: 61 RCY-MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G+ F+ + +H GIR+L+WD L K + S +
Sbjct: 87 EGLQLSGATLTALKFIIAYPAGYHTANGIRHLLWDTGRFLKIKEVYSTGYAMVATSFVLS 146
Query: 120 LIVWII 125
I+ ++
Sbjct: 147 AILALL 152
>gi|38048273|gb|AAR10039.1| similar to Drosophila melanogaster CG6666 [Drosophila yakuba]
Length = 152
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVF-WFFCIANGEHTLSSL 60
+ + R LSPHL IY+ T +SI HR TG + +G + + H ++ +
Sbjct: 27 KNERLGRKLSPHLTIYQPQLTSMLSICHRGTGLALGVGVWGLGLGALISSHDISHYVTMV 86
Query: 61 RCY-MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G+ F+ + +H GIR+L+WD L K + S +
Sbjct: 87 EGLQLSGATLTALKFIIAYPAGYHTANGIRHLLWDTGRFLKIKEVYSTGYAMVATSFVLS 146
Query: 120 LIVWII 125
I+ ++
Sbjct: 147 AILALL 152
>gi|309380089|emb|CBX21500.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 125
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RP+ L RL + ++HRI+G +++ P ++++ + E + R +
Sbjct: 4 KPRPVYLDLPSIRLPIPGDIFLLHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVS 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ ++ L WA +HH L GIR+L D L+ A AK+ A+++ +++ +
Sbjct: 64 HPLVKLVLIGVLWAYLHHSLAGIRFLFLDAHKGLELNTARNTAKLVFTAALVLTVVLGAL 123
>gi|255724056|ref|XP_002546957.1| succinate dehydrogenase cytochrome B subunit, mitochondrial
precursor [Candida tropicalis MYA-3404]
gi|240134848|gb|EER34402.1| succinate dehydrogenase cytochrome B subunit, mitochondrial
precursor [Candida tropicalis MYA-3404]
Length = 186
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 8/131 (6%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ + + NRP SPHLQIY+ T +S HRITG + + F + +
Sbjct: 55 LVAQRRNRPSSPHLQIYQPQLTWILSSFHRITGVAMAGAFYALTCTFAATSILGIHFDTA 114
Query: 61 RCY-----MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ ++ + + H+ GIR+L+WD L K + + A+
Sbjct: 115 TLVSAFTELPVTLQYAVKAACAYPFVFHVGNGIRHLVWDFGKELTIKGVYRTGYAVLAAT 174
Query: 116 ILT---VLIVW 123
+ + +W
Sbjct: 175 AVFGSYLAFIW 185
>gi|50308981|ref|XP_454496.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643631|emb|CAG99583.1| KLLA0E12123p [Kluyveromyces lactis]
Length = 181
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 8/131 (6%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI------ANGE 54
+ S + RP+SPHL IY+ T ++S VHR++G + L V F + E
Sbjct: 51 LVSQRKVRPVSPHLTIYQPQLTWYLSSVHRVSGVFLGLAFYAVTIAFGVSTVFGLGMSTE 110
Query: 55 HTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
+ + + + + + H GIR+LIWD L K + +
Sbjct: 111 NLVQFYNEKIPSWIDLTAKAGFAYLFAFHFGNGIRHLIWDTGKELTLKGVYRTGYAVLGL 170
Query: 115 SIL--TVLIVW 123
+ + + L+ W
Sbjct: 171 TAIMGSYLLTW 181
>gi|241950825|ref|XP_002418135.1| succinate dehydrogenase cytochrome b subunit, mitochondrial
precursor, putative [Candida dubliniensis CD36]
gi|223641474|emb|CAX43435.1| succinate dehydrogenase cytochrome b subunit, mitochondrial
precursor, putative [Candida dubliniensis CD36]
Length = 176
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ + + NRP SPHLQIY+ T +S HRITG + + F + +
Sbjct: 46 LVAQRKNRPTSPHLQIYQPQLTWIMSSFHRITGVAMAGAFYGLTCGFAATSILNIPFDTT 105
Query: 61 RCYMDGSVFEVC-----LFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ + + + + H+ GIR+LIWD L + + + +
Sbjct: 106 TLISYFTALPIFAQYGLKAICAYPFVFHIGNGIRHLIWDFGKELTIPGVYRTGYVVLAVT 165
Query: 116 ILT 118
+
Sbjct: 166 AVI 168
>gi|71019831|ref|XP_760146.1| hypothetical protein UM03999.1 [Ustilago maydis 521]
gi|46099776|gb|EAK85009.1| hypothetical protein UM03999.1 [Ustilago maydis 521]
Length = 193
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 53/125 (42%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
++ + RP SPH IY+ T +SI++RITG+ + + + A +L+
Sbjct: 69 LNQQRAQRPSSPHFTIYQPQITWLLSIINRITGTGLSVSYAGYPLFGSAEALSSASLTDF 128
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ A H L G+R+L WD L K A + + A+ L+ +
Sbjct: 129 VATLPAWFKTAVKAPLALAFSFHSLNGLRHLAWDWGFALTIKGVYSTAYVVLGATALSTI 188
Query: 121 IVWII 125
+ +I
Sbjct: 189 GLLLI 193
>gi|195499973|ref|XP_002097176.1| GE24640 [Drosophila yakuba]
gi|194183277|gb|EDW96888.1| GE24640 [Drosophila yakuba]
Length = 171
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVF-WFFCIANGEHTLSSL 60
+ + R LSPHL IY+ T +SI HR TG + +G + + H ++ +
Sbjct: 46 KNERLGRKLSPHLTIYQPQLTSMLSICHRGTGLALGVGVWGLGLGALISSHDISHYVTMV 105
Query: 61 RCY-MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ G+ F+ + +H GIR+L+WD L K + S +
Sbjct: 106 EGLQLSGATLTALKFIIAYPAGYHTANGIRHLLWDTGRFLKIKEVYSTGYAMVATSFVLS 165
Query: 120 LIVWII 125
I+ ++
Sbjct: 166 AILALL 171
>gi|296808871|ref|XP_002844774.1| succinate dehydrogenase cytochrome b560 subunit [Arthroderma otae
CBS 113480]
gi|238844257|gb|EEQ33919.1| succinate dehydrogenase cytochrome b560 subunit [Arthroderma otae
CBS 113480]
Length = 225
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 5/130 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
++ + NRP+SPHL IYR T ++S ++RITG+++ + + L S
Sbjct: 96 LAKQRLNRPVSPHLSIYRPQITWYLSSLNRITGAILSGSLYIFASAYLVSPLLGWHLESA 155
Query: 61 RCYMDGSVFE-----VCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ F H G+R+L+WD+ L + + +
Sbjct: 156 SLAAAFAALPIAAKVAMKFTMALPFTFHCYNGVRHLVWDMGKQLTNQQVITTGWTVVGLT 215
Query: 116 ILTVLIVWII 125
+ + L + +I
Sbjct: 216 LTSALALALI 225
>gi|226287137|gb|EEH42650.1| succinate dehydrogenase cytochrome b560 subunit [Paracoccidioides
brasiliensis Pb18]
Length = 188
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 5/130 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSS 59
+ + NRP+SPHL IY+ T +S ++RITG + + F+ G H S
Sbjct: 58 LPRQRLNRPVSPHLSIYQPQVTWVLSSLNRITGVALAGSLYIFSSFYLVSPLLGWHLESH 117
Query: 60 LRCYMDGSVFEVCLFLYTW----AVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ G++ + + H L G R+LIWD+ K + +
Sbjct: 118 MIAAAFGALPLAAKVGLKFTAAVPFMFHALNGCRHLIWDLGKQFSNKQVIAGGWTVVGLT 177
Query: 116 ILTVLIVWII 125
+ + L +
Sbjct: 178 LSSALALACF 187
>gi|48727574|gb|AAT46090.1| integral membrane protein CII-3 [Branchiostoma belcheri
tsingtauense]
Length = 165
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV-----YLGTPVVVFWFFCIANGEHT 56
+ + RP+SPHL IY+ T +S+ HR TG+ + ++V +
Sbjct: 51 KNAQKKRPMSPHLTIYKPQLTAMLSMTHRGTGAAMAGCVYAFSMGMLVVNPLLGWDFPTI 110
Query: 57 LSSLRCY-MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKI 110
+S ++ + + + W + +H + GIR+L WD D K+
Sbjct: 111 ISFVKSLELHPWLILGGKWCMAWPISYHAMNGIRHLTWDTGYGFDMKVLYSSGWF 165
>gi|19075212|ref|NP_587712.1| succinate dehydrogenase (ubiquinone) cytochrome b subunit
[Schizosaccharomyces pombe 972h-]
gi|74582587|sp|O74882|SDH3_SCHPO RecName: Full=Succinate dehydrogenase cytochrome B subunit,
mitochondrial; Flags: Precursor
gi|3646453|emb|CAA20917.1| succinate dehydrogenase (ubiquinone) cytochrome b subunit
[Schizosaccharomyces pombe]
Length = 180
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVY-----LGTPVVVFWFFCIANGEH 55
++S + +RP SPHL IY T ++S +HRITG VV +V +
Sbjct: 51 LASQRVHRPNSPHLTIYEPQLTWYLSSLHRITGCVVAGTLYAFAMGYLVAPLAGYSLDTA 110
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
T+S L + + F+ ++ + H+ GIR+LIWD + L K + + S
Sbjct: 111 TISGLIQQVPTWIKVPAKFVISYPLTFHIFNGIRHLIWDTTKELSLKGVYRTGYAVLALS 170
Query: 116 ILT 118
+LT
Sbjct: 171 VLT 173
>gi|253990452|ref|YP_003041808.1| succinate dehydrogenase cytochrome b-556 subunit [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|211638981|emb|CAR67596.1| succinate dehydrogenase cytochrome b-556 subunit [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253781902|emb|CAQ85066.1| succinate dehydrogenase cytochrome b-556 subunit [Photorhabdus
asymbiotica]
Length = 129
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ + SI+HR++G + ++ ++++ + +
Sbjct: 5 VKKQRPVNLDLQTIHFPVSAVASILHRVSGVITFIAVGILLWLLGMSLSSQEGFQQAADI 64
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASILTVLIV 122
M + ++ A+ +H+ GGIR+L+ D + + + AK+ I+ +++ ++
Sbjct: 65 MTSFFAKFIVWGILTALAYHICGGIRHLLMDFGYLEENLAVGSASAKVAIVLAVILSILA 124
Query: 123 WII 125
++
Sbjct: 125 GVL 127
>gi|170691142|ref|ZP_02882308.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
graminis C4D1M]
gi|170144391|gb|EDT12553.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
graminis C4D1M]
Length = 138
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 3 SIKNNRPLSPH------LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
++K RP + L YRL VSI+HR++G ++++ P +++ F E +
Sbjct: 4 TLKKPRPEFRNIGIGQILTAYRLPLAGRVSILHRLSGGLLFVALPFLLYLFDQSLTSELS 63
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIAS 115
+ ++ + ++ + WA + H G+R+L+ D + + K+ Q + + + S
Sbjct: 64 FEVFKGFLSNIIVKLITLVLAWAYLFHFCAGVRHLLMDTNHEAVTKEKGKQTSIVVFVVS 123
Query: 116 ILTVLIVWI 124
L ++ +
Sbjct: 124 SLLTIVFAL 132
>gi|300715874|ref|YP_003740677.1| succinate dehydrogenase cytochrome b-556 subunit [Erwinia
billingiae Eb661]
gi|299061710|emb|CAX58826.1| Succinate dehydrogenase cytochrome b-556 subunit [Erwinia
billingiae Eb661]
Length = 129
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ L R T SI+HR++G + ++ ++++ +
Sbjct: 3 KTVKKQRPVNLDLSTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSLSSPEGFLQAS 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIASILTVL 120
M + ++ A+ +H++GGIR+++ D +I T+ A+I+ +++ +
Sbjct: 63 AVMGSFFVKFIMWGILTALAYHIVGGIRHMLMDFGYLGETLQIGTRSAQISFGITVVLSI 122
Query: 121 IVWII 125
+ ++
Sbjct: 123 LAGVL 127
>gi|88607062|ref|YP_505561.1| succinate dehydrogenase, cytochrome b556 subunit [Anaplasma
phagocytophilum HZ]
gi|46361034|gb|AAL17653.2| succinate dehydrogenase subunit C [Anaplasma phagocytophilum]
gi|88598125|gb|ABD43595.1| succinate dehydrogenase, cytochrome b556 subunit [Anaplasma
phagocytophilum HZ]
Length = 127
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI-ANGEHTLSSLRC 62
+ +RPLSPHL +Y+L T ++SI HRITG ++ +G + + + L
Sbjct: 1 MSRSRPLSPHLSVYKLPITAWLSITHRITGVLLLMGLTLFTWLLISLHWTSGQLWGLLDS 60
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
++ + +V + A+ +H GIR+L WD + K AT + + ++ +++ +
Sbjct: 61 WIGVLLVKVIIGGCIAALCYHYYNGIRHLFWDCGIGFGKSEATFSGWLMLGFAVTSLIGL 120
Query: 123 WIIKDI 128
I
Sbjct: 121 GFIGFF 126
>gi|304395703|ref|ZP_07377586.1| succinate dehydrogenase, cytochrome b556 subunit [Pantoea sp. aB]
gi|304356997|gb|EFM21361.1| succinate dehydrogenase, cytochrome b556 subunit [Pantoea sp. aB]
Length = 146
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 55/125 (44%), Gaps = 1/125 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ L R T SI+HR++G + + ++++ +
Sbjct: 20 KTVKKQRPVNLDLSTIRFPVTAITSILHRVSGVITLVAIGILLWLLGLSLSSPEGFQHAA 79
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIASILTVL 120
MDG + ++ A+ +H + GIR+++ D + + A + + +++ +
Sbjct: 80 SIMDGFFAKFIMWGILTALAYHAVSGIRHMLMDFGYLAETLESGKRSAHMTFVITVVLAI 139
Query: 121 IVWII 125
+ ++
Sbjct: 140 LAGVL 144
>gi|126668307|ref|ZP_01739266.1| succinate dehydrogenase (C subunit) [Marinobacter sp. ELB17]
gi|126627224|gb|EAZ97862.1| succinate dehydrogenase (C subunit) [Marinobacter sp. ELB17]
Length = 126
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 63/121 (52%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ + RP++ L + VSI+HR++G +++ G +++ +GE +
Sbjct: 1 MNSKRPVNLDLGKFHFPLPAIVSILHRVSGIIIFAGVAFMLYGLDLSLSGEEGYGHVSEL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ G ++ ++ A+++H++ GIR+L+ D+ + + + AK+ + +I+ +++
Sbjct: 61 LSGFFAKLIIWGILSALLYHLVAGIRHLLLDMGIGEELESGLVAAKVTLAIAIILIVLAG 120
Query: 124 I 124
+
Sbjct: 121 V 121
>gi|54308237|ref|YP_129257.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Photobacterium profundum SS9]
gi|46912665|emb|CAG19455.1| putative succinate dehydrogenase; fumaratereductase, cytochrome b
subunit [Photobacterium profundum SS9]
Length = 126
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 53/118 (44%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ R SI+HR++G + ++ ++++ + +S
Sbjct: 3 VKKPRPVNLDLQTIRFPLPAIASILHRVSGVITFVSVAILLWLLSISLSSPEGFASAASI 62
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
D + L+ A+ +H++ G+R+L+ D+ + + K++ + + +
Sbjct: 63 ADSFFVKFILWGVLTALFYHIVVGVRHLLMDMGYFEEMETGIASTKVSFVIVAVLSVF 120
>gi|52840772|ref|YP_094571.1| succinate dehydrogenase cytochrome b556 subunit C [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|52627883|gb|AAU26624.1| succinate dehydrogenase cytochrome b556 subunit C [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
Length = 130
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 60/121 (49%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RP++ L + P SI+HRI+G +++L P V+F C E + +
Sbjct: 7 VNKKRPINLDLSSLKFPPMAIASILHRISGVLIFLLFPFVLFILGCSLQSEESFVQAKTM 66
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ +++ L+ + ++I+H++ GIR+LI D+ + A I+ +++ + +
Sbjct: 67 LANPFYKLMLWAFGASMIYHVIAGIRHLIMDMGFGESLRAGRMSAVSIIVLAVILAIFLG 126
Query: 124 I 124
I
Sbjct: 127 I 127
>gi|86147665|ref|ZP_01065974.1| Succinate dehydrogenase [Vibrio sp. MED222]
gi|85834576|gb|EAQ52725.1| Succinate dehydrogenase [Vibrio sp. MED222]
Length = 126
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 57/121 (47%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RP++ LQ T SI+HR++G + ++ ++++ + +
Sbjct: 4 RKTRPVNLDLQTIHFPITAIASILHRVSGVITFVAIGILLWLLSISLSSPVGFMEASDIV 63
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
DG + L+ A+ +H+ GGIR+L+ D+ + + + AK+ A+ + L+ I
Sbjct: 64 DGFFVKFILWGILTALAYHIAGGIRHLLMDLGHFEELESGAKSAKVAFAATAVLSLLAGI 123
Query: 125 I 125
+
Sbjct: 124 L 124
>gi|83748081|ref|ZP_00945110.1| Hypothetical Protein RRSL_02488 [Ralstonia solanacearum UW551]
gi|207723905|ref|YP_002254303.1| transmembrane succinate dehydrogenase (cytochrome b-556 subunit)
protein [Ralstonia solanacearum MolK2]
gi|207742801|ref|YP_002259193.1| transmembrane succinate dehydrogenase (cytochrome b-556 subunit)
protein [Ralstonia solanacearum IPO1609]
gi|83725267|gb|EAP72416.1| Hypothetical Protein RRSL_02488 [Ralstonia solanacearum UW551]
gi|206589111|emb|CAQ36073.1| transmembrane succinate dehydrogenase (cytochrome b-556 subunit)
protein [Ralstonia solanacearum MolK2]
gi|206594195|emb|CAQ61122.1| transmembrane succinate dehydrogenase (cytochrome b-556 subunit)
protein [Ralstonia solanacearum IPO1609]
Length = 136
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+IK RP ++ + YRL VSI+HR +G++++L P V++ F E +
Sbjct: 3 EAIKKARPEFRNIGVGDIARYRLPWAGKVSILHRASGALMFLLLPFVLYLFEQSLTSEIS 62
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ + +V + WA +HH GIRYLI D+ + +DK + + A +IAS+
Sbjct: 63 FAKFTALLSNGFAKVVVLALIWAYLHHFCAGIRYLILDLHIGIDKTTSAKSAVSVLIASL 122
Query: 117 LTVLIV 122
L ++
Sbjct: 123 LLTVVF 128
>gi|326468741|gb|EGD92750.1| succinate dehydrogenase C subunit [Trichophyton tonsurans CBS
112818]
gi|326481350|gb|EGE05360.1| succinate dehydrogenase cytochrome b560 subunit [Trichophyton
equinum CBS 127.97]
Length = 191
Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 5/118 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
++ + NRP+SPHL IYR T ++S ++RITG+++ G + + L S
Sbjct: 62 LAKQRLNRPISPHLSIYRPQITWYLSSLNRITGAILSGGLYIFASAYLVSPLLGWHLESA 121
Query: 61 RCYMDGSVFEV-----CLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINII 113
+ + F H G+R+L+WD+ L + +
Sbjct: 122 SLAAAFAALPIAAKVGMKFTMALPFTFHCFNGVRHLVWDLGKQLTNQQVITTGWTVVG 179
>gi|295687606|ref|YP_003591299.1| succinate dehydrogenase cytochrome b556 subunit [Caulobacter segnis
ATCC 21756]
gi|295429509|gb|ADG08681.1| succinate dehydrogenase, cytochrome b556 subunit [Caulobacter
segnis ATCC 21756]
Length = 135
Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 55/121 (45%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RP+SPHLQ++R TM SI+HR +++G ++ W +A G + +
Sbjct: 10 ERPMSPHLQVWRWHITMACSILHRACVVGLWVGAVILAGWAAALAAGPDAYAGYTAVLGS 69
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
+ ++ L T+AV ++ IR WD + A + I ++ ++ W+I
Sbjct: 70 PIGKLVLLGETFAVFFNVAYTIRQTFWDAGKGFQPRTADMTGAMAIAFAVAATIVTWVIA 129
Query: 127 D 127
Sbjct: 130 G 130
>gi|30249045|ref|NP_841115.1| succinate dehydrogenase, cytochrome b subunit [Nitrosomonas
europaea ATCC 19718]
gi|30138662|emb|CAD84957.1| Succinate dehydrogenase, cytochrome b subunit [Nitrosomonas
europaea ATCC 19718]
Length = 130
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYL-GTPVVVFWFFCIANGEHTLSSLRCYM 64
RP +L R VSI+HRI+G +++L G P+ ++ + T +SL+ +
Sbjct: 8 KRRPKYLNLLKIRQPLPAIVSILHRISGVLLFLPGIPLFLYGLQMLLQSPETFASLQSNL 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ ++ L L TW IHH+L GIR+L+ D+ + + A +K+ ++ + + I
Sbjct: 68 AHPLCKLFLLLATWFFIHHLLAGIRHLMLDLHYGMQLEQARLSSKLVLVFGAILTALTGI 127
>gi|322794003|gb|EFZ17241.1| hypothetical protein SINV_07470 [Solenopsis invicta]
Length = 148
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVY-LGTPVVVFWFFCIANGEHTLSSL 60
+++ RPLSPHL IY++ T +SI HR TG ++ + + F + ++
Sbjct: 23 KNMRLKRPLSPHLSIYQVQLTTVLSITHRTTGIMLASYAMFLGLGTLFIPGGIPCFIETV 82
Query: 61 -RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ V L +H+ GIR+L WD+ + L K + ++++
Sbjct: 83 DNLCLPLPVLFAGKTLLALPATYHLFNGIRHLAWDLGMFLSIKDVYSTGYVVSALAVISG 142
Query: 120 LIVWII 125
L + +
Sbjct: 143 LALAAM 148
>gi|17546715|ref|NP_520117.1| transmembrane succinate dehydrogenase (cytochrome B-556 subunit)
oxidoreductase [Ralstonia solanacearum GMI1000]
gi|17429014|emb|CAD15698.1| putative transmembrane succinate dehydrogenase (cytochrome b-556
subunit) oxidoreductase protein [Ralstonia solanacearum
GMI1000]
Length = 140
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+IK RP ++ + YRL VSI+HR +G++++L P V++ F E +
Sbjct: 7 EAIKKARPEFRNIGLGDIARYRLPWAGKVSILHRASGALMFLLLPFVLYLFEQSLTSEIS 66
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ + +V + WA +HH GIRYLI D+ + +DK +++ A +I S+
Sbjct: 67 FAKFTALLSNGFAKVVVLALIWAYLHHFCAGIRYLILDLHIGIDKTTSSKSAVSVLIVSL 126
Query: 117 LTVLIV 122
L ++
Sbjct: 127 LLTVVF 132
>gi|241663421|ref|YP_002981781.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia
pickettii 12D]
gi|309781916|ref|ZP_07676649.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia sp.
5_7_47FAA]
gi|240865448|gb|ACS63109.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia
pickettii 12D]
gi|308919557|gb|EFP65221.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia sp.
5_7_47FAA]
Length = 136
Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+IK RP+ ++ + YRL VSI+HR +G++++L P V++ F E +
Sbjct: 3 EAIKKARPVYRNIGLGDIARYRLPWAGKVSILHRASGALMFLLLPFVLYLFEQSLTSEIS 62
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ + +V + WA +HH GIRYLI D+ + +DK A++ A +I S+
Sbjct: 63 FAKFTALLSNGFAKVVVLALIWAYLHHFCAGIRYLILDLHIGIDKTSASKSAVSVLIVSL 122
Query: 117 LTVLIV 122
L ++
Sbjct: 123 LLTVVF 128
>gi|307130093|ref|YP_003882109.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Dickeya dadantii 3937]
gi|306527622|gb|ADM97552.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Dickeya dadantii 3937]
Length = 129
Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
S+K RP++ LQ + T SI+HR++G + ++ ++++ + + +
Sbjct: 3 KSVKKQRPVNLDLQTIQFPVTAIASILHRVSGVITFVAVGILLWLLGLSLSSQEGFAQAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-----KIATQMAKINIIASI 116
MD + + ++ A+ +H++GG+R+L+ D + + A I ++ S
Sbjct: 63 AIMDSFIVKFIVWGILTALAYHIVGGLRHLLMDFGYIEENFAAGSRSAKLSFIITVVLSF 122
Query: 117 LTVLIVW 123
L ++VW
Sbjct: 123 LAGVLVW 129
>gi|319779731|ref|YP_004130644.1| Succinate dehydrogenase cytochrome b-556 subunit [Taylorella
equigenitalis MCE9]
gi|317109755|gb|ADU92501.1| Succinate dehydrogenase cytochrome b-556 subunit [Taylorella
equigenitalis MCE9]
Length = 137
Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 58/108 (53%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
Y+L +SI+HR++G +++L P+++ F +G +SL G + V +
Sbjct: 24 YKLPLPAILSILHRVSGVLIFLSLPILIHLFRNSLSGPVMFNSLATGFSGFIIRVVCIVA 83
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
W +HH+ GIR+LI D+ + +DK A + AKI I S++ + I
Sbjct: 84 LWGFMHHLCAGIRFLILDLHIGMDKVSARKSAKIVFIVSLVLTFVFAI 131
>gi|94499006|ref|ZP_01305544.1| succinate dehydrogenase, cytochrome b556 subunit [Oceanobacter sp.
RED65]
gi|94428638|gb|EAT13610.1| succinate dehydrogenase, cytochrome b556 subunit [Oceanobacter sp.
RED65]
Length = 125
Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RP + L SI HRI G ++++G ++ + +
Sbjct: 1 MNQQRPKNLDLSTISFPLPALTSITHRIAGVILFVGVIFLLCVLSDSLQSAQGFAQAKQS 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
M + A+ +H + GI++L+ D + K+ A I I+ + L +++
Sbjct: 61 MTTGFGSFITWGLLSALAYHFVAGIKHLVMDFGIGETKEGGKLGAIITIVLAALLIVLAG 120
Query: 122 VWI 124
VW+
Sbjct: 121 VWV 123
>gi|329891125|ref|ZP_08269468.1| succinate dehydrogenase, cytochrome b556 subunit [Brevundimonas
diminuta ATCC 11568]
gi|328846426|gb|EGF95990.1| succinate dehydrogenase, cytochrome b556 subunit [Brevundimonas
diminuta ATCC 11568]
Length = 125
Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 56/116 (48%)
Query: 10 LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVF 69
+SP I+R TM SI+ R+T +G +++ W +A+G +S+ +
Sbjct: 1 MSPFTDIWRWHMTMVASILFRVTIGAASVGAVLLLGWVAAVASGPDAFASVAAFSGSPFG 60
Query: 70 EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
F TW + +L G R+LI D LD K A MA+I + I+ ++ W++
Sbjct: 61 LFIWFGLTWVLFSFLLNGARHLINDAGKGLDLKSANLMAQIAVWGPIVLAVLFWVV 116
>gi|90580050|ref|ZP_01235858.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio angustum S14]
gi|90438935|gb|EAS64118.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio angustum S14]
Length = 133
Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 52/118 (44%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ R T SI+HR++G + ++ ++++ + +S
Sbjct: 10 VKKPRPVNLDLQTIRFPLTAIASILHRVSGVITFVSIAILLWLLNLSLSSPEGFTSAASI 69
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
D + L+ A+ +H++ GIR+L+ D+ + KI+ + +
Sbjct: 70 TDSFFVKFILWGVLTALFYHIVLGIRHLLMDLGYFEEMDTGIASTKISFAIVAVLAVF 127
>gi|89073516|ref|ZP_01160039.1| putative succinate dehydrogenase; fumaratereductase, cytochrome
bsubunit [Photobacterium sp. SKA34]
gi|89050780|gb|EAR56261.1| putative succinate dehydrogenase; fumaratereductase, cytochrome
bsubunit [Photobacterium sp. SKA34]
Length = 133
Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 52/118 (44%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ R T SI+HR++G + ++ ++++ + +S
Sbjct: 10 VKKPRPVNLDLQTIRFPLTAIASILHRVSGVITFVSLAILLWLLNLSLSSPEGFTSAASV 69
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
D + L+ A+ +H++ GIR+L+ D+ + KI+ + +
Sbjct: 70 TDSFFVKFILWGVLTALFYHIVLGIRHLLMDLGYFEEMDTGIASTKISFAIVAVLAVF 127
>gi|320582704|gb|EFW96921.1| succinate dehydrogenase cytochrome b subunit, mitochondrial
precursor, putative [Pichia angusta DL-1]
Length = 170
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV--VFWFFCIANGEHTLS 58
+ + + NRP SPHLQIY+ T +S HRITG + G V + F +A +
Sbjct: 41 LVAQRKNRPSSPHLQIYQPQLTWILSSFHRITGVGLAAGFYAVTCTYAFTSLAGIPFDTA 100
Query: 59 SLRCYMDGSVFEV---CLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+L + G ++ H+ G+R+L+WD L K + + + +
Sbjct: 101 TLVSVVAGLPVAAKVGLKAAASFPFAFHVANGVRHLVWDFGKELTLKGVYRTGYVVLGFT 160
Query: 116 ILT 118
L
Sbjct: 161 ALV 163
>gi|28897617|ref|NP_797222.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio parahaemolyticus RIMD 2210633]
gi|260878228|ref|ZP_05890583.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio
parahaemolyticus AN-5034]
gi|260895665|ref|ZP_05904161.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio
parahaemolyticus Peru-466]
gi|260901293|ref|ZP_05909688.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio
parahaemolyticus AQ4037]
gi|28805829|dbj|BAC59106.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio
parahaemolyticus RIMD 2210633]
gi|308088169|gb|EFO37864.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio
parahaemolyticus Peru-466]
gi|308090145|gb|EFO39840.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio
parahaemolyticus AN-5034]
gi|308109821|gb|EFO47361.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio
parahaemolyticus AQ4037]
Length = 130
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 57/121 (47%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 8 RKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSISLSSHMGFMEAADIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
DG + L+ A+ +H+ GGIR+L+ D+ + AK+ A+ + L+ I
Sbjct: 68 DGFFVKFILWGILTALAYHIAGGIRHLLMDLGHFEELDSGAMSAKVAFGATAVLSLLAGI 127
Query: 125 I 125
+
Sbjct: 128 L 128
>gi|302505419|ref|XP_003014416.1| hypothetical protein ARB_06978 [Arthroderma benhamiae CBS 112371]
gi|291178237|gb|EFE34027.1| hypothetical protein ARB_06978 [Arthroderma benhamiae CBS 112371]
Length = 197
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 5/118 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
++ + NRP+SPHL IYR T ++S ++RITG+++ G + + L S
Sbjct: 68 LAKQRLNRPVSPHLSIYRPQITWYLSSLNRITGAILSGGLYIFASAYLVSPLLGWHLESA 127
Query: 61 RCYMDGSVFE-----VCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINII 113
+ F H G+R+L+WD+ L + +
Sbjct: 128 SLAAAFAALPIAAKVAMKFTMALPFTFHCFNGVRHLVWDLGKQLTNQQVITTGWTVVG 185
>gi|156063090|ref|XP_001597467.1| hypothetical protein SS1G_01661 [Sclerotinia sclerotiorum 1980]
gi|154696997|gb|EDN96735.1| hypothetical protein SS1G_01661 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 189
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 5/127 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ + RP SPHL IY+ +S + RITG V+ G V + L +
Sbjct: 59 LVEQRKLRPTSPHLTIYQPQIPWIMSGLFRITGCVLSGGFYVFGAAYLVSPLFGWHLDTA 118
Query: 61 R--CYMDGSVFE---VCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ F +H G+R+ WD+ + I S
Sbjct: 119 SMVAAFGAWPLAAKVLAKFSVALPFTYHSFNGLRHFSWDMGKTFKNATVVKTGWAVIGLS 178
Query: 116 ILTVLIV 122
+ + L +
Sbjct: 179 VSSALAL 185
>gi|217039529|gb|ACJ76893.1| mitochondrial succinate dehydrogenase cytochrome b560 subunit C
[Alternaria alternata]
Length = 177
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 5/125 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSS 59
++ + NRP+SPHL IY+ T + S ++RITG + + + + G H +
Sbjct: 47 LAKQRVNRPVSPHLAIYKPQITWYASSLNRITGITLSGSLYLFGIAYLIAPYTGWHLETQ 106
Query: 60 LRCYMDGSVFEVCLFL----YTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ Y + H G+R+L WDV + + + + +
Sbjct: 107 SMVATVAAWPAAVKAGLKAFYAFPFFFHSFNGLRHLAWDVGIGFKNQQVIRTGWTAVGLT 166
Query: 116 ILTVL 120
+ L
Sbjct: 167 VAFSL 171
>gi|308186067|ref|YP_003930198.1| succinate dehydrogenase cytochrome b-556 subunit [Pantoea vagans
C9-1]
gi|308056577|gb|ADO08749.1| succinate dehydrogenase cytochrome b-556 subunit [Pantoea vagans
C9-1]
Length = 146
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ L R T SI+HR++G + + ++++ +
Sbjct: 20 KTVKKQRPVNLDLSTIRFPVTAISSILHRVSGVITLVAIGILLWLLGLSLSSPEGFQHAA 79
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIASILTVL 120
MDG + ++ A+ +H + GIR+++ D ++ + A + + +++ +
Sbjct: 80 SIMDGFFAKFIMWGILTALAYHAVSGIRHMLMDFGYLAETLEVGKRSAHMTFVITVVLAI 139
Query: 121 IVWII 125
+ ++
Sbjct: 140 LAGVL 144
>gi|302675006|ref|XP_003027187.1| hypothetical protein SCHCODRAFT_86145 [Schizophyllum commune H4-8]
gi|300100873|gb|EFI92284.1| hypothetical protein SCHCODRAFT_86145 [Schizophyllum commune H4-8]
Length = 175
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 53/124 (42%), Gaps = 2/124 (1%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT-PVVVFWFFCIANGEHT-LS 58
++ + RP SPH+ IY+ T + SI +RITG + + + + F + +
Sbjct: 49 LNEQRLRRPNSPHMTIYQPQLTWYSSIANRITGVGLSVLLYGFSLGYLFLPGTFDSAHVV 108
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
+ +V + +H G+R+L WD+ L K + + + A+ ++
Sbjct: 109 DFVAGLPDAVKYAGKTILALPFAYHGWNGVRHLGWDMGKFLTLKNSYRAGYAVLAATGVS 168
Query: 119 VLIV 122
+ +
Sbjct: 169 TIAL 172
>gi|300703704|ref|YP_003745306.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
sdhd [Ralstonia solanacearum CFBP2957]
gi|299071367|emb|CBJ42686.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Ralstonia solanacearum CFBP2957]
Length = 136
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+IK RP ++ + YRL VSI+HR++G++++L P V++ F E +
Sbjct: 3 EAIKKARPEFRNIGVGDIARYRLPWAGKVSILHRVSGALMFLLLPFVLYLFEQSLTSEIS 62
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ + +V + WA +HH G+RYLI D+ + +DK + + A +I S+
Sbjct: 63 FAKFTALLSSGFAKVVVLALIWAYLHHFCAGVRYLILDLHIGIDKTTSAKSAVSVLIVSL 122
Query: 117 LTVLIV 122
L ++
Sbjct: 123 LLTVVF 128
>gi|258626217|ref|ZP_05721065.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio mimicus
VM603]
gi|258581572|gb|EEW06473.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio mimicus
VM603]
Length = 130
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 57/121 (47%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ + SI+HR++G + ++ ++++ + +
Sbjct: 8 RKSRPVNLDLQTIHFPISAIASILHRVSGVITFVAVGILLWLLSLSLSSPVGFMEASNIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
D + + L+ A+ +H+ GGIR+L+ D+ + + AK+ A+ + L+ +
Sbjct: 68 DSFLVKFVLWGILTALAYHIAGGIRHLLMDLGHFEELESGATSAKVAFAATAVLSLLAGV 127
Query: 125 I 125
+
Sbjct: 128 L 128
>gi|330929855|ref|XP_003302800.1| hypothetical protein PTT_14754 [Pyrenophora teres f. teres 0-1]
gi|311321608|gb|EFQ89104.1| hypothetical protein PTT_14754 [Pyrenophora teres f. teres 0-1]
Length = 177
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 5/125 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSS 59
++ + NRP+SPHL IYR T S ++RITG V+ + + + G H +
Sbjct: 47 LAKQRLNRPVSPHLAIYRPQITWLASSLNRITGIVLSGSLYLFGIAYLVAPYTGWHLETQ 106
Query: 60 LRCYMDGSVFEVCLFL----YTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ Y + H L G+R+L WDV + + + + +
Sbjct: 107 SMVATVAAWPAAVKAGLKAFYAFPFFFHSLNGLRHLAWDVGVGFKNQQVIRTGWGVVGLT 166
Query: 116 ILTVL 120
+ L
Sbjct: 167 AVMGL 171
>gi|91228424|ref|ZP_01262349.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio alginolyticus 12G01]
gi|91188008|gb|EAS74315.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio alginolyticus 12G01]
Length = 126
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 56/121 (46%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ T SI+HR++G + ++ ++++ + +
Sbjct: 4 RKSRPVNLDLQTIHFPITAIASILHRVSGVITFVAVGILLWLLSISLSSPMGFMEAADIV 63
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
D + L+ A+ +H+ GGIR+L+ D+ + T AK+ A+ + L+ I
Sbjct: 64 DSFFVKFILWGILTALAYHIAGGIRHLLMDLGHFEELDSGTMSAKVAFGATAVLSLLAGI 123
Query: 125 I 125
+
Sbjct: 124 L 124
>gi|11466547|ref|NP_044796.1| succinate:ubiquinone oxidoreductase subunit 3 [Reclinomonas
americana]
gi|1705531|sp|P80481|C560_RECAM RecName: Full=Succinate dehydrogenase cytochrome b560 subunit;
AltName: Full=Succinate dehydrogenase, subunit III
gi|2258377|gb|AAD11911.1| succinate:ubiquinone oxidoreductase subunit 3 [Reclinomonas
americana]
Length = 144
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++ NRP+SPHL IY+L T +SI HRITG V+ L + + + +
Sbjct: 16 NMNINRPISPHLTIYKLQITNTLSIFHRITGGVLALTLCFFILILKMLNFHLSSYAFYSI 75
Query: 63 YM-----DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASIL 117
G +F F + +H+ G+R+L+WD L+ + I + + L
Sbjct: 76 AYTLNQYSGFLFIAISFFLLLFIFYHLFAGLRHLVWDAGYALEIENVYLTGYIMLGLAFL 135
Query: 118 TVLIVWII 125
LI WII
Sbjct: 136 FTLIAWII 143
>gi|187929230|ref|YP_001899717.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia
pickettii 12J]
gi|187726120|gb|ACD27285.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia
pickettii 12J]
Length = 136
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+IK RP+ ++ + YRL VSI+HR +G++++L P V++ F E +
Sbjct: 3 EAIKKARPVYRNIGLGDIARYRLPWAGKVSILHRASGALMFLLLPFVLYLFEQSLTSEIS 62
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ + +V + WA +HH G+RYLI D+ + +DK A++ A +I S+
Sbjct: 63 FAKFSALLSNGFAKVVVLALIWAYLHHFCAGVRYLILDLHIGIDKASASKSAVSVLIVSL 122
Query: 117 LTVLIV 122
L ++
Sbjct: 123 LLTVVF 128
>gi|54293523|ref|YP_125938.1| succinate dehydrogenase, cytochrome b556 subunit [Legionella
pneumophila str. Lens]
gi|54296562|ref|YP_122931.1| succinate dehydrogenase, cytochrome b556 subunit [Legionella
pneumophila str. Paris]
gi|148360816|ref|YP_001252023.1| succinate dehydrogenase cytochrome b556 subunit C [Legionella
pneumophila str. Corby]
gi|296106120|ref|YP_003617820.1| succinate dehydrogenase cytochrome b-556 subunit [Legionella
pneumophila 2300/99 Alcoy]
gi|53750347|emb|CAH11741.1| succinate dehydrogenase, cytochrome b556 subunit [Legionella
pneumophila str. Paris]
gi|53753355|emb|CAH14805.1| succinate dehydrogenase, cytochrome b556 subunit [Legionella
pneumophila str. Lens]
gi|148282589|gb|ABQ56677.1| succinate dehydrogenase cytochrome b556 subunit C [Legionella
pneumophila str. Corby]
gi|295648021|gb|ADG23868.1| succinate dehydrogenase cytochrome b-556 subunit [Legionella
pneumophila 2300/99 Alcoy]
Length = 124
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 60/121 (49%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RP++ L + P SI+HR++G +++L P V+F C E + + +
Sbjct: 1 MNKKRPINLDLSSLKFPPMAIASILHRVSGVLIFLLFPFVLFILGCSLQSEESFAQTKII 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ +++ L+ + ++I+H++ GIR+LI D+ + A I +++ + +
Sbjct: 61 LANPYYKLLLWAFGASMIYHVIAGIRHLIMDMGFGESLRAGRMSAVSIIALAVILAIFLG 120
Query: 124 I 124
I
Sbjct: 121 I 121
>gi|271499747|ref|YP_003332772.1| succinate dehydrogenase, cytochrome b556 subunit [Dickeya dadantii
Ech586]
gi|270343302|gb|ACZ76067.1| succinate dehydrogenase, cytochrome b556 subunit [Dickeya dadantii
Ech586]
Length = 129
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 5 VKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSLSSQEGFVQAAAI 64
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-----KIATQMAKINIIASILT 118
M + + ++ A+ +H++GG+R+L+ D + + A I ++ S L
Sbjct: 65 MGSFIVKFVVWGILTALAYHIVGGLRHLLMDFGYIEENFEAGSRSAKTSFIITVVLSFLA 124
Query: 119 VLIVW 123
++VW
Sbjct: 125 GVLVW 129
>gi|187926533|ref|YP_001892878.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia
pickettii 12J]
gi|241666044|ref|YP_002984403.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia
pickettii 12D]
gi|187728287|gb|ACD29451.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia
pickettii 12J]
gi|240868071|gb|ACS65731.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia
pickettii 12D]
Length = 158
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 57/110 (51%)
Query: 13 HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVC 72
+ YRL VSI+HR +G++++L P V++ F E + + + +V
Sbjct: 41 DIARYRLPWAGKVSILHRASGALMFLLLPFVLYLFEQSLTSEISFAKFSALLSNGFAKVV 100
Query: 73 LFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ WA +HH G+RYLI D+ + +DK A++ A +I S+L ++
Sbjct: 101 VLALIWAYLHHFCAGVRYLILDLHIGIDKASASKSAVSVLIVSLLLTVVF 150
>gi|315052622|ref|XP_003175685.1| succinate dehydrogenase cytochrome B subunit [Arthroderma gypseum
CBS 118893]
gi|311341000|gb|EFR00203.1| succinate dehydrogenase cytochrome B subunit [Arthroderma gypseum
CBS 118893]
Length = 192
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV-----YLGTPVVVFWFFCIANGEH 55
++S + NRP++PHL IY+ T S + RITG+V+ + +
Sbjct: 70 LASQRLNRPIAPHLSIYKWQVTSVNSSLQRITGAVLSGSLYLFAVSYLASPYLGWDLSSD 129
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
+LS+ + + F+ W + H+ +R+L WD+ K +Q ++
Sbjct: 130 SLSAAMASLPWAGKATVKFVIAWPFMFHVFNSLRHLAWDIGKGFAMKTVSQTGILSAGL 188
>gi|332020713|gb|EGI61118.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
[Acromyrmex echinatior]
Length = 154
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL--SS 59
+++ RPLSPHL IY++ T +SI HR TG ++ + I G +
Sbjct: 29 KNMRLKRPLSPHLTIYQVQLTTLLSITHRTTGIILSSYAMFLGLGTLLIPGGIPCFIETM 88
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ + V L H GIR+L+WD+ + L K + ++++
Sbjct: 89 DNLCLPLPILFVGKTLLALPATFHTYNGIRHLLWDLGMFLTIKEVYSTGYMVSAMAVVSA 148
Query: 120 LIVWII 125
LI+ +
Sbjct: 149 LILAAM 154
>gi|213408543|ref|XP_002175042.1| succinate dehydrogenase (ubiquinone) cytochrome b subunit
[Schizosaccharomyces japonicus yFS275]
gi|212003089|gb|EEB08749.1| succinate dehydrogenase (ubiquinone) cytochrome b subunit
[Schizosaccharomyces japonicus yFS275]
Length = 178
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 5/130 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS- 59
++ + +RP SPHL IY+ T ++S HRITG + + + + S
Sbjct: 49 LAQQRVHRPNSPHLTIYQPQLTWYLSSAHRITGVALSGTLYLFSTAYLLAPAFGYGFDSN 108
Query: 60 ----LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ + F+ + + HM G R+L+WD L K + + S
Sbjct: 109 MIAHAVSQVPVWLKVPAKFIVAYPLAFHMFNGFRHLLWDSIHELTLKGVYRTGYSVLALS 168
Query: 116 ILTVLIVWII 125
+LT + ++
Sbjct: 169 VLTAAYLALL 178
>gi|119476702|ref|ZP_01617012.1| succinate dehydrogenase (C subunit) [marine gamma proteobacterium
HTCC2143]
gi|119449958|gb|EAW31194.1| succinate dehydrogenase (C subunit) [marine gamma proteobacterium
HTCC2143]
Length = 137
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 61/125 (48%), Gaps = 1/125 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++ + RP++ L + SI HRI+G ++ GT V+++ E +SLR
Sbjct: 11 KTVADKRPVNLDLGAMKWPLPAITSITHRISGVILVAGTAVLLWLLDESLTSEEAFNSLR 70
Query: 62 CYMDGSV-FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ S+ F++ ++ A+I+H + G+++L D+ + AK+ I + + ++
Sbjct: 71 SVLASSLIFKLIVWGVMSALIYHSVAGVKHLCMDLGYGESLEGGITAAKLLIAIAAVLIV 130
Query: 121 IVWII 125
+ +
Sbjct: 131 LAGAL 135
>gi|307203720|gb|EFN82680.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
[Harpegnathos saltator]
Length = 140
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-EHTLSSLR 61
+++ RP+SPHL IY +SI HR TG ++ + CI G + L
Sbjct: 16 NMRLKRPMSPHLTIYEFPLPAMLSITHRTTGIILSSYAMFLGLGTLCIPGGIPCAIEILN 75
Query: 62 -CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
Y+ + V L + H+L GIR+L WD+ + L K + + ++ L
Sbjct: 76 DLYIPSLILFVGKTLLALPITFHILNGIRHLAWDLGMFLKIKEVYSTGYVVSALAAISAL 135
Query: 121 IVWII 125
++ +
Sbjct: 136 VLAAM 140
>gi|264679525|ref|YP_003279432.1| succinate dehydrogenase, cytochrome b subunit [Comamonas
testosteroni CNB-2]
gi|299530384|ref|ZP_07043807.1| succinate dehydrogenase, cytochrome b556 subunit [Comamonas
testosteroni S44]
gi|262210038|gb|ACY34136.1| succinate dehydrogenase, cytochrome b subunit [Comamonas
testosteroni CNB-2]
gi|298721609|gb|EFI62543.1| succinate dehydrogenase, cytochrome b556 subunit [Comamonas
testosteroni S44]
Length = 141
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 11/133 (8%)
Query: 1 MSSIK-NNRPLSP------HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG 53
M+ K RP L YRL VSI+HR++G ++ + P +++ F +
Sbjct: 1 MTEQKAKQRPEFRNINFFSDLPTYRLPLAGIVSILHRVSGLLMAILLPFIIWMFDNSISS 60
Query: 54 EHTLSSLRCYMDGSVF---EVCLFLYTWAVIHHMLGGIRYLIWDV-SLCLDKKIATQMAK 109
E + S G ++ WA +HH G+R+L+ DV ++K+ A
Sbjct: 61 EISFDSFTSVFAGPFGWFAKLVCLALIWAYLHHFCAGVRHLVMDVNHHAVNKQTGKSTAA 120
Query: 110 INIIASILTVLIV 122
+ + S+ +++
Sbjct: 121 VVLCISVALTVVL 133
>gi|210076240|ref|XP_504562.2| YALI0E29667p [Yarrowia lipolytica]
gi|199426970|emb|CAG80166.2| YALI0E29667p [Yarrowia lipolytica]
Length = 171
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 13/134 (9%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFC---------IA 51
++ + RP SPHL IY+ T ++S +HR+TG + ++ +
Sbjct: 42 LNKQRALRPTSPHLDIYQPQLTWYLSGLHRVTGVALGGALYALLCAYAAGPALGIHIDST 101
Query: 52 NGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN 111
HT +++ + + F H G+R+L+WD + L K +
Sbjct: 102 TLAHTFAAVPLVAKLPLKALVAF----PFTFHAFNGVRHLVWDFTKELTVKGVYRTGYTV 157
Query: 112 IIASILTVLIVWII 125
+ S+L+ ++ I
Sbjct: 158 LGLSVLSAAVLAFI 171
>gi|66820248|ref|XP_643757.1| succinate dehydrogenase [Dictyostelium discoideum AX4]
gi|74843770|sp|Q8T2T5|C560_DICDI RecName: Full=Succinate dehydrogenase cytochrome b560 subunit,
mitochondrial; Flags: Precursor
gi|60471884|gb|EAL69838.1| succinate dehydrogenase [Dictyostelium discoideum AX4]
Length = 192
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 2/118 (1%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSV 68
P SPHL IY+ +SI+HR TG + LG + + L ++
Sbjct: 72 PTSPHLTIYKFPLPAVMSIMHRATGICLALGITGLAGVTLFAPHDAIHYIQLLHTQYPAL 131
Query: 69 FEVCLFLYTWAVIHHMLGGIRYLIWD-VSLCLDKKIATQMAKINI-IASILTVLIVWI 124
F + +H G+R++IWD L K+ + + ++L+ + ++
Sbjct: 132 VYPAKFAVALPLTYHFCTGVRHIIWDETVKGLSISQIESSGKVLLAVVAVLSTIFTFV 189
>gi|164663263|ref|XP_001732753.1| hypothetical protein MGL_0528 [Malassezia globosa CBS 7966]
gi|159106656|gb|EDP45539.1| hypothetical protein MGL_0528 [Malassezia globosa CBS 7966]
Length = 193
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCI-------ANG 53
+++ +N RP+SPHL IY+ T SI+HR TG+ + +
Sbjct: 60 LNTQRNERPISPHLSIYQPQLTWVSSILHRATGTGMSWALYAYAIGYLAAPHIGLGEMLS 119
Query: 54 EHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLC---LDKKIATQMAKI 110
+L ++ A ++H G+R+L WD+ C +A ++ +
Sbjct: 120 SGSLVDAVSHLPAWAKVSVKAPLAAAFMYHFFNGLRHLAWDMGYCTFLFSHVVANRLTTV 179
Query: 111 NIIASILTVLIV 122
S+ +L+V
Sbjct: 180 QSRFSVRRILLV 191
>gi|260946711|ref|XP_002617653.1| hypothetical protein CLUG_03097 [Clavispora lusitaniae ATCC 42720]
gi|238849507|gb|EEQ38971.1| hypothetical protein CLUG_03097 [Clavispora lusitaniae ATCC 42720]
Length = 180
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 5/123 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV---YLGTPVVVFWFFCIANGEHTL 57
+ + + NRP+SPHL IY+ T +S +HR+TG + + G V ++ +
Sbjct: 51 LVAQRKNRPVSPHLDIYKPQLTWLLSGLHRLTGVGMAGAFYGLTVTYAATSLLSVPFDSA 110
Query: 58 SSLRCYMDGSVFEV--CLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
S + + + H GIR+L+WD L + + + +
Sbjct: 111 SIVTAFASLPFAAKLGAKIAMAYPFAFHFFNGIRHLVWDFGKELTIPGVYRTGYLVLAGT 170
Query: 116 ILT 118
L
Sbjct: 171 ALL 173
>gi|300691091|ref|YP_003752086.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Ralstonia solanacearum PSI07]
gi|299078151|emb|CBJ50794.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Ralstonia solanacearum PSI07]
Length = 136
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+IK RP ++ + YRL VSI+HR +G++++L P V++ F E +
Sbjct: 3 EAIKKARPEFRNIGLGDIAHYRLPWAGKVSILHRASGALMFLLLPFVLYLFEQSLTSEIS 62
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ + +V + WA +HH GIRYLI D+ + +DK +++ A +I S+
Sbjct: 63 FAKFTALLSNGFAKVVVLALIWAYLHHFCAGIRYLILDLHIGIDKTTSSKSAVSVLIVSL 122
Query: 117 LTVLIV 122
L ++
Sbjct: 123 LLTVVF 128
>gi|188534435|ref|YP_001908232.1| Succinate dehydrogenase cytochrome b-556 subunit [Erwinia
tasmaniensis Et1/99]
gi|188029477|emb|CAO97354.1| Succinate dehydrogenase cytochrome b-556 subunit [Erwinia
tasmaniensis Et1/99]
Length = 129
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ L R T SI+HR++G + ++ ++++ +
Sbjct: 3 KTVKKQRPVNLDLSTIRFPLTAIASILHRVSGVITFVSIGILLWLLGLSLSSPEGFLQAS 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMAKINIIASILTVL 120
MD + + ++ A+ +H+ GGIR+++ D L + A+I +++ +
Sbjct: 63 AVMDSFIAKFIMWGILTALAYHIAGGIRHMMMDFGLLGETLETGKFSAQIAFGITVVLSI 122
Query: 121 IVWII 125
+ ++
Sbjct: 123 LAGVL 127
>gi|153838604|ref|ZP_01991271.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio
parahaemolyticus AQ3810]
gi|149748022|gb|EDM58881.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio
parahaemolyticus AQ3810]
Length = 126
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 57/121 (47%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 4 RKSRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLSISLSSHMGFMEAADIV 63
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
DG + L+ A+ +H+ GGIR+L+ D+ + AK+ A+ + L+ I
Sbjct: 64 DGFFVKFILWGILTALAYHIAGGIRHLLMDLGHFEELDSGAMSAKVAFGATAVLSLLAGI 123
Query: 125 I 125
+
Sbjct: 124 L 124
>gi|330445465|ref|ZP_08309117.1| succinate dehydrogenase, cytochrome b556 subunit [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328489656|dbj|GAA03614.1| succinate dehydrogenase, cytochrome b556 subunit [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 133
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 51/118 (43%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RP++ LQ R T SI+HR++G + ++ ++++ + ++
Sbjct: 10 VNKPRPVNLDLQTIRFPLTAIASILHRVSGVITFVSLAILLWLLNLSLSSPDGFAAATSI 69
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
D + L+ A+ +H++ G+R+L+ D+ + K++ + +
Sbjct: 70 TDSFFVKFVLWGVLIALFYHIVLGVRHLLMDLGYFEEMDTGIASTKVSFAIVAVLAVF 127
>gi|259909082|ref|YP_002649438.1| Succinate dehydrogenase cytochrome b-556 subunit [Erwinia
pyrifoliae Ep1/96]
gi|224964704|emb|CAX56221.1| Succinate dehydrogenase cytochrome b-556 subunit [Erwinia
pyrifoliae Ep1/96]
gi|283479108|emb|CAY75024.1| succinate dehydrogenase, cytochrome b556 [Erwinia pyrifoliae DSM
12163]
Length = 129
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ L R T SI+HR++G + ++ ++++ +
Sbjct: 3 KTVKKQRPVNLDLSTIRFPLTAIASILHRVSGVITFVSIGILLWLLGLSLSSPEGFLQAS 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMAKINIIASILTVL 120
MD + + ++ A+ +H+ GGIR+++ D L + A+I ++ +
Sbjct: 63 AVMDSFIVKFIMWGILTALAYHIAGGIRHMMMDFGLLGETLETGKLSAQIAFGITVALSI 122
Query: 121 IVWII 125
+ ++
Sbjct: 123 LAGVL 127
>gi|221065942|ref|ZP_03542047.1| succinate dehydrogenase, cytochrome b556 subunit [Comamonas
testosteroni KF-1]
gi|220710965|gb|EED66333.1| succinate dehydrogenase, cytochrome b556 subunit [Comamonas
testosteroni KF-1]
Length = 141
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 11/133 (8%)
Query: 1 MSSIK-NNRPLSP------HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG 53
M+ K RP L YRL VSI+HR++G ++ + P +++ F +
Sbjct: 1 MTEQKAKQRPEFRNINFFSDLPTYRLPLAGIVSILHRVSGLLMAILLPFIIWMFDHSISS 60
Query: 54 EHTLSSLRCYMDGSVF---EVCLFLYTWAVIHHMLGGIRYLIWDV-SLCLDKKIATQMAK 109
E + S G ++ WA +HH G+R+L+ DV ++K+ A
Sbjct: 61 EISFDSFTSVFAGPFGWFAKLVCLALIWAYLHHFCAGVRHLVMDVNHHAVNKQTGKSTAA 120
Query: 110 INIIASILTVLIV 122
+ + S+ +++
Sbjct: 121 VVLCISVALTVVL 133
>gi|307188808|gb|EFN73391.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
[Camponotus floridanus]
Length = 152
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 2/126 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL- 60
+ + RP+SPHL IY + T +S+ HR TG ++ + I G
Sbjct: 27 KNKRLKRPMSPHLTIYEIQLTSVLSVTHRTTGIMLASYAMFLGLGTLLIPGGIPCFIETV 86
Query: 61 -RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ V + L +H G+R+L WD L K + ++++
Sbjct: 87 DNLCLPLPVLYIGKLLLALPATYHTFNGMRHLAWDFGKFLTIKEVYSTGYLVSALAVISA 146
Query: 120 LIVWII 125
L + +
Sbjct: 147 LALAAM 152
>gi|294655076|ref|XP_457157.2| DEHA2B04488p [Debaryomyces hansenii CBS767]
gi|199429671|emb|CAG85151.2| DEHA2B04488p [Debaryomyces hansenii]
Length = 147
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ + + NRP SPHL IY+L TM +S +HR+TG + G + + + +
Sbjct: 18 LVAQRKNRPTSPHLTIYQLQLTMVMSGLHRVTGVFMASGFYALTCGYAAASILSIPFDAA 77
Query: 61 R-----CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ +V + ++H G+R++IWD L K + + +
Sbjct: 78 TLVGAFAGLPVAVKLAAKAAMAYPFVYHAFNGVRHIIWDFGKELTIKGVYRTGYVVTALT 137
Query: 116 IL 117
+
Sbjct: 138 AI 139
>gi|58258559|ref|XP_566692.1| succinate dehydrogenase (ubiquinone) [Cryptococcus neoformans var.
neoformans JEC21]
gi|134106659|ref|XP_778340.1| hypothetical protein CNBA3400 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50261043|gb|EAL23693.1| hypothetical protein CNBA3400 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57222829|gb|AAW40873.1| succinate dehydrogenase (ubiquinone), putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 221
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 4/124 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSV----VYLGTPVVVFWFFCIANGEHT 56
++S + +RP SPHL IY+ T ++S +HRITG +YL +
Sbjct: 92 LNSQRQHRPTSPHLAIYQPQLTWYLSSLHRITGVAFGGALYLSAMAYLLHPLVPVIDSAH 151
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
L L + G F+ H G+R+L WD+ L K + + A++
Sbjct: 152 LIQLVHDLPGWFKGSAKFIIALPFTFHCYNGLRHLNWDIGKALTIKGVYRTGYAVLGATV 211
Query: 117 LTVL 120
L+ L
Sbjct: 212 LSSL 215
>gi|153213690|ref|ZP_01948942.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
1587]
gi|153801967|ref|ZP_01956553.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
MZO-3]
gi|153826059|ref|ZP_01978726.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
MZO-2]
gi|153831292|ref|ZP_01983959.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
623-39]
gi|229513746|ref|ZP_04403208.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholerae
TMA 21]
gi|229522048|ref|ZP_04411465.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholerae
TM 11079-80]
gi|229524097|ref|ZP_04413502.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholerae
bv. albensis VL426]
gi|229528893|ref|ZP_04418283.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholerae
12129(1)]
gi|254286792|ref|ZP_04961745.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
AM-19226]
gi|262190295|ref|ZP_06048563.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholerae
CT 5369-93]
gi|297579595|ref|ZP_06941523.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio cholerae RC385]
gi|124115751|gb|EAY34571.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
1587]
gi|124122481|gb|EAY41224.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
MZO-3]
gi|148873223|gb|EDL71358.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
623-39]
gi|149740176|gb|EDM54329.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
MZO-2]
gi|150423083|gb|EDN15031.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
AM-19226]
gi|229332667|gb|EEN98153.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholerae
12129(1)]
gi|229337678|gb|EEO02695.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholerae
bv. albensis VL426]
gi|229340973|gb|EEO05978.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholerae
TM 11079-80]
gi|229348927|gb|EEO13884.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholerae
TMA 21]
gi|262033824|gb|EEY52296.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholerae
CT 5369-93]
gi|297537189|gb|EFH76022.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio cholerae RC385]
Length = 130
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ R + SI+HR++G + ++ ++++ + +
Sbjct: 8 RKSRPVNLDLQTIRFPISAIASILHRVSGVITFVAVGILLWLLSLSLSSPVGFMEASNIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIA----TQMAKINIIASILTVL 120
D + L+ A+ +H+ GGIR+L+ D+ + + ++ S+L +
Sbjct: 68 DSFFVKFVLWGILTALAYHIAGGIRHLLMDLGHFEELESGAASAKVAFAATVVLSLLAGV 127
Query: 121 IVW 123
+VW
Sbjct: 128 LVW 130
>gi|307545706|ref|YP_003898185.1| succinate dehydrogenase, cytochrome b subunit [Halomonas elongata
DSM 2581]
gi|307217730|emb|CBV43000.1| succinate dehydrogenase, cytochrome b subunit [Halomonas elongata
DSM 2581]
Length = 125
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR-C 62
+ + RP++ L + SI HRITG ++++G + + +S++
Sbjct: 1 MNSKRPVNLDLSTIQFPLPALTSIAHRITGVILFIGLIFGFWALDASLSSAEGFASVQHA 60
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ ++ + A+ H + GI++L+ D+ + + + + A+I + S + +++
Sbjct: 61 LAHNFLAKLIAWGLLSALAFHFVAGIKHLLMDIDIGVTLEGGVKKAQITVAVSAVLIILA 120
Query: 123 WI 124
+
Sbjct: 121 GV 122
>gi|254567019|ref|XP_002490620.1| Putative protein of unknown function [Pichia pastoris GS115]
gi|238030416|emb|CAY68340.1| Putative protein of unknown function [Pichia pastoris GS115]
Length = 177
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 5/124 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ + + RP SPHL IY T +S HRITG + G + + + +S
Sbjct: 48 LVAQRKVRPSSPHLTIYAPQLTWILSSFHRITGVGLAGGFYALTCGYAAANLLGYDFTSA 107
Query: 61 RCY-----MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ + + + + H+ G+R+L+WD L + + ++
Sbjct: 108 DIVGLYSQLPEYIKYSVKAIAAYPFVFHISNGLRHLVWDFGKELTIPGVYRTGYAVLAST 167
Query: 116 ILTV 119
L
Sbjct: 168 ALVA 171
>gi|242788126|ref|XP_002481157.1| succinate dehydrogenase, putative [Talaromyces stipitatus ATCC
10500]
gi|218721304|gb|EED20723.1| succinate dehydrogenase, putative [Talaromyces stipitatus ATCC
10500]
Length = 194
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 57/135 (42%), Gaps = 10/135 (7%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ + RP+SPH+ IY+ SI+ R +G + G V + + L
Sbjct: 60 LEQQRLRRPVSPHMTIYKWQYQSLTSILQRFSGIFLAGGLYVFATGYVLTPIVSPGYTDL 119
Query: 61 RCY---------MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKI 110
+ G + V F + +H G+++L+WD+ + L K+ ++A +
Sbjct: 120 FDIETIVGALREVPGWIKGVGKFALSMPFTYHFYNGVKHLMWDLGVGLSHKRFFGRLAWV 179
Query: 111 NIIASILTVLIVWII 125
S+++ L + ++
Sbjct: 180 VAGFSVVSSLGLAVL 194
>gi|256822762|ref|YP_003146725.1| succinate dehydrogenase, cytochrome b556 subunit [Kangiella
koreensis DSM 16069]
gi|256796301|gb|ACV26957.1| succinate dehydrogenase, cytochrome b556 subunit [Kangiella
koreensis DSM 16069]
Length = 125
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 57/121 (47%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RP + +L R SI+HRITG +++ P++++ +
Sbjct: 1 MNQKRPTNLNLATIRFPVPAISSILHRITGVILFFAVPILLWMLQKSLTPAGFSELQTMF 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ +++ L+ T AV +H++ G+R+L+ D+ + + + A + II S + ++
Sbjct: 61 AESFLWQFILWAITTAVAYHVIAGVRHLLMDMDIGESLEGGRRGAWLVIILSAVAAAVLG 120
Query: 124 I 124
+
Sbjct: 121 V 121
>gi|311104829|ref|YP_003977682.1| succinate dehydrogenase, cytochrome b556 subunit [Achromobacter
xylosoxidans A8]
gi|310759518|gb|ADP14967.1| succinate dehydrogenase, cytochrome b556 subunit [Achromobacter
xylosoxidans A8]
Length = 137
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 63/128 (49%), Gaps = 6/128 (4%)
Query: 3 SIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA-NGEHT 56
+ RP ++ I YRL +SI+HR++G++++L P+V+ F + T
Sbjct: 4 TAAKPRPQFRNIGIAQLASYRLPLAGKLSILHRVSGALLFLCLPLVILPLFAASVAAPQT 63
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+++ Y + ++ + W +HH GIRYL+ D+ + +DK A + A + S+
Sbjct: 64 FAAVAAYAGNPIVKLVFLVLIWGYLHHFCAGIRYLLLDLHIGIDKLSAKKSAGVVFGVSL 123
Query: 117 LTVLIVWI 124
L+ +
Sbjct: 124 ALTLVFAL 131
>gi|145588943|ref|YP_001155540.1| succinate dehydrogenase, cytochrome b subunit [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145047349|gb|ABP33976.1| succinate dehydrogenase subunit C [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 139
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 1 MSSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
++K +RP+ ++ + YRL VSI+HRI+G+V++L P +++ E
Sbjct: 5 QQNVKKDRPVYRNIGLAQLVKYRLPWAGKVSILHRISGAVLFLMLPFLLYLLDQSLASEV 64
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ + + ++ W +HH GIRYL+ D+ + ++K A + A
Sbjct: 65 SYQKFQAITGHVLVKIVCLGLIWCFLHHFCAGIRYLLLDLEIGVEKSEANRSAIFVFCLG 124
Query: 116 ILTVLIVWI 124
+ +V +
Sbjct: 125 VALTAVVGL 133
>gi|107026777|ref|YP_624288.1| succinate dehydrogenase, cytochrome b subunit [Burkholderia
cenocepacia AU 1054]
gi|116692031|ref|YP_837564.1| succinate dehydrogenase, cytochrome b subunit [Burkholderia
cenocepacia HI2424]
gi|170735976|ref|YP_001777236.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
cenocepacia MC0-3]
gi|254248724|ref|ZP_04942044.1| Succinate dehydrogenase, cytochrome b subunit [Burkholderia
cenocepacia PC184]
gi|105896151|gb|ABF79315.1| succinate dehydrogenase subunit C [Burkholderia cenocepacia AU
1054]
gi|116650031|gb|ABK10671.1| succinate dehydrogenase subunit C [Burkholderia cenocepacia HI2424]
gi|124875225|gb|EAY65215.1| Succinate dehydrogenase, cytochrome b subunit [Burkholderia
cenocepacia PC184]
gi|169818164|gb|ACA92746.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
cenocepacia MC0-3]
Length = 138
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 65/129 (50%), Gaps = 7/129 (5%)
Query: 3 SIKNNRPLSPHLQI------YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+++ RP ++ I YR+ +SI+HRI+G++++L P ++F F E +
Sbjct: 4 AVRKPRPEYRNIGIGDITLKYRMPLAAILSILHRISGALLFLFLPFLLFLFDQSLTSELS 63
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIAS 115
+ ++ V ++ + +WA HH GIR+L+ DV+ + K+ + A + + S
Sbjct: 64 FEVFKAFLSNIVVKLVVLALSWAFFHHFCAGIRHLLMDVNHDAVTKEGGKRTAVVVFVVS 123
Query: 116 ILTVLIVWI 124
I + + +
Sbjct: 124 IALTIAMAL 132
>gi|328351008|emb|CCA37408.1| hypothetical protein PP7435_Chr1-1289 [Pichia pastoris CBS 7435]
Length = 175
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 5/124 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ + + RP SPHL IY T +S HRITG + G + + + +S
Sbjct: 46 LVAQRKVRPSSPHLTIYAPQLTWILSSFHRITGVGLAGGFYALTCGYAAANLLGYDFTSA 105
Query: 61 RCY-----MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ + + + + H+ G+R+L+WD L + + ++
Sbjct: 106 DIVGLYSQLPEYIKYSVKAIAAYPFVFHISNGLRHLVWDFGKELTIPGVYRTGYAVLAST 165
Query: 116 ILTV 119
L
Sbjct: 166 ALVA 169
>gi|45198725|ref|NP_985754.1| AFR207Cp [Ashbya gossypii ATCC 10895]
gi|44984735|gb|AAS53578.1| AFR207Cp [Ashbya gossypii ATCC 10895]
Length = 166
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV-----YLGTPVVVFWFFCIANGEH 55
+ + + NRP+SPHL IY+ T ++S VHRI+G ++ + V +
Sbjct: 36 LVAQRKNRPVSPHLTIYQPQLTWYLSSVHRISGVLLGGAFYAVTISFGVSALLGLGLNAE 95
Query: 56 TLSS-LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
L++ +M + H GIR+LIWD+ L K + +
Sbjct: 96 NLATWYHSHMPTWGDLTVKGGAAYLFAFHFGNGIRHLIWDMGRELSLKGVYRTGYAVLGL 155
>gi|163856130|ref|YP_001630428.1| succinate dehydrogenase cytochrome b-556 subunit, transmembrane
component [Bordetella petrii DSM 12804]
gi|163259858|emb|CAP42159.1| Succinate dehydrogenase cytochrome b-556 subunit, transmembrane
component [Bordetella petrii]
Length = 137
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 63/128 (49%), Gaps = 6/128 (4%)
Query: 3 SIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA-NGEHT 56
+ RP ++ I YRL +SI+HR++G++++L P+V+ F + +
Sbjct: 4 TAAKPRPQFRNIGIAQIARYRLPLAGKLSILHRVSGALLFLCLPLVILPLFAASVASPES 63
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ + Y + ++ L + W +HH GIRYL+ D+ + +DK A + A + S+
Sbjct: 64 YAQVAQYAGNPLVKLVLLVLVWGYLHHFCAGIRYLVLDLHIGIDKVSAQKSAGVVFGVSL 123
Query: 117 LTVLIVWI 124
L+ +
Sbjct: 124 ALTLVFAL 131
>gi|88703466|ref|ZP_01101182.1| Succinate dehydrogenase cytochrome b-556 subunit [Congregibacter
litoralis KT71]
gi|88702180|gb|EAQ99283.1| Succinate dehydrogenase cytochrome b-556 subunit [Congregibacter
litoralis KT71]
Length = 124
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 61/122 (50%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K+NRP++ + RL T + SI+HR++G ++ + + ++++ G + + L
Sbjct: 1 MKDNRPVNLDIGTIRLPITAYASILHRVSGVIMVVASFLLLWALDLSLAGPESYARLGEL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + ++ A+++H G+++LI D + A++ + ++ +++
Sbjct: 61 FGSPLLKFVIWGIATALLYHSFAGVKHLIMDFGVGESMDGGVLGARLVFALTAISAVLIG 120
Query: 124 II 125
++
Sbjct: 121 VV 122
>gi|218458002|ref|ZP_03498093.1| succinate dehydrogenase, cytochrome b556 subunit [Rhizobium etli
Kim 5]
Length = 90
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 49/75 (65%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M+++ NNRPLSPHLQIY+ IPTM +SIVHRITG +Y+GT +V +W A+G+ +
Sbjct: 16 MANVTNNRPLSPHLQIYKPIPTMVMSIVHRITGGALYVGTLLVAWWLIAAASGQASYDWA 75
Query: 61 RCYMDGSVFEVCLFL 75
+ + ++ L
Sbjct: 76 NWVLGSLLGKLVLLG 90
>gi|212543951|ref|XP_002152130.1| succinate dehydrogenase, putative [Penicillium marneffei ATCC
18224]
gi|210067037|gb|EEA21130.1| succinate dehydrogenase, putative [Penicillium marneffei ATCC
18224]
Length = 200
Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 10/135 (7%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ + RP+SPH+ IY+ SI+ R +G + G V + L +
Sbjct: 66 LEKQRLRRPVSPHITIYKWQYQSLTSILQRFSGMFLAGGIYVFAIGYLVAPTISPGLEQV 125
Query: 61 RCY---------MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKI 110
+ G F +H G+++L+WD + L K++ + A I
Sbjct: 126 FDLETIVSAAREVPGWAKSGGKFALALPFTYHFFNGVKHLMWDSGIGLAHKRLFGRFAWI 185
Query: 111 NIIASILTVLIVWII 125
S+++ L + ++
Sbjct: 186 VAGCSVVSSLGLAVL 200
>gi|119945916|ref|YP_943596.1| succinate dehydrogenase, cytochrome b subunit [Psychromonas
ingrahamii 37]
gi|119864520|gb|ABM03997.1| succinate dehydrogenase subunit C [Psychromonas ingrahamii 37]
Length = 144
Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
++ +RP + L + T SI+HRI+G +V++ + + E +++ Y
Sbjct: 21 VRRDRPKNLDLTTVQFPITATASILHRISGIIVFIALAIFLTLLNQSLTSETDFNNVMGY 80
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINI----IASILTV 119
+D ++ + +H++ G+R++I D+ + + A AK+ I S+LT
Sbjct: 81 IDNFFIGFIIWAALTGLTYHIVFGVRHMIQDLGYWEELESAALSAKVGFIITAILSVLTG 140
Query: 120 LIVW 123
++VW
Sbjct: 141 VLVW 144
>gi|292487649|ref|YP_003530522.1| succinate dehydrogenase, cytochrome b556 [Erwinia amylovora
CFBP1430]
gi|292898886|ref|YP_003538255.1| succinate dehydrogenase cytochrome b-556 subunit [Erwinia amylovora
ATCC 49946]
gi|291198734|emb|CBJ45843.1| succinate dehydrogenase cytochrome b-556 subunit [Erwinia amylovora
ATCC 49946]
gi|291553069|emb|CBA20114.1| succinate dehydrogenase, cytochrome b556 [Erwinia amylovora
CFBP1430]
gi|312171757|emb|CBX80015.1| succinate dehydrogenase, cytochrome b556 [Erwinia amylovora ATCC
BAA-2158]
Length = 129
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ L R T SI+HR++G + ++ ++++ +
Sbjct: 3 KTLKKQRPVNLDLSTIRFPLTAIASILHRVSGVITFVSIGILLWLLGLSLSSPEGFLQAS 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMAKINIIASILTVL 120
MD + + ++ A+ +H+ GGIR+++ D L + A+I +++ +
Sbjct: 63 AVMDSFIAKFIMWGILTALAYHIAGGIRHMMMDFGLLGETLETGKFSAQIAFGITVVLSI 122
Query: 121 IVWII 125
+ ++
Sbjct: 123 LAGVL 127
>gi|254460410|ref|ZP_05073826.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacterales
bacterium HTCC2083]
gi|206676999|gb|EDZ41486.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacteraceae
bacterium HTCC2083]
Length = 103
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 54/102 (52%)
Query: 24 FVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHH 83
SI+ RITG+ + L ++V+WF A E + ++ +V LFL W + +H
Sbjct: 1 MTSILTRITGNAMLLAALLIVWWFLAAATSESYFAVANGFLTSWFGDVVLFLSLWGMWYH 60
Query: 84 MLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
L G+R+LIWD ++ L+ A +M I SIL LI II
Sbjct: 61 TLAGVRHLIWDNAIGLEINTAEKMGYAVIGGSILLTLITVII 102
>gi|212543953|ref|XP_002152131.1| succinate dehydrogenase, putative [Penicillium marneffei ATCC
18224]
gi|210067038|gb|EEA21131.1| succinate dehydrogenase, putative [Penicillium marneffei ATCC
18224]
Length = 199
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 10/135 (7%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ + RP+SPH+ IY+ SI+ R +G + G V + L +
Sbjct: 65 LEKQRLRRPVSPHITIYKWQYQSLTSILQRFSGMFLAGGIYVFAIGYLVAPTISPGLEQV 124
Query: 61 RCY---------MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKI 110
+ G F +H G+++L+WD + L K++ + A I
Sbjct: 125 FDLETIVSAAREVPGWAKSGGKFALALPFTYHFFNGVKHLMWDSGIGLAHKRLFGRFAWI 184
Query: 111 NIIASILTVLIVWII 125
S+++ L + ++
Sbjct: 185 VAGCSVVSSLGLAVL 199
>gi|330820918|ref|YP_004349780.1| Succinate dehydrogenase, cytochrome b subunit [Burkholderia
gladioli BSR3]
gi|327372913|gb|AEA64268.1| Succinate dehydrogenase, cytochrome b subunit [Burkholderia
gladioli BSR3]
Length = 138
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 65/130 (50%), Gaps = 7/130 (5%)
Query: 2 SSIKNNRPLSPHLQI------YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
+++ RP ++ I YRL +SI HRI+G++++L P ++F F E
Sbjct: 3 EAVRKPRPEYRNIGIGDITRHYRLPIAGQLSIFHRISGALLFLSLPFLLFLFDKSLTSEI 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIA 114
+ + ++ + ++ + + WA +HH GIR+L+ DV+ + K+ + A + +
Sbjct: 63 SFDVFKAFLSNIIVKLVVLVLAWAFLHHFCAGIRHLLMDVNHDAVTKESGKRTAIVVFVV 122
Query: 115 SILTVLIVWI 124
S+ L+ +
Sbjct: 123 SLALTLVFAL 132
>gi|254672872|emb|CBA07129.1| succinate dehydrogenase cytochrome b-556 subunit [Neisseria
meningitidis alpha275]
Length = 114
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 54/112 (48%)
Query: 14 LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCL 73
+ RL VSI+HRI+G +++ P ++++ + E + R + + ++ L
Sbjct: 1 MPNIRLPIPGIVSILHRISGVGLFIMLPFLLYFLSGTLSQESAFETYRAIVSHPLVKLVL 60
Query: 74 FLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
WA +HH L GIR+L D L+ A AK ++++ +++ +
Sbjct: 61 IGVLWAYLHHSLAGIRFLFLDAHKGLELNTARNTAKAVFASALVLTVVLGAL 112
>gi|254450977|ref|ZP_05064414.1| succinate dehydrogenase, cytochrome b556 subunit [Octadecabacter
antarcticus 238]
gi|198265383|gb|EDY89653.1| succinate dehydrogenase, cytochrome b556 subunit [Octadecabacter
antarcticus 238]
Length = 103
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 53/102 (51%)
Query: 24 FVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHH 83
SI R+TG+ + +G ++V+WF +A+G + +M ++ +F + +H
Sbjct: 1 MTSIFTRLTGNALIVGALLIVWWFSALASGPEAYARANGFMTSWFGDLVMFGSVACLWYH 60
Query: 84 MLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
L G+R+LIWD LD + + + + ++ S+L + I+
Sbjct: 61 TLAGVRHLIWDSGHMLDVERSERAGQAIVLVSVLLTIFTVIV 102
>gi|85711267|ref|ZP_01042326.1| Succinate dehydrogenase/fumarate reductase cytochrome b subunit
[Idiomarina baltica OS145]
gi|85694768|gb|EAQ32707.1| Succinate dehydrogenase/fumarate reductase cytochrome b subunit
[Idiomarina baltica OS145]
Length = 156
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 56/121 (46%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ L + SI+HR++G ++ + +++ F +G + +
Sbjct: 33 VKKERPVNLDLSTIQFPAAAKASILHRVSGVIMLVSLAFLIWAFATSLSGPEGFAQVESI 92
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
M + + + A+ H++ GIR+LI D+ + A +I+ SI+ ++V
Sbjct: 93 MTSFIAKFIGWGILTALGFHLIIGIRHLIMDMGFWEELDSGRASATASIVISIIVSVLVG 152
Query: 124 I 124
+
Sbjct: 153 V 153
>gi|317401832|gb|EFV82442.1| succinate dehydrogenase cytochrome B subunit [Achromobacter
xylosoxidans C54]
Length = 138
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 3 SIKNNRPLSPHLQI------YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA-NGEH 55
+ RP ++ + YRL +SI+HRI+G +++L P+V+ F +
Sbjct: 4 TAAKPRPQFRNIGLAQVAFSYRLPLAGKLSILHRISGILLFLCLPLVILPLFAASVASPQ 63
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
T +++ Y + ++ L + W +HH GIRYL+ D+ L +DK A + A + S
Sbjct: 64 TFAAVAAYAGNPIVKLVLLVLIWGYLHHFCAGIRYLLLDLHLGIDKLSAKKSAGVVFGVS 123
Query: 116 ILTVLIVWI 124
+ L+ +
Sbjct: 124 LALTLVFAL 132
>gi|170702918|ref|ZP_02893759.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
ambifaria IOP40-10]
gi|170132177|gb|EDT00664.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
ambifaria IOP40-10]
Length = 138
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 65/129 (50%), Gaps = 7/129 (5%)
Query: 3 SIKNNRPLSPHLQI------YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+++ RP ++ I YR+ +SI+HR++G++++L P V+F F E +
Sbjct: 4 AVRKPRPEYRNIGIGDITLKYRMPLAAILSILHRVSGALLFLFLPFVLFLFDQSLTSELS 63
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIAS 115
+ ++ V ++ + +WA HH GIR+L+ DV+ + K+ + A + + S
Sbjct: 64 FEVFKAFLSNIVVKLIVLALSWAFFHHFCAGIRHLLMDVNHDAVTKEGGKRTAVVVFVVS 123
Query: 116 ILTVLIVWI 124
I + + +
Sbjct: 124 IALTIAMAL 132
>gi|329120253|ref|ZP_08248921.1| succinate dehydrogenase cytochrome b558 subunit [Neisseria
bacilliformis ATCC BAA-1200]
gi|327462594|gb|EGF08917.1| succinate dehydrogenase cytochrome b558 subunit [Neisseria
bacilliformis ATCC BAA-1200]
Length = 127
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQ--IYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
RP+ + I L VSI+HR +G +++L PV++ + + +S +
Sbjct: 2 QTKKRPVFLEMPVLIRALPVPGIVSILHRASGVIMFLMVPVLLMLLDGSLSSGESFASYK 61
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ ++ L WA +HH+ GIR+L D +D + + AK+ + S+ +I
Sbjct: 62 AVASHPLVKLILIGVLWAFLHHLCAGIRFLFLDAHKGVDLQTCRKTAKLVLAVSLSLTVI 121
Query: 122 VWI 124
+ +
Sbjct: 122 LGV 124
>gi|329897269|ref|ZP_08272007.1| Succinate dehydrogenase cytochrome b-556 subunit [gamma
proteobacterium IMCC3088]
gi|328921265|gb|EGG28661.1| Succinate dehydrogenase cytochrome b-556 subunit [gamma
proteobacterium IMCC3088]
Length = 124
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K+ RP++ + +L T + SI+HRI+G +++ V+++ + +S+
Sbjct: 1 MKDTRPVNLDIATIKLPITAYASILHRISGVFLFVAIGVMIYALDLSLSSAEGFASVGAA 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI-- 121
+D ++ ++ +I+H + G+++LI D+ + ++I + S + + +
Sbjct: 61 LDSLFAKLVVWAVLSGLIYHSVAGVKHLIMDMGYGETYEGGVFGSRITFLVSAVMIALAG 120
Query: 122 VWI 124
+W+
Sbjct: 121 LWV 123
>gi|171059387|ref|YP_001791736.1| succinate dehydrogenase, cytochrome b556 subunit [Leptothrix
cholodnii SP-6]
gi|170776832|gb|ACB34971.1| succinate dehydrogenase, cytochrome b556 subunit [Leptothrix
cholodnii SP-6]
Length = 142
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 68/134 (50%), Gaps = 12/134 (8%)
Query: 1 MSSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE- 54
M+ RP+ ++ I YRL P VSI+HR++G++++L P+++++F E
Sbjct: 1 MADSTPQRPVFRNIHITDIASYRLPPAGIVSILHRVSGAMMFLLLPLIIWFFDTSVTSEV 60
Query: 55 ------HTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
SS ++ G + ++ WA +HH + G+R+L D + + K+ A
Sbjct: 61 SYEEFTAAFSSGIGFVPGVLVKLVALGLIWAYLHHFIAGVRHLWMDATHSVTKQHGHSSA 120
Query: 109 KINIIASILTVLIV 122
+ +++S+L L +
Sbjct: 121 LVTLVSSVLLTLAL 134
>gi|299750219|ref|XP_001836610.2| succinate dehydrogenase cytochrome b560 subunit [Coprinopsis
cinerea okayama7#130]
gi|298408800|gb|EAU85181.2| succinate dehydrogenase cytochrome b560 subunit [Coprinopsis
cinerea okayama7#130]
Length = 178
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 2/124 (1%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT-PVVVFWFFCIANGEHT-LS 58
++ + RP SPH IY+ T SI +R+TG+ + + + + + +
Sbjct: 51 LNKQRLKRPSSPHFTIYQPQLTWLGSIANRVTGAGLSVLLYGFSIAYLIAPGTFDSAHVV 110
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
+ V + +H G+R+L WD L K A + + ++
Sbjct: 111 EFVAGLPDGVKYAGKAILAAPFSYHAWNGLRHLAWDAGKFLSVKGAYATGYAVLGLTGVS 170
Query: 119 VLIV 122
+++
Sbjct: 171 TVVL 174
>gi|238024241|ref|YP_002908473.1| succinate dehydrogenase, cytochrome b subunit [Burkholderia glumae
BGR1]
gi|237878906|gb|ACR31238.1| Succinate dehydrogenase, cytochrome b subunit [Burkholderia glumae
BGR1]
Length = 138
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 66/130 (50%), Gaps = 7/130 (5%)
Query: 2 SSIKNNRPLSPHLQI------YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
+++ RP ++ I YRL +SI HR++G++++L P +++ F E
Sbjct: 3 EAVRKPRPEYRNIGIGDITLKYRLPLAGQLSIFHRVSGALLFLSLPFLLYLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIA 114
+ + + V ++ + + +WA +HH GIR+L+ DV+ + K+ + A + +
Sbjct: 63 SFDVFKAFFSNIVVKLIVLVLSWAFLHHFCAGIRHLLMDVNHDAVTKEGGKRTAAVVFVV 122
Query: 115 SILTVLIVWI 124
S+ L+V +
Sbjct: 123 SLALTLVVAL 132
>gi|316972827|gb|EFV56474.1| putative succinate dehydrogenase, cytochrome b556 subunit
[Trichinella spiralis]
Length = 185
Score = 99.7 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL--RC 62
RPLSPHL +Y+ + T VS +HRI+G V+ + TL
Sbjct: 60 NLKRPLSPHLTVYKPMLTWMVSGLHRISGVVMGTTVALFSIGLMAAPFDFTTLIEYIRNL 119
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
++ + W + H L G+R+L +D++ D + + S++ I+
Sbjct: 120 HLPVVFVYAVKYAIAWPLTFHTLNGVRFLAFDLAKGTDIPTVYKTGWTVVGLSLVIAAIL 179
>gi|254586589|ref|XP_002498862.1| ZYRO0G20350p [Zygosaccharomyces rouxii]
gi|238941756|emb|CAR29929.1| ZYRO0G20350p [Zygosaccharomyces rouxii]
Length = 178
Score = 99.7 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 6/124 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS- 59
+ + + NRP+SPHL IY+ T ++S +HR++G ++ + F L++
Sbjct: 48 LRAQRKNRPISPHLTIYQPQMTWYLSSLHRVSGVMLGAAFYCLTIAFGVSTLFGLGLNTE 107
Query: 60 -----LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
+ + + H+ G+R+L+WD+ + + +
Sbjct: 108 NLTTWYKEKVPTWFDWTAKGGVAYLFAFHISNGVRHLVWDLGKQVTNPGVIRTGWAVLAF 167
Query: 115 SILT 118
+ +
Sbjct: 168 TAVA 171
>gi|317047341|ref|YP_004114989.1| succinate dehydrogenase, cytochrome b556 subunit [Pantoea sp.
At-9b]
gi|316948958|gb|ADU68433.1| succinate dehydrogenase, cytochrome b556 subunit [Pantoea sp.
At-9b]
Length = 129
Score = 99.7 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ L R T SI+HR++G + ++ ++++ +
Sbjct: 3 KTVKKQRPVNLDLSTIRFPVTAISSILHRVSGVITFVALGILLWLLGLSLSSPEGFLQAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASILTVL 120
MD + ++ A+ +H++GGIR+++ D + ++ T+ A+ + +++ +
Sbjct: 63 SIMDSFFAKFIMWGILTALAYHVVGGIRHMLADFGFMEETLQVGTRSAQAAFVITVVLSI 122
Query: 121 IVWII 125
+ ++
Sbjct: 123 LAGVL 127
>gi|148284919|ref|YP_001249009.1| succinate dehydrogenase, cytochrome b556 subunit [Orientia
tsutsugamushi str. Boryong]
gi|146740358|emb|CAM80791.1| succinate dehydrogenase, cytochrome b556 subunit [Orientia
tsutsugamushi str. Boryong]
Length = 116
Score = 99.7 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 10 LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVF 69
+SPH+ IYR+ +M +SI+HR++G V+ G ++ +W + + + +
Sbjct: 1 MSPHITIYRMQMSMILSILHRLSGMAVFGGASIITWWLILCVYSDFDRIVVDIFYNLWFQ 60
Query: 70 EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
+ +L + H+ GIR+LIWD K I + SI+
Sbjct: 61 ALI-YLTIFTTCFHLCTGIRHLIWDTGYGFSIKYINISGWIAVALSIIV 108
>gi|29420823|dbj|BAC66633.1| succinate dehydrogenase cytochrome b560 subunit [Coprinopsis
cinerea]
Length = 179
Score = 99.7 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 2/124 (1%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT-PVVVFWFFCIANGEHT-LS 58
++ + RP SPH IY+ T SI +R+TG+ + + + + + +
Sbjct: 52 LNKQRLKRPSSPHFTIYQPQLTWLGSIANRVTGAGLSVLLYGFSIAYLIAPGTFDSAHVV 111
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
+ V + +H G+R+L WD L K A + + ++
Sbjct: 112 EFVAGLPDGVKYAGKAILAAPFSYHAWNGLRHLAWDAGKFLSVKGAYATGYAVLGLTGVS 171
Query: 119 VLIV 122
+++
Sbjct: 172 TVVL 175
>gi|91208853|ref|YP_539014.1| succinate dehydrogenase subunit 3 [Physcomitrella patens]
gi|90991393|dbj|BAE93085.1| succinate dehydrogenase subunit 3 [Physcomitrella patens]
Length = 131
Score = 99.7 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFW-----FFCIANGEHTLS 58
+K NRPLSPHL IY+ T SI HRI+G+ + + + + + +
Sbjct: 1 MKINRPLSPHLTIYKPQLTSTFSIFHRISGAFLASMVFFSILFLKIGDLNLTSYYLYRYA 60
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
+ + + A+ +HM GIR+L+WD+ L+ I + +
Sbjct: 61 FSFTFYFHWLISSVVNFSLLALCYHMSNGIRHLLWDLGFFLELSKVYTSGIIMLFCAAFL 120
Query: 119 VL 120
+
Sbjct: 121 AV 122
>gi|172062859|ref|YP_001810510.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
ambifaria MC40-6]
gi|171995376|gb|ACB66294.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
ambifaria MC40-6]
Length = 138
Score = 99.7 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Query: 3 SIKNNRPLSPHLQI------YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+++ RP ++ I YR+ +SI+HR++G++++L P ++F F E +
Sbjct: 4 AVRKPRPEYRNIGIGDITLKYRMPLAAILSILHRVSGALLFLFLPFLLFLFDQSLTSELS 63
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIAS 115
+ ++ V ++ + +WA +HH GIR+L+ DV+ + K+ + A + + S
Sbjct: 64 FEVFKAFLSNIVVKLIVLALSWAFLHHFCAGIRHLLMDVNHDAVSKEGGKRTAVVVFVVS 123
Query: 116 ILTVLIVWI 124
I + + +
Sbjct: 124 IALTIAMAL 132
>gi|115358062|ref|YP_775200.1| succinate dehydrogenase, cytochrome b subunit [Burkholderia
ambifaria AMMD]
gi|115283350|gb|ABI88866.1| succinate dehydrogenase subunit C [Burkholderia ambifaria AMMD]
Length = 138
Score = 99.7 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Query: 3 SIKNNRPLSPHLQI------YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+++ RP ++ I YR+ +SI+HR++G++++L P V+F F E +
Sbjct: 4 AVRKPRPEYRNIGIGDITLKYRMPLAAILSILHRVSGALLFLFLPFVLFLFDQSLTSELS 63
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIAS 115
+ ++ V ++ + +WA +HH GIR+L+ DV+ + K+ + A + + S
Sbjct: 64 FEVFKAFLSNIVVKLIVLALSWAFLHHFCAGIRHLLMDVNHDAVSKEGGKRTAVVVFVVS 123
Query: 116 ILTVLIVWI 124
I + + +
Sbjct: 124 IALTIAMAL 132
>gi|260597120|ref|YP_003209691.1| succinate dehydrogenase cytochrome b556 subunit [Cronobacter
turicensis z3032]
gi|260216297|emb|CBA29263.1| Succinate dehydrogenase cytochrome b556 subunit [Cronobacter
turicensis z3032]
Length = 129
Score = 99.7 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ + RP++ L R T SI+HR++G + ++ ++++ + + +
Sbjct: 2 IKKVNKQRPVNLDLTTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSLSSQEGFLTA 61
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-----KIATQMAKINIIAS 115
MD + ++ A+ +H++GGIR+++ D + + A I ++ S
Sbjct: 62 SDIMDSFFVKFIMWGILTALAYHVVGGIRHMLMDFGYLEETFAAGQRSAKFAFIITVVLS 121
Query: 116 ILTVLIVW 123
IL ++VW
Sbjct: 122 ILAGVLVW 129
>gi|149926165|ref|ZP_01914427.1| succinate dehydrogenase cytochrome B subunit [Limnobacter sp.
MED105]
gi|149824983|gb|EDM84195.1| succinate dehydrogenase cytochrome B subunit [Limnobacter sp.
MED105]
Length = 137
Score = 99.7 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 65/129 (50%), Gaps = 6/129 (4%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFF-CIANGEH 55
+++ RP+ ++ + YRL +SI+HR++G+V++L PV++ F E
Sbjct: 3 NTVAKKRPVYRNIHVTQILKYRLPLAGKLSILHRVSGAVLFLALPVILLPLFDKSITSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
T ++ + + ++ L W+ +HH GIRYL+ D+ + +K A++ A I S
Sbjct: 63 TFLEMQSLVSSPLVKIVLLGLIWSYLHHFAAGIRYLVLDMHVGTEKYAASKSAGIVFAVS 122
Query: 116 ILTVLIVWI 124
+ + +
Sbjct: 123 LSLTALFGL 131
>gi|290474115|ref|YP_003466992.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Xenorhabdus bovienii SS-2004]
gi|289173425|emb|CBJ80202.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Xenorhabdus bovienii SS-2004]
Length = 129
Score = 99.7 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ L+ + SI+HRI+G + ++ ++++ + +
Sbjct: 5 VKKQRPVNLDLRTINQPVSAITSILHRISGVITFIAVGILLWLLGMSLSSQEGFLQASEI 64
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASILTVLIV 122
M G + L+ A+ +H+ GGIR+++ D + + AK+ I+ +++ ++
Sbjct: 65 MTGFFAKFILWGILTALAYHICGGIRHVLMDFGFLEENLATGSASAKVAIVIAVILSILA 124
Query: 123 WII 125
++
Sbjct: 125 GVL 127
>gi|170108186|ref|XP_001885302.1| succinate dehydrogenase cytochrome b560 subunit [Laccaria bicolor
S238N-H82]
gi|164639778|gb|EDR04047.1| succinate dehydrogenase cytochrome b560 subunit [Laccaria bicolor
S238N-H82]
Length = 181
Score = 99.4 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 2/128 (1%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ + RP SPH IY+ T SI +R+TG+ + + + +L +
Sbjct: 54 LDKQRLRRPSSPHFTIYQPQLTWIASIANRVTGAGLSVLLYGFSIAYLVAPGTFDSLHVV 113
Query: 61 RCYMDGS--VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
V + H + G+R+L WD+ + K + A+ ++
Sbjct: 114 EFVAGLPEVVKYAGKAILAAPFAFHSINGLRHLSWDMGKFMTVKACYTTGYAVLGATAVS 173
Query: 119 VLIVWIIK 126
+++ ++K
Sbjct: 174 TVVLTLMK 181
>gi|156934786|ref|YP_001438702.1| hypothetical protein ESA_02626 [Cronobacter sakazakii ATCC BAA-894]
gi|156533040|gb|ABU77866.1| hypothetical protein ESA_02626 [Cronobacter sakazakii ATCC BAA-894]
Length = 129
Score = 99.4 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ + RP++ L R T SI+HR++G + ++ ++++ + + +
Sbjct: 2 IKKVNKQRPVNLDLTTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSLSSQEGFLTA 61
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-----KIATQMAKINIIAS 115
MD + L+ A+ +H++GG+R+++ D + + A I ++ S
Sbjct: 62 SNIMDSFFVKFILWGILTALAYHVVGGVRHMLMDFGYLEETFAAGQRSAKFAFIITVVLS 121
Query: 116 ILTVLIVW 123
IL ++VW
Sbjct: 122 ILAGVLVW 129
>gi|262186706|ref|YP_003275965.1| succinate dehydrogenase subunit 3 [Pleurozia purpurea]
gi|237780703|gb|ACR19349.1| succinate dehydrogenase subunit 3 [Pleurozia purpurea]
Length = 137
Score = 99.4 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 5/123 (4%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K NRPLSPHL IY+ T SI HRI+G+ + +F F + +
Sbjct: 1 MKINRPLSPHLTIYKPQLTSTFSIFHRISGAFLATMVLFSIFSFKIGDLSLTFYHFYQYF 60
Query: 64 M-----DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
V + A+ +HM G+R+L+WD L L+ I + +
Sbjct: 61 FLLTFYLNWVIISLVNFTLLALCYHMSNGVRHLLWDSGLFLELSKVYTSGIIMLFCAAFL 120
Query: 119 VLI 121
L
Sbjct: 121 ALF 123
>gi|281206854|gb|EFA81038.1| succinate dehydrogenase [Polysphondylium pallidum PN500]
Length = 205
Score = 99.4 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RP+SPHL IY+L +S+ HR TG + +G + A+ L
Sbjct: 81 ERPISPHLTIYKLPMPAILSVTHRATGIALGVGLATLAGLSVFGAHDVPYYIELFKQSYP 140
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMAKINIIASILTVLIV 122
S+ F + + H GIR++ WD ++ K A I + AS+ LIV
Sbjct: 141 SLVYPARFCVAFPITFHAFAGIRHIYWDTFLKGINTKPAEFTGMIILAASLGVSLIV 197
>gi|309778645|ref|ZP_07673422.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia sp.
5_7_47FAA]
gi|308922560|gb|EFP68180.1| succinate dehydrogenase, cytochrome b556 subunit [Ralstonia sp.
5_7_47FAA]
Length = 136
Score = 99.4 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 56/106 (52%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YRL VSI+HR +G++++L P V++ F E + + + +V +
Sbjct: 23 YRLPWAGKVSILHRASGALMFLLLPFVLYLFEQSLTSEISFAKFTALLSNGFAKVVVLAL 82
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
WA +HH GIRYLI D+ + +DK A++ A +I S+L ++
Sbjct: 83 IWAYLHHFCAGIRYLILDLHIGIDKTSASKSAVSVLIVSLLLTVVF 128
>gi|307579372|gb|ADN63341.1| succinate dehydrogenase membrane anchor subunit [Xylella fastidiosa
subsp. fastidiosa GB514]
Length = 113
Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 43/103 (41%)
Query: 21 PTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAV 80
M SI+HR TG + LG V+ + G R ++ + L ++TW
Sbjct: 1 MQMVTSILHRATGVFLSLGVLVIAAGLLALMFGPEPWDYFRSCLNLWYGQCFLLVWTWCF 60
Query: 81 IHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+H+ GIR++ D + + +++ SI+ VW
Sbjct: 61 GYHLCNGIRHIAQDFGCGFAISSFLRSSWASVLGSIVITAGVW 103
>gi|242238586|ref|YP_002986767.1| succinate dehydrogenase, cytochrome b556 subunit [Dickeya dadantii
Ech703]
gi|242130643|gb|ACS84945.1| succinate dehydrogenase, cytochrome b556 subunit [Dickeya dadantii
Ech703]
Length = 129
Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
S+K RP++ LQ R T SI+HR++G + ++ ++++ + +
Sbjct: 3 KSVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSLSSQEGFVHAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-----KIATQMAKINIIASI 116
M + + ++ A+ +H++GG+R+L+ D + A I ++ S+
Sbjct: 63 AIMGSFIVKFIVWGILTALSYHIVGGLRHLLMDFGYIEETFAAGSSSAKISFIITVVLSL 122
Query: 117 LTVLIVW 123
L ++VW
Sbjct: 123 LAGVLVW 129
>gi|188576491|ref|YP_001913420.1| succinate dehydrogenase, cytochrome b556 subunit [Xanthomonas
oryzae pv. oryzae PXO99A]
gi|188520943|gb|ACD58888.1| succinate dehydrogenase, cytochrome b556 subunit [Xanthomonas
oryzae pv. oryzae PXO99A]
Length = 118
Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 49/108 (45%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YR M SI++R TG V+ +G V+ + G + R + +V LF +
Sbjct: 2 YRWQIQMVTSILNRATGIVLTVGALVIAAALLTLMLGPDHWNCFRDHAASWYGQVFLFGW 61
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
TW+ H+ GG+R+++ D + M ++++ S + VW
Sbjct: 62 TWSFAFHLFGGLRHMLQDFGQGYAVRSFVGMGWLSVLLSFVLTGAVWA 109
>gi|254419838|ref|ZP_05033562.1| succinate dehydrogenase, cytochrome b556 subunit [Brevundimonas sp.
BAL3]
gi|196186015|gb|EDX80991.1| succinate dehydrogenase, cytochrome b556 subunit [Brevundimonas sp.
BAL3]
Length = 154
Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 55/121 (45%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSV 68
PLSPH+ I+R TM SI+ R T +G +VV W +A G ++ +
Sbjct: 29 PLSPHIGIWRWHVTMAASILFRATIIAATVGALIVVAWLGALAFGPDAYAAALALAGSPL 88
Query: 69 FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDI 128
F T + +L G R+ I D L K +T +++I + A + ++ W++
Sbjct: 89 GLFVSFGLTVVLFSFILNGTRHTINDTGNGLTIKSSTILSRIAVWAPVPLAILFWVVLFA 148
Query: 129 V 129
V
Sbjct: 149 V 149
>gi|15642091|ref|NP_231723.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121586919|ref|ZP_01676699.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
2740-80]
gi|121727359|ref|ZP_01680498.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
V52]
gi|147673409|ref|YP_001217616.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio cholerae O395]
gi|153818384|ref|ZP_01971051.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
NCTC 8457]
gi|153821711|ref|ZP_01974378.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
B33]
gi|227082217|ref|YP_002810768.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
M66-2]
gi|229507820|ref|ZP_04397325.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholerae
BX 330286]
gi|229511943|ref|ZP_04401422.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholerae
B33]
gi|229519079|ref|ZP_04408522.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholerae
RC9]
gi|229607365|ref|YP_002878013.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio cholerae MJ-1236]
gi|254849177|ref|ZP_05238527.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio cholerae MO10]
gi|298497883|ref|ZP_07007690.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
MAK 757]
gi|9656640|gb|AAF95237.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
O1 biovar El Tor str. N16961]
gi|121548855|gb|EAX58898.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
2740-80]
gi|121630251|gb|EAX62649.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
V52]
gi|126511074|gb|EAZ73668.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
NCTC 8457]
gi|126520809|gb|EAZ78032.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
B33]
gi|146315292|gb|ABQ19831.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
O395]
gi|227010105|gb|ACP06317.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
M66-2]
gi|227013988|gb|ACP10198.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
O395]
gi|229343768|gb|EEO08743.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholerae
RC9]
gi|229351908|gb|EEO16849.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholerae
B33]
gi|229355325|gb|EEO20246.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholerae
BX 330286]
gi|229370020|gb|ACQ60443.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholerae
MJ-1236]
gi|254844882|gb|EET23296.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio cholerae MO10]
gi|297542216|gb|EFH78266.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio cholerae
MAK 757]
Length = 130
Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ +RP++ LQ + SI+HR++G + ++ ++++ + +
Sbjct: 8 RKSRPVNLDLQTISFPISAIASILHRVSGVITFVAVGILLWLLSLSLSSPVGFMEASNIV 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIA----TQMAKINIIASILTVL 120
D + L+ A+ +H+ GGIR+L+ D+ + + ++ S+L +
Sbjct: 68 DSFFVKFVLWGILTALAYHIAGGIRHLLMDLGHFEELESGAASAKVAFAATVVLSLLAGV 127
Query: 121 IVW 123
+VW
Sbjct: 128 LVW 130
>gi|325982599|ref|YP_004295001.1| succinate dehydrogenase, cytochrome b556 subunit [Nitrosomonas sp.
AL212]
gi|325532118|gb|ADZ26839.1| succinate dehydrogenase, cytochrome b556 subunit [Nitrosomonas sp.
AL212]
Length = 129
Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYL-GTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RP +L R VSI+HRI+G +++ G P+++ + L+ Y+
Sbjct: 7 HKRPKYLNLLKIRQPIPAVVSILHRISGVLLFFPGIPLLLCGLQLLLESPQGFEILQGYI 66
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ + ++ L L W +HH+ GIR+L+ D+ + + + A +K+ +IA + +
Sbjct: 67 NNPMIKLMLLLPLWFFLHHLCAGIRHLLLDMQVGIALEQARTGSKLVLIAGFALTTLTGL 126
Query: 125 I 125
+
Sbjct: 127 V 127
>gi|22550363|ref|NP_689350.1| succinate:cytochrome c oxidoreductase subunit 3 [Chaetosphaeridium
globosum]
gi|22417029|gb|AAM96628.1|AF494279_33 succinate:cytochrome c oxidoreductase subunit 3 [Chaetosphaeridium
globosum]
Length = 129
Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K NRPLSPHL +Y+ T +SI HRI+G+ + S + +
Sbjct: 1 MKINRPLSPHLTVYKPQLTSTLSIFHRISGAFLAFFVLSFALSMPICQINLSFYSFYKIW 60
Query: 64 MD-----GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
VF L L ++V +HM GIR+L+WD L LD +I ++
Sbjct: 61 FYLCHDKLWVFLTVLNLAFFSVCYHMSNGIRHLLWDYGLFLDLSKVYFSGVFMLIVAVSL 120
Query: 119 VLI 121
V++
Sbjct: 121 VIL 123
>gi|195111348|ref|XP_002000241.1| GI22631 [Drosophila mojavensis]
gi|193916835|gb|EDW15702.1| GI22631 [Drosophila mojavensis]
Length = 229
Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
++K R LSPHL IYR T +SI R +G+ + L ++ + C + +
Sbjct: 48 KNMKLGRALSPHLTIYRKQLTSVMSIFLRASGATLGLAVWIIGLTALLCKLDINAMAEKV 107
Query: 61 RCY-MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ G F F+ +H++ G R+LIW +++ L K + I S
Sbjct: 108 EALNLGGVTFTALKFILMVPFSYHVMAGTRHLIWYLNMFLTKPEIYTTGYVAIAMS 163
>gi|254994783|ref|ZP_05276973.1| succinate dehydrogenase cytochrome b556 subunit (sdhC) [Anaplasma
marginale str. Mississippi]
gi|255002908|ref|ZP_05277872.1| succinate dehydrogenase cytochrome b556 subunit (sdhC) [Anaplasma
marginale str. Puerto Rico]
gi|255004036|ref|ZP_05278837.1| succinate dehydrogenase cytochrome b556 subunit (sdhC) [Anaplasma
marginale str. Virginia]
Length = 120
Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 10 LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC-YMDGSV 68
+SPHLQ+Y+L +SI HR +G ++ G V+ + F + ++ + +
Sbjct: 1 MSPHLQVYKLPVAALLSITHRASGLFLFFGLSVLSWLFVLLRCAPDCIAPFLANPLGFFL 60
Query: 69 FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA----SILTVLIVWI 124
++ F A +H G+R+L+WD + LDK T + ++ S++ VW+
Sbjct: 61 VKLLSFSCCVAFCYHYFNGVRHLLWDCGVGLDKTAVTASSAFVLLLTAAFSVVAFFFVWL 120
>gi|58616911|ref|YP_196110.1| succinate dehydrogenase cytochrome B-556 subunit [Ehrlichia
ruminantium str. Gardel]
gi|58416523|emb|CAI27636.1| Succinate dehydrogenase cytochrome B-556 subunit [Ehrlichia
ruminantium str. Gardel]
Length = 132
Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RPLSPHLQ+Y+L +SI HR TG ++++G ++ + F A + +
Sbjct: 1 MSKVRPLSPHLQVYKLPMAAVLSITHRFTGILLFIGLLLLAWTFIACAIYPELIHKAYLF 60
Query: 64 MDGSV-----FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
S F++ +F+ + +H L G+R+++WD L L K + ++ S+L
Sbjct: 61 FSTSYFALYGFKLFIFVCLNVLCYHYLNGVRHILWDFGLGLTKSAVKTSGIVVLVLSLLF 120
Query: 119 VLIVW 123
IV+
Sbjct: 121 SFIVY 125
>gi|226941338|ref|YP_002796412.1| SdhC [Laribacter hongkongensis HLHK9]
gi|226716265|gb|ACO75403.1| SdhC [Laribacter hongkongensis HLHK9]
Length = 124
Score = 98.6 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 58/122 (47%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
++ RP L L VSI+HRI+G ++L P++++ + E + R
Sbjct: 1 MQKKRPKHLDLGKISLPIMAKVSILHRISGVALFLALPLLIYLLQGSLSSEADFEAYRAV 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + ++ L WA +HH GIR+L++D+ + A AK ++ SI +++
Sbjct: 61 VAFPLMKLILLGLLWAFLHHFCAGIRFLMFDMHKGQSLEAARASAKAVLVVSIALTVVIG 120
Query: 124 II 125
I
Sbjct: 121 GI 122
>gi|294340933|emb|CAZ89328.1| putative Succinate dehydrogenase cytochrome b556 subunit
(Cytochrome b-556) (sdhC) [Thiomonas sp. 3As]
Length = 137
Score = 98.6 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 8 RPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
RP+ ++ I YRL VSI+HRI+G+V++L P+V++ F + +++
Sbjct: 10 RPVYRNIHISQIVGYRLPLAGLVSILHRISGAVMFLALPLVLWAFDDSLRSADSHAAITQ 69
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
++ ++ L WA++HH++ G+R+L D + K Q+A I S+ +
Sbjct: 70 FLSHWFVKLILLGLFWALMHHLVAGVRHLWMDAFHAVSKAQGLQLALITFAVSLGLTALF 129
Query: 123 WI 124
+
Sbjct: 130 GL 131
>gi|11467108|ref|NP_054409.1| succinate dehydrogenase subunit 3 [Marchantia polymorpha]
gi|543911|sp|P35721|C560_MARPO RecName: Full=Succinate dehydrogenase cytochrome b560 subunit;
AltName: Full=Succinate dehydrogenase, subunit III
gi|786193|gb|AAC09406.1| ORF137 [Marchantia polymorpha]
Length = 137
Score = 98.6 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 5/123 (4%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFW-----FFCIANGEHTLS 58
+K NRPLSPHL IY+ T SI HRI+G+ + + + +
Sbjct: 1 MKINRPLSPHLTIYKPQLTSTFSIFHRISGAFLATMVLFSILFFKIGDLSLTFYHFYQYF 60
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
+ + A+ +HM G+R+L+WD+ L+ I + +
Sbjct: 61 FFLTFYLNWFIISLVNFTLLALCYHMSNGVRHLLWDLGFFLELSKVYTSGIIMLFCAAFL 120
Query: 119 VLI 121
L+
Sbjct: 121 ALL 123
>gi|297537886|ref|YP_003673655.1| succinate dehydrogenase, cytochrome b556 subunit [Methylotenera sp.
301]
gi|297257233|gb|ADI29078.1| succinate dehydrogenase, cytochrome b556 subunit [Methylotenera sp.
301]
Length = 141
Score = 98.6 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 53/117 (45%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RP + +L RL VSI+HR TG V++L PV++ N ++ +
Sbjct: 21 RPKNLNLFTIRLPINALVSILHRATGCVLFLILPVILLLLQFSLNSAEHYEAVIAILHSP 80
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ ++ L WA HH GIR+L DV A +K+ ++ L L++ +
Sbjct: 81 LIKIMLLGLAWAFFHHFFAGIRHLAMDVHWMTTLMKARYTSKVVLVLGALATLVLAV 137
>gi|58578853|ref|YP_197065.1| succinate dehydrogenase cytochrome B-556 subunit [Ehrlichia
ruminantium str. Welgevonden]
gi|58417479|emb|CAI26683.1| Succinate dehydrogenase cytochrome B-556 subunit [Ehrlichia
ruminantium str. Welgevonden]
Length = 143
Score = 98.6 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 5/125 (4%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RPLSPHLQ+Y+L + +SI HR TG ++++G ++ + F A + +
Sbjct: 12 MSKVRPLSPHLQVYKLPMSAVLSITHRFTGILLFIGLLLLAWTFIACAIYPELIHKAYLF 71
Query: 64 MDGSV-----FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
S F++ +F+ + +H L G+R+++WD L L K + ++ S+L
Sbjct: 72 FSTSYFALYGFKLFIFVCLNVLCYHYLNGVRHILWDFGLGLTKSAVKISGIVVLVLSLLF 131
Query: 119 VLIVW 123
IV+
Sbjct: 132 SFIVY 136
>gi|114332434|ref|YP_748656.1| succinate dehydrogenase, cytochrome b subunit [Nitrosomonas
eutropha C91]
gi|114309448|gb|ABI60691.1| succinate dehydrogenase subunit C [Nitrosomonas eutropha C91]
Length = 130
Score = 98.2 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYL-GTPVVVFWFFCIANGEHTLSSLRCYM 64
RP +L R VSI+HRI+G +++ G P+ + + + + L+ +
Sbjct: 8 RRRPKYLNLFKIREPLPAIVSILHRISGVLLFFPGIPLFLCGLQMMLESPESFARLQSIL 67
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ + L TW +HH+ GIR+L D+ L + A +K+ +I + ++ I
Sbjct: 68 IHPLSRLFLLFATWFFLHHLFAGIRHLGLDMHYGLQLQHARLSSKLVLIFGAILTVLAGI 127
>gi|300722382|ref|YP_003711668.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Xenorhabdus nematophila ATCC 19061]
gi|297628885|emb|CBJ89468.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Xenorhabdus nematophila ATCC 19061]
Length = 129
Score = 98.2 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ L+ + SI+HRI+G + ++ ++++ + +
Sbjct: 5 VKKQRPVNLDLRTINQPVSAIASILHRISGVITFIAVGILLWLLGMSLSSQEGFLQSSEI 64
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASILTVLIV 122
M G + L+ A+ +H+ GGIR+++ D + + AK+ I+ +++ ++
Sbjct: 65 MTGFFAKFILWGILTALAYHICGGIRHVLMDFGFLEENLATGSASAKVAIVIAVILSILA 124
Query: 123 WII 125
++
Sbjct: 125 GVL 127
>gi|270157997|ref|ZP_06186654.1| succinate dehydrogenase cytochrome b556 subunit [Legionella
longbeachae D-4968]
gi|289163737|ref|YP_003453875.1| succinate dehydrogenase, cytochrome b556 subunit [Legionella
longbeachae NSW150]
gi|269990022|gb|EEZ96276.1| succinate dehydrogenase cytochrome b556 subunit [Legionella
longbeachae D-4968]
gi|288856910|emb|CBJ10724.1| succinate dehydrogenase, cytochrome b556 subunit [Legionella
longbeachae NSW150]
Length = 124
Score = 98.2 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 63/121 (52%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RP++ L + P SI+HRI+G V++L P+++F + E ++
Sbjct: 1 MNKKRPVNLDLVSLKYPPMAIASILHRISGVVLFLLLPIMLFIWGQSVQSEEAFLHVKNL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ S +++ ++ + A+I+H+L GIR+L+ D+ + A + I+ +++ + +
Sbjct: 61 LSQSCYKMVVWAFGSAMIYHLLAGIRHLLMDIGVGEHLNAGRNSAILVIVLTVILAIFLG 120
Query: 124 I 124
I
Sbjct: 121 I 121
>gi|29420825|dbj|BAC66634.1| succinate dehydrogenase cytochrome b560 subunit [Coprinopsis
cinerea]
Length = 179
Score = 98.2 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 2/124 (1%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT-PVVVFWFFCIANGEHT-LS 58
++ + RP SPH IY+ T SI R+TG+ + + + + + +
Sbjct: 52 LNKQRLKRPSSPHFTIYQPQLTWLGSIAKRVTGAGLSVLLYGFSIAYLIAPGTFDSAHVV 111
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
+ V + +H G+R+L WD L K A + + ++
Sbjct: 112 EFVAGLPDGVKYAGKAILAAPFSYHAWNGLRHLAWDAGKFLSVKGAYATGYAVLGLTGVS 171
Query: 119 VLIV 122
+++
Sbjct: 172 TVVL 175
>gi|57238921|ref|YP_180057.1| succinate dehydrogenase cytochrome B-556 subunit [Ehrlichia
ruminantium str. Welgevonden]
gi|57161000|emb|CAH57906.1| putative succinate dehydrogenase cytochrome b-556 subunit
[Ehrlichia ruminantium str. Welgevonden]
Length = 132
Score = 97.8 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RPLSPHLQ+Y+L +SI HR TG ++++G ++ + F A + +
Sbjct: 1 MSKVRPLSPHLQVYKLPMAAVLSITHRFTGILLFIGLLLLAWTFIACAIYPELIHKAYLF 60
Query: 64 MDGSV-----FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
S F++ +F+ + +H L G+R+++WD L L K + ++ S+L
Sbjct: 61 FSTSYFALYGFKLFIFVCLNVLCYHYLNGVRHILWDFGLGLTKSAVKISGIVVLVLSLLF 120
Query: 119 VLIVW 123
IV+
Sbjct: 121 SFIVY 125
>gi|325525107|gb|EGD02998.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
TJI49]
Length = 138
Score = 97.8 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 3 SIKNNRPLSPHLQ------IYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+++ RP ++ YR+ +SI+HR++G++++L P ++F F E +
Sbjct: 4 AVRKPRPEYRNIGFGDITMKYRMPLAAKLSILHRVSGALLFLFLPFLLFLFDQSLTSELS 63
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIAS 115
+ ++ V ++ + +WA HH GIR+L+ DV+ + K+ + A + + S
Sbjct: 64 FEVFKAFLSNIVVKLIVLALSWAFFHHFCAGIRHLLMDVNHDAVSKESGKRTAVVVFVVS 123
Query: 116 ILTVLIVWI 124
I + + +
Sbjct: 124 IALTIAMAL 132
>gi|260220786|emb|CBA28698.1| hypothetical protein Csp_A08450 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 163
Score = 97.8 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 13 HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR-------CYMD 65
L YRL P +VSI+HRI+G+++++ P +++ F + E + + ++
Sbjct: 39 DLPTYRLPPAGWVSILHRISGAIMFILMPFIIWMFDTSVSSEISFAKFTSVFSVGVGFIP 98
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKI 110
G ++ WA +HH + G+R+L D++ + K+ A
Sbjct: 99 GWFVKLVALAIIWAYLHHFIAGMRHLWMDINHAVSKEFGRSSAIF 143
>gi|121595114|ref|YP_987010.1| succinate dehydrogenase subunit C [Acidovorax sp. JS42]
gi|120607194|gb|ABM42934.1| succinate dehydrogenase subunit C [Acidovorax sp. JS42]
Length = 144
Score = 97.8 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 14/136 (10%)
Query: 1 MSSIKNNRPLSPHLQI------YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE 54
M+ + RP ++ I YRL +VSI+HR +G +++L P V++ F + E
Sbjct: 1 MTELAKKRPEYRNINIFNDVRTYRLPAAGWVSILHRASGMIMFLLLPFVLWMFDTSVSSE 60
Query: 55 HTLSSLR-------CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQ 106
+ ++ G ++ WA +HH + G+R+L DVS + K+
Sbjct: 61 ISFGRFTSAFTAGLGFVPGWFVKLVALALIWAYLHHFIAGLRHLWMDVSHEAVSKEFGKS 120
Query: 107 MAKINIIASILTVLIV 122
A + ++ SI L++
Sbjct: 121 SAIVTLVLSIGLTLVL 136
>gi|194743916|ref|XP_001954444.1| GF18264 [Drosophila ananassae]
gi|190627481|gb|EDV43005.1| GF18264 [Drosophila ananassae]
Length = 281
Score = 97.8 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT-PVVVFWFFCIANGEHTLSSLR 61
++ R LSPHL IY+L T +SI RI+G V+ + + + C N E L+ ++
Sbjct: 100 NMMRGRELSPHLSIYKLQLTSGLSICLRISGFVLGVFVWALGISGLICQGNMEEFLTKVQ 159
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
++ + + +HM+ G R+LIW ++L + I+ +I+ +
Sbjct: 160 DCDCDTLRTLTKVMVAIPFAYHMVAGTRHLIWYLNLFTSIPEVYATGYVAILLAIVVAV 218
>gi|78062999|ref|YP_372907.1| succinate dehydrogenase subunit C [Burkholderia sp. 383]
gi|77970884|gb|ABB12263.1| succinate dehydrogenase subunit C [Burkholderia sp. 383]
Length = 138
Score = 97.8 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 3 SIKNNRPLSPHLQ------IYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+++ RP ++ YR+ +SI+HR++G++++L P ++F F E +
Sbjct: 4 AVRKPRPEYRNIGFGDITMKYRMPLAAILSILHRVSGALLFLFLPFLLFLFDQSLTSELS 63
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIAS 115
+ ++ + ++ + +WA HH GIR+L+ DV+ + K+ + A + + S
Sbjct: 64 FEGFKQFLSNIIVKLIVLALSWAFFHHFCAGIRHLLMDVNHDAVTKEGGKRTAVVVFVVS 123
Query: 116 ILTVLIVWI 124
I + + +
Sbjct: 124 IALTIAMAL 132
>gi|149040640|gb|EDL94597.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, isoform CRA_d [Rattus norvegicus]
Length = 140
Score = 97.4 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 27/124 (21%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+ +NRP+SPHL IYR M +S+ HR +G + G +
Sbjct: 44 KNTSSNRPVSPHLTIYRWSLPMAMSVCHRGSGIAMSGGVSLFGLS--------------- 88
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
F+ + +++H L G+R+L+WD+ L ++ ++L+
Sbjct: 89 ------------FVLVFPLMYHSLNGVRHLMWDLGKGLSISQVQLSGVTVLVLAVLSSAG 136
Query: 122 VWII 125
+ I
Sbjct: 137 LAAI 140
>gi|206562822|ref|YP_002233585.1| putative succinate dehydrogenase cytochrome b556 subunit
[Burkholderia cenocepacia J2315]
gi|198038862|emb|CAR54824.1| putative succinate dehydrogenase cytochrome b556 subunit
[Burkholderia cenocepacia J2315]
Length = 138
Score = 97.4 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 3 SIKNNRPLSPHLQ------IYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+++ RP ++ YR+ +SI+HR++G++++L P ++F F E +
Sbjct: 4 AVRKPRPEYRNIGFGDITMKYRMPLAAILSILHRVSGALLFLFLPFLLFLFDQSLTSELS 63
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIAS 115
+ ++ V ++ + +WA HH GIR+L+ DV+ + K+ + A + + S
Sbjct: 64 FEVFKAFLSNIVVKLIVLALSWAFFHHFCAGIRHLLMDVNHDAVTKEGGKRTAVVVFVVS 123
Query: 116 ILTVLIVWI 124
I + + +
Sbjct: 124 IALTIAMAL 132
>gi|161521191|ref|YP_001584618.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
multivorans ATCC 17616]
gi|189352633|ref|YP_001948260.1| succinate dehydrogenase cytochrome b-556 subunit [Burkholderia
multivorans ATCC 17616]
gi|221196968|ref|ZP_03570015.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
multivorans CGD2M]
gi|221212430|ref|ZP_03585407.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
multivorans CGD1]
gi|160345241|gb|ABX18326.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
multivorans ATCC 17616]
gi|189336655|dbj|BAG45724.1| succinate dehydrogenase cytochrome b-556 subunit [Burkholderia
multivorans ATCC 17616]
gi|221167529|gb|EED99998.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
multivorans CGD1]
gi|221183522|gb|EEE15922.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
multivorans CGD2M]
Length = 138
Score = 97.4 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 65/129 (50%), Gaps = 7/129 (5%)
Query: 3 SIKNNRPLSPHLQ------IYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+++ RP ++ YRL +SI+HR++G++++L P ++F F E +
Sbjct: 4 AVRKPRPEYRNIGFGDITMNYRLPLAAKLSILHRVSGALLFLFLPFLLFLFDQSLTSELS 63
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIAS 115
+ ++ V ++ + + +WA HH GIR+L+ DV+ + K+ + A + + S
Sbjct: 64 FEVFKAFLSNIVVKLIVLVLSWAFFHHFCAGIRHLLMDVNHDAVSKEGGKRTAVVVFVVS 123
Query: 116 ILTVLIVWI 124
I + + +
Sbjct: 124 IALTIAMAL 132
>gi|308497614|ref|XP_003110994.1| CRE-MEV-1 protein [Caenorhabditis remanei]
gi|308242874|gb|EFO86826.1| CRE-MEV-1 protein [Caenorhabditis remanei]
Length = 184
Score = 97.4 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 9/128 (7%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M NRP++PHL IY+ T +S HRI+G V+ V F + ++
Sbjct: 45 MKQRAKNRPIAPHLTIYQPQLTWMLSGFHRISGCVMAGTLLVGGIGFAVL---PFDFTTF 101
Query: 61 RCYMDGS-----VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIA 114
Y+ G V V ++ + +I H L GIR+L +D++ +D + +
Sbjct: 102 VEYIRGWNLPCAVTAVFKYIIAFPIIFHTLNGIRFLGFDLAKGVDNIGQVYKSGWLVFGV 161
Query: 115 SILTVLIV 122
S + L +
Sbjct: 162 SAVIALAI 169
>gi|241765615|ref|ZP_04763570.1| succinate dehydrogenase, cytochrome b556 subunit [Acidovorax
delafieldii 2AN]
gi|241364553|gb|EER59619.1| succinate dehydrogenase, cytochrome b556 subunit [Acidovorax
delafieldii 2AN]
Length = 144
Score = 97.4 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 14/136 (10%)
Query: 1 MSSIKNNRPLSP------HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE 54
M+ + RP L YR+ P +VSI+HR +G+V++L P V++ F + E
Sbjct: 1 MTELAKKRPEFRNINAFKDLTTYRMTPAAWVSILHRASGAVMFLLLPFVLWMFDTSVSSE 60
Query: 55 HTLSSLRC-------YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQ 106
+ + + ++ G ++ W +HHM+ G+R+L DVS ++K+
Sbjct: 61 ISFGTFKAAFNAGLGFLPGWFIKLVALALIWGYLHHMIAGMRHLWMDVSHEAVNKQFGKT 120
Query: 107 MAKINIIASILTVLIV 122
A + + SI L++
Sbjct: 121 SAVVTLTISIALTLVL 136
>gi|119503172|ref|ZP_01625256.1| succinate dehydrogenase (C subunit) [marine gamma proteobacterium
HTCC2080]
gi|119460818|gb|EAW41909.1| succinate dehydrogenase (C subunit) [marine gamma proteobacterium
HTCC2080]
Length = 129
Score = 97.4 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 60/121 (49%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
K+ RP++ L +L T +VSI HR++G ++L + ++V+ E +S+ +
Sbjct: 7 KDKRPVNLDLGSMQLPITAYVSITHRLSGVFLFLVSGLMVWALDTSLRSEEGFNSVASTL 66
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ + L+L A+ +H L G++++I D + + A+I I +I + +
Sbjct: 67 TMPLSKAILWLIASALSYHALSGVKHIIMDFGIGETMQGGVTGARIVIALAICLAVFWGV 126
Query: 125 I 125
+
Sbjct: 127 V 127
>gi|332528254|ref|ZP_08404259.1| succinate dehydrogenase subunit C [Hylemonella gracilis ATCC 19624]
gi|332042274|gb|EGI78595.1| succinate dehydrogenase subunit C [Hylemonella gracilis ATCC 19624]
Length = 147
Score = 97.4 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 13 HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC-------YMD 65
L YRL +VSI+HR++G++++L P V++ F E + ++
Sbjct: 23 DLPTYRLPAAGWVSILHRVSGALMFLLLPFVIWLFDTATTSELSYERFAAAFSAGIGFVP 82
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
G ++ W +HH++ G+R+L D + + K+ A + ++ SI L++
Sbjct: 83 GWFVKLATLGLIWGYLHHIIAGLRHLWMDATHAVTKEFGRNSAVVTLVLSIGLTLVL 139
>gi|53716128|ref|YP_106308.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
mallei ATCC 23344]
gi|53722741|ref|YP_111726.1| succinate dehydrogenase cytochrome b-556 subunit [Burkholderia
pseudomallei K96243]
gi|76817631|ref|YP_335952.1| succinate dehydrogenase cytochromesubunit B [Burkholderia
pseudomallei 1710b]
gi|121597824|ref|YP_991215.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
mallei SAVP1]
gi|124382334|ref|YP_001025626.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
mallei NCTC 10229]
gi|126444914|ref|YP_001063466.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei 668]
gi|126456729|ref|YP_001076367.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei 1106a]
gi|134278489|ref|ZP_01765203.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei 305]
gi|167724524|ref|ZP_02407760.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei DM98]
gi|167743482|ref|ZP_02416256.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei 14]
gi|167820668|ref|ZP_02452348.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei 91]
gi|167829028|ref|ZP_02460499.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei 9]
gi|167850504|ref|ZP_02476012.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei B7210]
gi|167899099|ref|ZP_02486500.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei 7894]
gi|167907444|ref|ZP_02494649.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei NCTC 13177]
gi|167915782|ref|ZP_02502873.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei 112]
gi|167923621|ref|ZP_02510712.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei BCC215]
gi|217422037|ref|ZP_03453540.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei 576]
gi|226195598|ref|ZP_03791185.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei Pakistan 9]
gi|242311050|ref|ZP_04810067.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei 1106b]
gi|52213155|emb|CAH39194.1| putative succinate dehydrogenase cytochrome b-556 subunit
[Burkholderia pseudomallei K96243]
gi|52422098|gb|AAU45668.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
mallei ATCC 23344]
gi|76582104|gb|ABA51578.1| succinate dehydrogenase cytochrome B subunit [Burkholderia
pseudomallei 1710b]
gi|121225622|gb|ABM49153.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
mallei SAVP1]
gi|126224405|gb|ABN87910.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei 668]
gi|126230497|gb|ABN93910.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei 1106a]
gi|134250273|gb|EBA50353.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei 305]
gi|217394268|gb|EEC34287.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei 576]
gi|225932083|gb|EEH28083.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei Pakistan 9]
gi|242134289|gb|EES20692.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei 1106b]
gi|261826751|gb|ABM99713.2| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
mallei NCTC 10229]
Length = 138
Score = 97.4 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Query: 2 SSIKNNRPLSPHLQ------IYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
+++ RP ++ YR+ VSI+HR++G++++L P +++ F E
Sbjct: 3 ETVRKPRPEYRNIGFGDITLKYRMPLAARVSILHRVSGALLFLFLPFLLYLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIA 114
+ + ++ + ++ + +WA + H GIR+L+ D++ + K+ + + +
Sbjct: 63 SFEVFKAFLSNIIVKLIVLALSWAFLFHFCAGIRHLMMDMNHDAVSKERGKKTSVVVFAV 122
Query: 115 SILTVLIVWI 124
S L + V +
Sbjct: 123 STLLTIAVAL 132
>gi|222111457|ref|YP_002553721.1| succinate dehydrogenase, cytochrome b556 subunit [Acidovorax ebreus
TPSY]
gi|221730901|gb|ACM33721.1| succinate dehydrogenase, cytochrome b556 subunit [Acidovorax ebreus
TPSY]
Length = 144
Score = 97.0 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 14/136 (10%)
Query: 1 MSSIKNNRPL------SPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE 54
M+ + RP L YR VS +HRI+G +++L P+V++ F + E
Sbjct: 1 MTELAKQRPEYRNIHAFRDLPSYRWPLAALVSGMHRISGMIMFLLLPLVIWMFDTSVSSE 60
Query: 55 HTLSSLR-------CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV-SLCLDKKIATQ 106
+ + G + ++ W +HH + G+R+L+ D+ + K+
Sbjct: 61 ISFGKFTSAFSSGLGFAPGWLIKLLTLGLIWGYLHHFIAGLRHLLMDMNHAAVTKEFGKS 120
Query: 107 MAKINIIASILTVLIV 122
A + ++AS I+
Sbjct: 121 SAAVTLVASFGLTAIL 136
>gi|328860072|gb|EGG09179.1| hypothetical protein MELLADRAFT_77220 [Melampsora larici-populina
98AG31]
Length = 186
Score = 97.0 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 5/130 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-----EH 55
++ + RP SPH IY T SI +R++GS + +G V + +
Sbjct: 57 LNQQRKLRPTSPHFTIYEPQLTWLSSIANRVSGSALSVGLYVFALSYMGLPAAGIPMDSE 116
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
TL L L H R+L WD+ ++ K + + A+
Sbjct: 117 TLVQLAASAPEWSKVSAKALVALPFTFHTFNSCRHLAWDMGYFMELKSSYAAGYAVMGAT 176
Query: 116 ILTVLIVWII 125
++ + + +I
Sbjct: 177 AVSTVGLALI 186
>gi|296136777|ref|YP_003644019.1| succinate dehydrogenase, cytochrome b556 subunit [Thiomonas
intermedia K12]
gi|295796899|gb|ADG31689.1| succinate dehydrogenase, cytochrome b556 subunit [Thiomonas
intermedia K12]
Length = 137
Score = 97.0 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 5/122 (4%)
Query: 8 RPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
RP+ ++ I YRL VSI+HRI+G+V++L P+V++ F + ++
Sbjct: 10 RPVYRNIHISQIVGYRLPLAGLVSILHRISGAVMFLALPLVLWAFDDSLRSADSHVAITQ 69
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
++ ++ L WA++HH++ G+R+L D + K Q+A I S+ +
Sbjct: 70 FLSHWFVKLILLGLFWALMHHLVAGVRHLWMDAFHAVSKAQGLQLALITFAVSLGLTALF 129
Query: 123 WI 124
+
Sbjct: 130 GL 131
>gi|167840400|ref|ZP_02467084.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
thailandensis MSMB43]
Length = 138
Score = 97.0 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Query: 2 SSIKNNRPLSPHLQ------IYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
+++ RP ++ YR+ VSI+HR++G++++L P +++ F E
Sbjct: 3 ETVRKPRPEYRNIGFGDITLKYRMPLAARVSILHRVSGALLFLFLPFLLYLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIA 114
+ + ++ + ++ + +WA + H GIR+L+ D++ + K+ + + +
Sbjct: 63 SFEVFKAFLSNIIVKLIVLALSWAFLFHFCAGIRHLMMDMNHDAVSKERGQKTSVVVFAV 122
Query: 115 SILTVLIVWI 124
S L + V +
Sbjct: 123 STLLTIAVAL 132
>gi|254253640|ref|ZP_04946957.1| Succinate dehydrogenase cytochrome b subunit [Burkholderia dolosa
AUO158]
gi|124898285|gb|EAY70128.1| Succinate dehydrogenase cytochrome b subunit [Burkholderia dolosa
AUO158]
Length = 138
Score = 96.7 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 65/129 (50%), Gaps = 7/129 (5%)
Query: 3 SIKNNRPLSPHLQ------IYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+++ RP ++ YRL +SI+HR++G++++L P ++F F E +
Sbjct: 4 AVRKPRPEFRNIGFGDITMKYRLPLAAKLSILHRVSGALLFLFLPFLLFLFDQSLTSELS 63
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIAS 115
+ ++ V ++ + + +WA HH GIR+L+ DV+ + K+ + A + + S
Sbjct: 64 FEVFKAFLSNIVVKLIVLVLSWAFFHHFCAGIRHLLMDVNHDAVTKEGGKRTAIVVFVVS 123
Query: 116 ILTVLIVWI 124
I + + +
Sbjct: 124 IALTIAMAL 132
>gi|294787718|ref|ZP_06752962.1| succinate dehydrogenase, cytochrome b556 subunit [Simonsiella
muelleri ATCC 29453]
gi|294484011|gb|EFG31694.1| succinate dehydrogenase, cytochrome b556 subunit [Simonsiella
muelleri ATCC 29453]
Length = 133
Score = 96.7 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 6 NNRPLSPHL-QIYR-LIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
RP+ + I + L VSI+HR TG ++L P ++ + + +
Sbjct: 10 KKRPVYLDMPTIIKHLPMPAIVSILHRATGVALFLLLPFLLALLSGSRSSGEDFEYYKAW 69
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
D ++ L+ WA IHH+ GIR+LI D + D + A + A+I +IA+ +T ++
Sbjct: 70 ADNWFIKLILWGVLWAFIHHLFAGIRFLIIDAHIGTDLQTARKSARIVLIAAAVTAFVLG 129
Query: 124 I 124
I
Sbjct: 130 I 130
>gi|295700755|ref|YP_003608648.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
CCGE1002]
gi|295439968|gb|ADG19137.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
CCGE1002]
Length = 138
Score = 96.7 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 2 SSIKNNRPLSPH------LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
++K RP + L YRL VSI+HR++G++++L P ++F F E
Sbjct: 3 EAVKKPRPEFRNIGIGQILTAYRLPLAGRVSILHRVSGALLFLFLPFLLFLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIA 114
+ + ++ + ++ + WA + H GIR+L+ D + + K+ + + +
Sbjct: 63 SFEVFKGFLSNIIVKLITLVLAWAFLFHFCAGIRHLLMDTNHDAVSKEKGKSTSIVVFVV 122
Query: 115 SILTVLIV 122
S L +
Sbjct: 123 SSLLTIAF 130
>gi|187477680|ref|YP_785704.1| succinate dehydrogenase cytochrome b-556 subunit [Bordetella avium
197N]
gi|115422266|emb|CAJ48790.1| succinate dehydrogenase cytochrome b-556 subunit [Bordetella avium
197N]
Length = 137
Score = 96.7 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Query: 3 SIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA-NGEHT 56
S RP ++ + YRL +SI+HR +G++++L P+V+ F + +
Sbjct: 4 SAAKPRPQFRNISVPQILSYRLPLAGKLSILHRASGALLFLCLPLVIVPLFAASVASPES 63
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ + Y + ++ L W +HH GIRYL D+ + +DK + + A + S+
Sbjct: 64 FAQVAQYAGNPLIKIVLLALIWGYLHHFCAGIRYLALDLHIGIDKAASRKSAAAVFVVSL 123
Query: 117 LTVLIVWI 124
L L+ +
Sbjct: 124 LLTLVFAL 131
>gi|126666300|ref|ZP_01737279.1| Succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Marinobacter sp. ELB17]
gi|126629101|gb|EAZ99719.1| Succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Marinobacter sp. ELB17]
Length = 109
Score = 96.7 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 55/109 (50%)
Query: 14 LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCL 73
+Q+YR T +S HR++G + LG ++V W A + L ++ ++ + L
Sbjct: 1 MQVYRPQLTSVLSFGHRLSGLFLSLGAVLLVGWLLTAATEAQAFTHLNAWLGSALGLLLL 60
Query: 74 FLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
F++T A+ H+ GIR+L+WD + + + I + +SI L+
Sbjct: 61 FIWTLALFFHLCNGIRHLLWDAVIGFELVDIYRSGWIVVFSSIGLTLVT 109
>gi|301786727|ref|XP_002928777.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like isoform 2 [Ailuropoda melanoleuca]
Length = 135
Score = 96.7 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Query: 10 LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSLRCYMDGS- 67
LSP L I M +SI HR TG + G + + N E L ++ G
Sbjct: 18 LSPRLCIRNWSLPMAMSICHRGTGVALSAGVSLFGLSALLIPGNFESHLELVKSLCLGPS 77
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ F + +++H GIR+L+WD+ L Q ++ ++L+ + + +
Sbjct: 78 LIYTAKFALVFPLMYHTWNGIRHLVWDLGKGLKIPQLYQSGVAVLVLTVLSSVGLAAM 135
>gi|152979988|ref|YP_001353196.1| succinate dehydrogenase cytochrome b-556 subunit [Janthinobacterium
sp. Marseille]
gi|151280065|gb|ABR88475.1| succinate dehydrogenase cytochrome b-556 subunit [Janthinobacterium
sp. Marseille]
Length = 136
Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 50/112 (44%)
Query: 13 HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVC 72
L YR SI+HR +G++++L P ++F E + + ++
Sbjct: 19 DLLRYRFPLAAIQSILHRASGALIFLLLPFILFLLDKSLLSEISFEHFKGIASHWFIKLI 78
Query: 73 LFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ WA +HH GIR+L+ DV + +DK + A I S+ +V +
Sbjct: 79 ILALAWAYLHHFCAGIRHLLMDVHVGVDKVAGKKSATIVFAISLPLTALVAL 130
>gi|328785048|ref|XP_393056.2| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial [Apis mellifera]
Length = 153
Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 19/110 (17%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+++ RPLSPHL IY++ T F+SI HR TG ++ + I G
Sbjct: 49 KNLRLKRPLSPHLTIYQIQLTAFLSITHRTTGMILSSYAMLFGIGTLLIPGG-------- 100
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN 111
L +H G+R+L WD+ + L K
Sbjct: 101 -----------KTLLALPATYHTFNGLRHLAWDLGMFLTIKEVYSTGYAV 139
>gi|71278847|ref|YP_268940.1| succinate dehydrogenase, cytochrome b556 subunit [Colwellia
psychrerythraea 34H]
gi|71144587|gb|AAZ25060.1| succinate dehydrogenase, cytochrome b556 subunit [Colwellia
psychrerythraea 34H]
Length = 124
Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ L ++ P SI+HR++G ++ +++F + + ++ Y
Sbjct: 1 MKKQRPVNLDLTTIKMHPAANASILHRVSGVIMVFAIGILLFTLSTSLSSAEGFAQIQGY 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK--INIIASILTVLI 121
+DG F+ +F A+ H+L G+R+L+ D+ + AK + I ++ V+
Sbjct: 61 LDGFFFKFIIFGCLSALTFHVLAGVRHLLMDLGHFEELASGNATAKLIMVIWLAVSAVIG 120
Query: 122 VWI 124
VW+
Sbjct: 121 VWL 123
>gi|68171567|ref|ZP_00544942.1| Succinate dehydrogenase, cytochrome b subunit [Ehrlichia
chaffeensis str. Sapulpa]
gi|88658394|ref|YP_507709.1| succinate dehydrogenase, cytochrome b556 subunit [Ehrlichia
chaffeensis str. Arkansas]
gi|18139860|gb|AAL60178.1|AF416764_1 succinate dehydrogenase subunit C [Ehrlichia chaffeensis]
gi|67999008|gb|EAM85684.1| Succinate dehydrogenase, cytochrome b subunit [Ehrlichia
chaffeensis str. Sapulpa]
gi|88599851|gb|ABD45320.1| succinate dehydrogenase, cytochrome b556 subunit [Ehrlichia
chaffeensis str. Arkansas]
Length = 128
Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RPLSPHLQIY+ +SI+HR TG +++LG V+ + F + + +
Sbjct: 1 MSKVRPLSPHLQIYK--VVYKLSIMHRFTGMILFLGLLVLSWGFILSFLCPQVVYRICSF 58
Query: 64 MDGSVF-----EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
S ++ F++ + +H + GIR++ WD+ L L K + + +++
Sbjct: 59 FCNSYVSLYSLKLITFIWLNVLCYHYMNGIRHIFWDLGLGLSKSAVRTTGVVVVFLCLVS 118
Query: 119 VLIVW 123
I++
Sbjct: 119 SFILY 123
>gi|291226844|ref|XP_002733400.1| PREDICTED: succinate dehydrogenase complex, subunit C-like
[Saccoglossus kowalevskii]
Length = 174
Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 6/124 (4%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLG-TPVVVFWFFCIANGEHTLSSLRCY-M 64
RP SP IY T +SI HR TG+++ V + + ++ +
Sbjct: 52 GRPRSPFW-IYDPQLTAILSITHRATGAIMMCSIATFAVGMNVLPHDFMFYVDWVKGLEL 110
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
V+ W +++H+ G+R+L WD+ + + + + S++ W
Sbjct: 111 PWWVYYAGKATIAWPLMYHLGNGVRHLFWDMGYGFEMRNLYRSGYAVCLWSVVAA---WG 167
Query: 125 IKDI 128
+ I
Sbjct: 168 LAAI 171
>gi|161522866|ref|YP_001585795.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
multivorans ATCC 17616]
gi|189348299|ref|YP_001941495.1| succinate dehydrogenase cytochrome b-556 subunit [Burkholderia
multivorans ATCC 17616]
gi|160346419|gb|ABX19503.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
multivorans ATCC 17616]
gi|189338437|dbj|BAG47505.1| succinate dehydrogenase cytochrome b-556 subunit [Burkholderia
multivorans ATCC 17616]
Length = 138
Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
Query: 1 MSSIKNNRPL-SPHLQI------YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG 53
M++ + RP ++ I YR+ +SI+HR++G++++L P ++F F
Sbjct: 1 MTTSRTPRPREYRNIGIGDITLKYRMPLAAILSILHRVSGALLFLFLPFLLFLFDQSLTS 60
Query: 54 EHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINI 112
E + + ++ V ++ + +WA HH GIR+L+ DV+ + K+ + A +
Sbjct: 61 ELSFEVFKQFLSNIVVKLIVLALSWAFFHHFCAGIRHLLMDVNHDAVSKEGGKRTAVVVF 120
Query: 113 IASILTVLIVWI 124
+ SI + + +
Sbjct: 121 VVSIALTIAMAL 132
>gi|120610878|ref|YP_970556.1| succinate dehydrogenase subunit C [Acidovorax citrulli AAC00-1]
gi|120589342|gb|ABM32782.1| succinate dehydrogenase subunit C [Acidovorax citrulli AAC00-1]
Length = 144
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 1 MSSIKNNRPLSP------HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE 54
M+ I RP L YRL +VSI+HRI+G ++ L P V++ F + E
Sbjct: 1 MTEIAKKRPEFRNINALTDLPTYRLPAAGWVSILHRISGVIMLLLLPFVLWMFDTSVSSE 60
Query: 55 HTLSSLR-------CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQ 106
+ ++ G ++ + WA +HH G+R+L DVS ++K +
Sbjct: 61 ISFGKFTSAFTAGLGFVPGWFIKLVVLALIWAYLHHFTAGLRHLWMDVSHDAVNKDFGSM 120
Query: 107 MAKINIIASILTVLIV 122
AK ++ S+ +++
Sbjct: 121 SAKATLVISLALTVVL 136
>gi|134293105|ref|YP_001116841.1| succinate dehydrogenase subunit C [Burkholderia vietnamiensis G4]
gi|134136262|gb|ABO57376.1| succinate dehydrogenase subunit C [Burkholderia vietnamiensis G4]
Length = 138
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 65/129 (50%), Gaps = 7/129 (5%)
Query: 3 SIKNNRPLSPHLQ------IYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+++ RP ++ YR+ +SI+HRI+G++++L P ++F F E +
Sbjct: 4 AVRKPRPEYRNIGFGDITMKYRMPAAAILSILHRISGALLFLFLPFLLFLFDQSLTSELS 63
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIAS 115
+ ++ V ++ + +WA +HH GIR+L+ DV+ + K+ + A + + S
Sbjct: 64 FEVFKSFLSNIVVKLIVLALSWAFLHHFCAGIRHLLMDVNHDAVSKEGGKRTAVVVFVVS 123
Query: 116 ILTVLIVWI 124
I + + +
Sbjct: 124 IALTIAMAL 132
>gi|308072487|dbj|BAJ22105.1| succinate dehydrogenase cytochrome subunit 3 [Cycas taitungensis]
Length = 130
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ NRPLSPHL IY+ T SI+HRI+G+ +L T V+ FC+ G + + Y
Sbjct: 1 MNINRPLSPHLTIYKPQLTSTFSILHRISGA--FLATMVLFSLLFCLEIGLISFTYGNFY 58
Query: 64 MDGSVFEVCLFLY------TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
F+ A+ +HM G+R+L WD+ L+ + +++
Sbjct: 59 QFSFSVNFPKFILGLVNLTLLALCYHMSNGVRHLWWDLGFFLEFSLIIRIS 109
>gi|255713256|ref|XP_002552910.1| KLTH0D04312p [Lachancea thermotolerans]
gi|238934290|emb|CAR22472.1| KLTH0D04312p [Lachancea thermotolerans]
Length = 168
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 8/129 (6%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA---NGEHTLSS 59
+ + NRP+SPHL IY+ T ++S +HR++G ++ G F A G + +
Sbjct: 40 AQRKNRPVSPHLTIYQPQLTWYLSSLHRVSGVILAFGFFATTIAFGTSALLGLGLTSNNL 99
Query: 60 LRCY---MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN--IIA 114
R Y + + + + H G+R+LIWD L + ++A
Sbjct: 100 ARWYHEKVPRWMDLTAKGSFAYLFAFHFANGLRHLIWDAGKALTLRGVYTTGYAVMAVMA 159
Query: 115 SILTVLIVW 123
T L+ W
Sbjct: 160 LGGTYLLTW 168
>gi|320038993|gb|EFW20928.1| succinate dehydrogenase cytochrome b560 subunit [Coccidioides
posadasii str. Silveira]
Length = 193
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV-----YLGTPVVVFWFFCIANGEH 55
+++ + NRP+SPHL IY+ T VS + R+TG ++ GT VV +
Sbjct: 63 LAAQRLNRPVSPHLSIYKFQITSVVSSLERLTGMMLSGGLYLFGTAYVVSPYLGWDLSSA 122
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+L++ + + F W + H L G +Y++W L+ K Q
Sbjct: 123 SLAAAFGALPFATKAAAKFSIAWPFLFHCLNGTKYMVWSWGKLLNNKAVIQAG 175
>gi|6323765|ref|NP_013836.1| hypothetical protein YMR118C [Saccharomyces cerevisiae S288c]
gi|2493413|sp|Q04487|YM07_YEAST RecName: Full=Putative succinate dehydrogenase [ubiquinone]
cytochrome b subunit, mitochondrial; Flags: Precursor
gi|817878|emb|CAA89756.1| unknown [Saccharomyces cerevisiae]
gi|45269828|gb|AAS56294.1| YMR118C [Saccharomyces cerevisiae]
gi|285814120|tpg|DAA10015.1| TPA: hypothetical protein YMR118C [Saccharomyces cerevisiae S288c]
Length = 196
Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLG--TPVVVFWFFCIANGEHTLS 58
+ S + RP+SPHL +Y + ++S +HRI+G ++ LG + I + T
Sbjct: 66 LVSQRKKRPISPHLTVYEPEMSWYLSSLHRISGVLLALGFYAFTITLGVTTIMGMDTTFQ 125
Query: 59 SLRCY----MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
L + M V + H GIR+LIWD+ L + + I +
Sbjct: 126 DLNKWYHEKMPKWSQWVAKGSAAYLFAFHFGNGIRHLIWDMGYELTNRGVIKTGSIVLAG 185
Query: 115 SILT 118
+++
Sbjct: 186 TLVL 189
>gi|319792256|ref|YP_004153896.1| succinate dehydrogenase, cytochrome b556 subunit [Variovorax
paradoxus EPS]
gi|315594719|gb|ADU35785.1| succinate dehydrogenase, cytochrome b556 subunit [Variovorax
paradoxus EPS]
Length = 148
Score = 95.5 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 13 HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC-------YMD 65
L YRL P VSI+HR++G +++L P ++ F + +++ + + ++
Sbjct: 23 DLTTYRLPPAGIVSILHRVSGVLMFLLLPFTIWMFDTSLSSDYSFARFKAAFNSGLGFVP 82
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDV-SLCLDKKIATQMAKINIIASILTVLIV 122
G F++ WA +HH + G+R+L DV + K+ A + + S+L +++
Sbjct: 83 GWFFKLVALALIWAYLHHFIAGLRHLWMDVSHAAVTKEFGHTSAVVTLALSVLLTVVL 140
>gi|329295932|ref|ZP_08253268.1| succinate dehydrogenase, cytochrome b556 subunit [Plautia stali
symbiont]
Length = 129
Score = 95.5 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 55/125 (44%), Gaps = 1/125 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K P++ L R T SI+HR++G + ++ ++++ +
Sbjct: 3 KTVKKQTPVNLDLSTIRFPVTAISSILHRVSGVITFVALGILLWLLGLSLSSPEGFQQAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIASILTVL 120
MD + ++ A+ +H GIR+++ D ++ T+ A+ + +++ +
Sbjct: 63 SIMDSFFAKFIMWGILTALAYHAASGIRHMLADFGFTAETLQVGTRTAQAVFVITVVLSI 122
Query: 121 IVWII 125
+ ++
Sbjct: 123 LAGVL 127
>gi|91789451|ref|YP_550403.1| succinate dehydrogenase subunit C [Polaromonas sp. JS666]
gi|91698676|gb|ABE45505.1| succinate dehydrogenase subunit C [Polaromonas sp. JS666]
Length = 148
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 14/135 (10%)
Query: 2 SSIKNNRPLSP------HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
+++ RP L YRL VSI+HRI+G++++L P +++ F + E
Sbjct: 6 TTVAKKRPEFRNINAFTDLPSYRLPLAGLVSILHRISGAIMFLLMPFIIWMFDTSISSEI 65
Query: 56 TLSSLRCYM-------DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV-SLCLDKKIATQM 107
+ S + G ++++ WA +HH + G+R+L D + K+
Sbjct: 66 SFSRFKSAFNAGMLGLPGFLWKLVALALIWAYLHHFIAGLRHLWMDTSHAAVSKEFGKSS 125
Query: 108 AKINIIASILTVLIV 122
A + + SI L++
Sbjct: 126 AAVTLAVSIGLTLVL 140
>gi|134094984|ref|YP_001100059.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Herminiimonas arsenicoxydans]
gi|133738887|emb|CAL61934.1| Succinate dehydrogenase cytochrome b556 subunit (Cytochrome b-556)
[Herminiimonas arsenicoxydans]
Length = 136
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 5/127 (3%)
Query: 3 SIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL 57
S+K +P ++ I YR+ VSI+HRI+G++++L PV++ E +
Sbjct: 4 SLKTGKPQFRNINIADLVHYRMPLAAIVSIMHRISGALIFLLLPVILLLLDKSLMSEISF 63
Query: 58 SSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASIL 117
+ ++ + WA +HH GIR+L DV + +DK + A I + S+
Sbjct: 64 EHFKGIASHWFVKLIILALVWAYLHHFCAGIRHLFADVHVGVDKVKGRKSAVIVLAISLP 123
Query: 118 TVLIVWI 124
+V +
Sbjct: 124 LTALVAL 130
>gi|190571454|ref|YP_001975812.1| succinate dehydrogenase, cytochrome b556 subunit [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|190357726|emb|CAQ55176.1| succinate dehydrogenase, cytochrome b556 subunit [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
Length = 123
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL--SSLRCY 63
+NRPLSPHLQIY++ T F SI+HR+TG +++L ++ ++F + L
Sbjct: 2 SNRPLSPHLQIYKVQVTSFFSIMHRLTGILLFLLLIILSWYFILYVYSPKLIIVRCLNAL 61
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ V ++ L + ++H L GIR+L+WD L L+ + A + I L+ +
Sbjct: 62 LFTPVAKLAYILCFVSFMYHFLNGIRHLLWDAGLNLEIASVLKSAILLTIMLFLSTMAF 120
>gi|323353090|gb|EGA85390.1| YMR118C-like protein [Saccharomyces cerevisiae VL3]
Length = 196
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLG--TPVVVFWFFCIANGEHTLS 58
+ S + RP+SPHL +Y + ++S +HRI+G ++ LG + I + T
Sbjct: 66 LVSQRKKRPISPHLTVYEPEMSWYLSSLHRISGVLLALGFYAFTITLGVTTIMGMDTTFQ 125
Query: 59 SLRCY----MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
L + M V + H GIR+LIWD+ L + + I +
Sbjct: 126 DLNKWYHEKMPKWSQWVAKGSAAYLFAFHFGNGIRHLIWDMGYELTNRGVIKTGSIVLAG 185
Query: 115 SILT 118
+++
Sbjct: 186 TLVL 189
>gi|323332076|gb|EGA73487.1| YMR118C-like protein [Saccharomyces cerevisiae AWRI796]
Length = 228
Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLG--TPVVVFWFFCIANGEHTLS 58
+ S + RP+SPHL +Y + ++S +HRI+G ++ LG + I + T
Sbjct: 98 LVSQRKKRPISPHLTVYEPEMSWYLSSLHRISGVLLALGFYAFTITLGVTTIMGMDTTFQ 157
Query: 59 SLRCY----MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
L + M V + H GIR+LIWD+ L + + I +
Sbjct: 158 DLNKWYHEKMPKWSQWVAKGSAAYLFAFHFGNGIRHLIWDMGYELTNRGVIKTGSIVLAG 217
Query: 115 SILT 118
+++
Sbjct: 218 TLVL 221
>gi|328772132|gb|EGF82171.1| hypothetical protein BATDEDRAFT_36733 [Batrachochytrium
dendrobatidis JAM81]
Length = 205
Score = 94.7 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 49/114 (42%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
S + +RP+SPHL IY+ T ++S R T + +G V + + ++S
Sbjct: 82 KSERLHRPISPHLTIYQPQLTWYLSAAFRATSGALAVGFYGVALAYVFLPISSVAIASFI 141
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ + + F + H+ G+R+LIWD + L+ K + S
Sbjct: 142 HSLPAAALFLGKFTLAAPISFHLFNGLRHLIWDTATLLNLKGVYNSGYTVLGLS 195
>gi|256269648|gb|EEU04929.1| YMR118C-like protein [Saccharomyces cerevisiae JAY291]
Length = 196
Score = 94.7 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLG--TPVVVFWFFCIANGEHTLS 58
+ S + RP+SPHL +Y + ++S +HRI+G ++ LG + I + T
Sbjct: 66 LVSQRKKRPISPHLTVYEPEMSWYLSSLHRISGVLLALGFYAFTITLGVTTIMGMDTTFQ 125
Query: 59 SLRCY----MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
L + M V + H GIR+LIWD+ L + + I +
Sbjct: 126 DLNKWYHEKMPKWSQWVAKGSAAYLFAFHFGNGIRHLIWDMGYELTNRGVIKTGSIVLAG 185
Query: 115 SILT 118
+++
Sbjct: 186 TLVL 189
>gi|187921487|ref|YP_001890519.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
phytofirmans PsJN]
gi|187719925|gb|ACD21148.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
phytofirmans PsJN]
Length = 138
Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 2 SSIKNNRPLSPH------LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
++K RP + L YRL VSI+HR++G ++++ P +++ F E
Sbjct: 3 EAVKKPRPEFRNIGIGQILTAYRLPLAGRVSILHRVSGGLLFVFLPFLLYLFGQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIA 114
+ + ++ + ++ + WA + H G+R+L+ D + + K+ + + ++
Sbjct: 63 SFEVFKGFLSNIIVKLITLVLAWAFLFHFCAGVRHLLMDTNHNAVTKEKGKSTSIVVLVV 122
Query: 115 SILTVLIV 122
S L +
Sbjct: 123 SSLLTIAF 130
>gi|297458267|ref|XP_002684106.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like [Bos taurus]
gi|297472057|ref|XP_002685669.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like isoform 3 [Bos taurus]
gi|296490236|gb|DAA32349.1| succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like
isoform 3 [Bos taurus]
Length = 135
Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Query: 10 LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSLRCYMDGS- 67
LSP L I M +SI HR TG + G + + + E L ++ G
Sbjct: 18 LSPQLCIRNWSLPMAMSICHRGTGIALSAGVSLFGLSALLVPGSFESHLEFVKSLCLGPA 77
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ F + +++H GIR+L+WD+ L Q + ++ ++L+ + + +
Sbjct: 78 LIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLTISQLHQSGEAVLVLTVLSSVGLAAM 135
>gi|151946274|gb|EDN64505.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190408347|gb|EDV11612.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
gi|207342306|gb|EDZ70103.1| YMR118Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259148692|emb|CAY81937.1| EC1118_1M3_2916p [Saccharomyces cerevisiae EC1118]
gi|323303544|gb|EGA57336.1| YMR118C-like protein [Saccharomyces cerevisiae FostersB]
gi|323307750|gb|EGA61013.1| YMR118C-like protein [Saccharomyces cerevisiae FostersO]
gi|323336310|gb|EGA77581.1| YMR118C-like protein [Saccharomyces cerevisiae Vin13]
gi|323347196|gb|EGA81471.1| YMR118C-like protein [Saccharomyces cerevisiae Lalvin QA23]
Length = 196
Score = 94.4 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLG--TPVVVFWFFCIANGEHTLS 58
+ S + RP+SPHL +Y + ++S +HRI+G ++ LG + I + T
Sbjct: 66 LVSQRKKRPISPHLTVYEPEMSWYLSSLHRISGVLLALGFYAFTITLGVTTIMGMDTTFQ 125
Query: 59 SLRCY----MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
L + M V + H GIR+LIWD+ L + + I +
Sbjct: 126 DLNKWYHEKMPKWSQWVAKGSAAYLFAFHFGNGIRHLIWDMGYELTNRGVIKTGSIVLAG 185
Query: 115 SILT 118
+++
Sbjct: 186 TLVL 189
>gi|304415184|ref|ZP_07395899.1| succinate dehydrogenase membrane subunit 1 that binds cytochrome
b556 [Candidatus Regiella insecticola LSR1]
gi|304282966|gb|EFL91414.1| succinate dehydrogenase membrane subunit 1 that binds cytochrome
b556 [Candidatus Regiella insecticola LSR1]
Length = 129
Score = 94.4 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ +L + SI+HR++G + ++ ++++ +
Sbjct: 5 LKKQRPINLDLQTIQLPVSALASILHRVSGVITFVAVGILLWLLGLSLSSPEGFMQAATI 64
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLC-LDKKIATQMAKINIIASILTVLIV 122
+ V + + A+ +H+ GGIR+L+ D T+ A++ I +++ ++
Sbjct: 65 LSSIVAKFIFWGILTALAYHICGGIRHLLMDFGYIPESLTAGTRSAQVVIGLTLVLSILA 124
Query: 123 WII 125
+
Sbjct: 125 GVF 127
>gi|186473180|ref|YP_001860522.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
phymatum STM815]
gi|184195512|gb|ACC73476.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
phymatum STM815]
Length = 138
Score = 94.4 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 62/130 (47%), Gaps = 7/130 (5%)
Query: 2 SSIKNNRPLSPH------LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
++K RP + L YRL VSI+HR++G ++++ P +++ F + E
Sbjct: 3 EAVKKPRPEFRNIGIGQILTAYRLPLAGRVSILHRVSGGLLFVFLPFLLYLFDQSLSSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIA 114
+ + ++ + ++ + WA + H G+R+L+ D++ + K+ + + + +
Sbjct: 63 SFEVFKGFLSNIIVKLITLVLGWAFLFHFCAGVRHLLMDMNHDAVSKERGKRTSVVVLAV 122
Query: 115 SILTVLIVWI 124
S + + +
Sbjct: 123 SSILTIAFAL 132
>gi|254468837|ref|ZP_05082243.1| succinate dehydrogenase, cytochrome b556 subunit [beta
proteobacterium KB13]
gi|207087647|gb|EDZ64930.1| succinate dehydrogenase, cytochrome b556 subunit [beta
proteobacterium KB13]
Length = 124
Score = 94.4 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 64/121 (52%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
++N P + +L R VSI+HR++G V+++ P++ + E+ + +
Sbjct: 1 MENRNPKNLNLFTIRFPVPAMVSILHRVSGVVLFVLMPLLTISLYWSLKNENIFNWVLLL 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
D ++F++ L W +IHH++ G R+L+ D+ +D IA +KI ++AS L I
Sbjct: 61 FDTTLFKLIKCLMLWGIIHHLIAGTRHLLLDLHFGVDLIIARMTSKIVLVASFLLTFIAG 120
Query: 124 I 124
I
Sbjct: 121 I 121
>gi|328775159|gb|AEB39974.1| succinate dehydrogenase subunit 3 [Funaria hygrometrica]
Length = 131
Score = 94.4 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFW-----FFCIANGEHTLS 58
+K NRPLSPHL IY+ T +SI HRI+G+ + + + + + + +
Sbjct: 1 MKINRPLSPHLTIYKPQLTSTLSIFHRISGAFLAIMVFSSILFLKIGDLNLTSYYFYRYA 60
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
+ + A+ +HM GIR+L+WD+ L+ I + +
Sbjct: 61 FFFTSYSYWLILSLVNFSLLALCYHMSNGIRHLLWDLGFFLELSKVYTSGIIMLFCAAFL 120
Query: 119 VL 120
+
Sbjct: 121 AV 122
>gi|293604090|ref|ZP_06686500.1| succinate dehydrogenase cytochrome b558 subunit [Achromobacter
piechaudii ATCC 43553]
gi|292817514|gb|EFF76585.1| succinate dehydrogenase cytochrome b558 subunit [Achromobacter
piechaudii ATCC 43553]
Length = 138
Score = 94.4 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA-NGEHTLSSLRCYMDGSVFEVCLFL 75
YRL +SI+HRI+G +++L P+V+ F + + + + + ++ +
Sbjct: 24 YRLPLAGKLSILHRISGILLFLCLPLVIVPLFAASVTAPQSFAWIAAIATHPIVKLVFLV 83
Query: 76 YTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
W +HH GIRYL+ D+ + +DK A + A + S+ L+ +
Sbjct: 84 LMWGYLHHFCAGIRYLLLDLHIGIDKLSAKKSAGVVFGVSLALTLVFGL 132
>gi|269139933|ref|YP_003296634.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Edwardsiella tarda EIB202]
gi|267985594|gb|ACY85423.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Edwardsiella tarda EIB202]
gi|304559768|gb|ADM42432.1| Succinate dehydrogenase cytochrome b-556 subunit [Edwardsiella
tarda FL6-60]
Length = 129
Score = 94.4 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ L R T SI+HR++G V++ ++++ + +
Sbjct: 5 VKKQRPVNLDLPTIRFPVTAIASILHRVSGVAVFIAIGILLWLLGLSLSSADGFAQAAAL 64
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-----KIATQMAKINIIASILT 118
+D ++ + L+ A+ +H+ GGIR+L+ D + + A ++ S+
Sbjct: 65 LDSALARLVLWGILTALAYHICGGIRHLLMDFGYLEESFSVGCRSAQLTFAATVLLSVCA 124
Query: 119 VLIVW 123
++VW
Sbjct: 125 GVLVW 129
>gi|195389540|ref|XP_002053434.1| GJ23876 [Drosophila virilis]
gi|194151520|gb|EDW66954.1| GJ23876 [Drosophila virilis]
Length = 269
Score = 94.4 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 2/125 (1%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLG--TPVVVFWFFCIANGEHTLSSL 60
+ K R +SPHL IY+ T +SI RI+G ++ +G T + I
Sbjct: 95 NKKLGRAMSPHLSIYKKQLTSVMSIFLRISGFILGIGIWTIGLTGLLCDIDVNAMAEKIE 154
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+C +VF + +H++ G R+LIW +++ L K+ I+ + +
Sbjct: 155 KCDCSRTVFNMLKLFIIIPFAYHIVAGTRHLIWHLNVFLSKREIYATGYAAIVLTFILAA 214
Query: 121 IVWII 125
+ I
Sbjct: 215 ALAGI 219
>gi|239613339|gb|EEQ90326.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
dermatitidis ER-3]
Length = 278
Score = 94.4 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT-PVVVFWFFCIANGEHTLSS 59
+ + NRP+SP+L IYR T +SI+HR TG +V G + G H S+
Sbjct: 118 LRKQRLNRPISPNLTIYRPQVTSVLSILHRNTGLLVSGGFYLFFAVYLASPWLGWHIDSA 177
Query: 60 LRCYMDGSVFEVCLFLY----TWAVIHHMLGGIRYLIW 93
G++ L H G+R+LIW
Sbjct: 178 SMAASFGALPVAAKVLLRTTVALPFTFHSFNGVRHLIW 215
>gi|116199017|ref|XP_001225320.1| hypothetical protein CHGG_07664 [Chaetomium globosum CBS 148.51]
gi|88178943|gb|EAQ86411.1| hypothetical protein CHGG_07664 [Chaetomium globosum CBS 148.51]
Length = 188
Score = 94.4 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFV-SIVHRITGSVVY-----LGTPVVVFWFFCIANGE 54
++ + NRP+SPHL +Y T F SI RITGS T +
Sbjct: 57 LAKQRINRPVSPHLDVYDKQQTWFGGSIWMRITGSAFSGSLYVFATAYLAAPLVGWHLES 116
Query: 55 HTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
+L++ + + FL W H + G+R+L++D+++ ++ + A
Sbjct: 117 ASLAAAFGALPFAAKGALKFLAAWPFAFHAINGVRHLLFDMAVGFKRQTIVKSGWYIWGA 176
Query: 115 SILTVL 120
S+++ L
Sbjct: 177 SVVSGL 182
>gi|326317737|ref|YP_004235409.1| succinate dehydrogenase, cytochrome b556 subunit [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323374573|gb|ADX46842.1| succinate dehydrogenase, cytochrome b556 subunit [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 144
Score = 94.4 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 1 MSSIKNNRPLSP------HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE 54
M+ I RP L YRL +VSI+HRI+G ++ L P V++ F + E
Sbjct: 1 MTEIAKKRPEFRNINALTDLPTYRLPAAGWVSILHRISGVIMLLLLPFVLWMFDTSVSSE 60
Query: 55 HTLSSLR-------CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQ 106
+ ++ G ++ + WA +HH G+R+L DVS ++K +
Sbjct: 61 ISFGKFTSAFTAGLGFVPGWFIKLVVLALIWAYLHHFTAGLRHLWMDVSHDAVNKHFGSM 120
Query: 107 MAKINIIASILTVLIV 122
AK+ + S+ +I+
Sbjct: 121 SAKVTLAISLGLTVIL 136
>gi|170094680|ref|XP_001878561.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647015|gb|EDR11260.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 181
Score = 94.0 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 2/128 (1%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT-PVVVFWFFCIANGEHT-LS 58
+ + RP SPH IY+ T SI +R+TGS + + + + + +
Sbjct: 54 LDKQRLLRPSSPHFTIYQPQLTWLGSIANRVTGSGLSVLLYGFSIAYLVAPGTFDSAHVV 113
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
+ V + H L G+R+L WD+ + K + + A+ ++
Sbjct: 114 EFVAGLPEVVKYAGKAILAAPFAFHSLNGLRHLGWDMGKFVTVKGCYRTGYAVLGATAIS 173
Query: 119 VLIVWIIK 126
+++ ++K
Sbjct: 174 TVVLTLMK 181
>gi|253996130|ref|YP_003048194.1| succinate dehydrogenase, cytochrome b556 subunit [Methylotenera
mobilis JLW8]
gi|253982809|gb|ACT47667.1| succinate dehydrogenase, cytochrome b556 subunit [Methylotenera
mobilis JLW8]
Length = 129
Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 56/115 (48%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
NRP + +L RL VSI+HR++G V++L TP +++ N E +LS+L
Sbjct: 8 RNRPKNLNLFTIRLPINAVVSILHRMSGMVLFLFTPALIWSLQASLNSEASLSALGDMFQ 67
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
F++ L +W HH G+R+L DV A ++I + ++L
Sbjct: 68 HWAFKLMLIALSWPFFHHFYAGLRHLGQDVHWMTTLNKAQFSSRIVLGLGACSML 122
>gi|312071011|ref|XP_003138411.1| hypothetical protein LOAG_02826 [Loa loa]
gi|307766426|gb|EFO25660.1| hypothetical protein LOAG_02826 [Loa loa]
Length = 187
Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 2/124 (1%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M RP+SPHL +Y+ T VS HR+TG + + F + T
Sbjct: 46 MRQRALKRPISPHLTVYKPQVTWMVSGFHRVTGCAMAGALLIGGVGFALLPLNFTTFIDF 105
Query: 61 RCYMDGSVF--EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
+ ++ F+ + ++ H L GIR++ +D++L D + + + L
Sbjct: 106 IRGLGLPWVVTDMFKFVIAYPIVFHSLNGIRFIAFDLALGTDIASVYASGYLVLSLAALI 165
Query: 119 VLIV 122
L V
Sbjct: 166 ALGV 169
>gi|58584743|ref|YP_198316.1| succinate dehydrogenase subunit C sdhC [Wolbachia endosymbiont
strain TRS of Brugia malayi]
gi|58419059|gb|AAW71074.1| Succinate dehydrogenase subunit C sdhC [Wolbachia endosymbiont
strain TRS of Brugia malayi]
Length = 125
Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL--SSLRCYM 64
+RPLSPHLQIY++ T F SI+HR+TG +++L ++ ++F L +
Sbjct: 3 DRPLSPHLQIYKVQVTNFFSIMHRLTGILLFLLLVMLSWYFTLHVYFPELFIVKCLNVLL 62
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ ++ L + +H L GIR+L+WD L+ + A + + IL+ +
Sbjct: 63 STFIAKLVCILCFISFSYHFLNGIRHLLWDAGFNLEITDVLKSAMLLTVMLILSTMAF 120
>gi|312796841|ref|YP_004029763.1| succinate dehydrogenase cytochrome b556 subunit [Burkholderia
rhizoxinica HKI 454]
gi|312168616|emb|CBW75619.1| Succinate dehydrogenase cytochrome b556 subunit (EC 1.3.99.1)
[Burkholderia rhizoxinica HKI 454]
Length = 185
Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 64/128 (50%), Gaps = 5/128 (3%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
++K RP ++ I YRL VSI+HR++G++++L P ++ E +
Sbjct: 52 EAVKKPRPEYRNISIGQILRYRLPLAGRVSILHRVSGALLFLLLPFSLYLLEQSLTSELS 111
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+SL+ + + ++ + + +WA + H G+R+L+ D + K+ Q + + + S
Sbjct: 112 FASLKAFFSYPLVKLIVLVLSWAYLFHFCAGLRHLLLDTHRAVTKQGGKQTSIVVFVVSS 171
Query: 117 LTVLIVWI 124
+ + V +
Sbjct: 172 VLTIAVAL 179
>gi|150406491|ref|YP_001315099.1| succinate:cytochrome c oxidoreductase subunit 3 [Chlorokybus
atmophyticus]
gi|126507728|gb|ABO15125.1| succinate:cytochrome c oxidoreductase subunit 3 [Chlorokybus
atmophyticus]
Length = 133
Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWF-----FCIANGEHTLS 58
+ +RPLSPHL IY+ T +SI HRITG+ + + +F + + +
Sbjct: 3 MTLHRPLSPHLTIYKPQLTSMLSIFHRITGAFMATSVLLTIFLLKICNFHLTSYNFYIFA 62
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
+ + LFL ++ +HM G+R+L WD+ L LD + ++ +
Sbjct: 63 FILFSYYKWLILTVLFLLIISLHYHMSNGLRHLTWDLGLSLDIAKVYSSGRFVLVGGTIL 122
Query: 119 VLI 121
++I
Sbjct: 123 LII 125
>gi|327351834|gb|EGE80691.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
dermatitidis ATCC 18188]
Length = 293
Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT-PVVVFWFFCIANGEHTLSS 59
+ + NRP+SP+L IYR T +SI+HR TG +V G + G H S+
Sbjct: 118 LRKQRLNRPISPNLTIYRPQITSVLSILHRNTGLLVSGGFYLFFAVYLASPWLGWHIDSA 177
Query: 60 LRCYMDGSVFEVCLFLY----TWAVIHHMLGGIRYLIW 93
G++ L H G+R+LIW
Sbjct: 178 SMAASFGALPVAAKVLLRTTVALPFTFHSFNGVRHLIW 215
>gi|268572383|ref|XP_002641307.1| C. briggsae CBR-MEV-1 protein [Caenorhabditis briggsae]
gi|1169193|sp|P41955|C560_CAEBR RecName: Full=Succinate dehydrogenase cytochrome b560 subunit,
mitochondrial; Flags: Precursor
gi|450581|gb|AAA20078.1| CDS structure deduced from alignment with C. elegans cyt-1 gene
[Caenorhabditis briggsae]
gi|187039998|emb|CAP21181.1| CBR-MEV-1 protein [Caenorhabditis briggsae AF16]
Length = 184
Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RP++PHL IY+ T +S HRI+G V+ GT +V F + ++ Y+ G
Sbjct: 51 KRPIAPHLTIYQPQLTWMLSGFHRISGCVMA-GTLLVGGLGFAVL--PLDFTTFVEYIRG 107
Query: 67 S-----VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASILTVL 120
V V ++ + +I H L GIR+L +D++ +D + + S + L
Sbjct: 108 WNLPCAVTAVFKYIIAFPIIFHTLNGIRFLGFDLAKGVDNIGQVYKSGWLVFGVSAVIAL 167
Query: 121 IV 122
+
Sbjct: 168 AI 169
>gi|332526164|ref|ZP_08402299.1| succinate dehydrogenase, cytochrome b556 subunit [Rubrivivax
benzoatilyticus JA2]
gi|332110004|gb|EGJ10632.1| succinate dehydrogenase, cytochrome b556 subunit [Rubrivivax
benzoatilyticus JA2]
Length = 140
Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 12/130 (9%)
Query: 5 KNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
RP+ ++ I YRL FVSI+HRI+G+++++ P V++ F E + +
Sbjct: 3 STQRPVYRNIHISQIASYRLPLAGFVSILHRISGALMFVLLPFVIWLFDNSLTSEISFDT 62
Query: 60 LR-------CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINI 112
++ + ++ + WA +HH++ GIRYL DVS K+ A + +
Sbjct: 63 FTSAFVAGVGFVPAFLVKLVVLALIWAYLHHLIAGIRYLWMDVSHAYSKQSGRSSAIVTL 122
Query: 113 IASILTVLIV 122
S+ ++
Sbjct: 123 ALSLPLTALL 132
>gi|121605923|ref|YP_983252.1| succinate dehydrogenase, cytochrome b subunit [Polaromonas
naphthalenivorans CJ2]
gi|120594892|gb|ABM38331.1| succinate dehydrogenase subunit C [Polaromonas naphthalenivorans
CJ2]
Length = 148
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 14/135 (10%)
Query: 2 SSIKNNRPLSP------HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
S+ + RP L YRL VSI+HRI+G +++L P +++ F + E
Sbjct: 6 STQRAKRPEFRNINAFTDLPGYRLPLAGLVSILHRISGFIMFLLMPFIIWMFDTSISSEI 65
Query: 56 TLSSLRCYM-------DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQM 107
+ + G ++++ WA +HH L G+R+L D S + K Q
Sbjct: 66 SFDRFKAAFNVGMLGVPGILWKLVALALIWAYLHHFLAGLRHLWMDASHEAVSKDFGRQS 125
Query: 108 AKINIIASILTVLIV 122
A + SI + +
Sbjct: 126 AAFTLAVSIGLTIAL 140
>gi|269959019|ref|YP_003328808.1| succinate dehydrogenase cytochrome B-556 subunit [Anaplasma
centrale str. Israel]
gi|269848850|gb|ACZ49494.1| succinate dehydrogenase cytochrome B-556 subunit [Anaplasma
centrale str. Israel]
Length = 127
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC- 62
+ +RPLSPHLQIYRL ++SI HR +G +++ G V+ + F + +
Sbjct: 2 VLRSRPLSPHLQIYRLPVAAWLSITHRASGLLLFFGLLVLSWLFVLLRCAPDCVMPFLAN 61
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA----SILT 118
+ ++ F A +H G+R+L+WD + LDK + T ++ S++T
Sbjct: 62 PWGFFLVKLLSFSCCVAFCYHYFNGVRHLLWDCGVGLDKTVVTASNTFVLLLTAAFSVVT 121
Query: 119 VLIVWI 124
VW+
Sbjct: 122 FFFVWL 127
>gi|38638302|ref|NP_943707.1| succinate:cytochrome c oxidoreductase subunit 3 [Chara vulgaris]
gi|32966616|gb|AAP92199.1| succinate:cytochrome c oxidoreductase subunit 3 [Chara vulgaris]
Length = 131
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-----EHTLS 58
+K NRPLSPH+ IY+ T SI HRI G+ + + +F +
Sbjct: 1 MKINRPLSPHITIYKPQLTSTFSIFHRICGAFLATTVLFSILFFKICELSLTFYHFYLFV 60
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
+ L A+ +HM GIR+L+WD+ LD I +
Sbjct: 61 FYFICYFHWLIFSLFNLAFLALCYHMSNGIRHLLWDLGHSLDLSKVYTSGTIMFFFAACL 120
Query: 119 VLI 121
V +
Sbjct: 121 VTL 123
>gi|33320238|gb|AAQ05856.1| SdhC protein [Cupriavidus necator]
Length = 140
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
++K RP ++ I YRL VSI+HR++G++++L P V++ F E +
Sbjct: 7 EAVKQARPEYRNIGIAQIARYRLPWAGKVSILHRVSGALMFLLLPFVLYLFEQSITSELS 66
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
+ + G ++ L + W +HH GIR+L+ DV + + K + + A
Sbjct: 67 FAKFSALLSGGFVKLVLLVLIWGYLHHFCAGIRFLLLDVHVGVSKPASAKSAI 119
>gi|186470389|ref|YP_001861707.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
phymatum STM815]
gi|184196698|gb|ACC74661.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
phymatum STM815]
Length = 138
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 3 SIKNNRPLSPH------LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
++K RP + L YRL VSI+HR++G ++++ P +++ F + E +
Sbjct: 4 TLKKPRPEFRNIGIGQILTAYRLPLAGRVSILHRVSGGLLFVFLPFLLYLFDQSLSSELS 63
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIAS 115
+ ++ + ++ + WA + H G+R+L+ D++ + K+ + + + + S
Sbjct: 64 FEVFKGFLSNIIVKLITLVLGWAFLFHFCAGVRHLLMDMNHDAVSKERGKRTSVVVLAVS 123
Query: 116 ILTVLIVWI 124
+ + +
Sbjct: 124 SILTIAFAL 132
>gi|209738434|gb|ACI70086.1| Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor [Salmo salar]
Length = 131
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 2/106 (1%)
Query: 18 RLIPTMFVSIVHRITGSVVYLGTP-VVVFWFFCIANGEHTLSSLRCYMDGS-VFEVCLFL 75
R M +SI HR TG + G + N + L + G + + F
Sbjct: 21 RWSLPMMMSITHRGTGVGLSGGISAFALLALVLPGNYPYYLDLIHSLSVGPALLSLAKFG 80
Query: 76 YTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ V +H L GIR+L WD + + I+ SILT +
Sbjct: 81 IAFPVSYHTLNGIRHLFWDSGKGFKIPEVYRSGYVVIVLSILTSIA 126
>gi|324520630|gb|ADY47681.1| Succinate dehydrogenase cytochrome b560 subunit [Ascaris suum]
Length = 192
Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 2/124 (1%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M RP++PHL IY+ T VS +HR+TG + + F + T
Sbjct: 51 MRQRALKRPIAPHLTIYKPQMTWMVSGLHRVTGCAMAGTLLIGGVGFSVLPLDFTTFVEF 110
Query: 61 RCYMDGSVFEV--CLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
+ + F+ + + H L GIR++ +D++ D + A + + + L
Sbjct: 111 IRGLGIPWVILDTFKFIIAFPIAFHTLNGIRFIGFDMAKGTDIPSIYRGAYLVLGLAALI 170
Query: 119 VLIV 122
L V
Sbjct: 171 SLAV 174
>gi|126740505|ref|ZP_01756192.1| Succinate dehydrogenase cytochrome b-556 subunit [Roseobacter sp.
SK209-2-6]
gi|126718306|gb|EBA15021.1| Succinate dehydrogenase cytochrome b-556 subunit [Roseobacter sp.
SK209-2-6]
Length = 103
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 42/99 (42%)
Query: 24 FVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHH 83
SI+ RITG+ + + +VV+W A + + L L T + +H
Sbjct: 1 MSSILTRITGNALIIAVIMVVWWLLAAATSAEYFELANGLLTSWFGRIVLLLSTLGIWYH 60
Query: 84 MLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
L G+R+L +D LD + A ++ I S + I
Sbjct: 61 FLAGLRHLYFDAGHGLDIETAEKLGWGCIAGSFVLTAIT 99
>gi|152996816|ref|YP_001341651.1| succinate dehydrogenase cytochrome b556 subunit [Marinomonas sp.
MWYL1]
gi|150837740|gb|ABR71716.1| Succinate dehydrogenase cytochrome b556 subunit [Marinomonas sp.
MWYL1]
Length = 110
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 19 LIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL-RCYMDGSVFEVCLFLYT 77
+ T VSI+HRITG ++++G + + F + + + + ++
Sbjct: 1 MPLTAIVSILHRITGIILFVGLAFLFYAFDLSLESQEGFDQVVNALQTNFLVKFVIWGVV 60
Query: 78 WAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI--VWI 124
A+++H + G+++L D+ + + A NI+ +++ +++ VWI
Sbjct: 61 SALMYHFVAGVKHLFMDMGYFEELESGRSAAIANIVIAVVLIVLAGVWI 109
>gi|3273343|dbj|BAA31213.1| fumarate reductase cytochrome b large subunit [Rhodoferax
fermentans]
Length = 147
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 11 SPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM------ 64
P L YR S +HR++G++++ P V++ F + E + + +
Sbjct: 20 FPSLITYRWPLASLASGMHRVSGAIMFFLMPFVIWMFDASISSEVSFARFKAAFNIGMLG 79
Query: 65 -DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV-SLCLDKKIATQMAKINIIASILTVLIV 122
G ++++ WA++HH + GIR+L D + K Q A + + ++ ++
Sbjct: 80 IPGFLWKLVALGLIWAMLHHFIAGIRHLWMDTHHHHVSKDFGRQTAAVVLGLTLSLTAVL 139
>gi|238920753|ref|YP_002934268.1| succinate dehydrogenase, cytochrome b556 subunit, [Edwardsiella
ictaluri 93-146]
gi|238870322|gb|ACR70033.1| succinate dehydrogenase, cytochrome b556 subunit, putative
[Edwardsiella ictaluri 93-146]
Length = 129
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
++K RP++ L R T SI+HR++G V++ ++++ + +
Sbjct: 3 KNVKKQRPVNLDLPTIRFPITAIASILHRVSGVAVFIAIGILLWLLGLSLSSAGGFAQAA 62
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASILTVL 120
+D ++ ++ L+ A+ +H+ GGIR+L+ D + + + A++ A++L +
Sbjct: 63 ALLDSALAKLVLWGILTALAYHICGGIRHLLMDFGYLEESFSVGCRSAQLAFAATVLLSV 122
Query: 121 I--VWI 124
VW+
Sbjct: 123 CAGVWV 128
>gi|195452048|ref|XP_002073190.1| GK13994 [Drosophila willistoni]
gi|194169275|gb|EDW84176.1| GK13994 [Drosophila willistoni]
Length = 230
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLG--TPVVVFWFFCIANGEHTLSSL 60
+I R LSP L IY+ T +SI R+TG + L ++ +F + G+
Sbjct: 25 NINLGRHLSPCLSIYKRELTSVMSISLRMTGFFLALCVWAVGILGFFGTRSLGDWAAKLE 84
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
C S+ F+ + +H++ G R+L+W ++ L K + + S+L
Sbjct: 85 ECDCKRSIVNAAKFMLVFPFSYHLVAGARHLLWHFNIFLTKPQIYATGYVALALSVLLTA 144
Query: 121 IV 122
+
Sbjct: 145 AL 146
>gi|160897868|ref|YP_001563450.1| succinate dehydrogenase, cytochrome b556 subunit [Delftia
acidovorans SPH-1]
gi|160363452|gb|ABX35065.1| succinate dehydrogenase, cytochrome b556 subunit [Delftia
acidovorans SPH-1]
Length = 140
Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 9/106 (8%)
Query: 1 MSSIKNNRPLSP------HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE 54
M+ RP L YRL P VSI+HRI+G ++++ P +++ E
Sbjct: 1 MTEQAKKRPEFRNINFFKDLPTYRLPPAGIVSILHRISGLLMFILLPFILWMMDMSLTSE 60
Query: 55 HTLSSLRCYMD---GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL 97
+ G ++ WA +HH G+R+L DV+
Sbjct: 61 ISFDGFTSVFAGPFGWFLKLVCLALIWAYLHHFCAGVRHLFMDVNH 106
>gi|312221584|emb|CBY01524.1| similar to succinate dehydrogenase cytochrome b560 subunit
[Leptosphaeria maculans]
Length = 174
Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 5/125 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
++ + RP+SPHL IY+ T + S ++R+T + + + L +
Sbjct: 44 LAKQRTRRPVSPHLSIYKPQITWYGSALNRVTAIALSGSLYLFGIAYLAAPYTGWHLETA 103
Query: 61 RCYMDGSVFEVCLFL-----YTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ + + + + + +H L G+R+L WD + + + +
Sbjct: 104 SMVAAVAAWPAAVKVGAKAFFAFPFFYHSLNGVRHLFWDAGIGFKNTTVARTGWGVVGLT 163
Query: 116 ILTVL 120
++T L
Sbjct: 164 VVTGL 168
>gi|73666822|ref|YP_302838.1| succinate dehydrogenase subunit C [Ehrlichia canis str. Jake]
gi|72393963|gb|AAZ68240.1| succinate dehydrogenase subunit C [Ehrlichia canis str. Jake]
Length = 136
Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RPLSPHLQIY+ +SI+HR TG ++++G ++ + + + +
Sbjct: 9 MSKVRPLSPHLQIYK--VVYKLSIMHRFTGMLLFVGLFIISWGIIAAFLFPKIIYEIYNF 66
Query: 64 MDGSV-----FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
F++ F++ +H L GIR+L+WD+ CL K I + I++
Sbjct: 67 FSTCYLALYSFKLIAFIWLNIFSYHYLNGIRHLLWDLGFCLTKSAVKVTGIIVVCLCIIS 126
Query: 119 VLIVW 123
I++
Sbjct: 127 SFILY 131
>gi|113868593|ref|YP_727082.1| succinate dehydrogenase (cytochrome b subunit) [Ralstonia eutropha
H16]
gi|113527369|emb|CAJ93714.1| succinate dehydrogenase (cytochrome b subunit) [Ralstonia eutropha
H16]
Length = 136
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
++K RP ++ I YRL VSI+HR++G++++L P V++ F E +
Sbjct: 3 EAVKQARPEYRNIGIAQIARYRLPWAGKVSILHRVSGALMFLLLPFVLYLFEQSITSELS 62
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
+ + G ++ L + W +HH GIR+L+ DV + + K + + A
Sbjct: 63 FAKFSALLSGGFVKLVLLVLIWGYLHHFCAGIRFLLLDVHVGVSKPASAKSAI 115
>gi|171316069|ref|ZP_02905295.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
ambifaria MEX-5]
gi|171098771|gb|EDT43564.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
ambifaria MEX-5]
Length = 138
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 67/129 (51%), Gaps = 7/129 (5%)
Query: 3 SIKNNRPLSPHLQI------YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+++ RP ++ I YR+ +SI+HR++G++++L P ++F F E +
Sbjct: 4 AVRKPRPEYRNIGIGDITLKYRMPLAAILSILHRVSGALLFLFLPFLLFLFDQSLTSELS 63
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIAS 115
+ ++ V ++ + +WA +HH GIR+L+ DV+ + K+ + A + + S
Sbjct: 64 FEVFKAFLSNIVVKLVVLALSWAFLHHFCAGIRHLLMDVNHDAVSKEGGKRTAVVVFVVS 123
Query: 116 ILTVLIVWI 124
I+ + + +
Sbjct: 124 IVLTIAMAL 132
>gi|63253076|dbj|BAA11232.2| cytochrome b-large subunit [Ascaris suum]
Length = 188
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 2/124 (1%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M RP++PHL IY+ T VS +HR+TG + + F + T
Sbjct: 47 MRQRALKRPIAPHLTIYKPQMTWMVSGLHRVTGCAMAGTLLIGGVGFSVLPLDFTTFVEF 106
Query: 61 RCYMDGSVFEV--CLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
+ + F+ + + H L GIR++ +D++ D + A + + + L
Sbjct: 107 IRGLGIPWVILDTFKFIIAFPIAFHTLNGIRFIGFDMAKGTDIPSIYRGAYLVLGLAALI 166
Query: 119 VLIV 122
L V
Sbjct: 167 SLAV 170
>gi|224365626|ref|YP_002608354.1| succinate dehydrogenase subunit 3 [Vitis vinifera]
gi|209954150|emb|CAQ77586.1| succinate dehydrogenase subunit 3 [Vitis vinifera]
gi|239764777|gb|ACS15245.1| succinate dehydrogenase subunit 3 [Vitis vinifera]
Length = 168
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL---SSLRCYM 64
RPLSPHL IY+ T I HRI+G+ +L T V+ F+ C+ G + + +
Sbjct: 66 RPLSPHLPIYKPQLTSTFPIYHRISGA--FLATLVLFFYLLCLKIGLICFTYENFYQFFF 123
Query: 65 DGSVFEVCLFLYT-WAVIHHMLGGIRYLIWDVSLCL 99
S + T A+ +H+ G+R+L+ D S L
Sbjct: 124 FSSKLILISVGITALALSYHLYNGVRHLLTDFSGFL 159
>gi|225023987|ref|ZP_03713179.1| hypothetical protein EIKCOROL_00854 [Eikenella corrodens ATCC
23834]
gi|224943012|gb|EEG24221.1| hypothetical protein EIKCOROL_00854 [Eikenella corrodens ATCC
23834]
Length = 125
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
NRP+ + RL VSI+HRI+G ++++ P++++ + S R ++
Sbjct: 3 TTNRPIFLDIISIRLPIPGIVSILHRISGVLLFISLPLLLWLLAGTLDNAAAFESYRAFV 62
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ ++ L WA +HH GIR+L D L A AK + +++ I+ +
Sbjct: 63 AHPLVKIGLIGLLWAYLHHFFAGIRFLFLDAHKGLALNTARTTAKTVMALALICTAILGV 122
>gi|215919176|ref|NP_820388.2| succinate dehydrogenase cytochrome b556 subunit [Coxiella burnetii
RSA 493]
gi|206584060|gb|AAO90902.2| succinate dehydrogenase cytochrome b556 subunit [Coxiella burnetii
RSA 493]
Length = 165
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 3/126 (2%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL- 60
+ RP++ L + P +SI HRI+G V++L P++ + + L
Sbjct: 39 KGMNAKRPVNLDLTKFHFPPMAILSIGHRISGFVLFLCMPLMFYLLHRATASAESFYHLH 98
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + ++ +++ A + H+ GIR+L D+ A + S + ++
Sbjct: 99 QLLLHNGWIKLAVWIMLSATLFHLFAGIRHLAMDLGFWESVPEGRISAYTVFVVSFIAIV 158
Query: 121 I--VWI 124
+ VWI
Sbjct: 159 LAGVWI 164
>gi|261187750|ref|XP_002620293.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
dermatitidis SLH14081]
gi|239593506|gb|EEQ76087.1| succinate dehydrogenase cytochrome b560 subunit [Ajellomyces
dermatitidis SLH14081]
Length = 188
Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT-PVVVFWFFCIANGEHTLSS 59
+ + NRP+SP+L IYR T +SI+HR TG +V G + G H S+
Sbjct: 46 LRKQRLNRPISPNLTIYRPQVTSVLSILHRNTGLLVSGGFYLFFAVYLASPWLGWHIDSA 105
Query: 60 LRCYMDGSVFEVCLFLY----TWAVIHHMLGGIRYLIW 93
G++ L H G+R+LIW
Sbjct: 106 SMAASFGALPVAAKVLLRTTVALPFTFHSFNGVRHLIW 143
>gi|73542011|ref|YP_296531.1| succinate dehydrogenase subunit C [Ralstonia eutropha JMP134]
gi|72119424|gb|AAZ61687.1| succinate dehydrogenase subunit C [Ralstonia eutropha JMP134]
Length = 136
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
++ RP ++ I YRL VSI+HR++G++++L P V++ F E +
Sbjct: 3 EAVNKARPEFRNIGISQIAKYRLPWAGKVSILHRVSGAMMFLLLPFVLYLFEQSITSELS 62
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
+ + G ++ + W +HH GIR+L+ DV + + K + + A
Sbjct: 63 FAKFSALLSGGFVKLVVLALIWGYLHHFCAGIRFLLLDVHVGVSKPASAKSAI 115
>gi|321465564|gb|EFX76564.1| hypothetical protein DAPPUDRAFT_36257 [Daphnia pulex]
Length = 126
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVF--WFFCIANGEHTLSS 59
+ + RPLS HL I++L M +S+ HR TG ++ G P + + + L
Sbjct: 4 KNRRLKRPLSAHLSIHKLQNNMIISMTHRFTGVIL-CGIPFGLATVAILLPESYPYYLEI 62
Query: 60 LRCY-MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
L C + + FL H L GIR+LIWD+ L K +
Sbjct: 63 LECMNLSRFMITTGKFLVVLPFSFHYLNGIRHLIWDLGYWLTIKEVDRSGY 113
>gi|262369422|ref|ZP_06062750.1| succinate dehydrogenase cytochrome b556 subunit [Acinetobacter
johnsonii SH046]
gi|262315490|gb|EEY96529.1| succinate dehydrogenase cytochrome b556 subunit [Acinetobacter
johnsonii SH046]
Length = 132
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 69/131 (52%), Gaps = 6/131 (4%)
Query: 1 MSSIKNNRPLSP----HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP++ L++ P SI+HR++G +V+L PV+++ +
Sbjct: 1 MPAVKSNRPVNLSMGQVLEVNLKSPVAIASILHRLSGVIVFLLVPVLLWILDKSLSSPEG 60
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ ++ + + ++++ +I H + G+++L+ D+ + + + A I++I S
Sbjct: 61 FAQVQAIFNSFIVRFVVWVFVAGLIFHFIAGVKHLLADIGIAEELQSGRIAATISLILSA 120
Query: 117 LTVLI--VWII 125
+ ++ VWI+
Sbjct: 121 IGIVAAFVWIV 131
>gi|330804873|ref|XP_003290414.1| hypothetical protein DICPUDRAFT_98679 [Dictyostelium purpureum]
gi|325079465|gb|EGC33064.1| hypothetical protein DICPUDRAFT_98679 [Dictyostelium purpureum]
Length = 193
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 1/117 (0%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
+P SPH+ IYR +SI+HR+TG + LG V +
Sbjct: 71 KQPTSPHVLIYRFPLPAVMSILHRVTGVFLGLGLFGVCSTALFAPQDVTVYIDMLKTNYP 130
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWD-VSLCLDKKIATQMAKINIIASILTVLIV 122
+ F + + +H GIR+L WD + +A KI I + I
Sbjct: 131 LLVYPAKFCIAFPLAYHTSTGIRHLFWDETQKGITTPLAESTCKIIIGIVSVATFIF 187
>gi|294011057|ref|YP_003544517.1| succinate dehydrogenase/fumarate reductase cytochrome b subunit
[Sphingobium japonicum UT26S]
gi|292674387|dbj|BAI95905.1| succinate dehydrogenase/fumarate reductase cytochrome b subunit
[Sphingobium japonicum UT26S]
Length = 110
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 23 MFVSIVHRITGSVVY-LGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVI 81
M VSI+HR+TG+ + G +V+W A G ++ + + + +W
Sbjct: 1 MAVSIMHRVTGNGLATAGALGLVWWLMAAAMGPEAYATFVACATSPIGYLVMAGLSWFFF 60
Query: 82 HHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
H+ G+R+ + D+ + K + + S L + W
Sbjct: 61 QHLCSGLRHFVLDMGAGYELKSNKSWSLLTFALSTLLTIGFWA 103
>gi|289209041|ref|YP_003461107.1| succinate dehydrogenase, cytochrome b556 subunit [Thioalkalivibrio
sp. K90mix]
gi|288944672|gb|ADC72371.1| succinate dehydrogenase, cytochrome b556 subunit [Thioalkalivibrio
sp. K90mix]
Length = 126
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 57/117 (48%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RP+ L+ RL VSI+HRITG + L PV+++ + + +
Sbjct: 6 RPVFLDLRKIRLPLNAVVSILHRITGIFLILSIPVLLWLLDRSLASPEGFAQVAAIIGHP 65
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
V L + W ++HH+ GIR+L+ + + D+ + + A+ + A+I L VW+
Sbjct: 66 VGLALLLIGLWWLLHHLFAGIRFLLMEFGIGEDRAGSLRTARDALYAAIFATLAVWL 122
>gi|198456405|ref|XP_002136333.1| GA27966 [Drosophila pseudoobscura pseudoobscura]
gi|198142684|gb|EDY71408.1| GA27966 [Drosophila pseudoobscura pseudoobscura]
Length = 235
Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV--YLGTPVVVFWFFCIANGEHTLSSL 60
+++ R +SP L IY+ T +SI+ R++G + ++ + F E
Sbjct: 39 NMRLGRVMSPALTIYKKQLTSVLSILLRMSGFALTLFVWGLGLTGLFSKRTLAEWAEKVN 98
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
C + +V F+ + ++H++ G R+LIW + + L K + ++ + +
Sbjct: 99 ECDVRRNVVSGMKFVMIFPFVYHVVAGTRHLIWHLDVFLTKPQIYATGYLAVVLTFVLA 157
>gi|89900590|ref|YP_523061.1| succinate dehydrogenase, cytochrome b subunit [Rhodoferax
ferrireducens T118]
gi|89345327|gb|ABD69530.1| succinate dehydrogenase subunit C [Rhodoferax ferrireducens T118]
Length = 147
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 13 HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM-------D 65
L YR VS +HR++G++++ P V++ F + E +
Sbjct: 22 DLISYRWPLASIVSGMHRVSGAIMFFLMPFVIWMFDNSISSEISFDKFTSAFNVGMLGLP 81
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIASILTVLIV 122
G ++++ WA +HH L GIR+L D K+ A + ++ +I+
Sbjct: 82 GFIWKLVALGLIWAYLHHFLAGIRHLWMDTHHEATTKEFGKSSAAFVMAVTLGLTVIL 139
>gi|310800693|gb|EFQ35586.1| succinate dehydrogenase cytochrome b subunit [Glomerella
graminicola M1.001]
Length = 188
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 14/130 (10%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMF-VSIVHRITGSVV------YLGTPV---VVFWFFCI 50
++ + NRP+SPHL IY++ T F SI RITG + Y GT + ++ W
Sbjct: 57 LAKQRLNRPVSPHLSIYKMEQTWFGASIWTRITGGGLSAAFYVYFGTYLVAPLLGWHVES 116
Query: 51 ANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKI 110
+ +L G + FL W H GIR+L +D+ K + I
Sbjct: 117 QSLVAAFGALPLAAKGGL----KFLVAWPFTFHFFNGIRHLTYDLVKGFTKPEIIRWGWI 172
Query: 111 NIIASILTVL 120
S+++
Sbjct: 173 IWSTSLVSAA 182
>gi|217968584|ref|YP_002353818.1| succinate dehydrogenase, cytochrome b556 subunit [Thauera sp. MZ1T]
gi|217505911|gb|ACK52922.1| succinate dehydrogenase, cytochrome b556 subunit [Thauera sp. MZ1T]
Length = 128
Score = 92.0 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 49/101 (48%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSV 68
P+ +L R SI HR++G ++++ PV+ E +S+R + +
Sbjct: 9 PVFLNLAQIRFPIGAIASIAHRVSGVLLFIALPVLAALLHASLRSEADFASVRGLLSSPL 68
Query: 69 FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
V + WA+ HH+L GIR+L+ DV + + + A A+
Sbjct: 69 SLVVAGVLAWALAHHVLAGIRHLLMDVGIGSELERARASAR 109
>gi|195499931|ref|XP_002097158.1| GE24651 [Drosophila yakuba]
gi|194183259|gb|EDW96870.1| GE24651 [Drosophila yakuba]
Length = 265
Score = 91.7 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT-PVVVFWFFCIANGEHTLSSLR 61
++ R LSPHL IY++ T +S RI+G V+ + V + + E + +
Sbjct: 79 NMLLGRELSPHLSIYKIQLTSTLSAFLRISGFVLSVFVWIVGIGGLCLQGDMEGFIKKVE 138
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + + +H + G R+LIW ++ L +++ SI
Sbjct: 139 QCDCHGMVTMAKVMVVLPFAYHTVAGTRHLIWYLNKFLTIPEIYATGYVSVALSIALAAF 198
Query: 122 VWII 125
+ +
Sbjct: 199 LLAV 202
>gi|58698191|ref|ZP_00373112.1| succinate dehydrogenase, cytochrome b556 subunit [Wolbachia
endosymbiont of Drosophila ananassae]
gi|225630885|ref|YP_002727676.1| succinate dehydrogenase, cytochrome b556 subunit [Wolbachia sp.
wRi]
gi|58535272|gb|EAL59350.1| succinate dehydrogenase, cytochrome b556 subunit [Wolbachia
endosymbiont of Drosophila ananassae]
gi|225592866|gb|ACN95885.1| succinate dehydrogenase, cytochrome b556 subunit [Wolbachia sp.
wRi]
Length = 125
Score = 91.7 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL--SSLRCY 63
++RPLSPHLQIY++ T F SI+HR+TG +++L ++ ++F L L
Sbjct: 2 SDRPLSPHLQIYKVQVTSFFSIMHRLTGILLFLLLMILSWYFILHVYFPELLIVRYLNAL 61
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
+ V ++ L + ++H L GIR+L+WD L L+ ++ A
Sbjct: 62 LFTPVAKLAYVLCFISFVYHFLNGIRHLLWDAGLNLEITGVSRSAI 107
>gi|194290224|ref|YP_002006131.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
sdhd [Cupriavidus taiwanensis LMG 19424]
gi|193224059|emb|CAQ70068.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhD [Cupriavidus taiwanensis LMG 19424]
Length = 136
Score = 91.7 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
++K RP ++ I YRL VSI+HR++G++++L P V++ F E +
Sbjct: 3 EAVKQARPEFRNIGISQIAKYRLPWAGKVSILHRVSGALMFLLLPFVLYLFEQSITSELS 62
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
+ + G ++ + W +HH GIR+L+ DV + + K + + A
Sbjct: 63 FAKFSALLSGGFVKLVVLALIWGYLHHFCAGIRFLLLDVHVGVSKPASAKSAI 115
>gi|91777242|ref|YP_552450.1| succinate dehydrogenase subunit C [Burkholderia xenovorans LB400]
gi|91689902|gb|ABE33100.1| succinate dehydrogenase subunit C [Burkholderia xenovorans LB400]
Length = 137
Score = 91.7 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 2 SSIKNNRPLSPH------LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
++K RP + L YRL VSI+HR++G ++++ P +++ F E
Sbjct: 3 EAVKKPRPEFRNIGIGQILTAYRLPLAGRVSILHRLSGGLLFVFLPFLLYLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ + ++ + ++ + WA + H GIR+L+ D + K+ Q + + ++ S
Sbjct: 63 SFEVFKGFLSNIIVKLITLVLAWAFLFHFCAGIRHLVMDTHRAVTKEGGKQTSVVVLVVS 122
Query: 116 ILTVLIVWI 124
L + +
Sbjct: 123 SLLTIAFAL 131
>gi|171693117|ref|XP_001911483.1| hypothetical protein [Podospora anserina S mat+]
gi|170946507|emb|CAP73308.1| unnamed protein product [Podospora anserina S mat+]
Length = 184
Score = 91.7 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 6/126 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFV-SIVHRITGSVVY-----LGTPVVVFWFFCIANGE 54
+ + + NRP+SPHL IY T F SI R TGS + G +
Sbjct: 53 LDAQRLNRPVSPHLDIYDKQQTFFGGSIWQRFTGSGLSGGLYVFGAAYLAAPLLGWHLES 112
Query: 55 HTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
+L S + +V FL W H G+R+L D+ + + ++ + A
Sbjct: 113 ASLVSAFGALPFAVKSGVKFLVAWPFAFHAFNGVRHLALDLGMFMKRQQIVKGGWYIWGA 172
Query: 115 SILTVL 120
S+++ L
Sbjct: 173 SLVSGL 178
>gi|262375851|ref|ZP_06069083.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
lwoffii SH145]
gi|262309454|gb|EEY90585.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
lwoffii SH145]
Length = 132
Score = 91.7 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 69/131 (52%), Gaps = 6/131 (4%)
Query: 1 MSSIKNNRPLSP----HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP++ L++ P SI+HR++G +V+L PV+++ +
Sbjct: 1 MPAVKSNRPVNLSMGQVLEVNLKSPVAIASILHRLSGVIVFLLVPVLLWILDKSLSSPEG 60
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ ++ +G + ++++ +I H + G+++L+ D+ + + + + I +I S
Sbjct: 61 FAQVQEIFNGFIVRFIVWVFVAGMIFHFIAGVKHLLADIGVAEELESGRVASTIALILSA 120
Query: 117 LTVLI--VWII 125
+ ++ VWI+
Sbjct: 121 IGIVAAFVWIV 131
>gi|198455255|ref|XP_002138037.1| GA26173 [Drosophila pseudoobscura pseudoobscura]
gi|198133166|gb|EDY68595.1| GA26173 [Drosophila pseudoobscura pseudoobscura]
Length = 332
Score = 91.7 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV--YLGTPVVVFWFFCIANGEHTLSSL 60
+++ R +SP L IY+ T +SI+ R++G + ++ + F E
Sbjct: 136 NMRLGRVMSPALTIYKKQLTSVLSILLRMSGFALTLFVWGLGLTGLFSKRTLAEWAEKVN 195
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
C + +V F+ + ++H++ G R+LIW + + L K + ++ + +
Sbjct: 196 ECDVRRNVVSGMKFVMIFPFVYHVVAGTRHLIWHLDVFLTKPQIYATGYLAVVLTFVLA 254
>gi|94311422|ref|YP_584632.1| succinate dehydrogenase subunit C [Cupriavidus metallidurans CH34]
gi|93355274|gb|ABF09363.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Cupriavidus metallidurans CH34]
Length = 136
Score = 91.7 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 2 SSIKNNRPLSPHLQI-----YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
++K RP ++ I YRL VSI+HR++G++++L P V++ F E +
Sbjct: 3 EAVKQARPEFRNIGIAQISRYRLPWAGKVSILHRVSGAMMFLLLPFVLYLFEQSVTSELS 62
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ + +V + W +HH GIR+L+ DV + + K + + A
Sbjct: 63 FAKFSALLSNGFIKVVILALIWGYLHHFCAGIRFLLLDVHVGVTKPASAKSA 114
>gi|258563078|ref|XP_002582284.1| predicted protein [Uncinocarpus reesii 1704]
gi|237907791|gb|EEP82192.1| predicted protein [Uncinocarpus reesii 1704]
Length = 221
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 53/127 (41%), Gaps = 5/127 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV-----YLGTPVVVFWFFCIANGEH 55
+++ + RP++PH+ IY+ + +S + R+TG G V+ +
Sbjct: 91 LAAQRLKRPVAPHIAIYKWQISAVLSSLERLTGMAFSGGLYLFGIAYVLSPYLGWGLSAA 150
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
++++ + + F W + H L G++ ++W L + + + + A+
Sbjct: 151 SMATAFGALPLAAKVAAKFTIAWPFVFHCLNGVKCVVWSSGKFLTNQGVKKTGMLTVGAA 210
Query: 116 ILTVLIV 122
+ + +
Sbjct: 211 TIGAIAL 217
>gi|209363838|ref|YP_001423999.2| succinate dehydrogenase cytochrome b556 subunit [Coxiella burnetii
Dugway 5J108-111]
gi|207081771|gb|ABS76846.2| succinate dehydrogenase cytochrome b556 subunit [Coxiella burnetii
Dugway 5J108-111]
Length = 165
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 3/126 (2%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL- 60
+ RP++ L + P +SI HRI+G V++L P++ + + L
Sbjct: 39 KGMNATRPVNLDLTKFHFPPMAILSIGHRISGFVLFLCMPLMFYLLHQATASAESFYHLH 98
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + ++ +++ A + H+ GIR+L D+ A + S + ++
Sbjct: 99 QLLLHNGWIKLAVWIMLSATLFHLFAGIRHLAMDLGFWESVPEGRISAYTVFVVSFIAIV 158
Query: 121 I--VWI 124
+ VWI
Sbjct: 159 LAGVWI 164
>gi|42521018|ref|NP_966933.1| succinate dehydrogenase, cytochrome b556 subunit [Wolbachia
endosymbiont of Drosophila melanogaster]
gi|42410759|gb|AAS14867.1| succinate dehydrogenase, cytochrome b556 subunit [Wolbachia
endosymbiont of Drosophila melanogaster]
Length = 125
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL--SSLRCY 63
++RPLSPHLQIY++ T F SI+HR+TG +++L ++ ++F L L
Sbjct: 2 SDRPLSPHLQIYKVQVTSFFSIMHRLTGILLFLLLMILSWYFILHVYFPELLIVRYLNAL 61
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
+ V ++ L + ++H L GIR+L+WDV L L+ ++ A
Sbjct: 62 LFTPVAKLAYVLCFISFVYHFLNGIRHLLWDVGLNLEITGVSRSAI 107
>gi|195157702|ref|XP_002019735.1| GL12050 [Drosophila persimilis]
gi|194116326|gb|EDW38369.1| GL12050 [Drosophila persimilis]
Length = 307
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV--YLGTPVVVFWFFCIANGEHTLSSL 60
+++ R +SP L IY+ T +SI+ R++G + ++ + F E
Sbjct: 111 NMRLGRVMSPALTIYKKQLTSVLSILLRMSGFALTLFVWGLGLTGLFSKRTLAEWAEKVN 170
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
C + +V F+ + ++H++ G R+LIW + + L K + ++ + +
Sbjct: 171 ECDVRRNVVSGMKFVMIFPFVYHVVAGTRHLIWHLDVFLTKPQIYATGYLAVVLTFVLA 229
>gi|194902150|ref|XP_001980612.1| GG17249 [Drosophila erecta]
gi|190652315|gb|EDV49570.1| GG17249 [Drosophila erecta]
Length = 269
Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 1/124 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT-PVVVFWFFCIANGEHTLSSLR 61
++ R LSPHL IY++ T +S RI+G + + V + + E + +
Sbjct: 79 NMLLGRELSPHLSIYKIQLTSTLSAFLRISGFALSVFVWIVGIGGLCLQGDMEGFIKKVE 138
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + + +H + G R+LIW ++ L + + SI
Sbjct: 139 QCDCHGMVTMAKLMVVMPFAYHTVAGTRHLIWYLNKFLTIPEIYATGYVAVALSIALAAF 198
Query: 122 VWII 125
+ +
Sbjct: 199 LLAV 202
>gi|160872194|ref|ZP_02062326.1| succinate dehydrogenase, cytochrome b556 subunit [Rickettsiella
grylli]
gi|159120993|gb|EDP46331.1| succinate dehydrogenase, cytochrome b556 subunit [Rickettsiella
grylli]
Length = 123
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 57/119 (47%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
+ RP++ +L R T VSI+HR++G +++L PV + ++ +
Sbjct: 2 SKRPINLNLLTIRFPMTAIVSILHRLSGFLLFLAIPVFLMLMTLTLQSPEAFFTVHVCFE 61
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ ++ L + A+ +H+ GIR+L D + K A A ++A+++ ++ I
Sbjct: 62 HPLMKLFLLGFLAALFYHLFAGIRHLFMDAGVADTLKSAQWTAGFVMVATLVLTSLMGI 120
>gi|56479264|ref|YP_160853.1| succinate dehydrogenase cytochrome b-556 subunit [Aromatoleum
aromaticum EbN1]
gi|56315307|emb|CAI09952.1| Succinate dehydrogenase cytochrome b-556 subunit (EC 1.3.99.1)
[Aromatoleum aromaticum EbN1]
Length = 129
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 62/121 (51%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
++ RP L RL FVSI+HR++G+ ++L P ++F F + + +
Sbjct: 6 VRKQRPKFLALHEIRLPLPGFVSILHRVSGAGLFLMLPFLLFLFDRSLGSPESFETYKSV 65
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + ++ L WA +HH GIR+L+ D++ D K A ++I ++ SI +I+
Sbjct: 66 VANPLAKLLLLGLLWAYLHHFCAGIRFLLLDLNKGTDLKSARNSSRIVLVVSIALTIIIG 125
Query: 124 I 124
+
Sbjct: 126 V 126
>gi|261856937|ref|YP_003264220.1| succinate dehydrogenase, cytochrome b556 subunit [Halothiobacillus
neapolitanus c2]
gi|261837406|gb|ACX97173.1| succinate dehydrogenase, cytochrome b556 subunit [Halothiobacillus
neapolitanus c2]
Length = 124
Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 65/122 (53%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ +RP+S +L +L VSI+HRI+G+ ++L PV+++ F + ++ +
Sbjct: 1 MAGSRPVSLNLLKIKLPLPGIVSIMHRISGAFLFLLLPVLLYVFQLSLGSAEGFAEVQSW 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
V ++ L + WA +HH G+RYL D+ + + A AK+ ++ SI L++
Sbjct: 61 FHSPVAKLALLVVVWAYLHHFCMGLRYLALDLDIGVHLAQARFTAKLVLVVSIALTLLIG 120
Query: 124 II 125
++
Sbjct: 121 VL 122
>gi|39940728|ref|XP_359901.1| hypothetical protein MGG_04876 [Magnaporthe oryzae 70-15]
gi|145010897|gb|EDJ95553.1| hypothetical protein MGG_04876 [Magnaporthe oryzae 70-15]
Length = 184
Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFV-SIVHRITGSVVYLGTPVV-VFWFFCIANGEH--- 55
++ + RP+SPHLQIY T S+ RITGS++ G V + G H
Sbjct: 53 LAEQRLKRPVSPHLQIYDYRQTWLSGSVWQRITGSLLTGGLYVFGAAYLVAPLTGWHLET 112
Query: 56 -TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
++++ FL W H + G+R+L+WD +L +K + + +
Sbjct: 113 TSMAAAVAAWPAFAKGGLKFLIAWPFTQHAIAGVRHLVWDFALGFNKPTIAKTTNVLWVT 172
Query: 115 SILTVL 120
IL+
Sbjct: 173 GILSAA 178
>gi|212212228|ref|YP_002303164.1| succinate dehydrogenase cytochrome b556 subunit [Coxiella burnetii
CbuG_Q212]
gi|212010638|gb|ACJ18019.1| succinate dehydrogenase cytochrome b556 subunit [Coxiella burnetii
CbuG_Q212]
Length = 165
Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 3/126 (2%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL- 60
+ RP++ L + P +SI HRI+G V++L P++ + + L
Sbjct: 39 KGMNATRPVNLDLTKFHFPPMAILSIGHRISGFVLFLCMPLMFYLLHRATASAESFYHLH 98
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + ++ +++ A + H+ GIR+L D+ A + S + ++
Sbjct: 99 QLLLHNGWIKLAVWIMLSATLFHLFAGIRHLAMDLGFWESVPEGRISAYTVFVVSFIAIV 158
Query: 121 I--VWI 124
+ VWI
Sbjct: 159 LAGVWI 164
>gi|324520449|gb|ADY47640.1| Succinate dehydrogenase cytochrome b560 subunit [Ascaris suum]
Length = 142
Score = 90.5 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 2/124 (1%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M RP++PHL IY+ T VS +HR+TG + + F + T
Sbjct: 1 MRQRALKRPIAPHLTIYKPQMTWMVSGLHRVTGCAMAGTLLIGGVGFSVLPLDFTTFVEF 60
Query: 61 RCYMDGSVFEV--CLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
+ + F+ + + H L GIR++ +D++ D + A + + + L
Sbjct: 61 IRGLGIPWVILDTFKFIIAFPIAFHTLNGIRFIGFDMAKGTDIPSIYRGAYLVLGLAALI 120
Query: 119 VLIV 122
L V
Sbjct: 121 SLAV 124
>gi|324518019|gb|ADY46982.1| Succinate dehydrogenase cytochrome b560 subunit [Ascaris suum]
Length = 150
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 2/124 (1%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
M RP++PHL IY+ T VS +HR+TG + + F + T
Sbjct: 9 MRQRALKRPIAPHLTIYKPQMTWMVSGLHRVTGCAMAGTLLIGGVGFSVLPLDFTTFVEF 68
Query: 61 RCYMDGSVFEV--CLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
+ + F+ + + H L GIR++ +D++ D + A + + + L
Sbjct: 69 IRGLGIPWVILDTFKFIIAFPIAFHTLNGIRFIGFDMAKGTDIPSIYRGAYLVLGLAALI 128
Query: 119 VLIV 122
L V
Sbjct: 129 SLAV 132
>gi|167583942|ref|ZP_02376330.1| Succinate dehydrogenase, cytochrome b subunit [Burkholderia
ubonensis Bu]
Length = 138
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 3 SIKNNRPLSPHLQ------IYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
+++ RP ++ YRL VSI+HR++G++++L P ++F F E +
Sbjct: 4 AVRKPRPEYRNIGFGDITMKYRLPLAAKVSILHRVSGALLFLFLPFLLFLFDQSLTSELS 63
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIAS 115
+ ++ + ++ + +WA H GIR+L+ D++ + K+ + + I S
Sbjct: 64 FEGFKFFLSNVIVKLIVLALSWAFFLHFCAGIRHLLMDINHDAVTKERGKSTSVVVIAVS 123
Query: 116 ILTVLIVWI 124
L + + +
Sbjct: 124 SLLTVAMAL 132
>gi|94496886|ref|ZP_01303460.1| hypothetical protein SKA58_12557 [Sphingomonas sp. SKA58]
gi|94423562|gb|EAT08589.1| hypothetical protein SKA58_12557 [Sphingomonas sp. SKA58]
Length = 111
Score = 90.5 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Query: 23 MFVSIVHRITGSVVY-LGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVI 81
M VSI+HR+TG+ + +G +V+W A G ++ + + + +W
Sbjct: 1 MAVSIMHRVTGNGLATVGALGLVWWLMAAAIGPEAYATFVSCATSPIGYLVMIGLSWFFF 60
Query: 82 HHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
H+ G+R+ + D+ + + + +A ++ W
Sbjct: 61 QHLCSGLRHFVLDMGAGYELRTNKSWSIGVFLAGAALTILFWA 103
>gi|315126699|ref|YP_004068702.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
sdhD [Pseudoalteromonas sp. SM9913]
gi|315015213|gb|ADT68551.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
sdhD [Pseudoalteromonas sp. SM9913]
Length = 110
Score = 90.5 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 48/106 (45%)
Query: 19 LIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTW 78
+ T SI HR+TG ++ V++ + + ++ +G + + +
Sbjct: 1 MPATAKASIFHRVTGVALFFALTFVIWAWSESLSSAEGFEFVKSLFNGFIAKFIAWGTLS 60
Query: 79 AVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ +H++GGIR++I D+ + + AKI + ++ ++ +
Sbjct: 61 VLGYHLIGGIRHIIMDMGHWEELESGNTSAKIAMALGVVFAVLAGV 106
>gi|119186307|ref|XP_001243760.1| hypothetical protein CIMG_03201 [Coccidioides immitis RS]
Length = 205
Score = 90.1 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV-----YLGTPVVVFWFFCIANGEH 55
+++ + NRP+SPHL IY+ T VS + R+TG ++ GT VV +
Sbjct: 75 LAAQRLNRPVSPHLSIYKFQITSVVSSLERLTGMMLSGGLYLFGTAYVVSPYLGWDLSSA 134
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+L++ + + F W + H L G +Y++W L+ K Q
Sbjct: 135 SLAAAFGALPFAAKAAAKFSIAWPFLFHCLNGTKYMVWSWGKLLNNKAVIQAG 187
>gi|221203641|ref|ZP_03576659.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
multivorans CGD2]
gi|221175807|gb|EEE08236.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
multivorans CGD2]
Length = 117
Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YRL +SI+HR++G++++L P ++F F E + + ++ V ++ + +
Sbjct: 3 YRLPLAAKLSILHRVSGALLFLFLPFLLFLFDQSLTSELSFEVFKAFLSNIVVKLIVLVL 62
Query: 77 TWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIASILTVLIVWI 124
+WA HH GIR+L+ DV+ + K+ + A + + SI + + +
Sbjct: 63 SWAFFHHFCAGIRHLLMDVNHDAVSKEGGKRTAVVVFVVSIALTIAMAL 111
>gi|90406983|ref|ZP_01215173.1| succinate dehydrogenase cytochrome b556 subunit [Psychromonas sp.
CNPT3]
gi|90311854|gb|EAS39949.1| succinate dehydrogenase cytochrome b556 subunit [Psychromonas sp.
CNPT3]
Length = 124
Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ NRP + L + T SI+HR++G +V++ + +F + + Y
Sbjct: 1 MHKNRPKNLDLATVKFPITATASILHRVSGIIVFISLAIFMFLLNLSLSSALGFHQVLGY 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK----INIIASILTV 119
D E ++ + +HM+ G+R++I D+ + + A+ A+ + I S+L
Sbjct: 61 FDNLFIEFIMWGALTGLAYHMVFGVRHMIQDLGFWEEMESASTSARYGFVLTFILSVLAG 120
Query: 120 LIVW 123
++VW
Sbjct: 121 VLVW 124
>gi|21356401|ref|NP_650041.1| CG6629 [Drosophila melanogaster]
gi|7299395|gb|AAF54585.1| CG6629 [Drosophila melanogaster]
gi|19527967|gb|AAL90098.1| AT18465p [Drosophila melanogaster]
gi|220949652|gb|ACL87369.1| CG6629-PA [synthetic construct]
gi|220958876|gb|ACL91981.1| CG6629-PA [synthetic construct]
Length = 261
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSLR 61
++ R LSPHL IY++ T +S RI+G V+ + V + + E + +
Sbjct: 79 NMLLGRQLSPHLSIYKIQLTSTLSAFLRISGFVLAVFVWFVGISGLCLQGDMEGFIKKVE 138
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + + T +H + G R+LIW ++ L + + +I
Sbjct: 139 KCDCHGMVTMAKVMVTMPFAYHTVAGTRHLIWYLNKFLTIPEIYATGYVAVALTIALSAF 198
Query: 122 VWIIK 126
+ +K
Sbjct: 199 LLAVK 203
>gi|288941679|ref|YP_003443919.1| succinate dehydrogenase, cytochrome b556 subunit [Allochromatium
vinosum DSM 180]
gi|288897051|gb|ADC62887.1| succinate dehydrogenase, cytochrome b556 subunit [Allochromatium
vinosum DSM 180]
Length = 128
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 67/126 (53%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RP+ L +L + VSI+HR++G ++ L P+V F + ++
Sbjct: 1 MTTPRPVFLDLLRIKLPLSGIVSILHRVSGVLMVLTIPIVAILFHQALSSPEGFAATAAV 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+D + ++ L WA+ HH++ GIR+L D + LD+ +A + A++ + A+ + +++
Sbjct: 61 LDTWLIKLVLLGLLWALFHHLVAGIRHLFLDYGVGLDRAMARETARLTLYAAPVLLVLSI 120
Query: 124 IIKDIV 129
I+ ++
Sbjct: 121 ILSFLL 126
>gi|212219000|ref|YP_002305787.1| succinate dehydrogenase cytochrome b556 subunit [Coxiella burnetii
CbuK_Q154]
gi|212013262|gb|ACJ20642.1| succinate dehydrogenase cytochrome b556 subunit [Coxiella burnetii
CbuK_Q154]
Length = 165
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 3/126 (2%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL- 60
+ RP++ L + P +SI HRI+G V++L P++ + + L
Sbjct: 39 KGMNATRPVNLDLTKFHFPPMAILSIGHRISGFVLFLCMPLMFYLLHRATASVESFYHLH 98
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + ++ +++ A + H+ GIR+L D+ A + S + ++
Sbjct: 99 QLLLHNGWIKLAVWIMLSATLFHLFAGIRHLAMDLGFWESVPEGRISAYTVFVVSFIAIV 158
Query: 121 I--VWI 124
+ VWI
Sbjct: 159 LAGVWI 164
>gi|330991156|ref|ZP_08315109.1| Succinate dehydrogenase cytochrome b556 subunit [Gluconacetobacter
sp. SXCC-1]
gi|329761742|gb|EGG78233.1| Succinate dehydrogenase cytochrome b556 subunit [Gluconacetobacter
sp. SXCC-1]
Length = 130
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 57/113 (50%)
Query: 10 LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVF 69
+SPHLQ+YR +MF+SI +R G G+ + + W A G + S ++ +
Sbjct: 1 MSPHLQVYRFRLSMFLSIANRAAGVAAAGGSALGLCWISAAAKGPKSFSKVQKVTGNPLG 60
Query: 70 EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
++ L + A+++H + G+R+L WD KK + + + ++ T L +
Sbjct: 61 QLLLAGWALALVYHFVAGLRHLAWDSGYRFSKKEINEDGPVAVGVTLGTTLAL 113
>gi|270157618|ref|ZP_06186275.1| succinate dehydrogenase, cytochrome b556 subunit [Legionella
longbeachae D-4968]
gi|289164009|ref|YP_003454147.1| succinate dehydrogenase, cytochrome b556 subunit [Legionella
longbeachae NSW150]
gi|269989643|gb|EEZ95897.1| succinate dehydrogenase, cytochrome b556 subunit [Legionella
longbeachae D-4968]
gi|288857182|emb|CBJ11000.1| succinate dehydrogenase, cytochrome b556 subunit [Legionella
longbeachae NSW150]
Length = 124
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 50/110 (45%)
Query: 13 HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVC 72
L T +SI+HRI+G ++L P +++ N + + + V ++
Sbjct: 10 DLLTISYPFTAIISILHRISGVFLFLLIPFLLWMLETATNSPDGFTYIYAVLANPVAKLI 69
Query: 73 LFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
L+ A +H+L GIR+L+ D+ + K A + I +++ + +
Sbjct: 70 LWCMLVAFWYHLLAGIRHLLMDIGIGEGLKSARFTGGVTIALTLIVAIFI 119
>gi|115721219|ref|XP_001188484.1| PREDICTED: similar to LOC496650 protein, partial
[Strongylocentrotus purpuratus]
gi|115803641|ref|XP_782812.2| PREDICTED: similar to LOC496650 protein, partial
[Strongylocentrotus purpuratus]
Length = 116
Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT-PVVVFWFFCIANGEHTLSSL 60
++ + NRP+SPHL IY T +SI HR TG + +G + + + H L +
Sbjct: 25 TNKRLNRPMSPHLTIYSPQVTSMLSITHRGTGVGLTVGIYALGLSMSVLPHDFAHYLEMI 84
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYL 91
+ G + + W V H L G+R+L
Sbjct: 85 KALSFGPSLLFLTKMAIVWPVAFHSLNGVRHL 116
>gi|332219329|ref|XP_003258809.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like isoform 2 [Nomascus leucogenys]
Length = 135
Score = 89.3 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Query: 11 SPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSLRCYMDGS-V 68
SP L I M +SI HR TG + G + + N E L ++ G +
Sbjct: 19 SPQLCIRNWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPAL 78
Query: 69 FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
F + +++H GIR+L+WD+ L Q
Sbjct: 79 IHTAKFALVFPLMYHTWNGIRHLVWDLGKGLKIPQLYQSG 118
>gi|224009964|ref|XP_002293940.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970612|gb|EED88949.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 191
Score = 89.0 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 8/128 (6%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
K RP+SPH+ IY SI R+TG ++ G + +G LS+++C
Sbjct: 65 KTRRPVSPHVTIYSFPVCALSSIATRVTGCILSFGAAGLGIVEIFGGSG-AALSTMQCIG 123
Query: 65 DG------SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIASIL 117
G F + +H LGG+R+L+WD S L + + + AS+L
Sbjct: 124 SGEMVGGALFVAGAKFSVAFPFAYHYLGGLRHLVWDNSPEMLTNVDVEKASYGLLGASVL 183
Query: 118 TVLIVWII 125
+ ++
Sbjct: 184 LSSVAAVV 191
>gi|169615981|ref|XP_001801406.1| hypothetical protein SNOG_11157 [Phaeosphaeria nodorum SN15]
gi|111060536|gb|EAT81656.1| hypothetical protein SNOG_11157 [Phaeosphaeria nodorum SN15]
Length = 174
Score = 89.0 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 5/125 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHR-----ITGSVVYLGTPVVVFWFFCIANGEH 55
+ + NRP+SPHL IYR T + S ++R ITGS G + +
Sbjct: 44 LVKQRINRPVSPHLSIYRPQITWYSSGLYRLTAVIITGSFYLWGFAYLAAPYTGWHLETQ 103
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
++ + +V + H GIR+L+WD + + + I +
Sbjct: 104 SMVAAVAAWPAAVKIGVKSFFALPFFFHAYQGIRHLVWDFGIGMKNAAVIKSGWTAIALT 163
Query: 116 ILTVL 120
++
Sbjct: 164 FISTF 168
>gi|111073627|emb|CAL29489.1| SdhC; succinate dehydrogenase b-type cytochrome subunit [Wolbachia
endosymbiont of Onchocerca volvulus]
Length = 125
Score = 89.0 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL--SSLRCY 63
++RPLSPHLQIY++ T SI+HR+TG +++L ++ ++F L
Sbjct: 2 SDRPLSPHLQIYKIQITNLFSIIHRLTGILLFLLLVMLSWYFILHVYFPKLFIVKYLNVL 61
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + ++ L ++H GIR+L+WDV L ++ A + + +L +
Sbjct: 62 LSTPIAKLAYVLCFIGFLYHFFNGIRHLLWDVGFNLRITDVSKSAILLTVMLLLFTMAF 120
>gi|186920110|ref|YP_001874764.1| succinate:cytochrome c oxidoreductase subunit 4 [Hemiselmis
andersenii]
gi|186461056|gb|ACC78218.1| succinate:cytochrome c oxidoreductase subunit 4 [Hemiselmis
andersenii]
Length = 142
Score = 89.0 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL-----SSL 60
NRPLSPHL +Y+ T FVSI HRI+GS++ L V+ F F+ +
Sbjct: 19 TNRPLSPHLYLYKAQLTSFVSIFHRISGSILSLSFIVLAFVFYLDVLFSEHYILYCLGLV 78
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN 111
F +L H+ G+R+LIWD+ L LD K +
Sbjct: 79 LETYGYWFFISLSYLLLTFFCLHVFNGMRHLIWDLGLGLDVKNVYITGSVV 129
>gi|124267357|ref|YP_001021361.1| succinate dehydrogenase subunit C [Methylibium petroleiphilum PM1]
gi|124260132|gb|ABM95126.1| succinate dehydrogenase subunit C [Methylibium petroleiphilum PM1]
Length = 146
Score = 88.6 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 14/121 (11%)
Query: 2 SSIKNNRPLSPHLQI-------YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE 54
+++K RP H I YRL P VSI+HRI+G++++L P +V+ F + E
Sbjct: 4 TTVKAGRPRPVHRNIHVSQIIGYRLPPAGIVSILHRISGAIMFLLLPFIVWLFDTSLSSE 63
Query: 55 HTLSSLR-------CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQM 107
+ + ++ G ++ WA + H + G+R+L DV+ + K+ +
Sbjct: 64 ISYETFTSAFVAGIGFVPGWFVKLVALALIWAYLLHFIAGVRHLWMDVTHAVSKEAGHRS 123
Query: 108 A 108
A
Sbjct: 124 A 124
>gi|78711822|ref|NP_001030589.1| succinate dehydrogenase cytochrome b560 subunit, mitochondrial
isoform 3 precursor [Homo sapiens]
gi|3420826|gb|AAC31940.1| integral membrane protein CII-3b [Homo sapiens]
gi|78096639|dbj|BAE46978.1| succinate dehydrogenase complex, subunit C delta3 alternative
splicing variant [Homo sapiens]
gi|119572989|gb|EAW52604.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa, isoform CRA_g [Homo sapiens]
Length = 135
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Query: 11 SPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSLRCYMDGS-V 68
SP L I M +SI HR TG + G + + N E L ++ G +
Sbjct: 19 SPQLCIRNWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPAL 78
Query: 69 FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
F + +++H GIR+L+WD+ L Q
Sbjct: 79 IHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 118
>gi|195038263|ref|XP_001990579.1| GH19425 [Drosophila grimshawi]
gi|193894775|gb|EDV93641.1| GH19425 [Drosophila grimshawi]
Length = 170
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLG--TPVVVFWFFCIANGEHTLSSL 60
++K R LSPHL IY++ T +SI+ RI+G V+ +G ++ F + E
Sbjct: 14 NMKLGRELSPHLTIYKIQLTSAMSILLRISGFVLGMGFWAIGLMGLFCNMDINELATKIE 73
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + F+ +HM+ G R+LI+ +++ L KK + +++
Sbjct: 74 EFELSKNFLSFLKFIIILPFAYHMVVGTRHLIFYLNVFLSKKGIYATGYAALAMTLIVAA 133
Query: 121 IV 122
+
Sbjct: 134 AL 135
>gi|50286141|ref|XP_445499.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524804|emb|CAG58410.1| unnamed protein product [Candida glabrata]
Length = 181
Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 5/128 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRIT----GSVVYLGTPVVVFWFFCIANGEHT 56
++ + RP+SPHL IY+ T ++S VHRI+ G Y+ T + +F +
Sbjct: 52 LNKQRALRPISPHLTIYQPQLTWYMSSVHRISHLILGGTFYVLTILFGLGYFVSGINTES 111
Query: 57 LS-SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+S ++ ++ + + H IR+ IWD + L K + + +
Sbjct: 112 VSQWYHKHVSPMTEQIVKAGFAFTFAFHYFSTIRHYIWDFAKELTLKGVYRTGYSVLALT 171
Query: 116 ILTVLIVW 123
+ +W
Sbjct: 172 AIAGTYIW 179
>gi|167627193|ref|YP_001677693.1| succinate dehydrogenase, cytochrome b556 [Francisella philomiragia
subsp. philomiragia ATCC 25017]
gi|167597194|gb|ABZ87192.1| succinate dehydrogenase, cytochrome b556 [Francisella philomiragia
subsp. philomiragia ATCC 25017]
Length = 126
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 47/105 (44%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
Y+ T SI+HRI+G V+ P+ V G + G + +L+
Sbjct: 15 YKFPITAISSILHRISGVVLIFAIPLAVVGMNYTLAGPDGYQQTVAVLTGGWCSIFFWLF 74
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
++ +H+ G+R++I D+ K A + + II +L+ ++
Sbjct: 75 LSSITYHVFAGVRHMIMDMGFGESMKAAKITSLLVIILGVLSAIL 119
>gi|209521208|ref|ZP_03269931.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
H160]
gi|209498350|gb|EDZ98482.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
H160]
Length = 138
Score = 88.2 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 7/128 (5%)
Query: 2 SSIKNNRPLSPH------LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
++K RP + L YRL VSI+HR++G++++L P ++F F E
Sbjct: 3 EAVKKPRPEFRNIGIGQILTAYRLPLAGRVSILHRVSGALLFLFLPFLLFLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIA 114
+ + ++ + ++ + WA + H G+R+L+ D + + K+ + + I+
Sbjct: 63 SFEVFKGFLSNILVKLITLVLAWAFLFHFCAGVRHLVMDTNHDAVSKEKGKSTSVVVIVV 122
Query: 115 SILTVLIV 122
S L +
Sbjct: 123 SSLLTIAF 130
>gi|17554318|ref|NP_499283.1| abnormal MEthyl Viologen sensitivity family member (mev-1)
[Caenorhabditis elegans]
gi|1169194|sp|P41956|C560_CAEEL RecName: Full=Succinate dehydrogenase cytochrome b560 subunit,
mitochondrial; Flags: Precursor
gi|433177|gb|AAA20081.1| CYT-1 [Caenorhabditis elegans]
gi|3879510|emb|CAA82572.1| C. elegans protein T07C4.7, confirmed by transcript evidence
[Caenorhabditis elegans]
Length = 182
Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ NRP++PHL +Y+ T +S HRI+G V+ V F + ++
Sbjct: 45 LKQRSKNRPIAPHLTVYQPQLTWMLSGFHRISGCVMAGTLLVGGIGFAVL---PFDFTAF 101
Query: 61 RCYMDGS-----VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK-IATQMAKINIIA 114
++ V V ++ + +I H L GIR+L +D++ ++ + +
Sbjct: 102 VDFIRSWNLPCAVTAVFKYIIAFPIIFHTLNGIRFLGFDLAKGVNNVGQIYKSGYLVSGL 161
Query: 115 SILTVLIV 122
S + L +
Sbjct: 162 SAILALAI 169
>gi|296229472|ref|XP_002760248.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like isoform 1 [Callithrix jacchus]
Length = 135
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 11 SPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSLRC-YMDGSV 68
SP L + M +SI HR TG + G + + N E L ++ Y+ ++
Sbjct: 19 SPQLCVRNWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLYLGPAL 78
Query: 69 FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
F + +++H GIR+L+WD+ L Q
Sbjct: 79 IHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 118
>gi|302896466|ref|XP_003047113.1| hypothetical protein NECHADRAFT_70858 [Nectria haematococca mpVI
77-13-4]
gi|256728041|gb|EEU41400.1| hypothetical protein NECHADRAFT_70858 [Nectria haematococca mpVI
77-13-4]
Length = 189
Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMF-VSIVHRITGSVV-----YLGTPVVVFWFFCIANGE 54
+ + + NRP+SPHL IY++ T F S +RITG + +V +
Sbjct: 58 LVNQRLNRPVSPHLGIYKMEQTWFGSSAWNRITGCTLSATMYAFMGAYLVAPVVGLHLET 117
Query: 55 HTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
++++ + V + ++H++ G ++L++D+ K + I A
Sbjct: 118 ASVAAAFGGLPLVVKGGVKLALGFPFVYHLINGFKHLLYDMGKGFAKPTIKKTDNILWAA 177
Query: 115 SILTVL 120
SIL +
Sbjct: 178 SILGAI 183
>gi|85708849|ref|ZP_01039915.1| hypothetical protein NAP1_06400 [Erythrobacter sp. NAP1]
gi|85690383|gb|EAQ30386.1| hypothetical protein NAP1_06400 [Erythrobacter sp. NAP1]
Length = 111
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 23 MFVSIVHRITGSVVYL-GTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVI 81
M VSI+HR++G + L G V+V+W +A+G + + V L TWA
Sbjct: 1 MLVSILHRVSGDGMALVGLAVLVWWLGALASGPDAYETFLWAAASPLGYVVLIGLTWAFF 60
Query: 82 HHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
HM+ G+R+ + D+ + + ++ I +I +++W
Sbjct: 61 THMMSGLRHFVLDIGAGYELDTNRFWSIVSPIIAIALTVVLW 102
>gi|195329969|ref|XP_002031681.1| GM26134 [Drosophila sechellia]
gi|194120624|gb|EDW42667.1| GM26134 [Drosophila sechellia]
Length = 264
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSLR 61
++ R LSPHL IY++ T +S RI+G V+ + V + + E + L
Sbjct: 79 NMLLGRQLSPHLSIYKIQLTSTLSAFLRISGFVLAVFVWFVGISGLCLQGDMEGYIKKLE 138
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + + T +H + G R+LIW ++ L + + +I
Sbjct: 139 KCDCQGMVTMAKVMVTIPFAYHTVAGTRHLIWYLNKFLTIPEIYATGYVAVALAIALSAF 198
Query: 122 VWIIK 126
+ +K
Sbjct: 199 LLAVK 203
>gi|2239247|emb|CAA74085.1| SdhC protein [Shewanella frigidimarina NCIMB 400]
Length = 110
Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 49/106 (46%)
Query: 19 LIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTW 78
T SI+HRI+G ++ ++++ +S++ DG V + ++
Sbjct: 2 FPATRIASILHRISGVIMLFAIGILLWLLNSTLTSADGFASVQSLFDGFVMKFIIWGILT 61
Query: 79 AVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
A+ +H+LGGIR+LI D + AK + +++ +I I
Sbjct: 62 ALGYHLLGGIRHLIMDAGHWEELASGVSSAKATFVLAVVFSIIAGI 107
>gi|255065302|ref|ZP_05317157.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria sicca
ATCC 29256]
gi|255050723|gb|EET46187.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria sicca
ATCC 29256]
Length = 98
Score = 87.4 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 43/88 (48%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
RP+ + RL VSI+HRI+G +++ PV+++ + E + R +
Sbjct: 4 KPRPVFLEIPNIRLPIPGIVSILHRISGVGLFIMLPVLLYLLSGTLSRESAFETYRAIVS 63
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIW 93
+ ++ L WA +HH L GIR+ W
Sbjct: 64 NPLVKLILIGVLWAYLHHFLAGIRFYFW 91
>gi|99035092|ref|ZP_01314880.1| hypothetical protein Wendoof_01000286 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 125
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL--SSLRCY 63
++RPLSPHLQIY++ T F SI+HR+TG +++L ++ ++F L L
Sbjct: 2 SDRPLSPHLQIYKVQVTSFFSIMHRLTGILLFLLLMILSWYFILHVYFPELLIVRYLNAL 61
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
+ V ++ L + ++H L GIR+L+ DV L L+ ++ A
Sbjct: 62 LFTPVAKLAYVLCFISFVYHFLNGIRHLLRDVGLNLEITGVSRSAI 107
>gi|119610981|gb|EAW90575.1| hCG1776980 [Homo sapiens]
Length = 135
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Query: 11 SPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSLRCYMDGS-V 68
SP L I M +SI HR TG + G + + N E L ++ G +
Sbjct: 19 SPQLCIRNWSLPMAMSICHRGTGIALSAGVSLFGMSAVLLPGNFESYLELVKSLCLGPAL 78
Query: 69 FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
F + +++H GIR+L+WD+ L Q
Sbjct: 79 IHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 118
>gi|307609335|emb|CBW98819.1| succinate dehydrogenase, cytochrome b556 subunit [Legionella
pneumophila 130b]
Length = 111
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 54/107 (50%)
Query: 18 RLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYT 77
+ P SI+HR++G +++L P V+F C E + + + + +++ L+ +
Sbjct: 2 KFPPMAIASILHRVSGVLIFLLFPFVLFILSCSLQSEESFAQTKIILANPYYKLLLWAFG 61
Query: 78 WAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
++I+H++ GIR+LI D+ + A I +++ + + I
Sbjct: 62 ASMIYHVIAGIRHLIMDMGFGESLRAGRMSAVSIIALAVILAIFLGI 108
>gi|291614300|ref|YP_003524457.1| succinate dehydrogenase, cytochrome b556 subunit [Sideroxydans
lithotrophicus ES-1]
gi|291584412|gb|ADE12070.1| succinate dehydrogenase, cytochrome b556 subunit [Sideroxydans
lithotrophicus ES-1]
Length = 124
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 57/121 (47%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RP L +L +VSI+HR++G+V++L P+++ T ++L Y
Sbjct: 1 MNKKRPKHLALHKIKLPLPGYVSILHRVSGAVLFLSLPLLLMLLDQSLRSIETYTNLTEY 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ V ++ LF WA +HH G+RYL D+ L A + + S+ ++
Sbjct: 61 LSNPVLKLVLFGLMWAFLHHFCAGLRYLAIDLHLLPSLAAARASSMWVMAVSLTLTVLFG 120
Query: 124 I 124
+
Sbjct: 121 V 121
>gi|319943670|ref|ZP_08017951.1| succinate dehydrogenase cytochrome b558 subunit [Lautropia
mirabilis ATCC 51599]
gi|319742903|gb|EFV95309.1| succinate dehydrogenase cytochrome b558 subunit [Lautropia
mirabilis ATCC 51599]
Length = 168
Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 21 PTMFVSIVHRITGSVVYL-GTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWA 79
P VSI+HR +G++++L G P +++ E + + + ++ L + W+
Sbjct: 59 PAAQVSILHRASGALMFLIGIPFMLYLLSQSITSESSFEVYSAVVHSWLGKLVLLVLIWS 118
Query: 80 VIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
HHM G R+++ D+ +K A AK+ + S+ +I
Sbjct: 119 FCHHMAAGFRFIVLDMHFLTEKSKAMFSAKVVLAVSLTMTVIF 161
>gi|319762655|ref|YP_004126592.1| succinate dehydrogenase, cytochrome b556 subunit [Alicycliphilus
denitrificans BC]
gi|330824796|ref|YP_004388099.1| succinate dehydrogenase, cytochrome b556 subunit [Alicycliphilus
denitrificans K601]
gi|317117216|gb|ADU99704.1| succinate dehydrogenase, cytochrome b556 subunit [Alicycliphilus
denitrificans BC]
gi|329310168|gb|AEB84583.1| succinate dehydrogenase, cytochrome b556 subunit [Alicycliphilus
denitrificans K601]
Length = 143
Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 13/135 (9%)
Query: 1 MSSIKNNRPLSP------HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE 54
M+ + RP L YR VS +HRI+G +++L P +++ F + E
Sbjct: 1 MTQLAKKRPEFRNIHAFKDLPSYRWPLAALVSGMHRISGLILFLLLPFIIWLFDKSVSSE 60
Query: 55 HTLSSLRC-------YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQM 107
+ S ++ ++ + W+ +HH+ G+R+L+ DV+ K
Sbjct: 61 ISFGSFTAAFTTGIGFVPAWFVKLVVLALIWSYLHHLAAGVRHLVLDVTHKTTKDFGRHS 120
Query: 108 AKINIIASILTVLIV 122
A ++ SI+ +I+
Sbjct: 121 AAATLVFSIMLTVIL 135
>gi|329847590|ref|ZP_08262618.1| succinate dehydrogenase, cytochrome b556 subunit [Asticcacaulis
biprosthecum C19]
gi|328842653|gb|EGF92222.1| succinate dehydrogenase, cytochrome b556 subunit [Asticcacaulis
biprosthecum C19]
Length = 112
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 47/103 (45%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
MF SI+HRITGS G ++ W C+A G T + Y + + F + A
Sbjct: 1 MFSSIMHRITGSAAVGGVVLIAAWLVCLALGRETYTVFLQYASTPLGLLVWFGLSLAGFV 60
Query: 83 HMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
H+ GG+R+LIWD + K A + I+ L W +
Sbjct: 61 HLGGGLRHLIWDTGASFELKKANALTAWTFALGIILTLAFWAV 103
>gi|239814437|ref|YP_002943347.1| succinate dehydrogenase, cytochrome b556 subunit [Variovorax
paradoxus S110]
gi|239801014|gb|ACS18081.1| succinate dehydrogenase, cytochrome b556 subunit [Variovorax
paradoxus S110]
Length = 148
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 13 HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC-------YMD 65
L YRL P VSI+HR++G +++L P +++ F + +++ + + ++
Sbjct: 23 DLTTYRLPPAGIVSILHRVSGVLMFLLLPFIIWMFDTSLSSDYSFARFKAAFNSGLGFVP 82
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIWDV-SLCLDKKIATQMA 108
G ++ WA +HH + G+R+L DV + K+ A
Sbjct: 83 GWFIKLVALALIWAYLHHFIAGLRHLWMDVSHAAVTKEFGHSSA 126
>gi|293610901|ref|ZP_06693200.1| succinate dehydrogenase [Acinetobacter sp. SH024]
gi|292826553|gb|EFF84919.1| succinate dehydrogenase [Acinetobacter sp. SH024]
Length = 133
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 63/129 (48%), Gaps = 5/129 (3%)
Query: 1 MSSIKNNRPLSP----HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP++ L + P SI+HR++G +V+L PV+++ +
Sbjct: 1 MPAVKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLVPVLLWILDKSLSSPEG 60
Query: 57 LSSL-RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ + ++++ +I H + GI++L+ D+ + + A I++I S
Sbjct: 61 FDYVKNVVFGNILVRFVVWVFAAGLIFHFIAGIKHLLADLGFAEELQSGRIAATISLILS 120
Query: 116 ILTVLIVWI 124
++ ++ ++
Sbjct: 121 VVAIIAAFV 129
>gi|167566431|ref|ZP_02359347.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
oklahomensis EO147]
gi|167573542|ref|ZP_02366416.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
oklahomensis C6786]
Length = 138
Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 64/130 (49%), Gaps = 7/130 (5%)
Query: 2 SSIKNNRPLSPHLQ------IYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
+++ RP ++ YR+ VSI+HR++G++++L P ++F F E
Sbjct: 3 ETVRKPRPEYRNIGFGDITLKYRMPLAARVSILHRVSGALLFLFLPFLLFLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIA 114
+ + ++ V ++ + +WA + H G+R+L+ D++ + K+ + + + +
Sbjct: 63 SFEVFKAFLSNIVVKLIVLALSWAFLFHFCAGVRHLMMDMNHDAVSKERGQKTSVVVFVV 122
Query: 115 SILTVLIVWI 124
S + + V +
Sbjct: 123 STVLTIAVAL 132
>gi|314908366|gb|ADT62130.1| succinate dehydrogenase subunit 3 [Isoetes engelmannii]
Length = 98
Score = 87.0 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVY--LGTPVVVFWFFCIANGEHTLSSLR 61
+K NRPLSPHL IY+ T SI HRI+G+ + + ++ + ++ + S
Sbjct: 1 MKINRPLSPHLTIYKPQLTSTFSIFHRISGAFLAAKVLFSLLFWKIGDLSLTFYYSYSFF 60
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
++ + + L A +HM G+R+L WD
Sbjct: 61 FFVFHWFIILLVNLTFLAFCYHMSNGVRHLWWDRG 95
>gi|56707251|ref|YP_169147.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. tularensis SCHU S4]
gi|110669721|ref|YP_666278.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. tularensis FSC198]
gi|115315406|ref|YP_764129.1| succinate dehydrogenase [Francisella tularensis subsp. holarctica
OSU18]
gi|118498201|ref|YP_899251.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. novicida U112]
gi|169656758|ref|YP_001429325.2| succinate dehydrogenase, cytochrome b subunit [Francisella
tularensis subsp. holarctica FTNF002-00]
gi|187931028|ref|YP_001891012.1| succinate dehydrogenase, cytochrome b556 subunit [Francisella
tularensis subsp. mediasiatica FSC147]
gi|254369935|ref|ZP_04985943.1| succinate dehydrogenase [Francisella tularensis subsp. tularensis
FSC033]
gi|254373545|ref|ZP_04989032.1| succinate dehydrogenase [Francisella tularensis subsp. novicida
GA99-3549]
gi|254375009|ref|ZP_04990489.1| succinate dehydrogenase [Francisella novicida GA99-3548]
gi|56603743|emb|CAG44705.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. tularensis SCHU S4]
gi|110320054|emb|CAL08088.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. tularensis FSC198]
gi|115130305|gb|ABI83492.1| succinate dehydrogenase [Francisella tularensis subsp. holarctica
OSU18]
gi|118424107|gb|ABK90497.1| succinate dehydrogenase, cytochrome b556 [Francisella novicida
U112]
gi|151568181|gb|EDN33835.1| succinate dehydrogenase [Francisella tularensis subsp. tularensis
FSC033]
gi|151571270|gb|EDN36924.1| succinate dehydrogenase [Francisella novicida GA99-3549]
gi|151572727|gb|EDN38381.1| succinate dehydrogenase [Francisella novicida GA99-3548]
gi|164551826|gb|ABU62369.2| succinate dehydrogenase, cytochrome b subunit [Francisella
tularensis subsp. holarctica FTNF002-00]
gi|187711937|gb|ACD30234.1| succinate dehydrogenase, cytochrome b556 subunit [Francisella
tularensis subsp. mediasiatica FSC147]
Length = 157
Score = 87.0 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
Y T SI+HRI+G V+ + P+ V G + S F V +L+
Sbjct: 46 YNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQTVTVLTKSWFSVFFWLF 105
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
++ +H+ GIR++I D+ K+A + + I+ +L+ ++
Sbjct: 106 LSSITYHVYAGIRHMIMDMGFGESMKVAKITSLLVIVLGVLSAIL 150
>gi|169632620|ref|YP_001706356.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii SDF]
gi|169151412|emb|CAP00143.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii]
Length = 133
Score = 86.6 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/132 (21%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Query: 1 MSSIKNNRPLSP----HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP++ L + P SI+HR++G +V+L PV+++ +
Sbjct: 1 MPAVKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLVPVLLWILDKSLSSPEG 60
Query: 57 LSSL-RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ + ++++ +I H + G+++L+ D+ + + A I++I S
Sbjct: 61 FDYVKNVVFGNILVRFVVWVFVAGLIFHFIAGVKHLLADLGFAEELQSGRIAATISLILS 120
Query: 116 ILTVLI--VWII 125
++ ++ VWI+
Sbjct: 121 VVAIIAAFVWIV 132
>gi|161831114|ref|YP_001597244.1| succinate dehydrogenase, cytochrome b556 subunit [Coxiella burnetii
RSA 331]
gi|1706427|sp|P51055|DHSC_COXBU RecName: Full=Succinate dehydrogenase cytochrome b556 subunit;
Short=Cytochrome b-556
gi|495753|gb|AAA74131.1| succinate dehydrogenase [Coxiella burnetii]
gi|161762981|gb|ABX78623.1| succinate dehydrogenase, cytochrome b556 subunit [Coxiella burnetii
RSA 331]
Length = 125
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 52/122 (42%), Gaps = 1/122 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL-RC 62
+ RP++ L + P +SI HRI+G V++L P++ + + L +
Sbjct: 1 MNAKRPVNLDLTKFHFPPMAILSIGHRISGFVLFLCMPLMFYLLHRATASAESFYHLHQL 60
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ ++ +++ A + H+ GIR+L D+ A + S + +++
Sbjct: 61 LLHNGWIKLAVWIMLSATLFHLFAGIRHLAMDLGFWESVPEGRISAYTVFVVSFIAIVLA 120
Query: 123 WI 124
+
Sbjct: 121 GV 122
>gi|224061007|ref|XP_002300314.1| predicted protein [Populus trichocarpa]
gi|222847572|gb|EEE85119.1| predicted protein [Populus trichocarpa]
Length = 282
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+++ RPLSPHL IYR SIV+RI+G+ +L T V+ F+F C+ G +
Sbjct: 188 NTMNILRPLSPHLPIYRPQVNSTFSIVNRISGA--FLSTIVLCFYFICLKTGLICFNYYN 245
Query: 62 CYMDGSV-FEVCLFLY----TWAVIHHMLGGIRYLI 92
Y ++ L A+ +H+ G+R+L+
Sbjct: 246 FYQFLFYSSKLILTSIDVTAALALAYHLFYGVRHLL 281
>gi|254369888|ref|ZP_04985897.1| succinate dehydrogenase [Francisella tularensis subsp. holarctica
FSC022]
gi|157122858|gb|EDO66975.1| succinate dehydrogenase [Francisella tularensis subsp. holarctica
FSC022]
Length = 157
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
Y T SI+HRI+G V+ + P+ V G + S F V +L+
Sbjct: 46 YNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQTVTVLTKSWFSVFFWLF 105
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
++ +H+ GIR++I D+ K+A + + I+ +L+ ++
Sbjct: 106 LSSITYHVYAGIRHMIMDMGFGESMKVAKITSLLVIVLGVLSAIL 150
>gi|296285024|ref|ZP_06863022.1| succinate dehydrogenase subunit C [Citromicrobium bathyomarinum
JL354]
Length = 108
Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 23 MFVSIVHRITGSVVYL-GTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVI 81
MF SI+HR+TG + L G V+++W +A+G ++ + L TWA
Sbjct: 1 MFTSILHRVTGDGMALVGLAVLLWWLGAMASGPEAYATFSAVATSIPGYIVLVGLTWAFF 60
Query: 82 HHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
HM+ G+R+ + D+ + I + + I +L + W I
Sbjct: 61 SHMMSGLRHFVLDIGAGYELTINKTWSTLAPILGVLLTIAFWAI 104
>gi|74317200|ref|YP_314940.1| succinate dehydrogenase subunit C [Thiobacillus denitrificans ATCC
25259]
gi|74056695|gb|AAZ97135.1| succinate dehydrogenase cytochrome b-556 subunit [Thiobacillus
denitrificans ATCC 25259]
Length = 126
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 45/107 (42%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RP+ L L +VSI+HR++G++++L P V+ + E +
Sbjct: 5 PRPVYLDLFRIHLPLPGWVSILHRVSGALLFLALPTGVWLLSVSLSDEAGYRYVSEVFAH 64
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINII 113
+ + WA HH G+R+L DV D A + + ++
Sbjct: 65 PLARTATLVLVWAASHHFFAGLRHLALDVHWGEDLASARRSSLAVMV 111
>gi|254876300|ref|ZP_05249010.1| succinate dehydrogenase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842321|gb|EET20735.1| succinate dehydrogenase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 129
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 46/105 (43%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
Y+ T SI+HRI+G V+ P+ V G + + +L+
Sbjct: 18 YKFPITAISSILHRISGVVLIFAIPLAVVGMNYTLAGPDGYQQTVAVLTRGWCSIFFWLF 77
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
++ +H+ G+R++I D+ K A + + II +L+ ++
Sbjct: 78 LSSITYHVYAGVRHMIMDMGFGESMKAAKITSLLVIILGVLSAIL 122
>gi|241667756|ref|ZP_04755334.1| succinate dehydrogenase, cytochrome b556 [Francisella philomiragia
subsp. philomiragia ATCC 25015]
Length = 126
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 46/105 (43%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
Y+ T SI+HRI+G V+ P+ V G + + +L+
Sbjct: 15 YKFPITAISSILHRISGVVLIFAIPLAVVGMNYTLAGPDGYQQTVAVLTRGWCSIFFWLF 74
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
++ +H+ G+R++I D+ K A + + II +L+ ++
Sbjct: 75 LSSITYHVYAGVRHMIMDMGFGESMKAAKITSLLVIILGVLSAIL 119
>gi|85090713|ref|XP_958549.1| hypothetical protein NCU07756 [Neurospora crassa OR74A]
gi|28919920|gb|EAA29313.1| hypothetical protein NCU07756 [Neurospora crassa OR74A]
Length = 180
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 6/126 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFV-SIVHRITGS----VVYLGTP-VVVFWFFCIANGE 54
++ + NRP+SPHL+IY T F S RITG+ +Y +
Sbjct: 49 LAKQRLNRPVSPHLEIYDPKQTWFGGSAWQRITGASFSGALYASAVAYLAAPLVGWHLES 108
Query: 55 HTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
+L + + +V FL W + H + G+R+L +D+ + + + A
Sbjct: 109 ASLVAAAAALPVAVKGALKFLVAWPFVFHAINGVRHLAFDLGIGFSRATIIKTGWYFWGA 168
Query: 115 SILTVL 120
SI+ +
Sbjct: 169 SIVGGV 174
>gi|195571855|ref|XP_002103916.1| GD20687 [Drosophila simulans]
gi|194199843|gb|EDX13419.1| GD20687 [Drosophila simulans]
Length = 262
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSLR 61
++ R LSPHL IY++ T +S RI+G V+ + V V + E + L
Sbjct: 76 NMLLGRQLSPHLSIYKIQLTSTLSAFLRISGFVLAVFVWFVGVSGLCLQGDMEGFIKKLE 135
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + + T +H + G R+LIW ++ L + + +I
Sbjct: 136 KCDCHGMVTMAKVMVTMPFAYHTVAGTRHLIWYLNKFLTIPEIYATGYVAVALAIALSAF 195
Query: 122 VWIIK 126
+ +K
Sbjct: 196 LLAVK 200
>gi|209916098|gb|ACI95893.1| succinate dehydrogenase subunit 3 [Isoetes engelmannii]
gi|217331572|gb|ACK38298.1| succinate dehydrogenase subunit 3 [Isoetes engelmannii]
gi|217331586|gb|ACK38312.1| succinate dehydrogenase subunit 3 [Isoetes engelmannii]
Length = 98
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVV--FWFFCIANGEHTLSSLR 61
+K NRPLSPHL IY+ T SI HRI+G+++ + + ++ + S
Sbjct: 1 MKINRPLSPHLTIYKPQLTSTFSIFHRISGALLAAKVLFSLPFWKIGDLSLTFYHSYSFF 60
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
++ + + L A +HM G+R+L WD
Sbjct: 61 FFVFHWFIILLVNLTFLAFCYHMSNGVRHLWWDRG 95
>gi|46132950|ref|XP_389188.1| hypothetical protein FG09012.1 [Gibberella zeae PH-1]
Length = 187
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMF-VSIVHRITGSVVY-----LGTPVVVFWFFCIANGE 54
+ + + NRP+SPHL IY+L T F S +RITG + + +
Sbjct: 56 LVNQRLNRPVSPHLAIYKLEQTWFGSSAWNRITGCTLSATLYGFSIAYLAAPVVGLHLES 115
Query: 55 HTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
+++S + +V F + ++H + G+++L++D K Q K A
Sbjct: 116 LSIASFVAGLPLAVKGGLKFTLGFPFVYHAISGVKHLLYDAGKGFAKSTIIQADKYVWAA 175
Query: 115 SILTVL 120
S+L +
Sbjct: 176 SVLGAI 181
>gi|50085920|ref|YP_047430.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter sp.
ADP1]
gi|49531896|emb|CAG69608.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter sp.
ADP1]
Length = 133
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/132 (21%), Positives = 67/132 (50%), Gaps = 7/132 (5%)
Query: 1 MSSIKNNRPLSP----HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP++ L + P SI+HR++G +V+L PV+++ +
Sbjct: 1 MPAVKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLIPVLLWILDKSLSSPEG 60
Query: 57 LSSLRC-YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
++ + + ++++ +I H + G+++L+ D+ + + A I++I S
Sbjct: 61 FEYVKTVIFGNILVRLIVWVFVAGLIFHFIAGVKHLLADLGFAEELQSGRTAATISLILS 120
Query: 116 ILTVLI--VWII 125
++ ++ VWI+
Sbjct: 121 VIGIIAAFVWIV 132
>gi|296159711|ref|ZP_06842534.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
Ch1-1]
gi|295890155|gb|EFG69950.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
Ch1-1]
Length = 138
Score = 86.3 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 2 SSIKNNRPLSPH------LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
++K RP + L YRL VSI+HR++G ++++ P +++ F E
Sbjct: 3 EAVKKPRPEFRNIGIGQILTAYRLPLAGRVSILHRLSGGLLFVFLPFLLYLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIA 114
+ + ++ + ++ + WA + H GIR+L+ D + + K+ + + ++
Sbjct: 63 SFEVFKGFLSNIIVKLITLVLAWAFLFHFCAGIRHLLMDTNHNAVTKEKGKSTSVVVLVV 122
Query: 115 SILTVLIV 122
S L +
Sbjct: 123 SSLLTIAF 130
>gi|126642742|ref|YP_001085726.1| succinate dehydrogenase cytochrome b556 subunit [Acinetobacter
baumannii ATCC 17978]
gi|169794942|ref|YP_001712735.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii AYE]
gi|260557308|ref|ZP_05829524.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii ATCC 19606]
gi|301346639|ref|ZP_07227380.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii AB056]
gi|332854231|ref|ZP_08435251.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii 6013150]
gi|332866326|ref|ZP_08436931.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii 6013113]
gi|332872541|ref|ZP_08440510.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii 6014059]
gi|126388626|gb|ABO13124.1| succinate dehydrogenase cytochrome b556 subunit [Acinetobacter
baumannii ATCC 17978]
gi|169147869|emb|CAM85732.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii AYE]
gi|260409414|gb|EEX02716.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii ATCC 19606]
gi|332728156|gb|EGJ59544.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii 6013150]
gi|332734674|gb|EGJ65778.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii 6013113]
gi|332739227|gb|EGJ70085.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii 6014059]
Length = 133
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 63/129 (48%), Gaps = 5/129 (3%)
Query: 1 MSSIKNNRPLSP----HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP++ L + P SI+HR++G +V+L PV+++ +
Sbjct: 1 MPAVKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLVPVLLWILDKSLSSPEG 60
Query: 57 LSSL-RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ + ++++ +I H + G+++L+ D+ + + A I++I S
Sbjct: 61 FDYVKNVVFGNILVRFVVWVFVAGLIFHFIAGVKHLLADLGFAEELQSGRIAATISLILS 120
Query: 116 ILTVLIVWI 124
++ ++ ++
Sbjct: 121 VVAIIAAFV 129
>gi|297303518|ref|XP_001093286.2| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like isoform 3 [Macaca mulatta]
Length = 134
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 11 SPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSLRCYMDGS-V 68
SP L I R M +SI HR TG + G + + N E L ++ G +
Sbjct: 19 SPQLCI-RKSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPAL 77
Query: 69 FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
F + +++H GIR+L+WD+ L Q
Sbjct: 78 IHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 117
>gi|262281274|ref|ZP_06059056.1| succinate dehydrogenase cytochrome b556 subunit [Acinetobacter
calcoaceticus RUH2202]
gi|262257505|gb|EEY76241.1| succinate dehydrogenase cytochrome b556 subunit [Acinetobacter
calcoaceticus RUH2202]
Length = 133
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 63/129 (48%), Gaps = 5/129 (3%)
Query: 1 MSSIKNNRPLSP----HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP++ L + P SI+HR++G +V+L PV+++ +
Sbjct: 1 MPAVKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLVPVLLWILDKSLSSPEG 60
Query: 57 LSSL-RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ + ++++ ++ H + G+++L+ D+ + + A I++I S
Sbjct: 61 FDYVKNVVFGNILVRFIVWVFVAGLLFHFIAGVKHLLADLGFAEELQSGRIAATISLILS 120
Query: 116 ILTVLIVWI 124
++ ++ ++
Sbjct: 121 VVAIIAAFV 129
>gi|328876220|gb|EGG24583.1| succinate dehydrogenase [Dictyostelium fasciculatum]
Length = 216
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 52/142 (36%), Gaps = 25/142 (17%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
KNNRP SPHL IY+L +SI HR TG + LG + + + +
Sbjct: 68 KNNRPTSPHLTIYKLPQPAILSITHRATGIAMGLGLFGLAGLAITGTDIPLFIEQFKTLY 127
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLI-----------------------WDVS-LCLD 100
V F + V H L G+R+L+ WD + ++
Sbjct: 128 PSLVIPT-KFCVAFPVAFHSLSGVRHLVCHCHHDHSDNNWFIQFPNTNIIFWDATLKGIE 186
Query: 101 KKIATQMAKINIIASILTVLIV 122
K A I + + L++
Sbjct: 187 VKSAETSGWIIVGVATAISLVL 208
>gi|260549001|ref|ZP_05823223.1| succinate dehydrogenase cytochrome b556 subunit [Acinetobacter sp.
RUH2624]
gi|260408169|gb|EEX01640.1| succinate dehydrogenase cytochrome b556 subunit [Acinetobacter sp.
RUH2624]
Length = 133
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 63/129 (48%), Gaps = 5/129 (3%)
Query: 1 MSSIKNNRPLSP----HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP++ L + P SI+HR++G +V+L PV+++ +
Sbjct: 1 MPAVKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLVPVLLWILDKSLSSPEG 60
Query: 57 LSSL-RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ + ++++ +I H + G+++L+ D+ + + A I++I S
Sbjct: 61 FDYVKNVVFGNILVRFIVWVFVAGLIFHFIAGVKHLLADLGFAEELQSGRIAATISLILS 120
Query: 116 ILTVLIVWI 124
++ ++ ++
Sbjct: 121 VVAIIAAFV 129
>gi|297299282|ref|XP_001093611.2| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like isoform 2 [Macaca mulatta]
gi|194374461|dbj|BAG57126.1| unnamed protein product [Homo sapiens]
Length = 134
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 11 SPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSLRCYMDGS-V 68
SP L I R M +SI HR TG + G + + N E L ++ G +
Sbjct: 19 SPQLCI-RKSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPAL 77
Query: 69 FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
F + +++H GIR+L+WD+ L Q
Sbjct: 78 IHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 117
>gi|327289832|ref|XP_003229628.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like [Anolis carolinensis]
Length = 156
Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 2/93 (2%)
Query: 18 RLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSLRCYMDGS-VFEVCLFL 75
R M +SI HR TG + LG + + + L +R G + F
Sbjct: 47 RWSLPMMMSISHRGTGVAMSLGVSLFGLSALVLPGHFADYLDLIRSLSLGPVLIYSAKFA 106
Query: 76 YTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ + H GIR+L WD+ Q
Sbjct: 107 LAFPLSFHTWNGIRHLAWDMGKGFKIPQVYQSG 139
>gi|332184747|gb|AEE27001.1| Succinate dehydrogenase cytochrome b-556 subunit [Francisella cf.
novicida 3523]
Length = 126
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
Y T SI+HRI+G V+ + P+ V G + S F V +L+
Sbjct: 15 YNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQTVAVLTKSWFSVFFWLF 74
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
++ +H+ GIR++I D+ K+A + + I+ +L+ ++
Sbjct: 75 LSSITYHVYAGIRHMIMDMGFGESMKVAKLTSLLVIVLGVLSAVL 119
>gi|167615383|ref|ZP_02384018.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
thailandensis Bt4]
Length = 138
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 2 SSIKNNRPLSPHLQ------IYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
+++ RP ++ YR+ VSI+HR++G++++L P +++ F E
Sbjct: 3 ETVRKPRPEYRNIGFRDITLKYRMPLAARVSILHRVSGALLFLFLPFLLYLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL 97
+ + ++ + ++ + +WA + H GIR+L+ D++
Sbjct: 63 SFEVFKAFLSNVIVKLIVLALSWAFLFHFCAGIRHLMMDMNH 104
>gi|83716452|ref|YP_438859.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
thailandensis E264]
gi|167577224|ref|ZP_02370098.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
thailandensis TXDOH]
gi|257141946|ref|ZP_05590208.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
thailandensis E264]
gi|83650277|gb|ABC34341.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
thailandensis E264]
Length = 138
Score = 85.5 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 2 SSIKNNRPLSPHLQ------IYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
+++ RP ++ YR+ VSI+HR++G++++L P +++ F E
Sbjct: 3 ETVRKPRPEYRNIGFGDITLKYRMPLAARVSILHRVSGALLFLFLPFLLYLFDQSLTSEL 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL 97
+ + ++ + ++ + +WA + H GIR+L+ D++
Sbjct: 63 SFEVFKAFLSNVIVKLIVLALSWAFLFHFCAGIRHLMMDMNH 104
>gi|297458265|ref|XP_002684105.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like [Bos taurus]
gi|297472055|ref|XP_002685668.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like isoform 2 [Bos taurus]
gi|296490235|gb|DAA32348.1| succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like
isoform 2 [Bos taurus]
Length = 116
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Query: 19 LIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSLRCYMDGS-VFEVCLFLY 76
M +SI HR TG + G + + + E L ++ G + F
Sbjct: 8 WSLPMAMSICHRGTGIALSAGVSLFGLSALLVPGSFESHLEFVKSLCLGPALIHTAKFAL 67
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ +++H GIR+L+WD+ L Q + ++ ++L+ + + +
Sbjct: 68 VFPLMYHTWNGIRHLMWDLGKGLTISQLHQSGEAVLVLTVLSSVGLAAM 116
>gi|83950428|ref|ZP_00959161.1| succinate dehydrogenase, cytochrome b556 subunit [Roseovarius
nubinhibens ISM]
gi|83838327|gb|EAP77623.1| succinate dehydrogenase, cytochrome b556 subunit [Roseovarius
nubinhibens ISM]
Length = 103
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 24 FVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHH 83
SI+ RITG+ + LG ++V+WF A G +++ + + ++ + WA+ +H
Sbjct: 1 MTSILTRITGNALLLGALLMVWWFLAAATGPEYFATVDGIVTSFLGDLIMVGSLWALWYH 60
Query: 84 MLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+L G+R+LIWD +L L+ + A + I S
Sbjct: 61 LLAGVRHLIWDNALMLELERAEMLGWSVIAGS 92
>gi|77165931|ref|YP_344456.1| succinate dehydrogenase, cytochrome b subunit [Nitrosococcus oceani
ATCC 19707]
gi|76884245|gb|ABA58926.1| succinate dehydrogenase subunit C [Nitrosococcus oceani ATCC 19707]
Length = 140
Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
N RP+ +L + R VS +HRI+G ++ PVVV+ + + + +
Sbjct: 16 NNPRPIFFNLALIRFPANAVVSALHRISGVILLFFIPVVVYLLDFSLRDKESFVWVTEFF 75
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK------IATQMAKINIIASILT 118
+ + WA++HH+ GIR+L++D+ + K A + + ++ ++L
Sbjct: 76 SSLPVRLVGIVALWALLHHIFAGIRFLLFDIHMGKIVKDYRPSWSARITSILALVVTLLI 135
Query: 119 VLIVW 123
V ++W
Sbjct: 136 VGVLW 140
>gi|121611268|ref|YP_999075.1| succinate dehydrogenase, cytochrome b subunit [Verminephrobacter
eiseniae EF01-2]
gi|121555908|gb|ABM60057.1| succinate dehydrogenase subunit C [Verminephrobacter eiseniae
EF01-2]
Length = 144
Score = 84.7 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 13/110 (11%)
Query: 1 MSSIKNNRPLSP------HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE 54
M+ RP L+ YRL +VSI+HR++G ++L P +V+ F + E
Sbjct: 1 MTKTAPERPEFRNLHLLQDLRTYRLPAAGWVSILHRVSGLAMFLLLPFIVWMFDTSLSSE 60
Query: 55 HTLSSLRCYM-------DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL 97
+ + G F++ W+ +HH G+R+L D+
Sbjct: 61 ISFARFTAIFKAGAGVVPGWCFKLLALALIWSFLHHFCAGLRHLWLDIHH 110
>gi|284007858|emb|CBA73762.1| succinate dehydrogenase cytochrome b-556 subunit [Arsenophonus
nasoniae]
Length = 125
Score = 84.7 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ T SI+HR++G + ++ ++++ +
Sbjct: 1 MKKQRPINLQLQTIHFPVTAIASILHRVSGVITFVAVGILLWLLGLSLSSLEGFQYATEI 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIAT----QMAKINIIASILT 118
M + ++ A+I+H+ GG+R+++ D + I I SIL
Sbjct: 61 MHSFFIKFIIWGVLTALIYHICGGLRHMLMDFGFIGESLLVGRISAIAAFIITAILSILA 120
Query: 119 VLIVW 123
+ VW
Sbjct: 121 GVFVW 125
>gi|170585370|ref|XP_001897457.1| Succinate dehydrogenase cytochrome b560 subunit,
mitochondrialprecursor [Brugia malayi]
gi|158595136|gb|EDP33709.1| Succinate dehydrogenase cytochrome b560 subunit,
mitochondrialprecursor, putative [Brugia malayi]
Length = 188
Score = 84.7 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RP+SPHL +Y+ T VS HR+TG + + F + T +
Sbjct: 52 KRPISPHLAVYKPQVTWMVSGFHRMTGCAMAGTLLIGGVGFALLPLNFTTFIDFIRGLGL 111
Query: 67 SVF--EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
++ F+ + + H L GIR++ +D++L D
Sbjct: 112 PWVITDIFKFIIAYPIAFHSLNGIRFIAFDLALGTDIASVYTSGY 156
>gi|71064679|ref|YP_263406.1| succinate dehydrogenase subunit C [Psychrobacter arcticus 273-4]
gi|71037664|gb|AAZ17972.1| succinate dehydrogenase subunit C [Psychrobacter arcticus 273-4]
Length = 128
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 65/131 (49%), Gaps = 10/131 (7%)
Query: 1 MSSIKNNRP----LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP LS + + R SI+HRI+G V++L PV+++ +
Sbjct: 1 MPAVKSNRPIDLPLSQVISVNRSPI-AIASILHRISGIVLFLLIPVMLWLLQNSLASPES 59
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
++ D + +++ A+ +H + G+++L D+ + + K + I+ + +
Sbjct: 60 FETV---FDNVLVRFLAWIFVAAIAYHFVMGMKHLFADMGMNEELKSGRAASMISFVIAA 116
Query: 117 LTVLI--VWII 125
+ ++ VW++
Sbjct: 117 ILIVASFVWVM 127
>gi|300113363|ref|YP_003759938.1| succinate dehydrogenase cytochrome b556 subunit [Nitrosococcus
watsonii C-113]
gi|299539300|gb|ADJ27617.1| succinate dehydrogenase, cytochrome b556 subunit [Nitrosococcus
watsonii C-113]
Length = 128
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
N RP+ +L + R VS++HRI+G ++ PVVV+ E + +
Sbjct: 4 NNPRPIFFNLALIRFPANAVVSVLHRISGVILLFFIPVVVYLLDLSLRDEEGFVWVTQFF 63
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ + WA++HH+ GIR+L++D+ + + + IASIL +++ +
Sbjct: 64 SSLPVRLMGIIALWALLHHIFAGIRFLLFDIHVG-KIVKDYRPSWSARIASILALVVTLL 122
Query: 125 IKDIV 129
I ++
Sbjct: 123 IAGVL 127
>gi|93004938|ref|YP_579375.1| succinate dehydrogenase, cytochrome b subunit [Psychrobacter
cryohalolentis K5]
gi|92392616|gb|ABE73891.1| succinate dehydrogenase subunit C [Psychrobacter cryohalolentis K5]
Length = 128
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 65/131 (49%), Gaps = 10/131 (7%)
Query: 1 MSSIKNNRP----LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP LS + + R SI+HRI+G +++L PV+++ +
Sbjct: 1 MPAVKSNRPIDLPLSQVISVNRSPI-AIASILHRISGIILFLLIPVMLWLLQNSLASPES 59
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
++ D + +++ A+ +H + G+++L D+ + + K + I+ + +
Sbjct: 60 FETV---FDNVLVRFLAWIFVAAIAYHFVMGMKHLFADMGMNEELKSGRAASMISFVIAA 116
Query: 117 LTVLI--VWII 125
+ ++ VW++
Sbjct: 117 ILIVASFVWVM 127
>gi|89257051|ref|YP_514413.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. holarctica LVS]
gi|89144882|emb|CAJ80227.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. holarctica LVS]
Length = 129
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
Y T SI+HRI+G V+ + P+ V G + S F V +L+
Sbjct: 18 YNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQTVTVLTKSWFSVFFWLF 77
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
++ +H+ GIR++I D+ K+A + + I+ +L+ ++
Sbjct: 78 LSSITYHVYAGIRHMIMDMGFGESMKVAKITSLLVIVLGVLSAIL 122
>gi|134301286|ref|YP_001121254.1| succinate dehydrogenase, cytochrome b subunit [Francisella
tularensis subsp. tularensis WY96-3418]
gi|167009437|ref|ZP_02274368.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. holarctica FSC200]
gi|194324383|ref|ZP_03058156.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. novicida FTE]
gi|208780227|ref|ZP_03247569.1| succinate dehydrogenase, cytochrome b556 [Francisella novicida FTG]
gi|134049063|gb|ABO46134.1| succinate dehydrogenase, cytochrome b subunit [Francisella
tularensis subsp. tularensis WY96-3418]
gi|194321448|gb|EDX18933.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. novicida FTE]
gi|208743876|gb|EDZ90178.1| succinate dehydrogenase, cytochrome b556 [Francisella novicida FTG]
gi|282158360|gb|ADA77751.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. tularensis NE061598]
Length = 126
Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
Y T SI+HRI+G V+ + P+ V G + S F V +L+
Sbjct: 15 YNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQTVTVLTKSWFSVFFWLF 74
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
++ +H+ GIR++I D+ K+A + + I+ +L+ ++
Sbjct: 75 LSSITYHVYAGIRHMIMDMGFGESMKVAKITSLLVIVLGVLSAIL 119
>gi|88860185|ref|ZP_01134824.1| putative succinate dehydrogenase, hydrophobic subunit, cytochrome
b556 with sdhD [Pseudoalteromonas tunicata D2]
gi|88818179|gb|EAR27995.1| putative succinate dehydrogenase, hydrophobic subunit, cytochrome
b556 with sdhD [Pseudoalteromonas tunicata D2]
Length = 110
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 46/106 (43%)
Query: 19 LIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTW 78
+ T SI+HR+TG ++ V++ + + ++ +G + + +
Sbjct: 1 MPATAKASILHRVTGVALFFALTFVIWAWSESLSSAQGFEFVKGLFNGFIAKFIAWGTLT 60
Query: 79 AVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+I+H++GG R+LI ++ + + AK I I+ +
Sbjct: 61 VLIYHLIGGFRHLIMEMGYWEELESGNASAKAAIALWIVLAAAAGV 106
>gi|226951562|ref|ZP_03822026.1| succinate dehydrogenase cytochrome b556 subunit [Acinetobacter sp.
ATCC 27244]
gi|294651219|ref|ZP_06728547.1| succinate dehydrogenasesuccinate dehydrogenase cytochrome b556
subunit [Acinetobacter haemolyticus ATCC 19194]
gi|226837704|gb|EEH70087.1| succinate dehydrogenase cytochrome b556 subunit [Acinetobacter sp.
ATCC 27244]
gi|292822872|gb|EFF81747.1| succinate dehydrogenasesuccinate dehydrogenase cytochrome b556
subunit [Acinetobacter haemolyticus ATCC 19194]
Length = 133
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 62/129 (48%), Gaps = 5/129 (3%)
Query: 1 MSSIKNNRPLSP----HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP++ L + P SI+HR++G +V+L V+++ +
Sbjct: 1 MPAVKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLVAVLLWILDKSLSSPEG 60
Query: 57 LSSL-RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ ++++ ++ H + GI++L+ D+ + + A +++I S
Sbjct: 61 FDYVKNVVFGNIFVRFIVWVFVAGLLFHFIAGIKHLLADLGFAEELQSGRIAATVSLILS 120
Query: 116 ILTVLIVWI 124
+++++ ++
Sbjct: 121 VISIVAAFV 129
>gi|332678935|gb|AEE88064.1| Succinate dehydrogenase cytochrome b-556 subunit [Francisella cf.
novicida Fx1]
Length = 126
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
Y T SI+HRI+G V+ + P+ V G + S F V +L+
Sbjct: 15 YNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQTVTILTKSWFSVFFWLF 74
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
++ +H+ GIR++I D+ K+A + + I+ +L+ ++
Sbjct: 75 LSSITYHVYAGIRHMIMDMGFGESMKVAKITSLLVIVLGVLSAIL 119
>gi|332970371|gb|EGK09363.1| succinate dehydrogenase cytochrome b558 subunit [Kingella kingae
ATCC 23330]
Length = 127
Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 4 IKNNRPLSPHLQIY--RLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
RP+ + L VSI+HR +G ++L P+++ + +
Sbjct: 2 QTKKRPVYLDMPTIIKHLPIPAIVSILHRASGVAIFLFLPILLALLAGSLSSGEVFLQYK 61
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ D + ++ L+ W IHH+ GIR+L+ D + ++ + A + A+I + + T
Sbjct: 62 SWADNAFIKLILWGILWLFIHHLFAGIRFLLIDAHIGVELQAARKSARIVLFGAAATAFA 121
Query: 122 VWII 125
+ I
Sbjct: 122 LGIF 125
>gi|164686052|ref|ZP_01946353.2| succinate dehydrogenase, cytochrome b556 subunit [Coxiella burnetii
'MSU Goat Q177']
gi|165918979|ref|ZP_02219065.1| succinate dehydrogenase, cytochrome b556 subunit [Coxiella burnetii
RSA 334]
gi|164601608|gb|EAX33026.2| succinate dehydrogenase, cytochrome b556 subunit [Coxiella burnetii
'MSU Goat Q177']
gi|165917304|gb|EDR35908.1| succinate dehydrogenase, cytochrome b556 subunit [Coxiella burnetii
RSA 334]
Length = 125
Score = 84.0 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 52/122 (42%), Gaps = 1/122 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL-RC 62
+ RP++ L + P +SI HRI+G V++L P++ + + L +
Sbjct: 1 MNATRPVNLDLTKFHFPPMAILSIGHRISGFVLFLCMPLMFYLLHRATASVESFYHLHQL 60
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ ++ +++ A + H+ GIR+L D+ A + S + +++
Sbjct: 61 LLHNGWIKLAVWIMLSATLFHLFAGIRHLAMDLGFWESVPEGRISAYTVFVVSFIAIVLA 120
Query: 123 WI 124
+
Sbjct: 121 GV 122
>gi|67642755|ref|ZP_00441507.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
mallei GB8 horse 4]
gi|126446434|ref|YP_001077700.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
mallei NCTC 10247]
gi|237510177|ref|ZP_04522892.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei MSHR346]
gi|254176228|ref|ZP_04882886.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
mallei ATCC 10399]
gi|254184975|ref|ZP_04891564.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei 1655]
gi|254186202|ref|ZP_04892720.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei Pasteur 52237]
gi|254194358|ref|ZP_04900790.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei S13]
gi|254203289|ref|ZP_04909650.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
mallei FMH]
gi|254205168|ref|ZP_04911521.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
mallei JHU]
gi|254265397|ref|ZP_04956262.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei 1710a]
gi|254301256|ref|ZP_04968700.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei 406e]
gi|254359294|ref|ZP_04975566.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
mallei 2002721280]
gi|126239288|gb|ABO02400.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
mallei NCTC 10247]
gi|147745528|gb|EDK52607.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
mallei FMH]
gi|147754754|gb|EDK61818.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
mallei JHU]
gi|148028481|gb|EDK86441.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
mallei 2002721280]
gi|157810794|gb|EDO87964.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei 406e]
gi|157933888|gb|EDO89558.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei Pasteur 52237]
gi|160697270|gb|EDP87240.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
mallei ATCC 10399]
gi|169651109|gb|EDS83802.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei S13]
gi|184215567|gb|EDU12548.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei 1655]
gi|235002382|gb|EEP51806.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei MSHR346]
gi|238523946|gb|EEP87381.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
mallei GB8 horse 4]
gi|254216399|gb|EET05784.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia
pseudomallei 1710a]
Length = 113
Score = 84.0 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 19 LIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTW 78
+ VSI+HR++G++++L P +++ F E + + ++ + ++ + +W
Sbjct: 1 MPLAARVSILHRVSGALLFLFLPFLLYLFDQSLTSELSFEVFKAFLSNIIVKLIVLALSW 60
Query: 79 AVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIASILTVLIVWI 124
A + H GIR+L+ D++ + K+ + + + S L + V +
Sbjct: 61 AFLFHFCAGIRHLMMDMNHDAVSKERGKKTSVVVFAVSTLLTIAVAL 107
>gi|289616414|emb|CBI56941.1| unnamed protein product [Sordaria macrospora]
Length = 180
Score = 84.0 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 6/126 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFV-SIVHRITGS----VVYLGTP-VVVFWFFCIANGE 54
++ + +RP+SPHL+IY T F S RITG+ +Y +
Sbjct: 49 LAKQRLSRPVSPHLEIYDPKQTWFGGSAWQRITGASFSGALYASAVAYLAAPLVGWHLES 108
Query: 55 HTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
+L + + +V FL W + H + G+R+L +DV + + + A
Sbjct: 109 SSLIAAAAALPVAVKGGLKFLVAWPFVFHAINGVRHLAFDVGVGFGRSTIIKTGWYFWGA 168
Query: 115 SILTVL 120
SI+ L
Sbjct: 169 SIVGGL 174
>gi|325182722|emb|CCA17177.1| transmembrane protein putative [Albugo laibachii Nc14]
Length = 170
Score = 84.0 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RP+SPH+QIY + T SI +R+TG + +G + + + S + +
Sbjct: 40 RLGRPVSPHVQIYAMPITAVSSITNRVTGVGLSVGFVAASSYALVGGDVPSLIHSAQVSI 99
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWD 94
LF+ + + +H L IR++ WD
Sbjct: 100 PAFTPLSKLFV-AFPLSYHTLAAIRHMAWD 128
>gi|156849173|ref|XP_001647467.1| hypothetical protein Kpol_1018p147 [Vanderwaltozyma polyspora DSM
70294]
gi|156118153|gb|EDO19609.1| hypothetical protein Kpol_1018p147 [Vanderwaltozyma polyspora DSM
70294]
Length = 170
Score = 84.0 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 51/129 (39%), Gaps = 5/129 (3%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-----EH 55
+++ + NRP+SPHL IY+ T ++S VHR++ + +V F +
Sbjct: 42 LTAQRGNRPISPHLTIYQPQLTWYLSSVHRVSCIALGACFYLVTISFGLSSLLGLGLTAD 101
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ ++ + + +++ IR+ +WD+ L + + +
Sbjct: 102 SFANWYNSWSSTSQSLVKGAFSYLFAFQFTLSIRHFMWDMGKGLSLSGVYRSGYTAMAVA 161
Query: 116 ILTVLIVWI 124
+W+
Sbjct: 162 TALGTYLWL 170
>gi|299470359|emb|CBN78408.1| SDH3, succinate dehydrogenase subunit 3 [Ectocarpus siliculosus]
Length = 176
Score = 83.6 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 4/122 (3%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RP+SPH+ IY P SI +R+TG + G + G +
Sbjct: 58 RTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISG---ATLVGCDAAGLMSALG 114
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWD-VSLCLDKKIATQMAKINIIASILTVLIVW 123
V ++ +++H LG +R+ +WD + L + + + S L +
Sbjct: 115 SSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPETLQTAGVAKTSYALLGVSGAVSLGLA 174
Query: 124 II 125
+
Sbjct: 175 AV 176
>gi|262371930|ref|ZP_06065209.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
junii SH205]
gi|262311955|gb|EEY93040.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
junii SH205]
Length = 133
Score = 83.6 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 62/129 (48%), Gaps = 5/129 (3%)
Query: 1 MSSIKNNRPLSP----HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP++ L + P SI+HR++G +V+L V+++ +
Sbjct: 1 MPAVKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLVAVLLWILDKSLSSPEG 60
Query: 57 LSSL-RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ + ++++ +I H + GI++L+ D+ + + A +++I S
Sbjct: 61 FDYVKNVVFGNILVRFIVWVFVAGLIFHFIAGIKHLLADLGFAEELQSGRIAATVSLILS 120
Query: 116 ILTVLIVWI 124
++ ++ ++
Sbjct: 121 VIGIVAAFV 129
>gi|325266125|ref|ZP_08132809.1| succinate dehydrogenase cytochrome b558 subunit [Kingella
denitrificans ATCC 33394]
gi|324982355|gb|EGC17983.1| succinate dehydrogenase cytochrome b558 subunit [Kingella
denitrificans ATCC 33394]
Length = 127
Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 4 IKNNRPLSPHL-QIYR-LIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
RP+ + I R L VSI+HR +G +++L PV++ + + +
Sbjct: 2 QTKKRPVYLDMPTIIRHLPIPGIVSILHRASGVMLFLLLPVLLSLLAGSLSSGQAFAEYK 61
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ D ++ L W IHH+ GIR+L+ D + ++ + A + AK + + T I
Sbjct: 62 AWADNWFMKLILIGVLWLFIHHLFAGIRFLLIDAHIGVELQPARKTAKWVLYGAPATAFI 121
Query: 122 VWI 124
+ I
Sbjct: 122 LGI 124
>gi|11466582|ref|NP_066472.1| succinate:cytochrome c oxidoreductase subunit 3 [Rhodomonas salina]
gi|10444169|gb|AAG17743.1|AF288090_19 succinate:cytochrome c oxidoreductase subunit 3 [Rhodomonas salina]
Length = 128
Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG-----EHTLSS 59
K RPL+PHL +Y+ T SI HRI+ ++++ +++F +C + +
Sbjct: 3 KKIRPLAPHLLVYKPQLTSIFSIFHRISAGILFVVFTILLFLSYCFDYYLNFFSFYFIFY 62
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ + T+ + HM+ G+R++ WD L L+ K I S L V
Sbjct: 63 YFFPFFNLIIYFVSYFLTFIFLFHMVNGLRHISWDFGLGLEIKNVYITGIIVFCISSLFV 122
Query: 120 LIVWII 125
++ +I
Sbjct: 123 FVLILI 128
>gi|332283673|ref|YP_004415584.1| succinate dehydrogenase cytochrome B subunit [Pusillimonas sp.
T7-7]
gi|330427626|gb|AEC18960.1| succinate dehydrogenase cytochrome B subunit [Pusillimonas sp.
T7-7]
Length = 104
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANG-EHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLG 86
+HR +G++++L P+V+ F ++ G + +S++ ++ + ++ L W +HH
Sbjct: 1 MHRASGALLFLCIPLVILPLFALSVGSPESFASIQDWVANPLCKLVLLALIWGYLHHFCA 60
Query: 87 GIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
GIRYL+ D+ + DK A + A + S+ L+ +
Sbjct: 61 GIRYLVLDLHIGNDKHTAQKTAGVVFGVSLALTLVFGL 98
>gi|255318870|ref|ZP_05360096.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
radioresistens SK82]
gi|262378873|ref|ZP_06072030.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
radioresistens SH164]
gi|255304126|gb|EET83317.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
radioresistens SK82]
gi|262300158|gb|EEY88070.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
radioresistens SH164]
Length = 132
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 1 MSSIKNNRPLSP----HLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP++ L + P SI+HRI+G +V+L PV+++ +
Sbjct: 1 MPAVKSNRPVNLSMGQVLAVNLRSPVAIASILHRISGVIVFLLVPVLLWLLDKSLSSPEG 60
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+ ++ G ++++ +I+H G+++L+ D+ + + A I++ S+
Sbjct: 61 FAQVQEIFSGFFVRFIVWVFVAGLIYHFFTGLKHLLADIGVGEGLQSGRTAATISLALSV 120
Query: 117 LTVLI--VWII 125
+ ++ VWI+
Sbjct: 121 IGIIAAFVWIM 131
>gi|313814|emb|CAA52088.1| succinate dehydrogenase cytochrome b subunit [Saccharomyces
cerevisiae]
Length = 198
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS- 59
++ + RP+SPHL IY+ T ++S +HRI+ ++ LG + F L++
Sbjct: 68 LNKQRAKRPISPHLTIYQPQLTWYLSSLHRISLVLMGLGFYLFTILFGVSGLLGLGLTTE 127
Query: 60 -LRCYMDGSVFEVCLFLYTWAVIH----HMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
+ + ++ + + + H G IR+LIWD + L K + I
Sbjct: 128 KVSNWYHQKFSKITEWSIKGSFAYLFAIHYGGAIRHLIWDTAKELTLKGVYRTGYALIGF 187
Query: 115 SILT 118
+ +
Sbjct: 188 TAVL 191
>gi|219112939|ref|XP_002186053.1| succinate dehydrogenase cytochrome b subunit [Phaeodactylum
tricornutum CCAP 1055/1]
gi|209582903|gb|ACI65523.1| succinate dehydrogenase cytochrome b subunit [Phaeodactylum
tricornutum CCAP 1055/1]
Length = 167
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 2/120 (1%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH-TLSSLRCY 63
+ RP+SPH+ +Y SI +R+TG V+ G + +G +
Sbjct: 45 NSGRPVSPHVTVYNFPIAAVASITNRVTGCVLSFGALGLGAAELLGGSGSALYIMQFVGS 104
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWD-VSLCLDKKIATQMAKINIIASILTVLIV 122
+ F ++ +++H GG+R+L+WD L + + S L +
Sbjct: 105 QGMLISAGSKFAISFPIVYHYGGGLRHLMWDQYPEMLTNTDVAKSSYQLFAGSALISGAL 164
>gi|302898077|ref|XP_003047773.1| hypothetical protein NECHADRAFT_50762 [Nectria haematococca mpVI
77-13-4]
gi|256728704|gb|EEU42060.1| hypothetical protein NECHADRAFT_50762 [Nectria haematococca mpVI
77-13-4]
Length = 188
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 7/129 (5%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMF-VSIVHRITGSVVYLGTPV-----VVFWFFCIANGE 54
+ + NRP++PHL IY++ F S RITG + + V +
Sbjct: 56 LVKQRLNRPVTPHLSIYKIGQVWFSASAWTRITGIALGGTAYLTLCAYAVAPLLGLPFDS 115
Query: 55 HTLSSLRCYMDGSVFEVCLFLYT-WAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINII 113
++S + V F + +H + G+R+L++D+ K +
Sbjct: 116 AAVASAFGSLPFVVKAAVKFGLLGFPFSYHFVNGVRHLVFDLGFGYKKAQFRKSEAATWT 175
Query: 114 ASILTVLIV 122
SI+ L++
Sbjct: 176 LSIIGGLVL 184
>gi|15004510|gb|AAK77126.1|AF362730_1 succinate dehydrogenase subunit 3 [Solanum lycopersicum]
gi|316996003|dbj|BAD83440.2| succinate dehydrogenase subunit 3 [Nicotiana tabacum]
Length = 108
Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RPLSPHL IY+ T SI HRI+G+ +L T V F+ C+ G + Y
Sbjct: 1 MNILRPLSPHLPIYKPQLTSTFSIFHRISGA--FLATIVFFFYLLCLKIGLICFTYENFY 58
Query: 64 MDGSV-FEVCLF---LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQ 106
++ L + A+ +H+ G+R+L+ D S +I +
Sbjct: 59 QFFFYSSKLILISVEITALALSYHLYNGVRHLLTDFSGFFFLRIGRK 105
>gi|57013903|ref|YP_173376.1| succinate dehydrogenase subunit 3 [Nicotiana tabacum]
gi|57013992|ref|YP_173464.1| succinate dehydrogenase subunit 3 [Nicotiana tabacum]
gi|57014032|ref|YP_173503.1| succinate dehydrogenase subunit 3 [Nicotiana tabacum]
gi|56806628|dbj|BAD83529.1| succinate dehydrogenase subunit 3 [Nicotiana tabacum]
gi|56806668|dbj|BAD83569.1| succinate dehydrogenase subunit 3 [Nicotiana tabacum]
Length = 108
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RPLSPHL IY+ T SI HRI+G+ +L T V F+ C+ G + Y
Sbjct: 1 MNILRPLSPHLPIYKPQLTSTFSISHRISGA--FLATIVFFFYLLCLKIGLICFTYENFY 58
Query: 64 MDGSV-FEVCLF---LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQ 106
++ L + A+ +H+ G+R+L+ D S +I +
Sbjct: 59 QFFFYSSKLILISVEITALALSYHLYNGVRHLLTDFSGFFFLRIGRK 105
>gi|6322708|ref|NP_012781.1| Sdh3p [Saccharomyces cerevisiae S288c]
gi|464750|sp|P33421|SDH3_YEAST RecName: Full=Succinate dehydrogenase [ubiquinone] cytochrome b
subunit, mitochondrial; Flags: Precursor
gi|396438|emb|CAA80957.1| succinate dehydrogenase cytochrome b subunit [Saccharomyces
cerevisiae]
gi|486241|emb|CAA81982.1| SDH3 [Saccharomyces cerevisiae]
gi|51013499|gb|AAT93043.1| YKL141W [Saccharomyces cerevisiae]
gi|285813124|tpg|DAA09021.1| TPA: Sdh3p [Saccharomyces cerevisiae S288c]
Length = 198
Score = 82.8 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS- 59
++ + RP+SPHL IY+ T ++S +HRI+ ++ LG + F L++
Sbjct: 68 LNKQRAKRPISPHLTIYQPQLTWYLSSLHRISLVLMGLGFYLFTILFGVSGLLGLGLTTE 127
Query: 60 -LRCYMDGSVFEVCLFLYTWAVIH----HMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
+ + ++ + + + H G IR+LIWD + L K + I
Sbjct: 128 KVSNWYHQKFSKITEWSIKGSFAYLFAIHYGGAIRHLIWDTAKELTLKGVYRTGYALIGF 187
Query: 115 SILT 118
+ +
Sbjct: 188 TAVL 191
>gi|238598805|ref|XP_002394705.1| hypothetical protein MPER_05360 [Moniliophthora perniciosa FA553]
gi|215464172|gb|EEB95635.1| hypothetical protein MPER_05360 [Moniliophthora perniciosa FA553]
Length = 210
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 2/122 (1%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
++ + N+P PH IY+ T SI + +TG+ + + + + + S +
Sbjct: 69 LNKQRLNQPSGPHFTIYQPQLTWLWSIANCVTGAALSALLYGFSLAYPVVPDTFSSASVV 128
Query: 61 RCYMDGS--VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
V + H G+ +L WD L K A + AS ++
Sbjct: 129 EFVSGLPEGVKYAGKAILAAPFSFHAFNGLSHLTWDSGKFLTVKGAYYTGYTVLGASAIS 188
Query: 119 VL 120
+
Sbjct: 189 TI 190
>gi|151941666|gb|EDN60028.1| succinate dehydrogenase cytochrome b [Saccharomyces cerevisiae
YJM789]
Length = 198
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS- 59
++ + RP+SPHL IY+ T ++S HRI+ ++ LG + F L++
Sbjct: 68 LNKQRAKRPISPHLTIYQPQLTWYLSSFHRISLVLMGLGFYLFTILFGVSGLLGLGLTTE 127
Query: 60 -LRCYMDGSVFEVCLFLYTWAVIH----HMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
+ + ++ + + + H G IR+LIWD + L K + I
Sbjct: 128 KVSNWYHQKFSKITEWSIKGSFAYLFAIHYGGAIRHLIWDTAKELTLKGVYRTGYALIGF 187
Query: 115 SILT 118
+ +
Sbjct: 188 TAVL 191
>gi|323332726|gb|EGA74131.1| Sdh3p [Saccharomyces cerevisiae AWRI796]
Length = 194
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS- 59
++ + RP+SPHL IY+ T ++S HRI+ ++ LG + F L++
Sbjct: 64 LNKQRAKRPISPHLTIYQPQLTWYLSSFHRISLVLMGLGFYLFTILFGVSGLLGLGLTTE 123
Query: 60 -LRCYMDGSVFEVCLFLYTWAVIH----HMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
+ + ++ + + + H G IR+LIWD + L K + I
Sbjct: 124 KVSNWYHQKFSKITEWSIKGSFAYLFAIHYGGAIRHLIWDTAKELTLKGVYRTGYALIGF 183
Query: 115 SILT 118
+ +
Sbjct: 184 TAVL 187
>gi|207343604|gb|EDZ71023.1| YKL141Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 198
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS- 59
++ + RP+SPHL IY+ T ++S HRI+ ++ LG + F L++
Sbjct: 68 LNKQRAKRPISPHLTIYQPQLTWYLSSFHRISLVLMGLGFYLFTILFGVSGLLGLGLTTE 127
Query: 60 -LRCYMDGSVFEVCLFLYTWAVIH----HMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
+ + ++ + + + H G IR+LIWD + L K + I
Sbjct: 128 KVSNWYHQKFSKITEWSIKGSFAYLFAIHYGGAIRHLIWDTAKELTLKGVYRTGYALIGF 187
Query: 115 SILT 118
+ +
Sbjct: 188 TAVL 191
>gi|323308340|gb|EGA61586.1| Sdh3p [Saccharomyces cerevisiae FostersO]
Length = 194
Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS- 59
++ + RP+SPHL IY+ T ++S HRI+ ++ LG + F L++
Sbjct: 64 LNKQRAKRPISPHLTIYQPQLTWYLSSFHRISLVLMGLGFYLFTILFGVSGLLGLGLTTE 123
Query: 60 -LRCYMDGSVFEVCLFLYTWAVIH----HMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
+ + ++ + + + H G IR+LIWD + L K + I
Sbjct: 124 KVSNWYHQKFSKITEWSIKGSFAYLFAIHYGGAIRHLIWDTAKELTLKGVYRTGYALIGF 183
Query: 115 SILT 118
+ +
Sbjct: 184 TTVL 187
>gi|14861484|gb|AAK73692.1|AF362739_1 succinate dehydrogenase subunit 3 [Gossypium hirsutum]
Length = 201
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHL IY+ + +SI +RI+G +L T ++ + + G + Y
Sbjct: 107 RPLSPHLPIYKPQLSATLSITNRISGV--FLTTALLFSYLLSLKMGSICFTYSNFYQFFF 164
Query: 68 ----VFEVCLFLYTWAVIHHMLGGIRYLIWDV 95
+ V + + AV +H+ G+R+L+ D
Sbjct: 165 YSAKLAPVTVSIAALAVSYHLCYGVRHLLADF 196
>gi|190409697|gb|EDV12962.1| succinate dehydrogenase cytochrome b [Saccharomyces cerevisiae
RM11-1a]
gi|259147700|emb|CAY80950.1| Sdh3p [Saccharomyces cerevisiae EC1118]
Length = 198
Score = 82.0 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS- 59
++ + RP+SPHL IY+ T ++S HRI+ ++ LG + F L++
Sbjct: 68 LNKQRAKRPISPHLTIYQPQLTWYLSSFHRISLVLMGLGFYLFTILFGVSGLLGLGLTTE 127
Query: 60 -LRCYMDGSVFEVCLFLYTWAVIH----HMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
+ + ++ + + + H G IR+LIWD + L K + I
Sbjct: 128 KVSNWYHQKFSKITEWSIKGSFAYLFAIHYGGAIRHLIWDTAKELTLKGVYRTGYALIGF 187
Query: 115 SILT 118
+ +
Sbjct: 188 TAVL 191
>gi|326793534|ref|YP_004311354.1| succinate dehydrogenase, cytochrome b556 subunit [Marinomonas
mediterranea MMB-1]
gi|326544298|gb|ADZ89518.1| succinate dehydrogenase, cytochrome b556 subunit [Marinomonas
mediterranea MMB-1]
Length = 126
Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RP++ ++ RL T SI+HRI+ ++++G V + + N + +
Sbjct: 1 MSKARPVNLDIKTIRLPITAIASILHRISAVILWVGFGVFLVNAYFSLNSKDGFGYVSSL 60
Query: 64 M-DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ D V + ++ A+ ++M+ +++L+ D+ + + +A + I IL L
Sbjct: 61 LADYFVIQFVIWGMLTALGYYMVATLKHLVQDMGYFEELESGKMIANVAIAIGILLSLCT 120
Query: 123 WI 124
+
Sbjct: 121 GV 122
>gi|323304156|gb|EGA57933.1| Sdh3p [Saccharomyces cerevisiae FostersB]
Length = 198
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS- 59
++ + RP+SPHL IY+ T ++S HRI+ ++ LG + F L++
Sbjct: 68 LNKQRAKRPISPHLTIYQPQLTWYLSSXHRISLVLMGLGFYLFTILFGVSGLLGLGLTTE 127
Query: 60 -LRCYMDGSVFEVCLFLYTWAVIH----HMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
+ + ++ + + + H G IR+LIWD + L K + I
Sbjct: 128 KVSNWYHQKFSKITEWSIKGSFAYLFAIHYGGAIRHLIWDTAKELTLKGVYRTGYALIGF 187
Query: 115 SILT 118
+ +
Sbjct: 188 TAVL 191
>gi|56478026|ref|YP_159615.1| putative succinate dehydrogenase cytochrome B subunit (succinate
dehydrogenase, cytochrome b556 subunit [Aromatoleum
aromaticum EbN1]
gi|56314069|emb|CAI08714.1| putative succinate dehydrogenase cytochrome B subunit (Succinate
dehydrogenase, cytochrome b556 subunit [Aromatoleum
aromaticum EbN1]
Length = 128
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 41/99 (41%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSV 68
P +L R SI HRI+G ++ + P + GE +LR +
Sbjct: 9 PKFLNLSQIRFPIGAIASIGHRISGVLLLITLPFLALALDRSLRGEAEFEALRDLVSAPG 68
Query: 69 FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQM 107
+ L + WA HH+L G+R+L+ D+ + A
Sbjct: 69 RALLLIVVVWAASHHVLAGLRHLLMDLGVGSRLDQARTS 107
>gi|322694808|gb|EFY86628.1| succinate dehydrogenase cytochrome b subunit [Metarhizium acridum
CQMa 102]
Length = 182
Score = 81.6 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 6/126 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFV-SIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
+ + RP+SP+L IY++ T S RITG + V + L +
Sbjct: 51 LVKQRLQRPVSPNLGIYKIEQTWLGHSAWTRITGCTLSGAAYVYFSAYLAAPLLGWHLET 110
Query: 60 LRCYMDGSVFEV-----CLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
+ FL + +H + G+R+L +D+ K + +
Sbjct: 111 ASLASAFAALPFAVKGGVKFLLGFPFAYHFINGLRHLWFDLGKGFAKPSIKRGEMALWTS 170
Query: 115 SILTVL 120
SIL+ L
Sbjct: 171 SILSGL 176
>gi|313768525|ref|YP_004062200.1| SdhC [Gracilariopsis andersonii]
gi|312844652|gb|ADR03216.1| SdhC [Gracilariopsis andersonii]
Length = 126
Score = 81.3 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 4/124 (3%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVF---WFFCIANGEHTLSSLRCY 63
NRPLSPHL IY+ + SI HRI+G + + F I + L+SL
Sbjct: 3 NRPLSPHLTIYKPQVSSLFSIWHRISGIFLTFLIVFYLISSQLFLHITYSKDVLNSLIIQ 62
Query: 64 M-DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + L T +H + G++++IWD+ K + + I+ +
Sbjct: 63 LEYSFFLQFIYILNTSIFFYHAINGVKHIIWDLGFFPTPKFWFFLFFNCFLLIIIINVFA 122
Query: 123 WIIK 126
I K
Sbjct: 123 AIYK 126
>gi|256269924|gb|EEU05182.1| Sdh3p [Saccharomyces cerevisiae JAY291]
Length = 198
Score = 81.3 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS- 59
++ + RP+SPHL IY+ T ++S HRI+ ++ LG + F L++
Sbjct: 68 LNKQRARRPISPHLTIYQPQLTWYLSSFHRISLVLMGLGFYLFTILFGVSGLLGLGLTTE 127
Query: 60 -LRCYMDGSVFEVCLFLYTWAVIH----HMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
+ + ++ + + + H G IR+LIWD + L K + I
Sbjct: 128 KVSNWYHQKFSKITEWSIKGSFAYLFAIHYGGAIRHLIWDTAKELTLKGVYRTGYALIGF 187
Query: 115 SILT 118
+ +
Sbjct: 188 TAVL 191
>gi|224020960|ref|YP_002608193.1| succinate dehydrogenase subunit 3 [Carica papaya]
gi|170522372|gb|ACB20482.1| succinate dehydrogenase subunit 3 [Carica papaya]
Length = 108
Score = 81.3 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RPLSPHL IY+ T I HRI+G+ +L T V+ F+ FC+ G + Y
Sbjct: 1 MNILRPLSPHLPIYKPQLTSTFPISHRISGA--FLATIVLFFYLFCLKIGFICFTYENFY 58
Query: 64 MDGSV-FEVCLF---LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQ 106
++ L + A+ +H+ G+R+L+ D S L +I +
Sbjct: 59 QFFFYSSKLILISAEIAALALSYHLYNGVRHLLTDFSGFLFLRIGRK 105
>gi|295311709|ref|YP_003587361.1| succinate dehydrogenase subunit 3 [Cucurbita pepo]
gi|259156837|gb|ACV96698.1| succinate dehydrogenase subunit 3 [Cucurbita pepo]
Length = 105
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL---SSL 60
+ RPLSPHL IY+ T SI HRI+G+ +L T V+ F+ C+ G S
Sbjct: 1 MNILRPLSPHLPIYKPQLTSTFSIFHRISGA--FLATLVLFFYLLCLKMGLICFTHESFY 58
Query: 61 RCYMDGSVFEVCLFLYT-WAVIHHMLGGIRYLIWDV 95
R + S + T A+ +H+ G+R+L+ D
Sbjct: 59 RFFFYSSKLILISVEITALALSYHLYKGVRHLLTDF 94
>gi|254283025|ref|ZP_04957993.1| succinate dehydrogenase, cytochrome b556 subunit [gamma
proteobacterium NOR51-B]
gi|219679228|gb|EED35577.1| succinate dehydrogenase, cytochrome b556 subunit [gamma
proteobacterium NOR51-B]
Length = 111
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 43/92 (46%)
Query: 18 RLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYT 77
+L T + SI HR++G ++ + ++V+ E + + L + V + L+L
Sbjct: 2 KLPVTAWASIAHRVSGVALFGMSILMVWALDASLASEQSFNELAAVLSSPVAKAILWLVA 61
Query: 78 WAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
A+ +H L G+++++ D + A+
Sbjct: 62 VALTYHSLAGVKHIVMDFGYGETLEGGVFGAR 93
>gi|78711824|ref|NP_001030590.1| succinate dehydrogenase cytochrome b560 subunit, mitochondrial
isoform 4 precursor [Homo sapiens]
gi|78096637|dbj|BAE46977.1| succinate dehydrogenase complex, subunit C delta2+3 alternative
splicing variant [Homo sapiens]
Length = 116
Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Query: 19 LIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSLRCYMDGS-VFEVCLFLY 76
M +SI HR TG + G + + N E L ++ G + F
Sbjct: 8 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL 67
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ +++H GIR+L+WD+ L Q
Sbjct: 68 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 99
>gi|254874087|ref|ZP_05246797.1| sdhC, succinate dehydrogenase, cytochrome b556 [Francisella
tularensis subsp. tularensis MA00-2987]
gi|254840086|gb|EET18522.1| sdhC, succinate dehydrogenase, cytochrome b556 [Francisella
tularensis subsp. tularensis MA00-2987]
Length = 165
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 40/89 (44%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
Y T SI+HRI+G V+ + P+ V G + S F V +L+
Sbjct: 46 YNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQTVTVLTKSWFSVFFWLF 105
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIAT 105
++ +H+ GIR++I D+ K+A
Sbjct: 106 LSSITYHVYAGIRHMIMDMGFGESMKVAK 134
>gi|148652073|ref|YP_001279166.1| succinate dehydrogenase, cytochrome b556 subunit [Psychrobacter sp.
PRwf-1]
gi|148571157|gb|ABQ93216.1| succinate dehydrogenase subunit C [Psychrobacter sp. PRwf-1]
Length = 125
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 64/127 (50%), Gaps = 8/127 (6%)
Query: 4 IKNNRPLSPHL-QIYRL--IPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+K+NRP++ L Q+ + PT SI+HRI+G +++L PV+++ ++
Sbjct: 1 MKSNRPINLPLSQVISVNSSPTARASILHRISGIILFLLIPVMLWLLQTSLYSPQDFLAV 60
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
D + +++ A +H + GI++L D+ + + + ++ + + + ++
Sbjct: 61 ---FDNVLVRFVAWIFVAATAYHFVMGIKHLFADMGFNEELQSGRTASIVSFVIAAILIV 117
Query: 121 I--VWII 125
+ VW++
Sbjct: 118 LSFVWVM 124
>gi|331004886|ref|ZP_08328303.1| Succinate dehydrogenase cytochrome b-556 subunit [gamma
proteobacterium IMCC1989]
gi|330421340|gb|EGG95589.1| Succinate dehydrogenase cytochrome b-556 subunit [gamma
proteobacterium IMCC1989]
Length = 126
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 1/123 (0%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH-TLSSLRC 62
+ +NRP++ L T VSI+HRI + ++G ++ + +
Sbjct: 1 MSDNRPVNLDLGTVSFPITAIVSILHRICAVISWVGLGFLLCALCYVLSSPEDYYVLANA 60
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + + A ++ +++LI D D ++ I I+ ++
Sbjct: 61 LNTNFIAQFVAWGLLTAFGYYCAATVKHLIQDFGFFEDFAGGKCISWAAIAVGIVLSVLA 120
Query: 123 WII 125
++
Sbjct: 121 GVL 123
>gi|322703195|gb|EFY94808.1| succinate dehydrogenase cytochrome b560 subunit [Metarhizium
anisopliae ARSEF 23]
Length = 180
Score = 80.5 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 6/126 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFV-SIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
+ + RP+SP+L IY++ T S RITG + V + L +
Sbjct: 49 LVKQRLQRPVSPNLGIYKIEQTWLGHSAWTRITGCTLSAAAYVYFGAYLVAPLAGWHLET 108
Query: 60 LRCYMDGSVFEV-----CLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
+ F + +H + G+R+L +D+ K + + +
Sbjct: 109 ASLASAFAALPFAVKGGVKFFLGFPFAYHFINGLRHLWFDLGKGFAKPSIKRGEMVLWTS 168
Query: 115 SILTVL 120
SIL+ L
Sbjct: 169 SILSGL 174
>gi|326561803|gb|EGE12138.1| succinate dehydrogenase, cytochrome b556 subunit [Moraxella
catarrhalis 7169]
gi|326563240|gb|EGE13507.1| succinate dehydrogenase, cytochrome b556 subunit [Moraxella
catarrhalis 46P47B1]
gi|326563354|gb|EGE13619.1| succinate dehydrogenase, cytochrome b556 subunit [Moraxella
catarrhalis 12P80B1]
gi|326565892|gb|EGE16053.1| succinate dehydrogenase, cytochrome b556 subunit [Moraxella
catarrhalis 103P14B1]
gi|326568971|gb|EGE19040.1| succinate dehydrogenase, cytochrome b556 subunit [Moraxella
catarrhalis BC1]
gi|326571947|gb|EGE21952.1| succinate dehydrogenase, cytochrome b556 subunit [Moraxella
catarrhalis BC8]
gi|326575458|gb|EGE25383.1| succinate dehydrogenase, cytochrome b556 subunit [Moraxella
catarrhalis 101P30B1]
gi|326576453|gb|EGE26361.1| succinate dehydrogenase, cytochrome b556 subunit [Moraxella
catarrhalis CO72]
gi|326577924|gb|EGE27788.1| succinate dehydrogenase, cytochrome b556 subunit [Moraxella
catarrhalis O35E]
Length = 129
Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Query: 1 MSSIKNNRPLSPHLQ----IYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP++ L + P SI+HR++G V++L PV++ + +
Sbjct: 1 MPAVKSNRPINLPLSQVIAVNSKSPIAMASILHRVSGIVLFLLVPVMLCILQTSLSSADS 60
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+++ + +++ A +H + GI++L+ D + + K A I+ + +
Sbjct: 61 FAAV---FNNIALRFVAWIFVAATAYHFVMGIKHLLADAGMNEELKSGRTAAVISFVIAA 117
Query: 117 LTVLI--VWII 125
+ ++ VW++
Sbjct: 118 VLIVASFVWVM 128
>gi|209520502|ref|ZP_03269260.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
H160]
gi|209499040|gb|EDZ99137.1| succinate dehydrogenase, cytochrome b556 subunit [Burkholderia sp.
H160]
Length = 138
Score = 80.1 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 7/128 (5%)
Query: 2 SSIKNNRPLSPH------LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEH 55
+ K RP + L YRL VSI+HR++G ++++ P +++ F
Sbjct: 3 ETAKRPRPEFRNIGIGQILTAYRLPLAGRVSILHRMSGGLLFIFLPFLLYLFEQSLTSAA 62
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMAKINIIA 114
T + + + V ++ + WA + H GIRYL D S + K+ + A + ++
Sbjct: 63 TFDAFKALLANVVAKLITLVLAWAFLLHFCAGIRYLRMDTSHSAVSKQKGKETAVVVVVV 122
Query: 115 SILTVLIV 122
S L +
Sbjct: 123 STLLTIAF 130
>gi|296229474|ref|XP_002760249.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like isoform 2 [Callithrix jacchus]
Length = 116
Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 19 LIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSLRC-YMDGSVFEVCLFLY 76
M +SI HR TG + G + + N E L ++ Y+ ++ F
Sbjct: 8 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLYLGPALIHTAKFAL 67
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ +++H GIR+L+WD+ L Q
Sbjct: 68 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSG 99
>gi|326569270|gb|EGE19331.1| succinate dehydrogenase, cytochrome b556 subunit [Moraxella
catarrhalis BC7]
Length = 129
Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Query: 1 MSSIKNNRPLSPHLQ----IYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT 56
M ++K+NRP++ L + P SI+HR++G V++L PV++ + +
Sbjct: 1 MPAVKSNRPINLPLSQVIAVNSKSPIAMASILHRMSGIVLFLLVPVMLCILQTSLSSADS 60
Query: 57 LSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASI 116
+++ + +++ A +H + GI++L+ D + + K A I+ + +
Sbjct: 61 FAAV---FNNIALRFVAWIFVAATAYHFVMGIKHLLADAGMNEELKSGRTAAVISFVIAA 117
Query: 117 LTVLI--VWII 125
+ ++ VW++
Sbjct: 118 VLIVASFVWVM 128
>gi|332977198|gb|EGK13995.1| succinate dehydrogenase cytochrome b558 subunit [Psychrobacter sp.
1501(2011)]
Length = 125
Score = 79.3 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 4 IKNNRPLSPHL-QIYRL--IPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+K+NRP++ L Q+ + PT SI+HRI+G ++++ PV+++
Sbjct: 1 MKSNRPINLPLSQVISVNSSPTARASILHRISGIILFILIPVMLWLLQTSIYSPQHFD-- 58
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
D V +++ A +H + GI++L D+ + + + ++++ + + ++
Sbjct: 59 -AIFDNMVLRFIAWIFVAATAYHFVMGIKHLFADMGFNEELQSGRTASIVSLVIAAILIV 117
Query: 121 I--VWII 125
+ +W++
Sbjct: 118 LSFIWVM 124
>gi|221116705|ref|XP_002160658.1| PREDICTED: similar to Succinate dehydrogenase cytochrome b560
subunit, mitochondrial, partial [Hydra magnipapillata]
Length = 113
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 2/106 (1%)
Query: 19 LIPTMFVSIVHRITGSVVY-LGTPVVVFWFFCIANGEHTLSSLRCY-MDGSVFEVCLFLY 76
+S HR TG + + V E + +R + V FL
Sbjct: 1 FELPGLLSGTHRFTGLAMSGIVFTVGSAALLLPGGAESYIDMIRALNLPIWVLAPAKFLI 60
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + +H + G+R+LIWD + K + + SI + +
Sbjct: 61 AFPLCYHTVNGVRHLIWDTGRGFEMKTLYKTGYFAVATSIALTIGI 106
>gi|119572982|gb|EAW52597.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa, isoform CRA_a [Homo sapiens]
gi|119572983|gb|EAW52598.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa, isoform CRA_a [Homo sapiens]
Length = 105
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 23 MFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSLRCYMDGS-VFEVCLFLYTWAV 80
M +SI HR TG + G + + N E L ++ G + F + +
Sbjct: 1 MAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPL 60
Query: 81 IHHMLGGIRYLIWDVSLCLDKKIATQMA 108
++H GIR+L+WD+ L Q
Sbjct: 61 MYHTWNGIRHLMWDLGKGLKIPQLYQSG 88
>gi|224456308|ref|ZP_03664781.1| succinate dehydrogenase, cytochrome b556 [Francisella tularensis
subsp. tularensis MA00-2987]
Length = 134
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 40/89 (44%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
Y T SI+HRI+G V+ + P+ V G + S F V +L+
Sbjct: 15 YNFPITAISSIMHRISGVVLIIAIPLCVVAMNYALAGPDGYQQTVTVLTKSWFSVFFWLF 74
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIAT 105
++ +H+ GIR++I D+ K+A
Sbjct: 75 LSSITYHVYAGIRHMIMDMGFGESMKVAK 103
>gi|295311666|ref|YP_003587250.1| succinate dehydrogenase subunit 3 [Citrullus lanatus]
gi|295311667|ref|YP_003587234.1| succinate dehydrogenase subunit 3 [Citrullus lanatus]
gi|259156794|gb|ACV96656.1| succinate dehydrogenase subunit 3 [Citrullus lanatus]
gi|259156795|gb|ACV96657.1| succinate dehydrogenase subunit 3 [Citrullus lanatus]
Length = 95
Score = 79.3 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR-- 61
+ RPLSPHL IY+ T SI HRI+G+ +L T V+ F+ C+ G +
Sbjct: 1 MNILRPLSPHLPIYKPQLTSTFSIFHRISGA--FLATLVLFFYLLCLKMGLICFTYSNFY 58
Query: 62 --CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV 95
+ + + + A+ +H+ G+R+L+ D
Sbjct: 59 RFFFYSSKLILISAEITALALSYHLYNGVRHLLTDF 94
>gi|118485781|gb|ABK94739.1| unknown [Populus trichocarpa]
Length = 282
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHL IY SIV+RI+G+ YL V+ F C+ G + Y
Sbjct: 194 RPLSPHLPIYSPQVHSTFSIVNRISGA--YLSALVLFFCLICLKAGSICFTHYNFYQFLF 251
Query: 68 V-FEVCL----FLYTWAVIHHMLGGIRYLI 92
++ L A+ +H+ G+R+L+
Sbjct: 252 YSSKLILPVVDVTAALALTYHLFYGVRHLL 281
>gi|323347731|gb|EGA81995.1| Sdh3p [Saccharomyces cerevisiae Lalvin QA23]
Length = 143
Score = 78.9 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS- 59
++ + RP+SPHL IY+ T ++S HRI+ ++ LG + F L++
Sbjct: 13 LNKQRAXRPISPHLTIYQPQLTWYLSSFHRISLVLMGLGFYLFTILFGVSGLLGLGLTTE 72
Query: 60 -LRCYMDGSVFEVCLFLYTWAVIH----HMLGGIRYLIWDVSLCLDKKIATQMAKINIIA 114
+ + ++ + + + H G IR+LIWD + L K + I
Sbjct: 73 KVSNWYHQKFSKITEWSIKGSFAYLFAIHYGGAIRHLIWDTAKELTLKGVYRTGYALIGF 132
Query: 115 SILT 118
+ +
Sbjct: 133 TAVL 136
>gi|302878557|ref|YP_003847121.1| succinate dehydrogenase, cytochrome b556 subunit [Gallionella
capsiferriformans ES-2]
gi|302581346|gb|ADL55357.1| succinate dehydrogenase, cytochrome b556 subunit [Gallionella
capsiferriformans ES-2]
Length = 124
Score = 78.6 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ RP L + +L FVSI+HRI+G ++L P+ + T +SL
Sbjct: 1 MLKKRPKHLALHLIKLPLPGFVSILHRISGLALFLALPLFLLMLQYSLRSVETYTSLMDV 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+ + ++ L W+ +HH GIRYL D+ + A +KI ++ S+L +++
Sbjct: 61 LSHPLAKLVLLGLLWSFLHHFCAGIRYLAIDLHYISNLAEARSSSKIVMVVSLLLTVLIG 120
Query: 124 I 124
+
Sbjct: 121 V 121
>gi|119473649|ref|XP_001258700.1| Cytochrome b subunit of succinate dehydrogenase, putative
[Neosartorya fischeri NRRL 181]
gi|119406853|gb|EAW16803.1| Cytochrome b subunit of succinate dehydrogenase, putative
[Neosartorya fischeri NRRL 181]
Length = 183
Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 6/126 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVY-----LGTPVVVFWFFCIANGEH 55
++ + RP++PHL IY+ S + R TG ++ GT +V +
Sbjct: 52 LARQRLRRPVAPHLSIYKWQVHSVSSALERNTGLLLAGSLYLFGTSYLVAPWLGWDLSSA 111
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCL-DKKIATQMAKINIIA 114
L + + + + W H+ GIRY++ L + ++A I +
Sbjct: 112 ALVAAFGSLPVAAKFLLKLSVAWPFTFHLFNGIRYVVSSTGYTLNSRSQFIKIAWAVIGS 171
Query: 115 SILTVL 120
S L +
Sbjct: 172 SALAAV 177
>gi|255073203|ref|XP_002500276.1| predicted protein [Micromonas sp. RCC299]
gi|226515538|gb|ACO61534.1| predicted protein [Micromonas sp. RCC299]
Length = 202
Score = 77.8 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 13/127 (10%)
Query: 7 NRPLSPHL-------QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
RPLSP + Y+ SI +R+TG V+ C G L +
Sbjct: 73 KRPLSPDVFDIDGSSTHYKFPVVALSSITNRVTGCVLSGAVAF--GGSLCAVGGPEALPA 130
Query: 60 LRCYMDGSVFEVC---LFLYTWAVIHHMLGGIRYLIWD-VSLCLDKKIATQMAKINIIAS 115
+V + L + ++H LGG R+++WD + +D A + AS
Sbjct: 131 FIEGFKSTVPFLVFPAKALVGFPFVYHTLGGFRHIVWDKTTNGIDNASAKASSIGLFAAS 190
Query: 116 ILTVLIV 122
+
Sbjct: 191 GAVTAAL 197
>gi|325123218|gb|ADY82741.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
calcoaceticus PHEA-2]
Length = 120
Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 20 IPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL-RCYMDGSVFEVCLFLYTW 78
P SI+HR++G +V+L PV+++ + + + ++++
Sbjct: 11 SPVAIASILHRLSGVIVFLLVPVLLWILDKSLSSPEGFDYVKNVVFGNILVRFVVWVFAA 70
Query: 79 AVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+I H + G+++L+ D+ + + A I++I S++ ++ ++
Sbjct: 71 GLIFHFIAGVKHLLADLGFAEELQSGRIAATISLILSVVAIIAAFV 116
>gi|220934637|ref|YP_002513536.1| succinate dehydrogenase, cytochrome b556 subunit [Thioalkalivibrio
sp. HL-EbGR7]
gi|219995947|gb|ACL72549.1| succinate dehydrogenase, cytochrome b556 subunit [Thioalkalivibrio
sp. HL-EbGR7]
Length = 126
Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 60/118 (50%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
+ RP+ +L RL SI HRI+G +++L P+ +F F GE + +
Sbjct: 3 REGRPVFLNLLKIRLPVPGVASIAHRISGVLLFLAIPLFLFIFQRSLQGEAGYAEALALL 62
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ + + W+++HH L GIRYL+ DV + +++ A + A +I + + +I+
Sbjct: 63 RHPLVMLISLVLLWSLLHHWLAGIRYLLIDVDVGVERTAARKSAWTVLILAPVLTVII 120
>gi|71892105|ref|YP_277837.1| succinate dehydrogenase cytochrome b-556 subunit [Candidatus
Blochmannia pennsylvanicus str. BPEN]
gi|71796211|gb|AAZ40962.1| succinate dehydrogenase cytochrome b-556 subunit [Candidatus
Blochmannia pennsylvanicus str. BPEN]
Length = 135
Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/124 (20%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
KN RP+ +++ R T SI+HRI+G ++++ +++ + + + ++
Sbjct: 4 KNQRPIYLNIRTIRFPITAITSILHRISGILLFIIIGPILWILKLSLSSNNEFCKIHRFL 63
Query: 65 --DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMAKINIIASILTVLI 121
+ +F+ + T + +H++ GIR ++ D L I AK+ + +IL +
Sbjct: 64 LMNHYIFQFVFWTVTILLSYHIIAGIRQILMDFGCLNQTLLIGKISAKVVFVLTILLSIF 123
Query: 122 VWII 125
+ I+
Sbjct: 124 IGIL 127
>gi|296112295|ref|YP_003626233.1| succinate dehydrogenase subunit C [Moraxella catarrhalis RH4]
gi|295919989|gb|ADG60340.1| succinate dehydrogenase subunit C [Moraxella catarrhalis RH4]
Length = 126
Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 62/128 (48%), Gaps = 9/128 (7%)
Query: 4 IKNNRPLSPHLQ----IYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
+K+NRP++ L + P SI+HR++G V++L PV++ + + ++
Sbjct: 1 MKSNRPINLPLSQVIAVNSKSPIAMASILHRVSGIVLFLLVPVMLCILQTSLSSADSFAA 60
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ + +++ A +H + GI++L+ D + + K A I+ + + + +
Sbjct: 61 V---FNNIALRFVAWIFVAATAYHFVMGIKHLLADAGMNEELKSGRTAAVISFVIAAVLI 117
Query: 120 LI--VWII 125
+ VW++
Sbjct: 118 VASFVWVM 125
>gi|254796445|ref|YP_003081281.1| succinate dehydrogenase, cytochrome b556 subunit [Neorickettsia
risticii str. Illinois]
gi|254589682|gb|ACT69044.1| succinate dehydrogenase, cytochrome b556 subunit [Neorickettsia
risticii str. Illinois]
Length = 156
Score = 77.4 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL--SSLRCYMDG 66
PLSP L YR +SI HR++G+ ++ T ++ F + + L + G
Sbjct: 35 PLSPSLFAYRFPLAAILSISHRLSGAFLFFYTGFFSWYVFACFYMPSSFLHTVLSPFFSG 94
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINII 113
+ L + + +H+ G+R+L WD L + + II
Sbjct: 95 YLAGFLLCFFLFFFCYHLCSGVRHLFWDFCTGLSQASVKVSNFVVII 141
>gi|184159280|ref|YP_001847619.1| succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Acinetobacter baumannii ACICU]
gi|213157653|ref|YP_002320451.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii AB0057]
gi|215482489|ref|YP_002324675.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii AB307-0294]
gi|239502289|ref|ZP_04661599.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii AB900]
gi|301512217|ref|ZP_07237454.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii AB058]
gi|301595936|ref|ZP_07240944.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii AB059]
gi|183210874|gb|ACC58272.1| Succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Acinetobacter baumannii ACICU]
gi|213056813|gb|ACJ41715.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii AB0057]
gi|213987074|gb|ACJ57373.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii AB307-0294]
gi|322509193|gb|ADX04647.1| sdhC [Acinetobacter baumannii 1656-2]
gi|323519221|gb|ADX93602.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter
baumannii TCDC-AB0715]
Length = 120
Score = 77.0 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 20 IPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL-RCYMDGSVFEVCLFLYTW 78
P SI+HR++G +V+L PV+++ + + + ++++
Sbjct: 11 SPVAIASILHRLSGVIVFLLVPVLLWILDKSLSSPEGFDYVKNVVFGNILVRFVVWVFVA 70
Query: 79 AVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+I H + G+++L+ D+ + + A I++I S++ ++ ++
Sbjct: 71 GLIFHFIAGVKHLLADLGFAEELQSGRIAATISLILSVVAIIAAFV 116
>gi|303285256|ref|XP_003061918.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456329|gb|EEH53630.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 208
Score = 77.0 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 13/127 (10%)
Query: 7 NRPLSPH-LQI------YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
RP+SP L I Y+ SI +R+TG V+ G G TL +
Sbjct: 79 KRPMSPDVLDIDGERVHYKFPAVALSSITNRVTGCVLSGGVAF--GGVLSFVGGPETLPA 136
Query: 60 LRCYMDGSVFEVC---LFLYTWAVIHHMLGGIRYLIWD-VSLCLDKKIATQMAKINIIAS 115
+ + + + ++H LGG R+L WD + +D + A + AS
Sbjct: 137 FVEGFKSWLPFMVYPTKLAFGFPFVYHTLGGFRHLYWDKTTEGIDNQSAKASSIALFAAS 196
Query: 116 ILTVLIV 122
++
Sbjct: 197 GGISAMI 203
>gi|46110198|ref|XP_382157.1| hypothetical protein FG01981.1 [Gibberella zeae PH-1]
Length = 183
Score = 77.0 bits (189), Expect = 9e-13, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 9/133 (6%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMF-VSIVHRITGSVVYLGTPVVVFWFFC---IANGEHT 56
+ + + NRP++P+L IY++ F S RITG +V + + + G +
Sbjct: 51 LVNQRLNRPVTPNLGIYKIGQVWFSASAWTRITGLIVGGTAYLTLGAHAVAPHLGLGFDS 110
Query: 57 LSSLRCYMDGSVFEVCLF---LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINII 113
++ + + L + +H + GIR+L++D+ + K +
Sbjct: 111 VALVSAFGALPFVAKAAIKFSLLGFPFSYHFINGIRHLVFDLGIGYKKAQFKKSEVATWT 170
Query: 114 ASIL--TVLIVWI 124
S++ VL W+
Sbjct: 171 LSVIGGLVLAFWL 183
>gi|299768983|ref|YP_003731009.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter sp.
DR1]
gi|298699071|gb|ADI89636.1| succinate dehydrogenase, cytochrome b556 subunit [Acinetobacter sp.
DR1]
Length = 120
Score = 76.6 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 20 IPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL-RCYMDGSVFEVCLFLYTW 78
P SI+HR++G +V+L PV+++ + + + ++++
Sbjct: 11 SPVAIASILHRLSGVIVFLLVPVLLWILDKSLSSPEGFDYVKNVVFGNILVRFIVWVFVA 70
Query: 79 AVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
++ H + G+++L+ D+ + + A I++I S++ ++ +I
Sbjct: 71 GLLFHFIAGVKHLLADLGFAEELQSGRIAATISLILSVVAIIAAFI 116
>gi|114560909|ref|XP_001173993.1| PREDICTED: succinate dehydrogenase complex, subunit C isoform 2
[Pan troglodytes]
Length = 175
Score = 76.6 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 28/125 (22%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT--------------PVVVFWF 47
+I +NRPLSPH+ IY M +SI HR TG + G P +
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGMYMYGVSELLTSGNLPALASQI 103
Query: 48 FCIANGEHTLSSLRCYMDGS----VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKI 103
+ ++ CY+ V+++ WA +L+WD+ L
Sbjct: 104 KKVLLSPSYFTTADCYILAPCMWEVWKMKTAFAPWA----------HLMWDLGKGLKIPQ 153
Query: 104 ATQMA 108
Q
Sbjct: 154 LYQSG 158
>gi|323649888|ref|YP_004237261.1| succinate dehydrogenase subunit 3 [Ricinus communis]
gi|322394268|gb|ADW96025.1| succinate dehydrogenase subunit 3 [Ricinus communis]
Length = 103
Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR-- 61
+ RPLSPHL IY+ T I HRI+G+ +L T V F+ C+ +
Sbjct: 1 MNILRPLSPHLPIYKPQLTSTYPISHRISGA--FLATIVFFFYVLCLKISLICFTYENFY 58
Query: 62 --CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIA 104
+ + ++ + + A+ +H+ G+R+L+ D S +I
Sbjct: 59 QFFFFSSKLIKISVEMTALALSYHLYNGLRHLLTDFSGFFFLRIG 103
>gi|291336334|gb|ADD95894.1| succinate dehydrogenase cytochrome b556 subunit [uncultured
marine bacterium MedDCM-OCT-S08-C1068]
Length = 70
Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
++N RPLSPH+QIYR + VSI HRITG + +G ++ W + G+ + + +
Sbjct: 1 MENKRPLSPHIQIYRWHISSLVSISHRITGIINIVGITLICIWVSLLVLGDANYNFINQF 60
Query: 64 MDGSVFEVC 72
++ + +
Sbjct: 61 LNSVLGKFL 69
>gi|88608119|ref|YP_505948.1| succinate dehydrogenase, cytochrome b556 subunit [Neorickettsia
sennetsu str. Miyayama]
gi|88600288|gb|ABD45756.1| succinate dehydrogenase, cytochrome b556 subunit [Neorickettsia
sennetsu str. Miyayama]
Length = 140
Score = 75.5 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL--SSLRCYMDG 66
PLSP L YR +SI HR++G+ ++ T ++ F + + L + G
Sbjct: 19 PLSPSLFAYRFPLAAILSISHRLSGAFLFFYTGFFSWYVFACFYMPSSFLHTVLSPFFSG 78
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIAS 115
+ L + + +H+ G+R+L WD L + + IIA+
Sbjct: 79 YLAGFLLCFFLFFFCYHLCSGVRHLFWDFCTGLSQASVKVSNFLVIIAA 127
>gi|114631797|ref|XP_507919.2| PREDICTED: similar to QPS1 isoform 3 [Pan troglodytes]
Length = 132
Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ NRP+SPH+ IY M ++I HR TG+ + G + + N E L +
Sbjct: 44 KNTGLNRPVSPHVTIYSWSLPMAMAICHRDTGTALRAGASLFGMSALLLPGNFESYLELV 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGI 88
+ G + F + ++++ G+
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYYTWNGV 132
>gi|107101014|ref|ZP_01364932.1| hypothetical protein PaerPA_01002044 [Pseudomonas aeruginosa PACS2]
gi|313106594|ref|ZP_07792821.1| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa 39016]
gi|310879323|gb|EFQ37917.1| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa 39016]
Length = 86
Score = 74.7 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 13/85 (15%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 42 VVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK 101
+++F + E ++ + + ++ ++ A+++H++ G+R+L+ D +
Sbjct: 1 MLLFALDKSLSSEEGFEQVKACLTSPLAKLVIWGLLSALLYHLVAGVRHLVMDAGVGETL 60
Query: 102 KIATQMAKINIIASILTVLI--VWI 124
+ + +KI I +++ +++ VW+
Sbjct: 61 EGGKRGSKIVIAIAVVLIVLAGVWV 85
>gi|159462554|ref|XP_001689507.1| succinate dehydrogenase subunit b560 [Chlamydomonas reinhardtii]
gi|158283495|gb|EDP09245.1| succinate dehydrogenase subunit b560 [Chlamydomonas reinhardtii]
Length = 203
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 6 NNRPLSPH-LQI------YRLIPTMFVSIVHRITGSVVYLG-TPVVVFWFFCIANGEHTL 57
RPLSP ++I Y+ SI +R+TG + +G VF +G
Sbjct: 71 KKRPLSPDVMEIDNKSAHYKFPLGALSSITNRVTGVALSVGFAGAGVFALRGSLDG---- 126
Query: 58 SSLRCYMDGSVFEV-CLFLYTWAVIHHMLGGIRYLIWDVSL 97
+ + FL ++A+I+H LGG+R+++WDVS
Sbjct: 127 -VVAACAGSFLIGFPLKFLVSYAIIYHWLGGLRHIVWDVSK 166
>gi|11465650|ref|NP_049321.1| succinate:cytochrome c oxidoreductase subunit 3 [Porphyra purpurea]
gi|1705530|sp|P80478|C560_PORPU RecName: Full=Succinate dehydrogenase cytochrome b560 subunit;
AltName: Full=Succinate dehydrogenase, subunit III
gi|4106957|gb|AAD03124.1| succinate:cytochrome c oxidoreductase subunit 3 [Porphyra purpurea]
Length = 125
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
NRP+SPHL IY + SI HRI+G ++ + + + L +
Sbjct: 3 NINRPISPHLTIYNTQKSSLFSIWHRISGVAMFTLIASPPLFLKLATFSYKSFNILDLML 62
Query: 65 DGSVFEVCLFLYTWA--VIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ S + F+ + ++H++ GIR+ +WD + ++ + + + + L +L
Sbjct: 63 NNSSLILPWFIVIISVIFLYHIINGIRHFLWDSVVNVNTESIIKDSNTLLALVFLIMLFK 122
Query: 123 WII 125
+I+
Sbjct: 123 FIL 125
>gi|119570485|gb|EAW50100.1| hCG2040215 [Homo sapiens]
Length = 132
Score = 74.7 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSL 60
+ NRP+SPH+ IY M ++I H TG+ + G + + N E L +
Sbjct: 44 KNTGLNRPVSPHVTIYSWSLPMAMAICHHDTGTALRAGASLFGMSALLLPGNFESYLELV 103
Query: 61 RCYMDGS-VFEVCLFLYTWAVIHHMLGGI 88
+ G + F + +++H G+
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGV 132
>gi|307103975|gb|EFN52231.1| hypothetical protein CHLNCDRAFT_54553 [Chlorella variabilis]
Length = 476
Score = 74.3 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 18/134 (13%)
Query: 7 NRPLSPHL-------QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
RP+SPH+ Y+ SI +R TG ++ +GT + + +
Sbjct: 342 KRPVSPHVFEIDGRQPHYKFPLGAISSITNRATGCMLSVGTG--AAAYIALTGDLGAAIA 399
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWD-VSLC--------LDKKIATQMAKI 110
+ + +++H L G+R+L WD L+ +K+
Sbjct: 400 AFKDAAPLLVFPAKAAVAFPLVYHYLAGVRHLYWDHAKYGNQADKDSPLEVPAVEASSKL 459
Query: 111 NIIASILTVLIVWI 124
+ S ++ +
Sbjct: 460 LLGGSAAATVLAAV 473
>gi|326387615|ref|ZP_08209221.1| succinate dehydrogenase subunit C [Novosphingobium nitrogenifigens
DSM 19370]
gi|326207661|gb|EGD58472.1| succinate dehydrogenase subunit C [Novosphingobium nitrogenifigens
DSM 19370]
Length = 120
Score = 74.3 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 23 MFVSIVHRITGSVVYLGTPVVV-FWFFCIANGEHTLSSLRCY-----------MDGSVFE 70
M VSI+HR+TG+ + ++ +W IA GE + + + + + +
Sbjct: 1 MLVSILHRVTGNGLAFAGLALLLWWVGAIAGGEQSYQTFISFVWTGAGSPLAALTAILAK 60
Query: 71 VCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDI 128
+ L TWA HM G+R+L+ D+ + + + + + ++ S+L + W +
Sbjct: 61 LVLVGLTWAFFQHMASGLRHLVLDIGVGYELHTNARWSVLTLVFSVLATALFWAFVLM 118
>gi|257453555|ref|ZP_05618845.1| succinate dehydrogenase, cytochrome b556 subunit [Enhydrobacter
aerosaccus SK60]
gi|257449013|gb|EEV23966.1| succinate dehydrogenase, cytochrome b556 subunit [Enhydrobacter
aerosaccus SK60]
Length = 126
Score = 74.3 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 4 IKNNRP----LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS 59
+K+NRP LS + + P SI HR++G V++L PV+++ F +
Sbjct: 1 MKSNRPIDLPLSQVINVNSKNPIALASITHRVSGVVLFLLIPVMLWIFQTSLASAEGFA- 59
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
+ + +++ A+ +H + G ++L D+ + + I + +
Sbjct: 60 --DIFTNPLVKFLAWIFVAALGYHFVMGFKHLFADMGMNEELNSGRTATFIGFVLA---- 113
Query: 120 LIVWIIKDIV 129
+W++ V
Sbjct: 114 -ALWVVGSFV 122
>gi|292490834|ref|YP_003526273.1| succinate dehydrogenase, cytochrome b556 subunit [Nitrosococcus
halophilus Nc4]
gi|291579429|gb|ADE13886.1| succinate dehydrogenase, cytochrome b556 subunit [Nitrosococcus
halophilus Nc4]
Length = 125
Score = 73.6 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 61/118 (51%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM 64
++RP +L + R VS +HRI+G ++ L PV+V+ + + +
Sbjct: 3 NHHRPTFLNLALIRFPANAIVSALHRISGVILSLLVPVLVYLLDLSLQDSEGFAQVIGFF 62
Query: 65 DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ ++ + WA++HH+ GIR+L++D+ + + + A+I +++++ L++
Sbjct: 63 NSLGVKLVGMVVLWALLHHIFAGIRFLLFDIHVGVKDYRPSWSARIANVSALVVTLLI 120
>gi|159462552|ref|XP_001689506.1| succinate dehydrogenase subunit b560 [Chlamydomonas reinhardtii]
gi|158283494|gb|EDP09244.1| succinate dehydrogenase subunit b560 [Chlamydomonas reinhardtii]
Length = 183
Score = 73.6 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 6 NNRPLSPH-LQI------YRLIPTMFVSIVHRITGSVVYLG-TPVVVFWFFCIANGEHTL 57
RPLSP ++I Y+ SI +R+TG + +G VF +G
Sbjct: 51 KKRPLSPDVMEIDNKSAHYKFPLGALSSITNRVTGVALSVGFAGAGVFALRGSLDG---- 106
Query: 58 SSLRCYMDGSVFEV-CLFLYTWAVIHHMLGGIRYLIWDVSL 97
+ + FL ++A+I+H LGG+R+++WDVS
Sbjct: 107 -VVAACAGSFLIGFPLKFLVSYAIIYHWLGGLRHIVWDVSK 146
>gi|213420890|ref|ZP_03353956.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhi str.
E01-6750]
Length = 97
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 34/75 (45%)
Query: 3 SIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC 62
++K RP++ LQ R T SI+HR++G + ++ ++++ +
Sbjct: 9 NVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFIAVGILLWLLGTSLSSPEGFQQAAD 68
Query: 63 YMDGSVFEVCLFLYT 77
MDG + + ++
Sbjct: 69 IMDGFIVKFIMWASL 83
>gi|149529879|ref|XP_001518823.1| PREDICTED: similar to succinate dehydrogenase complex, subunit C,
integral membrane protein, 15kDa [Ornithorhynchus
anatinus]
Length = 157
Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 40 TPVVVFWFFCIANGEHTLSSLRCYMDGS-VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLC 98
+ + + E L ++ G + F + ++H GIR+L+WD+
Sbjct: 71 SLFGLAALLLPGSFESQLELVKSLSLGPALIHTAKFALAFPFMYHTWNGIRHLVWDLGKG 130
Query: 99 LDKKIATQMAKINIIASILTVLIVWII 125
L Q ++ ++L+ + + +
Sbjct: 131 LKIPQLHQSGVAVLVLTVLSSVGLAAL 157
>gi|115399864|ref|XP_001215521.1| predicted protein [Aspergillus terreus NIH2624]
gi|114191187|gb|EAU32887.1| predicted protein [Aspergillus terreus NIH2624]
Length = 198
Score = 72.8 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 7/132 (5%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV-----YLGTPVVVFWFFCIANGEH 55
++ + RP+SPHL IYR M S + R TG ++ T +V
Sbjct: 67 LARQRLRRPVSPHLAIYRWEMNMISSAMERNTGIMLSGALYLFATAYLVSPMMGWDLSSA 126
Query: 56 TLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCL-DKKIATQMAKINIIA 114
+L + + +V F W H G+R+ + + L +++ ++A +
Sbjct: 127 SLVTAFGALPWAVKAAVKFAAAWPFTFHFFNGVRFTVAATARTLNNREQMAKIAWAMMGC 186
Query: 115 SILTVL-IVWII 125
S+++ + W +
Sbjct: 187 SVVSAAGLAWFV 198
>gi|226945049|ref|YP_002800122.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Azotobacter vinelandii DJ]
gi|226719976|gb|ACO79147.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Azotobacter vinelandii DJ]
Length = 77
Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 52 NGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKIN 111
+ E ++ Y+ + ++ + A+++H++ G+R+LI D + + T+ +KI
Sbjct: 2 SSEEGFEQVKGYLASPLVKLVAWGLVSALLYHLVAGVRHLIMDTGIGETLEGGTKGSKIV 61
Query: 112 IIASILTVLI--VWI 124
I S+ +L+ VWI
Sbjct: 62 IGVSVALILLSGVWI 76
>gi|330959060|gb|EGH59320.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. maculicola str. ES4326]
Length = 85
Score = 72.0 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 43 VVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+++ E ++ YM + ++ ++ A+++HM+ GIR+LI D + +
Sbjct: 1 MLYAMDKSLASEEGFGEVKAYMTSPLAKLIIWGLLSALLYHMVAGIRHLIMDTGVGETLE 60
Query: 103 IATQMAKINIIASILTVLI--VWI 124
+KI I S++ +L+ VWI
Sbjct: 61 GGKLGSKIVIAVSVVLILLAGVWI 84
>gi|330813447|ref|YP_004357686.1| succinate dehydrogenase cytochrome b-556 subunit [Candidatus
Pelagibacter sp. IMCC9063]
gi|327486542|gb|AEA80947.1| succinate dehydrogenase cytochrome b-556 subunit [Candidatus
Pelagibacter sp. IMCC9063]
Length = 65
Score = 72.0 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 33/64 (51%)
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ V + L +TW+ +H+L G+R+L WD+ + K A + +S L +I+
Sbjct: 2 FSSSIVGKFILVGFTWSFCYHLLNGLRHLFWDMGYGYEIKTANFSGIFVLTSSFLLTIIL 61
Query: 123 WIIK 126
W++
Sbjct: 62 WVVS 65
>gi|213646453|ref|ZP_03376506.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhi str.
J185]
Length = 104
Score = 71.2 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 14/96 (14%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 31 ITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRY 90
++G + ++ ++++ + MDG + + ++ A+ +H++ GIR+
Sbjct: 7 VSGVITFIAVGILLWLLGTSLSSPEGFQQAADIMDGFIVKFIMWGILTALAYHVIVGIRH 66
Query: 91 LIWDVSLCLDK-KIATQMAKINIIASILTVLIVWII 125
++ D + + + AKI+ + +++ L+ ++
Sbjct: 67 MLMDFGYLEETFEAGQRSAKISFVITVVLSLLAGVL 102
>gi|327480482|gb|AEA83792.1| succinate dehydrogenase (C subunit) [Pseudomonas stutzeri DSM 4166]
Length = 86
Score = 71.2 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 42 VVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK 101
+++ + +R Y+ + ++ + A+++H++ G+R+LI D
Sbjct: 1 MLLLALDTSLSSPEGFEEVRAYLGSPLAKLVSWALLSALLYHLVAGVRHLIMDSGHGETL 60
Query: 102 KIATQMAKINIIASILTVLI--VWI 124
+ +KI I+ S + +++ VWI
Sbjct: 61 EGGKLGSKIVIVVSAVLIVLAGVWI 85
>gi|255632256|gb|ACU16486.1| unknown [Glycine max]
Length = 244
Score = 70.9 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM--D 65
RPLSPHL +Y+ + +SI +RI G+ + V + + T S ++
Sbjct: 157 RPLSPHLPLYQPQLSSTLSIFNRIAGAFLAGVILVFYMIYMKLGLVSLTYDSFYQFIFYS 216
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIW 93
+ + + + AV +H+ IR+L
Sbjct: 217 SKLNLLVMEISALAVSYHLYSAIRHLFL 244
>gi|330967014|gb|EGH67274.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. actinidiae str. M302091]
Length = 81
Score = 70.9 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 50 IANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
E ++ + + ++ ++ A+++HM+ GIR+LI D + + +K
Sbjct: 4 SLASEEGFGEVKACLTSPLAKLIIWGLLSALLYHMVAGIRHLIMDTGVGETLEGGKLGSK 63
Query: 110 INIIASILTVLI--VWI 124
I I S++ +L+ VWI
Sbjct: 64 IVIAVSVVLILLAGVWI 80
>gi|237803489|ref|ZP_04591074.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|331025471|gb|EGI05527.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. oryzae str. 1_6]
Length = 81
Score = 70.9 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 50 IANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
E ++ YM + ++ ++ A+++HM+ GIR+LI D + + +K
Sbjct: 4 SLASEEGFGEVKAYMTSPLAKLVIWGLLSALLYHMVAGIRHLIMDSGVGETLEGGKLGSK 63
Query: 110 INIIASILTVLI--VWI 124
I I S++ +L+ VWI
Sbjct: 64 IVIAVSVVLILLAGVWI 80
>gi|330973471|gb|EGH73537.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. aceris str. M302273PT]
Length = 85
Score = 70.9 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 43 VVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+++ E ++ YM + ++ ++ A+++H++ GIR+LI D + +
Sbjct: 1 MLYAMDKSLASEEGFGEVKAYMTSPLVKLIIWGLLSALLYHLVAGIRHLIMDSGVGETLE 60
Query: 103 IATQMAKINIIASILTVLI--VWI 124
+KI I S++ +L+ VWI
Sbjct: 61 GGKLGSKIVIAVSVILILLAGVWI 84
>gi|118594808|ref|ZP_01552155.1| succinate dehydrogenase cytochrome b-556 subunit [Methylophilales
bacterium HTCC2181]
gi|118440586|gb|EAV47213.1| succinate dehydrogenase cytochrome b-556 subunit [Methylophilales
bacterium HTCC2181]
Length = 123
Score = 70.9 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 57/112 (50%)
Query: 11 SPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFE 70
+ +L RL VSI+HR++G+V+++ P +V F +
Sbjct: 8 NLNLFTIRLPMPALVSILHRMSGAVLFIFMPFLVVAFCNSLTSVSFYERTISQLFSFPLV 67
Query: 71 VCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ L+L W IHH++ G R+L+ D+ + D +A+ +K +++S++ L+V
Sbjct: 68 LILYLMVWGFIHHLIAGFRHLLLDMQIGNDLIVASLSSKSVLVSSVMGTLLV 119
>gi|255625753|gb|ACU13221.1| unknown [Glycine max]
Length = 249
Score = 70.9 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+++ RPLSPHL +Y+ + +SI +RI G+ + + + + T S
Sbjct: 156 TNLSGFRPLSPHLPLYQPQLSSTLSIFNRIAGAFLAGVILLFYMIYMKLGLVSLTYDSFY 215
Query: 62 CYM--DGSVFEVCLFLYTWAVIHHMLGGIRYLIW 93
++ + + + + AV +H+ IR+L
Sbjct: 216 QFIFYSSKLNLLVMEISALAVSYHLYSAIRHLFL 249
>gi|114775456|ref|ZP_01451024.1| hypothetical protein SPV1_03988 [Mariprofundus ferrooxydans PV-1]
gi|114553567|gb|EAU55948.1| hypothetical protein SPV1_03988 [Mariprofundus ferrooxydans PV-1]
Length = 104
Score = 70.5 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 50/103 (48%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M S+VHR +G V+ L P+ ++ + + ++ + ++ L+L A+
Sbjct: 1 MLASVVHRASGLVLVLFVPLYLWLLHGMTGSPEDFVQAQSWLHSELGKLSLWLAGIALFF 60
Query: 83 HMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
H G+R+L D C +++ A+I I +++ LI+ I+
Sbjct: 61 HFCNGLRFLSIDAGWCESRQMMRLSARIVIALTLVIALILGIL 103
>gi|323398684|ref|YP_004222759.1| succinate dehydrogenase subunit 3 [Glaucocystis nostochinearum]
gi|321401377|gb|ADW83131.1| succinate dehydrogenase subunit 3 [Glaucocystis nostochinearum]
Length = 142
Score = 70.5 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 12/128 (9%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ NRP+SPHL IY++ +SI +RI+ + L + + W+ I ++L
Sbjct: 1 MTFNRPISPHLSIYKIQINSLLSITNRIS--SLVLSSIIFSIWYNHILYNIFYTNNLYYL 58
Query: 64 MDGSVFEVCLF----------LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINII 113
+ ++F L+ +H+ GIR+L WD+ L ++
Sbjct: 59 LIKNIFITLLYNDIFIKSFIFFIFLNFYYHIFSGIRHLYWDIGQGLKINKIILNGLFVLL 118
Query: 114 ASILTVLI 121
L+
Sbjct: 119 IIFSWTLL 126
>gi|302187424|ref|ZP_07264097.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. syringae 642]
gi|330899180|gb|EGH30599.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. japonica str. M301072PT]
gi|330980727|gb|EGH78830.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. aptata str. DSM 50252]
Length = 85
Score = 70.5 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 43 VVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+++ E ++ YM + ++ ++ A+++H++ GIR+LI D + +
Sbjct: 1 MLYAMDKSLASEEGFGEVKAYMTSPLAKLIIWGLLSALLYHLVAGIRHLIMDSGVGETLE 60
Query: 103 IATQMAKINIIASILTVLI--VWI 124
+KI I S++ +L+ VWI
Sbjct: 61 GGKLGSKIVIAVSVILILLAGVWI 84
>gi|330867441|gb|EGH02150.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. aesculi str. 0893_23]
gi|330888150|gb|EGH20811.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. mori str. 301020]
gi|330987437|gb|EGH85540.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. lachrymans str. M301315]
Length = 81
Score = 70.1 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 50 IANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
E ++ + + ++ ++ A+++HM+ GIR+LI D + + +K
Sbjct: 4 SLASEEGFGEVKACLTSPLAKLIIWGLLSALLYHMVAGIRHLIMDSGVGETLEGGKLGSK 63
Query: 110 INIIASILTVLI--VWI 124
I I S++ +L+ VWI
Sbjct: 64 IVIAVSVVLILLAGVWI 80
>gi|313221237|emb|CBY43691.1| unnamed protein product [Oikopleura dioica]
Length = 183
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 7/126 (5%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV----VFWFFCIANGEHTL 57
++ K RP+SPHL +Y M +S ++RI + ++ +F +A+ +
Sbjct: 49 TNKKLGRPMSPHLTVYAWTIPMTMSALNRIFSFALVGAFMLLPIIDIFSSGSLASDIASF 108
Query: 58 SS-LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWD-VSLCL-DKKIATQMAKINIIA 114
+ R +G+ + + H+L G R+ WD ++ + + Q I
Sbjct: 109 GAEARANGNGAGIFALKMGLLFPLWFHILLGFRHWSWDIFAVGIRNIGTLYQTGYAAIAL 168
Query: 115 SILTVL 120
+I+ +
Sbjct: 169 AIVLTI 174
>gi|78486370|ref|YP_392295.1| succinate dehydrogenase, cytochrome b subunit [Thiomicrospira
crunogena XCL-2]
gi|78364656|gb|ABB42621.1| succinate dehydrogenase subunit C [Thiomicrospira crunogena XCL-2]
Length = 131
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
NRP+ +L + +SI+HRITG ++ L + + W + + R +
Sbjct: 7 NRPVYLNLFKFHFPLNAILSILHRITGVLLVLSFVLGLVWLHGMILQPESYVENRQILTH 66
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIW--DVSLCLD-KKIATQMAKINIIASILTVLIV 122
+ ++ L L ++ H L G+R+L ++ L + + ++ ++ ++ L +
Sbjct: 67 PIGQLVLTLGGLSLWFHWLSGLRHLAMEHNLGGLLSHLERSRLSGQVMLLIFVIGSLWL 125
>gi|166895626|ref|YP_001661420.1| succinate dehydrogenase cytochrome subunit 3 [Cycas taitungensis]
gi|166706958|dbj|BAF98422.1| succinate dehydrogenase cytochrome subunit 3 [Cycas taitungensis]
Length = 133
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+ NRPL PH I++ T I HRI G+ +L T V+ F G + + Y
Sbjct: 1 MNINRPLPPHPTIHKPQLTPTFPIPHRIPGA--FLATMVLFSPPFRPEIGLISSTYGNLY 58
Query: 64 MDGSVFEVCLFLYT------WAVIHHMLGGIRYLIWDVSL 97
F+ A +HM G+R+L WD+
Sbjct: 59 QSSFSVNFPKFILGLVNPTPLAPRYHMSNGVRHLRWDLGF 98
>gi|313231614|emb|CBY08727.1| unnamed protein product [Oikopleura dioica]
Length = 183
Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 7/126 (5%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV----VFWFFCIANGEHTL 57
++ K RP+SPHL +Y M +S ++RI + ++ +F +A+ +
Sbjct: 49 NNKKLGRPMSPHLTVYAWTIPMTMSALNRIFSFALVGAFMLLPIIDIFSSGSLASDIASF 108
Query: 58 SS-LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWD-VSLCL-DKKIATQMAKINIIA 114
+ R +G+ + + H+L G R+ WD ++ + + Q I
Sbjct: 109 GAEARSNGNGAGIFALKMGLLFPLWFHILLGFRHWSWDIFAVGIRNIGTLYQTGYAAIAL 168
Query: 115 SILTVL 120
+I+ +
Sbjct: 169 AIVLTI 174
>gi|289679938|ref|ZP_06500828.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. syringae FF5]
gi|330940369|gb|EGH43474.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. pisi str. 1704B]
gi|330944695|gb|EGH46631.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. pisi str. 1704B]
gi|330951679|gb|EGH51939.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae Cit 7]
Length = 81
Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 50 IANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
E ++ YM + ++ ++ A+++H++ GIR+LI D + + +K
Sbjct: 4 SLASEEGFGEVKAYMTSPLAKLIIWGLLSALLYHLVAGIRHLIMDSGVGETLEGGKLGSK 63
Query: 110 INIIASILTVLI--VWI 124
I I S++ +L+ VWI
Sbjct: 64 IVIAVSVILILLAGVWI 80
>gi|308805274|ref|XP_003079949.1| unnamed protein product [Ostreococcus tauri]
gi|116058406|emb|CAL53595.1| unnamed protein product [Ostreococcus tauri]
Length = 205
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 14/114 (12%)
Query: 7 NRPLSPHL--------QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLS 58
RPLSP + Y+ SI +R+TG V+ V + G +
Sbjct: 75 RRPLSPDVFDADGSWRAHYKFPVVALSSITNRVTGVVLSGA--VSSAGVIALVGGAEAVP 132
Query: 59 SLRCYMD--GSVFEV-CLFLYTWAVIHHMLGGIRYLIWD-VSLCLDKKIATQMA 108
++ + V F ++ + H LGG R+L+WD + +D A +
Sbjct: 133 AVIELVKAQSPVGVAPLKFALSFPFVFHTLGGFRHLVWDATTKGIDNASAKSTS 186
>gi|241618571|ref|XP_002408353.1| succinate dehydrogenase, putative [Ixodes scapularis]
gi|215502982|gb|EEC12476.1| succinate dehydrogenase, putative [Ixodes scapularis]
Length = 132
Score = 68.9 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 41 PVVVFWFFCIANGEHTLSSLRCYMDGSVFEV-CLFLYTWAVIHHMLGGIRYLIWDVSLCL 99
+ + F + + +++ V V F WA+ +H L G+R+L WD+ +
Sbjct: 47 GLGLAPFLTAHQFPYYVEAVKAMSISPVLLVPFKFALAWALCYHTLNGMRHLTWDLGIGF 106
Query: 100 DKKIATQMAKINIIASILTVLIV 122
K + S++ I+
Sbjct: 107 RLKELYASGYTVLAISLVLGAIL 129
>gi|197335668|ref|YP_002155581.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio fischeri
MJ11]
gi|197317158|gb|ACH66605.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio fischeri
MJ11]
Length = 97
Score = 68.5 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 45/95 (47%)
Query: 31 ITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRY 90
++G + ++ ++++ + + Y+DG ++ A+ +H++ GIR+
Sbjct: 1 MSGVITFVSVGILLWLLNLSLSSPIGFAQAADYVDGFFVTFIMWGILTALAYHIVVGIRH 60
Query: 91 LIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
L+ D+ + + TQ AK+ + + L+ ++
Sbjct: 61 LLMDMGYFEELESGTQSAKVAFAITAVLSLLAGVL 95
>gi|320324892|gb|EFW80964.1| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas
syringae pv. glycinea str. B076]
Length = 85
Score = 68.2 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 43 VVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+++ E ++ + + ++ ++ A+++HM+ G R+LI D + +
Sbjct: 1 MLYAMDKSLASEEGFGEVKACLTSPLAKLIIWGLLSALLYHMVAGSRHLIMDSGVGETLE 60
Query: 103 IATQMAKINIIASILTVLI--VWI 124
+KI I S++ +L+ VWI
Sbjct: 61 GGKLGSKIVIAVSVVLILLAGVWI 84
>gi|1345639|sp|P48935|C560_CYACA RecName: Full=Succinate dehydrogenase cytochrome b560 subunit;
AltName: Full=Succinate dehydrogenase, subunit III
gi|758171|emb|CAA88765.1| succinate dehydrogenase (cytochrome b560 subunit) [Cyanidium
caldarium]
Length = 132
Score = 68.2 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVF---WFFCIANGEHTLSSLRC 62
NRPLSP++ IY T SI HR++G + V+ + FC + ++
Sbjct: 4 KNRPLSPYVTIYSSQWTSISSIFHRLSGLYLVFFLFVLFCSIKFLFCFSTFWFVYKFVKT 63
Query: 63 YMDGSVFEVCLFLYT--WAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
+ +F+ +++ +H G+R+L+WD + ++ T K
Sbjct: 64 CFFFILSFFIVFIVFSMYSLFYHFFIGLRHLVWDEVILMEDNFVTMSTK 112
>gi|254429621|ref|ZP_05043328.1| succinate dehydrogenase, cytochrome b556 subunit [Alcanivorax sp.
DG881]
gi|196195790|gb|EDX90749.1| succinate dehydrogenase, cytochrome b556 subunit [Alcanivorax sp.
DG881]
Length = 91
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 38 LGTPVVVFWFFCIANGEHTLSSLRCYM-DGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
+ P++++ + + L+ M + ++ ++ +++H++ GIR+LI D
Sbjct: 1 MALPILLWMLDRSLASPESFADLKELMMTSLLVKLVVWGILSVLLYHLVAGIRHLIMDTG 60
Query: 97 LCLDKKIATQMAKINIIASILTVLIVWI 124
+ + + AK+ I S + +L+V +
Sbjct: 61 VGESLEGGRRGAKLAFIISAVLILLVGV 88
>gi|14861486|gb|AAK73693.1|AF362740_1 succinate dehydrogenase subunit 3 [Glycine max]
Length = 157
Score = 67.4 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM--D 65
RPLSPHL +Y+ + +SI +RI G+ + V + + T S ++
Sbjct: 70 RPLSPHLPLYQPQLSSTLSIFNRIAGAFLAGVILVFYMIYMKLGLVSLTYDSFYQFIFYS 129
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLIW 93
+ + + + AV +H+ IR+L
Sbjct: 130 SKLNLLVMEISALAVSYHLYSAIRHLFL 157
>gi|110225706|ref|YP_665711.1| succinate:cytochrome c oxidoreductase subunit 3 [Mesostigma
viride]
gi|17222577|gb|AAL36750.1|AF353999_30 succinate:cytochrome c oxidoreductase subunit 3 [Mesostigma
viride]
Length = 131
Score = 67.4 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT----PVVVFWFFCIANGEHTLSSLRCY 63
RPLSPH+ +Y+ S+ HRI+GSV+ + + + F S
Sbjct: 7 RPLSPHVSVYQPQWNSMFSLFHRISGSVLVISLFTFFLFSIIYSFHATRSYELFSFFLTL 66
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLI 92
D +F +A+ +H++ GI +++
Sbjct: 67 EDSKLFSFVELTILFALSYHIINGIHHIM 95
>gi|47194488|emb|CAF91055.1| unnamed protein product [Tetraodon nigroviridis]
Length = 129
Score = 67.0 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 2/76 (2%)
Query: 18 RLIPTMFVSIVHRITGSVVYLGTP-VVVFWFFCIANGEHTLSSLRCYMDGS-VFEVCLFL 75
R M +SI HR TG + V + L + G + +
Sbjct: 54 RWSVPMMMSITHRGTGVGLSGAISAFAVAALLLPGSYPDYLDMISSLSIGPVLIGMAKLG 113
Query: 76 YTWAVIHHMLGGIRYL 91
+ V +H GIR+L
Sbjct: 114 IAFPVSYHTYNGIRHL 129
>gi|33519787|ref|NP_878619.1| succinate dehydrogenase cytochrome b-556 subunit [Candidatus
Blochmannia floridanus]
gi|33504132|emb|CAD83394.1| succinate dehydrogenase cytochrome b-556 subunit [Candidatus
Blochmannia floridanus]
Length = 131
Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM--DG 66
P+ +++ + T SI+HRI+G ++++ +++ + + + ++ D
Sbjct: 8 PIYLNIKAIKFPITAIASILHRISGFILFIMIGPILWILKLSLSSIENFTKINTFLTVDN 67
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCL-DKKIATQMAKINIIASILTVLIVWI 124
F ++ +H++ G+R ++ D + A++ I I + V I
Sbjct: 68 YCFLFIRWIIIIIFSYHIVFGVRQILMDCGFIKQTLSMGKISARVVFILVICLSVYVGI 126
>gi|312970798|ref|ZP_07784977.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
1827-70]
gi|310336559|gb|EFQ01726.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
1827-70]
gi|315614595|gb|EFU95237.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
3431]
gi|320177264|gb|EFW52270.1| Succinate dehydrogenase cytochrome b-556 subunit [Shigella
dysenteriae CDC 74-1112]
gi|320182926|gb|EFW57795.1| Succinate dehydrogenase cytochrome b-556 subunit [Shigella flexneri
CDC 796-83]
gi|323163879|gb|EFZ49689.1| succinate dehydrogenase, cytochrome b556 subunit [Shigella sonnei
53G]
gi|323185120|gb|EFZ70486.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
1357]
gi|323191066|gb|EFZ76331.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
RN587/1]
gi|325498104|gb|EGC95963.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Escherichia fergusonii ECD227]
gi|330910470|gb|EGH38980.1| succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
AA86]
gi|332093781|gb|EGI98835.1| succinate dehydrogenase, cytochrome b556 subunit [Shigella boydii
5216-82]
gi|332097673|gb|EGJ02648.1| succinate dehydrogenase, cytochrome b556 subunit [Shigella boydii
3594-74]
gi|333007370|gb|EGK26850.1| succinate dehydrogenase, cytochrome b556 subunit [Shigella flexneri
VA-6]
gi|333010164|gb|EGK29599.1| succinate dehydrogenase, cytochrome b556 subunit [Shigella flexneri
K-272]
gi|333021119|gb|EGK40376.1| succinate dehydrogenase, cytochrome b556 subunit [Shigella flexneri
K-227]
Length = 95
Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 11/93 (11%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 34 SVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIW 93
+ ++ ++++ + M + ++ A+ +H++ GIR+++
Sbjct: 1 MITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMM 60
Query: 94 DVSLCLDK-KIATQMAKINIIASILTVLIVWII 125
D + + + AKI+ + +++ L+ ++
Sbjct: 61 DFGYLEETFEAGKRSAKISFVITVVLSLLAGVL 93
>gi|333008006|gb|EGK27482.1| succinate dehydrogenase, cytochrome b556 subunit [Shigella flexneri
K-218]
Length = 95
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 11/93 (11%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 34 SVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIW 93
+ ++ ++ + + M + ++ A+ +H++ GIR+++
Sbjct: 1 MITFVAVGILQWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMM 60
Query: 94 DVSLCLDK-KIATQMAKINIIASILTVLIVWII 125
D + + + AKI+ + +++ L+ ++
Sbjct: 61 DFGYLEETFEAGKRSAKISFVITVVLSLLAGVL 93
>gi|170769010|ref|ZP_02903463.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia
albertii TW07627]
gi|170122082|gb|EDS91013.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia
albertii TW07627]
Length = 95
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 11/93 (11%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 34 SVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIW 93
+ ++ ++++ + M + ++ A+ +H++ GIR+++
Sbjct: 1 MITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMM 60
Query: 94 DVSLCLDK-KIATQMAKINIIASILTVLIVWII 125
D + + + AKI+ + +++ L+ ++
Sbjct: 61 DFGHLEETFEAGKRSAKISFVITVVLSLLAGVL 93
>gi|320198160|gb|EFW72764.1| Succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
EC4100B]
Length = 95
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 10/93 (10%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 34 SVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIW 93
+ ++ ++++ + M + ++ A+ +H++ GIR+++
Sbjct: 1 MITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMM 60
Query: 94 DVSLCLDK-KIATQMAKINIIASILTVLIVWII 125
D + + + AKI+ + +++ + ++
Sbjct: 61 DFGYLEETFEAGKRSAKISFVITVVLSFLAGVL 93
>gi|224133566|ref|XP_002321606.1| predicted protein [Populus trichocarpa]
gi|222868602|gb|EEF05733.1| predicted protein [Populus trichocarpa]
Length = 91
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS 67
RPLSPHL IY SIV+RI+G+ YL V+ F C+ G + Y
Sbjct: 4 RPLSPHLPIYSPQVHSTFSIVNRISGA--YLSALVLFFCLICLKAGSICFTHYNFYQFLF 61
Query: 68 -----VFEVCLFLYTWAVIHHMLGGIRYLI 92
+ V A+ +H+ G+R+L+
Sbjct: 62 YSSKLILPVVDVTAALALTYHLFYGVRHLL 91
>gi|320194121|gb|EFW68753.1| Succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
WV_060327]
Length = 95
Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 14/95 (14%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 34 SVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIW 93
+ ++ ++++ + M + ++ A+ +H++ GIR+++
Sbjct: 1 MITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMM 60
Query: 94 DVSLCLD-----KKIATQMAKINIIASILTVLIVW 123
D + K+ A I ++ S+L ++VW
Sbjct: 61 DFGYLEETFEAGKRSAKISFVITVVFSLLAGVLVW 95
>gi|323158771|gb|EFZ44784.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
E128010]
gi|323180041|gb|EFZ65597.1| succinate dehydrogenase, cytochrome b556 subunit [Escherichia coli
1180]
Length = 95
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 11/93 (11%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 34 SVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIW 93
+ ++ ++++ + M + ++ A+ +H++ GIR+++
Sbjct: 1 MITFIAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMM 60
Query: 94 DVSLCLDK-KIATQMAKINIIASILTVLIVWII 125
D + + + AKI+ + +++ L+ ++
Sbjct: 61 DFGYLEETFEAGKRSAKISFVITVVLSLLAGVL 93
>gi|269960705|ref|ZP_06175077.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio harveyi
1DA3]
gi|269834782|gb|EEZ88869.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio harveyi
1DA3]
Length = 97
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 41/95 (43%)
Query: 31 ITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRY 90
++G + ++ ++++ + +D + L+ A+ +H+ GG+R+
Sbjct: 1 MSGVITFVAVGILLWLLSISLSSPMGFMEAADIVDSFFVKFILWGILTALAYHIAGGVRH 60
Query: 91 LIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
L+ D+ + AK+ A+ + L+ I+
Sbjct: 61 LLMDLGHFEELDSGAMSAKVAFGATAVLSLLAGIL 95
>gi|319760459|ref|YP_004124397.1| succinate dehydrogenase, cytochrome b556 subunit [Candidatus
Blochmannia vafer str. BVAF]
gi|318039173|gb|ADV33723.1| succinate dehydrogenase, cytochrome b556 subunit [Candidatus
Blochmannia vafer str. BVAF]
Length = 128
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Query: 12 PHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYM--DGSVF 69
++ + T SI+HRI+G +++ +++ + E + + + +F
Sbjct: 11 LDIKTIKFPITAIASILHRISGIFLFIMIGPILWVLRKSLHSEDNFYKISNLLLINNYLF 70
Query: 70 EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ T A+ +H++ GIR ++ D K + KI+ I + V+ ++I
Sbjct: 71 LFVKWSVTIALSYHIIFGIRQMLMDFGF---LKQTLLVGKISAIIVFILVISLFI 122
>gi|270268641|gb|ACZ65862.1| ENSANGP00000017418-like protein [Nasonia vitripennis]
gi|270268643|gb|ACZ65863.1| ENSANGP00000017418-like protein [Nasonia vitripennis]
gi|270268645|gb|ACZ65864.1| ENSANGP00000017418-like protein [Nasonia vitripennis]
gi|270268647|gb|ACZ65865.1| ENSANGP00000017418-like protein [Nasonia vitripennis]
gi|270268649|gb|ACZ65866.1| ENSANGP00000017418-like protein [Nasonia vitripennis]
Length = 101
Score = 65.5 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG 53
+++ RPLSPHL IY+L T +S+ HR TG V+ ++ + G
Sbjct: 50 KNMRLKRPLSPHLTIYQLQLTSMLSVTHRGTGIVLSSYAMILGLGTLFVPGG 101
>gi|320539323|ref|ZP_08038992.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Serratia symbiotica str. Tucson]
gi|320030448|gb|EFW12458.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Serratia symbiotica str. Tucson]
Length = 239
Score = 65.5 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY 63
+K RP++ LQ R T SI+HRI+G + ++ ++++ +
Sbjct: 1 MKKKRPVNMDLQTIRFPVTAIASILHRISGVITFIAVGILLWLLGLSLSSPEGFMQAAAI 60
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIW 93
M+ + + + A G+ +L W
Sbjct: 61 MNSFIVKFIFWGILTA------AGLSHLRW 84
>gi|145348128|ref|XP_001418508.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578737|gb|ABO96801.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 105
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 6/103 (5%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL-SSLRCYMDGSVFEVC--L 73
Y+ SI +R+TG + + G + ++ + + V
Sbjct: 1 YKFPAVALSSITNRVTGVALTGAMS--AGGIIALVGGAEAVPMTMEMFKANAPLAVVPVK 58
Query: 74 FLYTWAVIHHMLGGIRYLIWD-VSLCLDKKIATQMAKINIIAS 115
F ++ + H LGG R+L+WD + +D + A + S
Sbjct: 59 FALSFPFVFHTLGGFRHLVWDSTTKGIDNESANASSLAIFGVS 101
>gi|321226307|gb|EFX51358.1| Succinate dehydrogenase cytochrome b-556 subunit [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
Length = 95
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 34 SVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIW 93
+ ++ ++++ + MDG + + ++ A+ +H++ GIR+++
Sbjct: 1 MITFIAVGILLWLLGTSLSSPEGFQQAADIMDGFIVKFIMWGILTALAYHVIVGIRHMLM 60
Query: 94 DVSLCLDK-KIATQMAKINIIASILTVLIVWII 125
D + + + AKI+ + +++ L+ ++
Sbjct: 61 DFGYLEETFEAGQRSAKISFVITVVLSLLAGVL 93
>gi|270268651|gb|ACZ65867.1| ENSANGP00000017418-like protein [Nasonia longicornis]
gi|270268653|gb|ACZ65868.1| ENSANGP00000017418-like protein [Nasonia longicornis]
gi|270268655|gb|ACZ65869.1| ENSANGP00000017418-like protein [Nasonia longicornis]
gi|270268657|gb|ACZ65870.1| ENSANGP00000017418-like protein [Nasonia longicornis]
gi|270268659|gb|ACZ65871.1| ENSANGP00000017418-like protein [Nasonia longicornis]
gi|270268661|gb|ACZ65872.1| ENSANGP00000017418-like protein [Nasonia longicornis]
gi|270268663|gb|ACZ65873.1| ENSANGP00000017418-like protein [Nasonia longicornis]
gi|270268665|gb|ACZ65874.1| ENSANGP00000017418-like protein [Nasonia giraulti]
gi|270268667|gb|ACZ65875.1| ENSANGP00000017418-like protein [Nasonia giraulti]
gi|270268669|gb|ACZ65876.1| ENSANGP00000017418-like protein [Nasonia giraulti]
gi|270268671|gb|ACZ65877.1| ENSANGP00000017418-like protein [Nasonia giraulti]
gi|270268673|gb|ACZ65878.1| ENSANGP00000017418-like protein [Nasonia giraulti]
gi|270268675|gb|ACZ65879.1| ENSANGP00000017418-like protein [Nasonia giraulti]
Length = 101
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANG 53
+++ RPLSPHL IY+L T +S+ HR TG V+ ++ + G
Sbjct: 50 KNMRLKRPLSPHLTIYQLQLTSMLSVTHRGTGIVLSSYAMILGLGTLFVPGG 101
>gi|15004516|gb|AAK77129.1|AF362733_1 succinate dehydrogenase subunit 3 [Gymnocladus dioicus]
Length = 92
Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 16 IYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCY-MDGSVFEVCLF 74
IY+ T SI HRI+G+ +L T V+ F+ C+ G + Y + ++ L
Sbjct: 1 IYKPQLTSTFSIFHRISGA--FLATIVLFFYLLCLKIGLICFTYSNFYQFLFFLSKLILI 58
Query: 75 ---LYTWAVIHHMLGGIRYLIWDVSLCLDKKIAT 105
+ A+ +H+ G+R+L+ D+ L +I
Sbjct: 59 SVEITALALSYHLYNGVRHLLTDLGGFLFLRIGR 92
>gi|318604819|emb|CBY26317.1| succinate dehydrogenase cytochrome b-556 subunit [Yersinia
enterocolitica subsp. palearctica Y11]
Length = 94
Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 11/90 (12%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 37 YLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
++ ++++ + + M+ + + A+ +H+ GGIR+L+ D
Sbjct: 3 FVAVGILLWLLGLSVSSQEGFMQAAAVMNSFFVKFIFWGILTALAYHVCGGIRHLLMDFG 62
Query: 97 LCLD-KKIATQMAKINIIASILTVLIVWII 125
+ T+ A++ ++ +++ ++ ++
Sbjct: 63 YVEESLAAGTRSAQVVMVLTLVLSVLAGVL 92
>gi|8954360|ref|NP_059349.1| succinate dehydrogenase cytochrome B560 subunit [Cyanidioschyzon
merolae]
gi|4115782|dbj|BAA36520.1| succinate dehydrogenase cytochrome B560 subunit [Cyanidioschyzon
merolae strain 10D]
Length = 137
Score = 64.3 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 4/122 (3%)
Query: 8 RPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG- 66
RP++PHL IY SI HRI+G + + F T+ +
Sbjct: 7 RPIAPHLTIYNAQWNSVFSIFHRISGVFIMVFIFFSTLGLFFFKFYSPTIMCVSFLWLFN 66
Query: 67 ---SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
+F +F+ + +H+ GI +L+ ++ +M+K ++ SIL +
Sbjct: 67 KVYWIFISIIFIIFMSFFYHLCSGIYHLLLELGYFYHMVKIEKMSKYSLSFSILISFFYF 126
Query: 124 II 125
+
Sbjct: 127 FL 128
>gi|152969292|ref|YP_001334401.1| hypothetical protein KPN_00728 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150954141|gb|ABR76171.1| hypothetical protein KPN_00728 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 91
Score = 63.5 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 38 LGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSL 97
+ ++++ + + MD + ++ A+ +H++ GIR+L+ D
Sbjct: 1 MAVGILLWLLGTSLSSPEGFLTAASIMDSFFVKFIMWGILTALAYHVVVGIRHLMMDFGY 60
Query: 98 C-LDKKIATQMAKINIIASILTVLIVWII 125
+ + AKI+ + +++ L+ ++
Sbjct: 61 LDETLEAGKRSAKISFVITVVLSLLAGVL 89
>gi|254434682|ref|ZP_05048190.1| succinate dehydrogenase, cytochrome b556 subunit [Nitrosococcus
oceani AFC27]
gi|207091015|gb|EDZ68286.1| succinate dehydrogenase, cytochrome b556 subunit [Nitrosococcus
oceani AFC27]
Length = 102
Score = 63.5 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+HRI+G ++ PVVV+ + + + + + + WA++HH+ G
Sbjct: 1 MHRISGVILLFFIPVVVYLLDFSLRDKESFVWVTEFFSSLPVRLVGIVALWALLHHIFAG 60
Query: 88 IRYLIWDVSLCLDKK------IATQMAKINIIASILTVLIVW 123
IR+L++D+ + K A + + ++ ++L V ++W
Sbjct: 61 IRFLLFDIHMGKIVKDYRPSWSARITSILALVVTLLIVGVLW 102
>gi|301102751|ref|XP_002900462.1| transmembrane protein, putative [Phytophthora infestans T30-4]
gi|262101725|gb|EEY59777.1| transmembrane protein, putative [Phytophthora infestans T30-4]
Length = 166
Score = 62.8 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 2/115 (1%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
RP+SPH++IY+ T S+ +R + + F A+ + + +
Sbjct: 36 GRPISPHVEIYKFPVTAVSSVANRFSAMGMSAAFVGGSALGFVGADVPALIYMAQDSIP- 94
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCL-DKKIATQMAKINIIASILTVL 120
+ L + V +H+L G R+ +W L + + AS L L
Sbjct: 95 FFAPISKALVAFPVSYHVLCGARHSLWTYKPELINNADGPTSSYAIFAASALITL 149
>gi|300121288|emb|CBK21668.2| unnamed protein product [Blastocystis hominis]
Length = 154
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 15/126 (11%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
R +SPHL IY++ S HR+TG +++G C + + +++
Sbjct: 21 RGRMVSPHLSIYKVRWATMSSGCHRLTGLGLWMGFTAAGITACCGVSVPALIEAIK--FH 78
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRYLI---------WDVSLCLDKKIATQMAKINIIASI 116
V FL T+A+ +H + G+R++ WD + K + + + S+
Sbjct: 79 PLVLYSGKFLLTYALGYHYVCGLRHIFYEYYPDRLTWD-HI---TKSSLAIIWGMFVVSL 134
Query: 117 LTVLIV 122
L +
Sbjct: 135 LCTVAT 140
>gi|254498644|ref|ZP_05111362.1| succinate dehydrogenase cytochrome b556 truncated subunit C
[Legionella drancourtii LLAP12]
gi|254352092|gb|EET10909.1| succinate dehydrogenase cytochrome b556 truncated subunit C
[Legionella drancourtii LLAP12]
Length = 84
Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 40/79 (50%)
Query: 44 VFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKI 103
+F F E + + ++ + +++ L+ + A+I+H+L GIR++I D+
Sbjct: 1 MFIFGQSLQSEESFAQMKTLLTHPCYKLVLWAFGTALIYHVLAGIRHMIMDLGFGEHLSA 60
Query: 104 ATQMAKINIIASILTVLIV 122
+ A + I+ +++ + +
Sbjct: 61 GRRTAVLVIVLAVILTIFL 79
>gi|262167710|ref|ZP_06035413.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholerae
RC27]
gi|262023915|gb|EEY42613.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholerae
RC27]
Length = 97
Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 31 ITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRY 90
++G + ++ ++++ + +D + L+ A+ +H+ GGIR+
Sbjct: 1 MSGVITFVAVGILLWLLSLSLSSPVGFMEASNIVDSFFVKFVLWGILTALAYHIAGGIRH 60
Query: 91 LIWDVSLCLDKKIA----TQMAKINIIASILTVLIVW 123
L+ D+ + + ++ S+L ++VW
Sbjct: 61 LLMDLGHFEELESGAASAKVAFAATVVLSLLAGVLVW 97
>gi|2864622|emb|CAA16969.1| putative protein [Arabidopsis thaliana]
gi|7270125|emb|CAB79939.1| putative protein [Arabidopsis thaliana]
Length = 1086
Score = 61.6 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV----YLGTPVVVFWFFCIANGEHTL 57
IK+ RPLSPHL +Y+ +SI +RI+G + + G + +
Sbjct: 992 PKIKSFRPLSPHLSVYQPQMNSMLSIFNRISGVYLTGVTFAGYLLYLKMGMICLTYPSFY 1051
Query: 58 SSLRCYMDGSVFEVCLFLYTWAVIHHML 85
L Y V + A I+H +
Sbjct: 1052 QVL--YHTQQQLPVITSVTALAAIYHTI 1077
>gi|326936017|ref|XP_003214056.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like, partial [Meleagris gallopavo]
Length = 82
Score = 60.8 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 18 RLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIA-NGEHTLSSLRCYMDGS-VFEVCLFL 75
R M +SI HR TG + LG + + H ++ ++ G + F
Sbjct: 7 RWSLPMAMSITHRGTGVALSLGVSLFSLAALLLPEQFPHYVAVVKSLSLGPALIYSAKFA 66
Query: 76 YTWAVIHHMLGGIRYL 91
+ + +H GIR+L
Sbjct: 67 LVFPLSYHTWNGIRHL 82
>gi|78711820|ref|NP_001030588.1| succinate dehydrogenase cytochrome b560 subunit, mitochondrial
isoform 2 precursor [Homo sapiens]
gi|114560907|ref|XP_001174000.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial isoform 3 [Pan troglodytes]
gi|78096641|dbj|BAE46979.1| succinate dehydrogenase complex, subunit C delta5 alternative
splicing variant [Homo sapiens]
gi|194376880|dbj|BAG57586.1| unnamed protein product [Homo sapiens]
Length = 150
Score = 60.8 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYL 38
+I +NRPLSPH+ IY M +SI HR TG +
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSA 80
>gi|89095565|ref|ZP_01168462.1| succinate dehydrogenase (C subunit) [Oceanospirillum sp. MED92]
gi|89080169|gb|EAR59444.1| succinate dehydrogenase (C subunit) [Oceanospirillum sp. MED92]
Length = 51
Score = 60.8 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 4 IKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE 54
+ RP++ L+ + SI+HR+TG ++ G ++ E
Sbjct: 1 MNKKRPVNLDLRTIKQPLPAITSILHRVTGVALFFGAVFALYALGLSLESE 51
>gi|332285734|ref|YP_004417645.1| hypothetical protein PT7_2481 [Pusillimonas sp. T7-7]
gi|330429687|gb|AEC21021.1| hypothetical protein PT7_2481 [Pusillimonas sp. T7-7]
Length = 84
Score = 60.8 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQ--------MAKI 110
+ + L L+TW+++ H+ GI++L+ D+ + +
Sbjct: 1 MFARFCSSWFGILLLVLWTWSLLFHLCNGIQHLVRDMGRNFGPPTRDRTHKPVYWSTGWL 60
Query: 111 NIIASILTVLIVWIIKDI 128
I S+L ++VWII +
Sbjct: 61 VIAVSVLLTVLVWIILAV 78
>gi|90416069|ref|ZP_01224002.1| succinate dehydrogenase [marine gamma proteobacterium HTCC2207]
gi|90332443|gb|EAS47640.1| succinate dehydrogenase [marine gamma proteobacterium HTCC2207]
Length = 97
Score = 60.5 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 10/90 (11%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 34 SVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIW 93
+++ + ++ + E ++ + + ++ A+ +H + G+R+LI
Sbjct: 1 MILFFSVAIFLWLLEGSLSSEQGFEEVKALFANPLCQFIIWGSLAALAYHAVMGVRHLIM 60
Query: 94 DVSLCLDK-KIATQMAKINIIASILTVLIV 122
D+ D + A + ++ + + ++++
Sbjct: 61 DLGFGEDSFETGRATAWVAVVVAAVIIVLI 90
>gi|15004512|gb|AAK77127.1|AF362731_1 succinate dehydrogenase subunit 3 [Podophyllum peltatum]
Length = 95
Score = 60.5 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 16 IYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC----YMDGSVFEV 71
IY+ T SI HRI+G+ +L T V+ + + G + + + +
Sbjct: 1 IYKPELTSTFSIFHRISGA--FLATIVLFCYLLYLKMGFICFTYENFYQFLFYSSKLILI 58
Query: 72 CLFLYTWAVIHHMLGGIRYLIWDVSLCL 99
+ + A+ +H+ G+R+L+ D S L
Sbjct: 59 LVEITALALSYHLYNGVRHLLTDFSGFL 86
>gi|84393482|ref|ZP_00992238.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio splendidus
12B01]
gi|148978234|ref|ZP_01814752.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrionales bacterium SWAT-3]
gi|84375910|gb|EAP92801.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio splendidus
12B01]
gi|145962535|gb|EDK27812.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrionales bacterium SWAT-3]
Length = 70
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+DG + L+ A+ +H+ GGIR+L+ D+ + + + AK+ A+ + L+
Sbjct: 6 IVDGFFVKFILWGILTALAYHIAGGIRHLLMDLGHFEELESGAKSAKVAFAATAVLSLLA 65
Query: 123 WII 125
I+
Sbjct: 66 GIL 68
>gi|56756809|gb|AAW26576.1| SJCHGC03139 protein [Schistosoma japonicum]
Length = 132
Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGE-HTLSSL 60
+I RP SPHLQIY M S +HR TG + +G F G ++
Sbjct: 65 KNITGGRPWSPHLQIYSAPLVMRFSFLHRATGIAMAIGKSFNKLAFLHFYFGSVDYFATA 124
Query: 61 RCY 63
+
Sbjct: 125 YSF 127
>gi|32491172|ref|NP_871426.1| hypothetical protein WGLp423 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166379|dbj|BAC24569.1| sdhC [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 139
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL-RCYMDGS 67
P++ +L T SI+HRI+G V+L ++ + E + + +
Sbjct: 19 PINLNLFTINFTKTAISSILHRISGVSVFLSFGFFLWILDLSLSSEKEFNYIHQLIFTTI 78
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSL-CLDKKIATQMA 108
+ ++ L++ T +H++ G+R+++ D + D K A + A
Sbjct: 79 LIKIILWIITTVFFYHIIFGLRHILIDFNFSSEDLKTANKTA 120
>gi|297806993|ref|XP_002871380.1| succinate dehydrogenase 3-1 [Arabidopsis lyrata subsp. lyrata]
gi|297317217|gb|EFH47639.1| succinate dehydrogenase 3-1 [Arabidopsis lyrata subsp. lyrata]
Length = 213
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV----YLGTPVVVFWFFCIANGEHTL 57
K+ RPLSPHL +Y+ +SI +RI+G + + G + +
Sbjct: 119 PKTKSFRPLSPHLTVYQPQMNSMLSIFNRISGVYLTGVTFAGYLLYLKMGMICLTYPSFY 178
Query: 58 SSLRCYMDGSVFEVCLFLYTWAVIHHML 85
L Y V + A I+H +
Sbjct: 179 QVL--YHTQQQLPVITSVTALAAIYHTI 204
>gi|300175942|emb|CBK21938.2| Succinate dehydrogenase cytochrome b560 (SDHC) [Blastocystis
hominis]
Length = 152
Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 15/123 (12%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
R +SPHL IY++ S HR+TG +++G C + + +++ +
Sbjct: 21 RGRMVSPHLSIYKVRWATMSSGCHRLTGLGLWMGFTAAGITACCGVSVPALIEAIKFHPL 80
Query: 66 GSVFEVCLFLYTWAVIHHMLGGIRY---------LIWDVSLCLDKKIATQMAKINIIASI 116
F T+A+ +H + G+R+ L WD + + AS+
Sbjct: 81 ILYGG--KFFLTYALGYHYVCGLRHIYYEYYPDRLTWDHI----TSSSLLIIWGMFAASL 134
Query: 117 LTV 119
L
Sbjct: 135 LLT 137
>gi|325130094|gb|EGC52879.1| succinate dehydrogenase, cytochrome b556 subunit [Neisseria
meningitidis OX99.30304]
Length = 68
Score = 58.9 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 31/66 (46%)
Query: 60 LRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
R + + ++ L WA +HH L GIR+L D L+ A AK ++++
Sbjct: 1 YRAIVSHPLVKLVLIGVLWAYLHHSLAGIRFLFLDAHKGLELNTARNTAKAVFASALVLT 60
Query: 120 LIVWII 125
+++ +
Sbjct: 61 VVLGAL 66
>gi|145334347|ref|NP_001078555.1| SDH3-1; succinate dehydrogenase [Arabidopsis thaliana]
gi|332004032|gb|AED91415.1| succinate dehydrogenase 3-1 [Arabidopsis thaliana]
Length = 186
Score = 58.9 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV----YLGTPVVVFWFFCIANGEHTL 57
IK+ RPLSPHL +Y+ +SI +RI+G + + G + +
Sbjct: 92 PKIKSFRPLSPHLSVYQPQMNSMLSIFNRISGVYLTGVTFAGYLLYLKMGMICLTYPSFY 151
Query: 58 SSLRCYMDGSVFEVCLFLYTWAVIHHML 85
L Y V + A I+H +
Sbjct: 152 QVL--YHTQQQLPVITSVTALAAIYHTI 177
>gi|15242460|ref|NP_196522.1| SDH3-1; succinate dehydrogenase [Arabidopsis thaliana]
gi|186515438|ref|NP_194948.2| SDH3-2; succinate dehydrogenase [Arabidopsis thaliana]
gi|7671429|emb|CAB89370.1| putative protein [Arabidopsis thaliana]
gi|17979473|gb|AAL50073.1| AT5g09600/F17I14_210 [Arabidopsis thaliana]
gi|18650626|gb|AAL75912.1| AT5g09600/F17I14_210 [Arabidopsis thaliana]
gi|20142337|tpg|DAA00014.1| TPA_exp: succinate dehydrogenase subunit 3 [Arabidopsis thaliana]
gi|20142339|tpg|DAA00015.1| TPA_exp: succinate dehydrogenase subunit 3 [Arabidopsis thaliana]
gi|33589714|gb|AAQ22623.1| At5g09600/F17I14_210 [Arabidopsis thaliana]
gi|332004031|gb|AED91414.1| succinate dehydrogenase 3-1 [Arabidopsis thaliana]
gi|332004033|gb|AED91416.1| succinate dehydrogenase 3-1 [Arabidopsis thaliana]
gi|332660620|gb|AEE86020.1| succinate dehydrogenase 3-2 [Arabidopsis thaliana]
Length = 213
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV----YLGTPVVVFWFFCIANGEHTL 57
IK+ RPLSPHL +Y+ +SI +RI+G + + G + +
Sbjct: 119 PKIKSFRPLSPHLSVYQPQMNSMLSIFNRISGVYLTGVTFAGYLLYLKMGMICLTYPSFY 178
Query: 58 SSLRCYMDGSVFEVCLFLYTWAVIHHML 85
L Y V + A I+H +
Sbjct: 179 QVL--YHTQQQLPVITSVTALAAIYHTI 204
>gi|21593777|gb|AAM65744.1| unknown [Arabidopsis thaliana]
Length = 213
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV----YLGTPVVVFWFFCIANGEHTL 57
IK+ RPLSPHL +Y+ +SI +RI+G + + G + +
Sbjct: 119 PKIKSFRPLSPHLSVYQPQMNSMLSIFNRISGVYLTGVTFAGYLLYLKMGMICLTYPSFY 178
Query: 58 SSLRCYMDGSVFEVCLFLYTWAVIHHML 85
L Y V + A I+H +
Sbjct: 179 QVL--YHTQQQLPVITSVTALAAIYHTI 204
>gi|15004514|gb|AAK77128.1|AF362732_1 succinate dehydrogenase subunit 3 [Oxalis triangularis subsp.
papilionacea]
Length = 78
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 16 IYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFL 75
IY+ T SI HRI+G+ +L T V+ F+ C+ G + Y F+ + +
Sbjct: 1 IYKPQLTSTFSIFHRISGA--FLSTIVLFFYLLCLKIGLICFTYSNFYQFFFFFKKLILI 58
Query: 76 Y----TWAVIHHMLGGIRYL 91
A+ +H+ G+R+L
Sbjct: 59 SVEMTALALSYHLYNGVRHL 78
>gi|37525380|ref|NP_928724.1| succinate dehydrogenase cytochrome b-556 subunit [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|36784807|emb|CAE13719.1| succinate dehydrogenase cytochrome b-556 subunit [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 83
Score = 58.5 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 46 WFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIAT 105
+ + M G + ++ A+ +H+ GG+R+++ D +
Sbjct: 1 MLEMSLSSQEGFQQAADIMTGFFAKFIVWGILTALAYHICGGVRHMLMDFGYLEENLAVG 60
Query: 106 QMAK-----INIIASILTVLIVW 123
++ I +I SIL ++VW
Sbjct: 61 SLSAKVAIGIAVILSILAGVLVW 83
>gi|119621184|gb|EAX00779.1| UBX domain containing 4, isoform CRA_c [Homo sapiens]
Length = 317
Score = 58.1 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
+ ++ + F + +++H GI++L+WD+ L Q
Sbjct: 256 CLGPALMDTTKFALVFPLMYHTWNGIQHLMWDLGKGLKIPQLYQSG 301
>gi|262394887|ref|YP_003286741.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio sp. Ex25]
gi|269966048|ref|ZP_06180139.1| Succinate dehydrogenase cytochrome b556 subunit [Vibrio
alginolyticus 40B]
gi|262338481|gb|ACY52276.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio sp. Ex25]
gi|269829355|gb|EEZ83598.1| Succinate dehydrogenase cytochrome b556 subunit [Vibrio
alginolyticus 40B]
Length = 70
Score = 58.1 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+D + L+ A+ +H+ GGIR+L+ D+ + T AK+ A+ + L+
Sbjct: 6 IVDSFFVKFILWGILTALAYHIAGGIRHLLMDLGHFEELDSGTMSAKVAFGATAVLSLLA 65
Query: 123 WII 125
I+
Sbjct: 66 GIL 68
>gi|258621142|ref|ZP_05716176.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio mimicus
VM573]
gi|261210020|ref|ZP_05924319.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio sp. RC341]
gi|262166200|ref|ZP_06033937.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio mimicus
VM223]
gi|262170919|ref|ZP_06038597.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio mimicus
MB-451]
gi|262404441|ref|ZP_06080996.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio sp. RC586]
gi|258586530|gb|EEW11245.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio mimicus
VM573]
gi|260840966|gb|EEX67503.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio sp. RC341]
gi|261891995|gb|EEY37981.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio mimicus
MB-451]
gi|262025916|gb|EEY44584.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio mimicus
VM223]
gi|262349473|gb|EEY98611.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio sp. RC586]
Length = 70
Score = 57.8 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 32/63 (50%)
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+D + + L+ A+ +H+ GGIR+L+ D+ + + AK+ A+ + L+
Sbjct: 6 IVDSFLVKFVLWGILTALAYHIAGGIRHLLMDLGHFEELESGATSAKVAFAATAVLSLLA 65
Query: 123 WII 125
++
Sbjct: 66 GVL 68
>gi|320157045|ref|YP_004189424.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio vulnificus
MO6-24/O]
gi|319932357|gb|ADV87221.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio vulnificus
MO6-24/O]
Length = 70
Score = 57.8 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+D + L+ A+ +H+ GGIR+L+ D+ + + AK+ A+ + L+
Sbjct: 6 IVDSFFVKFILWGILTALAYHIAGGIRHLMMDLGHFEELESGAMSAKVAFAATAVLSLLA 65
Query: 123 WII 125
I+
Sbjct: 66 GIL 68
>gi|11022654|dbj|BAB17027.1| unnamed protein product [Arabidopsis thaliana]
Length = 240
Score = 57.4 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV----YLGTPVVVFWFFCIANGEHTL 57
IK+ RPLSPHL +Y+ +SI +RI+G + + G + +
Sbjct: 146 PKIKSFRPLSPHLSVYQPQMNSMLSIFNRISGVYLTGVTFAGYLLYLKMGMICLTYPSFY 205
Query: 58 SSLRCYMDGSVFEVCLFLYTWAVIHHML 85
L Y V + A I+H +
Sbjct: 206 QVL--YHTQQQLPVITSVTALAAIYHTI 231
>gi|153846511|ref|ZP_01993862.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio
parahaemolyticus AQ3810]
gi|308125984|ref|ZP_05778467.2| succinate dehydrogenase, cytochrome b556 subunit [Vibrio
parahaemolyticus K5030]
gi|149744897|gb|EDM56271.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio
parahaemolyticus AQ3810]
gi|308111276|gb|EFO48816.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio
parahaemolyticus K5030]
Length = 70
Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+DG + L+ A+ +H+ GGIR+L+ D+ + AK+ A+ + L+
Sbjct: 6 IVDGFFVKFILWGILTALAYHIAGGIRHLLMDLGHFEELDSGAMSAKVAFGATAVLSLLA 65
Query: 123 WII 125
I+
Sbjct: 66 GIL 68
>gi|9653243|ref|NP_062489.1| succinate:cytochrome c oxidoreductase subunit 3 [Chondrus crispus]
gi|1345638|sp|P48934|C560_CHOCR RecName: Full=Succinate dehydrogenase cytochrome b560 subunit;
AltName: Full=Succinate dehydrogenase, subunit III
gi|1334490|emb|CAA87612.1| succinate dehydrogenase, subunit III [Chondrus crispus]
Length = 127
Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHT---LSSLRC 62
+NRP++PHL +Y + SI HRI+G + + + I + L+ +
Sbjct: 8 SNRPIAPHLLVYTPQLSSLFSIWHRISGVGLAFFFTTFLIFIRIILSSNFACNLLTLISF 67
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKK 102
+ + + +H+ G R++IWD LD K
Sbjct: 68 EISQWIIIYFNLFILLFLFYHLFNGTRHIIWDFGFLLDIK 107
>gi|260767667|ref|ZP_05876602.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio furnissii
CIP 102972]
gi|260617176|gb|EEX42360.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio furnissii
CIP 102972]
gi|315179501|gb|ADT86415.1| succinate dehydrogenase, cytochrome b556 subunit [Vibrio furnissii
NCTC 11218]
Length = 70
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 30/62 (48%)
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
++G + L+ A+ +H++GGIR+L+ D+ + AK+ + + L+
Sbjct: 6 IVNGFFVKFILWGILTALSYHIVGGIRHLLMDLGHFEELDTGAMSAKVAFGVTAVLSLLA 65
Query: 123 WI 124
+
Sbjct: 66 GV 67
>gi|321268751|gb|ADW79200.1| succinate dehydrogenase subunit 3 [Cyanophora paradoxa]
Length = 144
Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 10 LSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFW------FFCIANGEHTLSSLRCY 63
+SPHL IY L +SI++RI G ++ L + F I + + L L
Sbjct: 8 ISPHLNIYNLELQSGLSILNRICGLILTLFIFYFIIMDTLLYETFIITHFSYILYYLFDL 67
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKI 103
+ + ++ H GIR++IWD+++ L KK
Sbjct: 68 IQEEYEFTIGVTMSLIILIHFFCGIRHIIWDLNIGLTKKA 107
>gi|310767018|gb|ADP11968.1| Succinate dehydrogenase cytochrome b-556 subunit [Erwinia sp.
Ejp617]
Length = 91
Score = 56.2 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/89 (13%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 38 LGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS- 96
+ ++++ + MD + + ++ A+ +H+ GGIR+++ D
Sbjct: 1 MSIGILLWLLGLSLSSPEGFLQASAVMDSFIVKFIMWGILTALAYHIAGGIRHMMMDFGL 60
Query: 97 LCLDKKIATQMAKINIIASILTVLIVWII 125
L + A+I +++ ++ ++
Sbjct: 61 LGETLETGKISAQIAFGITVVLSILAGVL 89
>gi|330804877|ref|XP_003290416.1| hypothetical protein DICPUDRAFT_92482 [Dictyostelium purpureum]
gi|325079467|gb|EGC33066.1| hypothetical protein DICPUDRAFT_92482 [Dictyostelium purpureum]
Length = 116
Score = 56.2 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVV 44
P SPHL IYRL +SI+HR TG + LG V
Sbjct: 67 PTSPHLTIYRLPLPANISIMHRATGVSLGLGLFGVC 102
>gi|197107551|gb|ACH42355.1| succinate dehydrogenase subunit 3 [Nymphaea tetragona]
Length = 79
Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC----YM 64
PLSPHL IY+ T I HRI+G+ +L T V+ + C+ G + +
Sbjct: 1 PLSPHLPIYKPQLTSTFPISHRISGA--FLVTIVLFSYLLCLKIGLICFTYENFYQFLFY 58
Query: 65 DGSVFEVCLFLYTWAVIHHML 85
+ + L + A+ +H+L
Sbjct: 59 SSKLIPISLEITALALSYHLL 79
>gi|295698447|ref|YP_003603102.1| succinate dehydrogenase, Cytochrome b556 subunit [Candidatus Riesia
pediculicola USDA]
gi|291157372|gb|ADD79817.1| succinate dehydrogenase, Cytochrome b556 subunit [Candidatus Riesia
pediculicola USDA]
Length = 136
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+++ + + ++ L I +L SI+HRI+G + ++ + + S +
Sbjct: 10 LANKRKKKLINLELDIRKLPINAIASILHRISGVMNIFSLGWMIRRIYSNIKFQEKFSPI 69
Query: 61 RCY-MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS-LCLDKKIATQMAK 109
+ + ++++ I+H+L GIR+++ D++ + A
Sbjct: 70 IFFNSQSYFYRFLVYIFFIMFIYHILSGIRFILIDLNIIGYKLIAIKISAI 120
>gi|109066507|ref|XP_001090560.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like [Macaca mulatta]
Length = 151
Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGT 40
+NRP+SPH+ IY M +SI H TG + G
Sbjct: 49 SNRPVSPHITIYSWSLPMAMSICHSGTGIALSAGV 83
>gi|301767438|ref|XP_002919138.1| PREDICTED: LOW QUALITY PROTEIN: succinate dehydrogenase cytochrome
b560 subunit, mitochondrial-like [Ailuropoda
melanoleuca]
Length = 167
Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 1/113 (0%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+ +N PLSPH+ IY M H T V + + + E L ++
Sbjct: 44 ENTGSNGPLSPHIXIYSWSLPMVTPTCHNGTRVVSFSRVSLWLVSLVVPRKYESHLELMK 103
Query: 62 CYMDG-SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINII 113
G ++ + +++H I L+ D L Q + +I
Sbjct: 104 SLCLGXALIHTAKSAPIFPLMYHTCNEIGPLMRDSEEDLKITQLYQSGTVVLI 156
>gi|289824381|ref|ZP_06543974.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhi str.
E98-3139]
Length = 134
Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 10/59 (16%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 68 VFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASILTVLIVWII 125
+ ++ A+ +H++ GIR+++ D + + + AKI+ + +++ L+ ++
Sbjct: 74 YVKFIMWGILTALAYHVIVGIRHMLMDFGYLEETFEAGQRSAKISFVITVVLSLLAGVL 132
>gi|256371006|ref|YP_003108830.1| succinate dehydrogenase, cytochrome b556 subunit [Acidimicrobium
ferrooxidans DSM 10331]
gi|256007590|gb|ACU53157.1| succinate dehydrogenase, cytochrome b556 subunit [Acidimicrobium
ferrooxidans DSM 10331]
Length = 138
Score = 53.9 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
Query: 27 IVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLG 86
I+HR+TG + ++ N H + + +A+++H L
Sbjct: 32 ILHRVTG-FLVFMFILLHIVDVATLNDPHVYEQIHQLYGNIFLRLFEVGLLFALLYHALN 90
Query: 87 GIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
G+R ++ D + + + + S+L ++
Sbjct: 91 GLRVIMIDFFPG-AVRNERALFQAMLGLSVLLTIV 124
>gi|332160914|ref|YP_004297491.1| Succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Yersinia enterocolitica subsp. palearctica 105.5R(r)]
gi|325665144|gb|ADZ41788.1| Succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Yersinia enterocolitica subsp. palearctica 105.5R(r)]
Length = 71
Score = 53.1 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASIL 117
M+ + + A+ +H+ GGIR+L+ D + T+ A++ ++ +++
Sbjct: 2 QAAAVMNSFFVKFIFWGILTALAYHVCGGIRHLLMDFGYVEESLAAGTRSAQVVMVLTLV 61
Query: 118 TVLIVWII 125
++ ++
Sbjct: 62 LSVLAGVL 69
>gi|114631799|ref|XP_001145964.1| PREDICTED: similar to succinate dehydrogenase complex, subunit C
delta5 alternative splicing variant isoform 2 [Pan
troglodytes]
Length = 150
Score = 53.1 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV 36
+ NRP+SPH+ IY M ++I HR TG+ +
Sbjct: 44 KNTGLNRPVSPHVTIYSWSLPMAMAICHRDTGTAL 78
>gi|255745166|ref|ZP_05419115.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholera
CIRS 101]
gi|262155976|ref|ZP_06029097.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholerae
INDRE 91/1]
gi|255736996|gb|EET92392.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholera
CIRS 101]
gi|262030287|gb|EEY48930.1| succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholerae
INDRE 91/1]
gi|327484623|gb|AEA79030.1| Succinate dehydrogenase cytochrome b-556 subunit [Vibrio cholerae
LMA3894-4]
Length = 70
Score = 52.7 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIA----TQMAKINIIASILT 118
+D + L+ A+ +H+ GGIR+L+ D+ + + ++ S+L
Sbjct: 6 IVDSFFVKFVLWGILTALAYHIAGGIRHLLMDLGHFEELESGAASAKVAFAATVVLSLLA 65
Query: 119 VLIVW 123
++VW
Sbjct: 66 GVLVW 70
>gi|83815294|ref|YP_444632.1| putative succinate dehydrogenase membrane subunit [Salinibacter
ruber DSM 13855]
gi|83756688|gb|ABC44801.1| putative succinate dehydrogenase membrane subunit [Salinibacter
ruber DSM 13855]
Length = 164
Score = 52.7 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
Q YR+ MF ++HR+TG + + V ++ + T ++L +F+V F
Sbjct: 37 QSYRIRTGMFAWMMHRLTGVGLVVYLIVHIWGLTAL-TDPETFNALIAKYHSPIFKVGEF 95
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
AV +H + G+R ++ D L K + + +++ + W
Sbjct: 96 ALLVAVAYHAMNGLRLVLIDF-LGWSPKQKKLFWTLGAVTAVIIAVGGW 143
>gi|238785854|ref|ZP_04629822.1| Succinate dehydrogenase cytochrome b556 subunit [Yersinia
bercovieri ATCC 43970]
gi|238713224|gb|EEQ05268.1| Succinate dehydrogenase cytochrome b556 subunit [Yersinia
bercovieri ATCC 43970]
Length = 71
Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASIL 117
M+ + + + A+ +H+ GGIR+L+ D + T+ A++ ++ +++
Sbjct: 2 QAAAIMNSFIVKFIFWGILTALAYHVCGGIRHLLMDFGYIEESLAAGTRSAQVTMVLTLV 61
Query: 118 TVLIVWII 125
++ ++
Sbjct: 62 LSVLAGVL 69
>gi|238790483|ref|ZP_04634252.1| Succinate dehydrogenase cytochrome b556 subunit [Yersinia
frederiksenii ATCC 33641]
gi|238721427|gb|EEQ13098.1| Succinate dehydrogenase cytochrome b556 subunit [Yersinia
frederiksenii ATCC 33641]
Length = 71
Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASIL 117
M+ + + A+ +H+ GGIR+L+ D + T+ A++ ++ +++
Sbjct: 2 QAAAIMNSFFVKFIFWGILTALAYHICGGIRHLLMDFGYIEESLAAGTRSAQVAMVLTLV 61
Query: 118 TVLIVWII 125
++ ++
Sbjct: 62 LSVLAGVL 69
>gi|108798201|ref|YP_638398.1| succinate dehydrogenase, cytochrome b subunit [Mycobacterium sp.
MCS]
gi|119867297|ref|YP_937249.1| succinate dehydrogenase, cytochrome b subunit [Mycobacterium sp.
KMS]
gi|126433858|ref|YP_001069549.1| succinate dehydrogenase, cytochrome b subunit [Mycobacterium sp.
JLS]
gi|108768620|gb|ABG07342.1| succinate dehydrogenase subunit C [Mycobacterium sp. MCS]
gi|119693386|gb|ABL90459.1| succinate dehydrogenase subunit C [Mycobacterium sp. KMS]
gi|126233658|gb|ABN97058.1| succinate dehydrogenase subunit C [Mycobacterium sp. JLS]
Length = 142
Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR P M+ ++HRI+G+ ++ V V + +++ + +
Sbjct: 23 TLYRGDPGMWSWVLHRISGAAIFFFLFVHVVDTALVRVSPEAYNAVIETYKTPIIGLMEI 82
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDI 128
AV++H L GIR ++ D K Q + ++A + +++ + I
Sbjct: 83 GLVGAVLYHALNGIRVILID---FWSKGARYQRQMLWVVAGVFITVMIASLGVI 133
>gi|294506383|ref|YP_003570441.1| Succinate dehydrogenase hydrophobic membrane anchor subunit
[Salinibacter ruber M8]
gi|294342711|emb|CBH23489.1| Succinate dehydrogenase hydrophobic membrane anchor subunit
[Salinibacter ruber M8]
Length = 153
Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
Q YR+ MF ++HR+TG + + V ++ + T ++L +F+V F
Sbjct: 26 QSYRIRTGMFAWMMHRLTGVGLVVYLIVHIWGLTAL-TDPETFNALIAKYHSPIFKVGEF 84
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
AV +H + G+R ++ D L K + + +++ + W
Sbjct: 85 ALLVAVAYHAMNGLRLVLIDF-LGWSPKQKKLFWTLGAVTAVIIAVGGW 132
>gi|118471568|ref|YP_886048.1| succinate dehydrogenase, cytochrome b556 subunit [Mycobacterium
smegmatis str. MC2 155]
gi|118172855|gb|ABK73751.1| succinate dehydrogenase, cytochrome b556 subunit [Mycobacterium
smegmatis str. MC2 155]
Length = 138
Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR P M+ ++HRITG+ ++ V V + + + + +
Sbjct: 19 TLYRGDPGMWSWVLHRITGATIFFFLFVHVLDTALVRVSPQAYNEVIETYKTPIVGLMEI 78
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDI 128
AV+ H L GIR ++ D K Q + +IA + V+ + + I
Sbjct: 79 GLVAAVLFHALNGIRVILID---FWAKGPRYQRQMLAVIAGLFLVIFIAAVGVI 129
>gi|120402595|ref|YP_952424.1| succinate dehydrogenase, cytochrome b subunit [Mycobacterium
vanbaalenii PYR-1]
gi|119955413|gb|ABM12418.1| succinate dehydrogenase subunit C [Mycobacterium vanbaalenii PYR-1]
Length = 142
Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
IYR P M+ ++HRI+G+ ++ V V + + + + +
Sbjct: 23 TIYRGDPGMWSWVLHRISGATIFFFLFVHVLDTALVRVSPQAYNEVIETYKTPIVGLMEI 82
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDI 128
AV++H L GIR ++ D + +M +IA + + + + I
Sbjct: 83 GLVAAVLYHALNGIRIILIDF-WSEGPRHQRKMLW--VIAGVFIAVFIAALGVI 133
>gi|238797745|ref|ZP_04641239.1| Succinate dehydrogenase cytochrome b556 subunit [Yersinia
mollaretii ATCC 43969]
gi|238718386|gb|EEQ10208.1| Succinate dehydrogenase cytochrome b556 subunit [Yersinia
mollaretii ATCC 43969]
Length = 71
Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASIL 117
M+ + + + A+ +H+ GGIR+L+ D + T+ A++ ++ +++
Sbjct: 2 QAAAIMNSFIVKFIFWGILTALAYHVCGGIRHLLMDFGYIEESLAAGTRSAQVAMVLTLV 61
Query: 118 TVLIVWII 125
++ ++
Sbjct: 62 LSVLAGVL 69
>gi|313680396|ref|YP_004058135.1| succinate dehydrogenase subunit c [Oceanithermus profundus DSM
14977]
gi|313153111|gb|ADR36962.1| succinate dehydrogenase subunit C [Oceanithermus profundus DSM
14977]
Length = 120
Score = 51.2 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+HRITG + L V V G +++ + +F++ L AV++H L G
Sbjct: 13 LHRITGVAILLYLLVHVGELTAAMFGAKYSNAILEFFHQPLFQLGLLGVIGAVLYHALNG 72
Query: 88 IRYLIWDV 95
+R LI D
Sbjct: 73 LRILIMDF 80
>gi|326490269|dbj|BAJ84798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 129
Score = 51.2 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWF 47
NRPLSPHL + + + SI HRI G + G ++
Sbjct: 81 NRPLSPHLPLKKPQLSATFSISHRIFGVAL--GAAIISIPL 119
>gi|254509008|ref|ZP_05121113.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio parahaemolyticus 16]
gi|219548043|gb|EED25063.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Vibrio parahaemolyticus 16]
Length = 59
Score = 51.2 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 70 EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ L+ A+ +H+ GGIR+L+ D+ + + AK+ A+ + L+ I+
Sbjct: 2 KFILWGILTALAYHIAGGIRHLLMDLGHFEELESGAMSAKVAFAATAVLSLLAGIM 57
>gi|218199733|gb|EEC82160.1| hypothetical protein OsI_26228 [Oryza sativa Indica Group]
Length = 129
Score = 51.2 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWF 47
NRPLSPHL + + + SI HRI G+ + G ++
Sbjct: 81 NRPLSPHLPLKKPQLSATFSISHRIFGAAL--GAVIISIPL 119
>gi|311113028|ref|YP_003984250.1| succinate dehydrogenase cytochrome b558 subunit [Rothia
dentocariosa ATCC 17931]
gi|310944522|gb|ADP40816.1| succinate dehydrogenase cytochrome b558 subunit [Rothia
dentocariosa ATCC 17931]
Length = 182
Score = 50.8 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 32/81 (39%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG ++ V V + +S+ V +
Sbjct: 38 TLYRGRWGMWSWVAHRVTGIAIFFFLLVHVLDTAVVRISPEAYNSVLGLYKNPVMGLGET 97
Query: 75 LYTWAVIHHMLGGIRYLIWDV 95
A+++H GIR ++ D
Sbjct: 98 ALVAAIVYHAFNGIRIILIDF 118
>gi|115472415|ref|NP_001059806.1| Os07g0521000 [Oryza sativa Japonica Group]
gi|14861490|gb|AAK73695.1|AF362742_1 succinate dehydrogenase subunit 3 [Oryza sativa]
gi|34393293|dbj|BAC83222.1| succinate dehydrogenase subunit 3 [Oryza sativa Japonica Group]
gi|113611342|dbj|BAF21720.1| Os07g0521000 [Oryza sativa Japonica Group]
gi|125600467|gb|EAZ40043.1| hypothetical protein OsJ_24481 [Oryza sativa Japonica Group]
gi|215765011|dbj|BAG86708.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 129
Score = 50.4 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWF 47
NRPLSPHL + + + SI HRI G+ + G ++
Sbjct: 81 NRPLSPHLPLKKPQLSATFSISHRIFGAAL--GAVIISIPL 119
>gi|242075036|ref|XP_002447454.1| hypothetical protein SORBIDRAFT_06g001280 [Sorghum bicolor]
gi|241938637|gb|EES11782.1| hypothetical protein SORBIDRAFT_06g001280 [Sorghum bicolor]
Length = 117
Score = 50.4 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV 43
NRPLSPHL + + + SI HRI G + + V
Sbjct: 69 NRPLSPHLPLKKPQFSATFSISHRIFGVALGVAIISV 105
>gi|226495047|ref|NP_001149724.1| succinate dehydrogenase subunit 3 [Zea mays]
gi|195605954|gb|ACG24807.1| succinate dehydrogenase subunit 3 [Zea mays]
gi|195629790|gb|ACG36536.1| succinate dehydrogenase subunit 3 [Zea mays]
Length = 117
Score = 50.4 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV 43
+SS NRPLSPHL + + + SI HRI G + + V
Sbjct: 63 LSSAVANRPLSPHLPLKKPQFSATFSISHRIFGVALGVAIISV 105
>gi|184201436|ref|YP_001855643.1| succinate dehydrogenase cytochrome b subunit [Kocuria rhizophila
DC2201]
gi|183581666|dbj|BAG30137.1| succinate dehydrogenase cytochrome b subunit [Kocuria rhizophila
DC2201]
Length = 125
Score = 50.4 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 9/114 (7%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HRITG ++ V V + +++ V +
Sbjct: 8 TLYRGQYGMWSWVAHRITGVAIFFFLLVHVLDTALVRVSPEAYNAVIATYKNPVMGLGET 67
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDI 128
A+++H G+R ++ D K + VL +W++ I
Sbjct: 68 GLVAAIVYHAFNGLRIILIDFWKGGTKHQK---------GLLWGVLALWVVVMI 112
>gi|326519544|dbj|BAK00145.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 118
Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV 43
NRPLSPHL + + + SI HRI G + +
Sbjct: 70 NRPLSPHLPLKKPQLSATFSISHRIFGVALGAAIISI 106
>gi|32400816|gb|AAP80640.1|AF475119_1 succinate dehydrogenase subunit 3 [Triticum aestivum]
Length = 132
Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWF 47
+S+ NRPLSPHL + + + SI HRI G+ + G ++
Sbjct: 78 LSTPVANRPLSPHLPLKKPQLSATFSISHRIFGAAL--GAAIISIPL 122
>gi|169630752|ref|YP_001704401.1| succinate dehydrogenase (cytochrome b-556 subunit) SdhC
[Mycobacterium abscessus ATCC 19977]
gi|169242719|emb|CAM63747.1| Probable succinate dehydrogenase (cytochrome b-556 subunit) SdhC
[Mycobacterium abscessus]
Length = 140
Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR P M+ ++HRITG+ ++ V V + + +S+ + +
Sbjct: 21 SLYRGDPGMWSWVLHRITGATIFFFLFVHVLDTALVRVSPESYNSVIETYKTPIVGLMEL 80
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
AV++H L G+R ++ D K Q + II ++ V++V
Sbjct: 81 GLVAAVLYHALNGVRVILVD---FWSKGPRYQRLMLWIIGAVWFVVMV 125
>gi|115443883|ref|NP_001045721.1| Os02g0121800 [Oryza sativa Japonica Group]
gi|14861488|gb|AAK73694.1| succinate dehydrogenase subunit 3 [Oryza sativa]
gi|41052751|dbj|BAD07607.1| succinate dehydrogenase subunit 3 [Oryza sativa Japonica Group]
gi|113535252|dbj|BAF07635.1| Os02g0121800 [Oryza sativa Japonica Group]
gi|215737053|dbj|BAG95982.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222622073|gb|EEE56205.1| hypothetical protein OsJ_05172 [Oryza sativa Japonica Group]
Length = 129
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWF 47
NRPLSPHL + + + SI HRI G+ + G ++
Sbjct: 81 NRPLSPHLPLKKPQLSATFSISHRIFGAAL--GAAIISIPL 119
>gi|226532415|ref|NP_001147745.1| LOC100281355 [Zea mays]
gi|195605110|gb|ACG24385.1| succinate dehydrogenase subunit 3 [Zea mays]
gi|195605432|gb|ACG24546.1| succinate dehydrogenase subunit 3 [Zea mays]
gi|195613432|gb|ACG28546.1| succinate dehydrogenase subunit 3 [Zea mays]
gi|195618284|gb|ACG30972.1| succinate dehydrogenase subunit 3 [Zea mays]
gi|195619232|gb|ACG31446.1| succinate dehydrogenase subunit 3 [Zea mays]
gi|195641204|gb|ACG40070.1| succinate dehydrogenase subunit 3 [Zea mays]
gi|224032159|gb|ACN35155.1| unknown [Zea mays]
Length = 118
Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV 43
NRPLSPHL + + + SI HRI G + + V
Sbjct: 70 NRPLSPHLPLKKPQFSATFSISHRIFGVALGVAIVSV 106
>gi|229821431|ref|YP_002882957.1| succinate dehydrogenase, cytochrome b556 subunit [Beutenbergia
cavernae DSM 12333]
gi|229567344|gb|ACQ81195.1| succinate dehydrogenase, cytochrome b556 subunit [Beutenbergia
cavernae DSM 12333]
Length = 142
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ ++HR+TG +++L V V + +S+ + + +
Sbjct: 23 TLYRGREGMWSWVLHRVTGMLIFLFLLVHVLDTALVRVSPEAYNSVIGHYKTPIMGLGEA 82
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
A++ H G+R ++ D K M I I +++
Sbjct: 83 GLVAAILFHAFNGVRIILVDF-WAKGPKYQRLMMWIVIGLAVVL 125
>gi|149204398|ref|ZP_01881365.1| succinate dehydrogenase, cytochrome b subunit [Roseovarius sp.
TM1035]
gi|149142283|gb|EDM30330.1| succinate dehydrogenase, cytochrome b subunit [Roseovarius sp.
TM1035]
Length = 113
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 29/72 (40%)
Query: 18 RLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYT 77
R P F ++HRI+G + L P + L + + + ++ F
Sbjct: 6 RSHPLWFAFVLHRISGLALALFLPAHFWLLSQAITAPARLDGFLAFAENPLVKIAEFGLV 65
Query: 78 WAVIHHMLGGIR 89
+ + HM GG+R
Sbjct: 66 FLLAVHMFGGLR 77
>gi|300743787|ref|ZP_07072807.1| succinate dehydrogenase, cytochrome b556 subunit [Rothia
dentocariosa M567]
gi|300380148|gb|EFJ76711.1| succinate dehydrogenase, cytochrome b556 subunit [Rothia
dentocariosa M567]
Length = 151
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 32/81 (39%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG ++ V V + +S+ V +
Sbjct: 7 TLYRGRWGMWSWVAHRVTGIAIFFFLLVHVLDTAVVRISPEAYNSVLGLYKNPVMGLGET 66
Query: 75 LYTWAVIHHMLGGIRYLIWDV 95
A+++H GIR ++ D
Sbjct: 67 ALVAAIVYHAFNGIRIILIDF 87
>gi|51893775|ref|YP_076466.1| succinate dehydrogenase membrane subunit [Symbiobacterium
thermophilum IAM 14863]
gi|51857464|dbj|BAD41622.1| succinate dehydrogenase membrane subunit [Symbiobacterium
thermophilum IAM 14863]
Length = 140
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIA-NGEHTLSSLRCYMDGSVFEVCLFLYTWAVI 81
M+ ++HRITG + + + ++ + G + M ++ V +L A++
Sbjct: 27 MWSHVLHRITGVAITVFLLLHIWEITSVVRGGAAGFDTKMAGMAAKLWVVGEWLLFLALV 86
Query: 82 HHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
H + GIR ++ D+ + ++ + I S + + I
Sbjct: 87 FHAINGIRLILLDLGWGVREQKRNF--WVVFILSAVIITI 124
>gi|283458663|ref|YP_003363298.1| succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Rothia mucilaginosa DY-18]
gi|283134713|dbj|BAI65478.1| succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Rothia mucilaginosa DY-18]
Length = 152
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 31/81 (38%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HRITG ++ V + + + + + +
Sbjct: 8 TLYRGRWGMWSWVAHRITGIAIFFFLLVHILDTAVVRISPEAYNGVLSLYKNPIMGLGET 67
Query: 75 LYTWAVIHHMLGGIRYLIWDV 95
A+++H GIR ++ D
Sbjct: 68 ALVAAIVYHAFNGIRIILIDF 88
>gi|226365716|ref|YP_002783499.1| succinate dehydrogenase cytochrome b subunit [Rhodococcus opacus
B4]
gi|226244206|dbj|BAH54554.1| succinate dehydrogenase cytochrome b subunit [Rhodococcus opacus
B4]
Length = 156
Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 35/81 (43%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR P M+ ++HRITG + + V V + T S+ + +
Sbjct: 38 SLYRGDPGMWSWVLHRITGVMTFFFLFVHVLDTALVRVNPDTYDSVIETYKNPIVGLMEL 97
Query: 75 LYTWAVIHHMLGGIRYLIWDV 95
AV++H L G+R ++ D
Sbjct: 98 ALVAAVLYHALNGVRVMLVDF 118
>gi|119621185|gb|EAX00780.1| UBX domain containing 4, isoform CRA_d [Homo sapiens]
Length = 56
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 73 LFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMA 108
F + +++H GI++L+WD+ L Q
Sbjct: 5 KFALVFPLMYHTWNGIQHLMWDLGKGLKIPQLYQSG 40
>gi|255327364|ref|ZP_05368438.1| succinate dehydrogenase, cytochrome b556 subunit [Rothia
mucilaginosa ATCC 25296]
gi|255295644|gb|EET74987.1| succinate dehydrogenase, cytochrome b556 subunit [Rothia
mucilaginosa ATCC 25296]
Length = 152
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 31/81 (38%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HRITG ++ V + + + + + +
Sbjct: 8 TLYRGRWGMWSWVAHRITGIAIFFFLLVHILDTAVVRISPEAYNGVLSLYKNPIMGLGET 67
Query: 75 LYTWAVIHHMLGGIRYLIWDV 95
A+++H GIR ++ D
Sbjct: 68 ALVAAIVYHAFNGIRIILIDF 88
>gi|289804528|ref|ZP_06535157.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhi str.
AG3]
Length = 65
Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASILTVLIV 122
MDG + + ++ A+ +H++ GIR+++ D + + + AKI+ + +++ L+
Sbjct: 1 MDGFIVKFIMWGILTALAYHVIVGIRHMLMDFGYLEETFEAGQRSAKISFVITVVLSLLA 60
Query: 123 WII 125
++
Sbjct: 61 GVL 63
>gi|313649638|gb|EFS14062.1| succinate dehydrogenase, cytochrome b556 [Shigella flexneri 2a str.
2457T]
gi|320193115|gb|EFW67755.1| Succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
O157:H7 str. EC1212]
gi|323170840|gb|EFZ56490.1| succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
LT-68]
gi|326341541|gb|EGD65331.1| Succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
O157:H7 str. 1044]
gi|326345759|gb|EGD69498.1| Succinate dehydrogenase cytochrome b-556 subunit [Escherichia coli
O157:H7 str. 1125]
gi|332096482|gb|EGJ01478.1| succinate dehydrogenase cytochrome b-556 subunit [Shigella
dysenteriae 155-74]
gi|332761178|gb|EGJ91464.1| succinate dehydrogenase, cytochrome b556 [Shigella flexneri
2747-71]
gi|332763961|gb|EGJ94199.1| succinate dehydrogenase, cytochrome b556 [Shigella flexneri K-671]
gi|332768182|gb|EGJ98367.1| succinate dehydrogenase membrane protein [Shigella flexneri
2930-71]
gi|333021482|gb|EGK40732.1| succinate dehydrogenase, cytochrome b556 [Shigella flexneri K-304]
Length = 65
Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 64 MDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASILTVLIV 122
M + ++ A+ +H++ GIR+++ D + + + AKI+ + +++ L+
Sbjct: 1 MGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLA 60
Query: 123 WII 125
++
Sbjct: 61 GVL 63
>gi|125537865|gb|EAY84260.1| hypothetical protein OsI_05640 [Oryza sativa Indica Group]
Length = 168
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVV 43
NRPLSPHL + + + SI HRI G+ + +
Sbjct: 120 NRPLSPHLPLKKPQLSATFSISHRIFGAALGAAIISI 156
>gi|315445770|ref|YP_004078649.1| succinate dehydrogenase subunit C [Mycobacterium sp. Spyr1]
gi|315264073|gb|ADU00815.1| succinate dehydrogenase subunit C [Mycobacterium sp. Spyr1]
Length = 142
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 43/112 (38%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
YR P M+ ++HRI+G+ ++ V V + + + + +
Sbjct: 23 TFYRGDPGMWSWLLHRISGATIFFFLFVHVLDTALVRVSPQAYNEVIETYKTPIVGLMEI 82
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
AV++H L GIR ++ D + + I I +L + +I
Sbjct: 83 GLVAAVLYHALNGIRIILIDFWSEGPRHQRKMLWIIAGIFLVLFTAGLGVIG 134
>gi|289555595|ref|ZP_06444805.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis KZN 605]
gi|289440227|gb|EFD22720.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis KZN 605]
Length = 152
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR P M+ + HRI+G+ ++ V V + T +++ + + +
Sbjct: 33 TLYRGDPGMWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEY 92
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
AV+ H L GIR ++ D + Q + II S+ +L+V
Sbjct: 93 GLVAAVLFHALNGIRVILID---FWSEGPRYQRLMLWIIGSVFLLLMV 137
>gi|85706042|ref|ZP_01037138.1| putative succinate dehydrogenase cytochrome b-556 subunit
[Roseovarius sp. 217]
gi|85669630|gb|EAQ24495.1| putative succinate dehydrogenase cytochrome b-556 subunit
[Roseovarius sp. 217]
Length = 113
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%)
Query: 18 RLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYT 77
R P ++HR++G + L P + L + + + ++ F
Sbjct: 6 RSHPLWLAFVLHRVSGLALALFLPAHFWLLAQAITAPARLDGFLAFAENPLVKIAEFGLV 65
Query: 78 WAVIHHMLGGIR 89
+ + HM GG+R
Sbjct: 66 FLLAVHMFGGLR 77
>gi|323357072|ref|YP_004223468.1| succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Microbacterium testaceum StLB037]
gi|323273443|dbj|BAJ73588.1| succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Microbacterium testaceum StLB037]
Length = 144
Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 4/119 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+ RP +YR M+ ++HRITG ++ V + I ++
Sbjct: 12 KETTSKRPRG---TLYRGREGMWSWVLHRITGVAIFFFLLVHILDTALIRVSPEAYDAVI 68
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + A+ +H G+R ++ D + + ++T+L
Sbjct: 69 GTYKNPIMGLGEVALVGAIAYHAFNGLRIILVDFWPWATRHQRQLW-WGVLGLWVVTML 126
>gi|302524160|ref|ZP_07276502.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces sp.
AA4]
gi|302433055|gb|EFL04871.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces sp.
AA4]
Length = 149
Score = 48.1 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 34/81 (41%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
YR P M+ ++HRITG + + V V + +T + + +
Sbjct: 27 TFYRGDPGMWSWVLHRITGVLTFFFLFVHVLDTALVRVSPNTYDQVIETYKTPIVNLLEV 86
Query: 75 LYTWAVIHHMLGGIRYLIWDV 95
AV++H L G+R L+ D
Sbjct: 87 GLVGAVLYHALNGLRVLLVDF 107
>gi|239744168|ref|XP_002343047.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like [Homo sapiens]
gi|239749866|ref|XP_002347190.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like [Homo sapiens]
gi|310110029|ref|XP_003119518.1| PREDICTED: succinate dehydrogenase cytochrome b560 subunit,
mitochondrial-like [Homo sapiens]
Length = 150
Score = 48.1 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVV 36
+ NRP+SPH+ IY M ++I H TG+ +
Sbjct: 44 KNTGLNRPVSPHVTIYSWSLPMAMAICHHDTGTAL 78
>gi|145225422|ref|YP_001136100.1| succinate dehydrogenase, cytochrome b subunit [Mycobacterium gilvum
PYR-GCK]
gi|145217908|gb|ABP47312.1| succinate dehydrogenase subunit C [Mycobacterium gilvum PYR-GCK]
Length = 142
Score = 48.1 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 43/112 (38%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
YR P M+ ++HRI+G+ ++ V V + + + + +
Sbjct: 23 TFYRGDPGMWSWLLHRISGATIFFFLFVHVLDTALVRVSPQAYNEVIETYKTPIVGLMEI 82
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
AV++H L GIR ++ D + + I I +L + +I
Sbjct: 83 GLVAAVLYHALNGIRIILIDFWSEGPRHQRKMLWIIAGIFIVLFTAGLGVIG 134
>gi|467185|gb|AAA17343.1| L308_F2_64 [Mycobacterium leprae]
Length = 244
Score = 48.1 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 4/127 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+S + RP + YR P M+ ++HRI+G+ ++ V V + T +++
Sbjct: 109 ASSRRRRPPT---TTYRGDPGMWSWVLHRISGATIFFFLFVHVLDAAMLRVNPQTYNAVL 165
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + AV H L GIR ++ D + M I + +L ++
Sbjct: 166 STYKAPIVGFMEYGLVAAVGFHGLNGIRVILIDF-WSEGPRHQRLMLWIISVIFLLLLVP 224
Query: 122 VWIIKDI 128
++ I
Sbjct: 225 AGVVIGI 231
>gi|148824520|ref|YP_001289274.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis F11]
gi|253800361|ref|YP_003033362.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis KZN 1435]
gi|254233926|ref|ZP_04927251.1| succinate dehydrogenase (cytochrome B-556 subunit) sdhC
[Mycobacterium tuberculosis C]
gi|254365938|ref|ZP_04981983.1| succinate dehydrogenase (cytochrome B-556 subunit) sdhC
[Mycobacterium tuberculosis str. Haarlem]
gi|289747135|ref|ZP_06506513.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis 02_1987]
gi|289759461|ref|ZP_06518839.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis T85]
gi|298526793|ref|ZP_07014202.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis 94_M4241A]
gi|308232414|ref|ZP_07664075.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu001]
gi|308370224|ref|ZP_07420706.2| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu002]
gi|308371308|ref|ZP_07667131.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu003]
gi|308372498|ref|ZP_07667392.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu004]
gi|308373703|ref|ZP_07433382.2| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu005]
gi|308374839|ref|ZP_07667874.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu006]
gi|308376069|ref|ZP_07668181.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu007]
gi|308377300|ref|ZP_07668476.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu008]
gi|308378269|ref|ZP_07668701.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu009]
gi|308379480|ref|ZP_07668967.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu010]
gi|308380646|ref|ZP_07669233.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu011]
gi|308406118|ref|ZP_07669512.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu012]
gi|124599455|gb|EAY58559.1| succinate dehydrogenase (cytochrome B-556 subunit) sdhC
[Mycobacterium tuberculosis C]
gi|134151451|gb|EBA43496.1| succinate dehydrogenase (cytochrome B-556 subunit) sdhC
[Mycobacterium tuberculosis str. Haarlem]
gi|148723047|gb|ABR07672.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis F11]
gi|253321864|gb|ACT26467.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis KZN 1435]
gi|289687663|gb|EFD55151.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis 02_1987]
gi|289715025|gb|EFD79037.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis T85]
gi|298496587|gb|EFI31881.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis 94_M4241A]
gi|308214022|gb|EFO73421.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu001]
gi|308325118|gb|EFP13969.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu002]
gi|308329339|gb|EFP18190.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu003]
gi|308333170|gb|EFP22021.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu004]
gi|308336655|gb|EFP25506.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu005]
gi|308340690|gb|EFP29541.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu006]
gi|308344424|gb|EFP33275.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu007]
gi|308348428|gb|EFP37279.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu008]
gi|308353051|gb|EFP41902.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu009]
gi|308357005|gb|EFP45856.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu010]
gi|308360861|gb|EFP49712.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu011]
gi|308364446|gb|EFP53297.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis SUMu012]
gi|323718187|gb|EGB27369.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis CDC1551A]
gi|328460094|gb|AEB05517.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis KZN 4207]
Length = 144
Score = 48.1 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR P M+ + HRI+G+ ++ V V + T +++ + + +
Sbjct: 25 TLYRGDPGMWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEY 84
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
AV+ H L GIR ++ D + Q + II S+ +L+V
Sbjct: 85 GLVAAVLFHALNGIRVILID---FWSEGPRYQRLMLWIIGSVFLLLMV 129
>gi|268315783|ref|YP_003289502.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodothermus
marinus DSM 4252]
gi|262333317|gb|ACY47114.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodothermus
marinus DSM 4252]
Length = 136
Score = 48.1 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 14 LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCL 73
LQ YR+ M ++HR+TG + + + V+ + + E + L +F++
Sbjct: 16 LQRYRIRTGMLAWLLHRLTGIGLVVYLILHVWGLRALTDRE-AFNELIATYHAPIFKIGE 74
Query: 74 FLYTWAVIHHMLGGIR 89
FL AV +H L G+R
Sbjct: 75 FLLLAAVAYHALNGLR 90
>gi|239917022|ref|YP_002956580.1| succinate dehydrogenase, cytochrome b556 subunit [Micrococcus
luteus NCTC 2665]
gi|281414516|ref|ZP_06246258.1| succinate dehydrogenase, cytochrome b556 subunit [Micrococcus
luteus NCTC 2665]
gi|239838229|gb|ACS30026.1| succinate dehydrogenase, cytochrome b556 subunit [Micrococcus
luteus NCTC 2665]
Length = 134
Score = 47.7 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 1/110 (0%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG V++ V V + ++ F +
Sbjct: 16 TLYRGHGGMWSWVGHRVTGVVIFFYLLVHVLDTALVRVSPEAYDAVIGSYKTWYFALGEA 75
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
A+I H L G+R ++ D + T + I + ++ L I
Sbjct: 76 GLVAAIIFHALNGLRIILVDFWKGGTQHHKTLL-WIVLGLWVVLTLGFAI 124
>gi|302408597|ref|XP_003002133.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261359054|gb|EEY21482.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 149
Score = 47.7 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 10/77 (12%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMF-VSIVHRITGSVVYLGTPV---------VVFWFFCI 50
+++ + RP SPHL YR+ T F SI R TG + V ++ W
Sbjct: 53 LAAQRLQRPTSPHLTAYRIDQTWFGASIWTRFTGGGLSAALYVYLGAYVAAPLLGWHIES 112
Query: 51 ANGEHTLSSLRCYMDGS 67
A G
Sbjct: 113 ATVAAAFGCPASGRQGW 129
>gi|91203773|emb|CAJ71426.1| similar to succinate dehydrogenase subunit C [Candidatus Kuenenia
stuttgartiensis]
Length = 126
Score = 47.4 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 1/97 (1%)
Query: 29 HRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGI 88
HRI+G ++ L + ++ + G+ D + ++ + H+L GI
Sbjct: 29 HRISGILLTLFLFLHIWTLSAVFRGKDAYDYTISKFDTDFGYIFQYILLLTIAFHLLNGI 88
Query: 89 RYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
R I D + + I I+ V+ + +
Sbjct: 89 RITIMDF-CGFTRSQKQMLRLAIFILFIIAVIGFYSV 124
>gi|284029310|ref|YP_003379241.1| succinate dehydrogenase, cytochrome b556 subunit [Kribbella
flavida DSM 17836]
gi|283808603|gb|ADB30442.1| succinate dehydrogenase, cytochrome b556 subunit [Kribbella
flavida DSM 17836]
Length = 125
Score = 47.4 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 31/81 (38%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ ++HRITG ++ V V + + + V +
Sbjct: 8 TLYRGREGMWSWVLHRITGVGIFFFLLVHVLDTALVRVSPEAYNEVIGTYKNPVVGLLEV 67
Query: 75 LYTWAVIHHMLGGIRYLIWDV 95
A++ H G+R ++ D
Sbjct: 68 GLVAAILFHAFNGVRLILVDF 88
>gi|325283229|ref|YP_004255770.1| succinate dehydrogenase, cytochrome b556 subunit [Deinococcus
proteolyticus MRP]
gi|324315038|gb|ADY26153.1| succinate dehydrogenase, cytochrome b556 subunit [Deinococcus
proteolyticus MRP]
Length = 118
Score = 47.4 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+HR++G + + V I GE + D F + L T V +H G
Sbjct: 13 LHRLSGLAILAYFLLHVISISLIIFGEEAYMRVHHLYDLWPFRIGLIFVTAGVAYHAFNG 72
Query: 88 IRYLIWD-VSLCLDKKIATQMAKINIIASILTVLIVWI 124
+R + D + + + A + I A ++T+ +W+
Sbjct: 73 LRIMAMDFTGKGVAYQRQSWYAVLAITA-LITLYTLWV 109
>gi|86739394|ref|YP_479794.1| succinate dehydrogenase, cytochrome b subunit [Frankia sp. CcI3]
gi|86566256|gb|ABD10065.1| succinate dehydrogenase subunit C [Frankia sp. CcI3]
Length = 131
Score = 47.4 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 36/87 (41%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSV 68
P +P +YR M+ + HRITG +V+ V + + + + +
Sbjct: 2 PKAPAGTLYRGREGMWSWVAHRITGVLVFFFLFAHVLDTALVRVSPTSYNEVIEVYKSPI 61
Query: 69 FEVCLFLYTWAVIHHMLGGIRYLIWDV 95
+ AV++H L GIR ++ D
Sbjct: 62 VNLLEVGLVAAVLYHALNGIRIMLIDF 88
>gi|258651547|ref|YP_003200703.1| succinate dehydrogenase, cytochrome b556 subunit [Nakamurella
multipartita DSM 44233]
gi|258554772|gb|ACV77714.1| succinate dehydrogenase, cytochrome b556 subunit [Nakamurella
multipartita DSM 44233]
Length = 143
Score = 47.4 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HRITG + + V + + + + +
Sbjct: 20 SVYRGDAGMWSWVAHRITGVLTFFFLFAHVLDTALVRVSPEAYNQVIETYKNPLVNLMEV 79
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
AV++H L GIR ++ D K Q + II +I V++V
Sbjct: 80 GLVGAVLYHALNGIRVMLVD---FWAKGARYQRTMLWIILAIWFVVMV 124
>gi|111023211|ref|YP_706183.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Rhodococcus jostii RHA1]
gi|110822741|gb|ABG98025.1| probable succinate dehydrogenase hydrophobic membrane anchor
protein [Rhodococcus jostii RHA1]
Length = 134
Score = 47.0 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 35/81 (43%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR P M+ ++HRITG + + V V + T S+ + +
Sbjct: 16 SLYRGDPGMWSWVLHRITGVMTFFFLFVHVLDTALVRVNPDTYDSVIETYKNPIVGLMEL 75
Query: 75 LYTWAVIHHMLGGIRYLIWDV 95
AV++H L G+R ++ D
Sbjct: 76 ALVAAVLYHALNGVRVMLVDF 96
>gi|295396419|ref|ZP_06806581.1| succinate dehydrogenase cytochrome b558 subunit [Brevibacterium
mcbrellneri ATCC 49030]
gi|294970721|gb|EFG46634.1| succinate dehydrogenase cytochrome b558 subunit [Brevibacterium
mcbrellneri ATCC 49030]
Length = 125
Score = 47.0 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 1/108 (0%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG ++ V V + ++ + +
Sbjct: 8 TLYRGHEGMWSWVAHRVTGVGIFFFLLVHVLDTALVRVSPAAYDAVIGTYKTPIMAMAEI 67
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
A+I H G+R ++ D K +M +I ++ ++
Sbjct: 68 GLVAAIIFHAFNGVRVILVDFWKG-GPKNQRKMFWAVMILWLIVMIAF 114
>gi|296138696|ref|YP_003645939.1| succinate dehydrogenase, cytochrome b556 subunit [Tsukamurella
paurometabola DSM 20162]
gi|296026830|gb|ADG77600.1| succinate dehydrogenase, cytochrome b556 subunit [Tsukamurella
paurometabola DSM 20162]
Length = 134
Score = 47.0 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+Y+ P M ++HRI+G ++ V V I ++ + +
Sbjct: 17 SLYKGDPGMLNWVLHRISGVTIFFFLFVHVLDTAVIRIDPEAYDAVIKTYKTPLIGLLEI 76
Query: 75 LYTWAVIHHMLGGIRYLIWDV-SLCLDKKIATQMAKINIIA 114
A++ H L GIR ++ D S + + A +A +
Sbjct: 77 GLVMAILFHALNGIRVILVDFWSKGVQYQKAMSIAVWVVFL 117
>gi|291287899|ref|YP_003504715.1| succinate dehydrogenase, cytochrome b556 subunit [Denitrovibrio
acetiphilus DSM 12809]
gi|290885059|gb|ADD68759.1| succinate dehydrogenase, cytochrome b556 subunit [Denitrovibrio
acetiphilus DSM 12809]
Length = 118
Score = 47.0 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/101 (15%), Positives = 39/101 (38%), Gaps = 9/101 (8%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YR P M ++HRITG + + + I ++ + + S + L
Sbjct: 15 YRKHPGMVAWLLHRITGVI------IGSYLIMHILGVSGVVAPFQSVVSLSFVKALLLA- 67
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASIL 117
+ +H G+R L+ + +++ + + +++
Sbjct: 68 --SFSYHAFNGVRILLMEFGAAAERETFKKYFMAVVFLTLV 106
>gi|226305532|ref|YP_002765492.1| succinate dehydrogenase cytochrome b subunit [Rhodococcus
erythropolis PR4]
gi|229489604|ref|ZP_04383467.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodococcus
erythropolis SK121]
gi|226184649|dbj|BAH32753.1| probable succinate dehydrogenase cytochrome b subunit [Rhodococcus
erythropolis PR4]
gi|229323701|gb|EEN89459.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodococcus
erythropolis SK121]
Length = 142
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 1/105 (0%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR P M+ ++HRITG + V V + T ++ + +
Sbjct: 24 SLYRGDPGMWSWVLHRITGVATFFFLFVHVLDTALVRVNPDTYDAVIDTYKNPLVGLMEI 83
Query: 75 LYTWAVIHHMLGGIRYLIWDV-SLCLDKKIATQMAKINIIASILT 118
V++H L G+R ++ D S + + I ++
Sbjct: 84 GLVGVVLYHALNGVRVMLVDFWSKGPKYQRVMLWTILTIWFLVMI 128
>gi|119572988|gb|EAW52603.1| succinate dehydrogenase complex, subunit C, integral membrane
protein, 15kDa, isoform CRA_f [Homo sapiens]
Length = 64
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 23 MFVSIVHRITGSVVYLGTPVV-VFWFFCIANGEHTLSSLRCYMDGS-VFEVCLFLYTWAV 80
M +SI HR TG + G + + N E L ++ G + F + +
Sbjct: 1 MAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPL 60
Query: 81 IHHM 84
++H
Sbjct: 61 MYHT 64
>gi|313768551|ref|YP_004062225.1| Sdh3 [Plocamiocolax pulvinata]
gi|312844678|gb|ADR03241.1| Sdh3 [Plocamiocolax pulvinata]
Length = 112
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 39/93 (41%)
Query: 7 NRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDG 66
NRP++PH+ IY + SI++R++ + + I+N S +
Sbjct: 3 NRPITPHITIYLPQISSTFSILNRVSSICTIILLLFSILIMKFISNLYSLYYSFHYIISN 62
Query: 67 SVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCL 99
S++ + ++H G ++W ++ L
Sbjct: 63 SIYIYIYLIVLINYVYHFFQGFLSILWSFNIFL 95
>gi|194335045|ref|YP_002016905.1| succinate dehydrogenase, cytochrome b556 subunit [Prosthecochloris
aestuarii DSM 271]
gi|194312863|gb|ACF47258.1| succinate dehydrogenase, cytochrome b556 subunit [Prosthecochloris
aestuarii DSM 271]
Length = 144
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YR+ P M ++HR+TG ++ + P+ V + + +F++
Sbjct: 26 YRVKPGMAAWVLHRLTGLLLVIYLPLHVMGLRSL-SDPVRFEKYVTLYRNPLFKMAEVAL 84
Query: 77 TWAVIHHMLGGIRYLIWDV 95
V H GIR L+ D+
Sbjct: 85 LAVVAFHAFNGIRILLQDL 103
>gi|197107553|gb|ACH42356.1| succinate dehydrogenase subunit 3 [Eschscholzia californica]
Length = 76
Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRC----YMDGSVFE 70
IY+ T I HRI+G+ +L T V+ + C+ G + + +
Sbjct: 1 PIYKPELTSTFPIFHRISGA--FLATIVLFSYLLCLKIGLICFTYENFYQLLFYSSKLIL 58
Query: 71 VCLFLYTWAVIHHMLGGI 88
+ + + A+ +H+ G+
Sbjct: 59 ISVEITALALSYHLYNGV 76
>gi|88856453|ref|ZP_01131111.1| succinate dehydrogenase, cytochrome b-556 subunit [marine
actinobacterium PHSC20C1]
gi|88814320|gb|EAR24184.1| succinate dehydrogenase, cytochrome b-556 subunit [marine
actinobacterium PHSC20C1]
Length = 145
Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 1/120 (0%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+S K P P +YR M+ ++HRITG +Y V + + +++
Sbjct: 14 LSPPKIRSPRRPAGTLYRGNEGMWSWVLHRITGVAIYFFLLVHILDTALVRVSPEAYNAV 73
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+ + A+ H L G+R ++ D K + I I ++ +
Sbjct: 74 IDTYKTPIMGLGEIALVAAIGFHALNGLRIILIDF-WAFGAKHQRVLFWIVIAIWLVLLA 132
>gi|302519501|ref|ZP_07271843.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
sp. SPB78]
gi|302428396|gb|EFL00212.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
sp. SPB78]
Length = 126
Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 29/75 (38%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG +++ V V + + + + +
Sbjct: 5 TLYRGREGMWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDDVVATYKNPIVALLEY 64
Query: 75 LYTWAVIHHMLGGIR 89
A++ H L G+R
Sbjct: 65 GLVAAILFHALNGLR 79
>gi|300782783|ref|YP_003763074.1| succinate dehydrogenase cytochrome b-556 subunit [Amycolatopsis
mediterranei U32]
gi|299792297|gb|ADJ42672.1| succinate dehydrogenase cytochrome b-556 subunit [Amycolatopsis
mediterranei U32]
Length = 147
Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 33/81 (40%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
YR P M+ ++HRITG + + V V + +T + + +
Sbjct: 25 TFYRGDPGMWSWVLHRITGVLTFFFLFVHVLDTALVRVSPNTYDQVIETYKTPIVNLLEV 84
Query: 75 LYTWAVIHHMLGGIRYLIWDV 95
AV+ H L GIR ++ D
Sbjct: 85 GLVGAVLFHALNGIRVMLVDF 105
>gi|328951128|ref|YP_004368463.1| succinate dehydrogenase, cytochrome b556 subunit [Marinithermus
hydrothermalis DSM 14884]
gi|328451452|gb|AEB12353.1| succinate dehydrogenase, cytochrome b556 subunit [Marinithermus
hydrothermalis DSM 14884]
Length = 118
Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+HRI+G + + V G + L + ++F + L L V++H L G
Sbjct: 13 LHRISGVAILAFLLLHVLDISLAMWGPEVFNRLLAFYHQTIFRIGLLLVIAGVLYHALNG 72
Query: 88 IRYLIWDV 95
+R ++ D
Sbjct: 73 LRIILMDF 80
>gi|289705969|ref|ZP_06502343.1| succinate dehydrogenase, cytochrome b556 subunit [Micrococcus
luteus SK58]
gi|289557306|gb|EFD50623.1| succinate dehydrogenase, cytochrome b556 subunit [Micrococcus
luteus SK58]
Length = 134
Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 1/110 (0%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG V++ V V + +++ F +
Sbjct: 16 TLYRGHGGMWSWVGHRVTGVVIFFYLLVHVLDTALVRVSPEAYNAVIGSYKTWYFALGEA 75
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
A+I H L G+R ++ D + T + I + + L I
Sbjct: 76 GLVAAIIFHALNGLRIILVDFWKGGTQHHKTLL-WIVLGLWAVLTLGFAI 124
>gi|289641512|ref|ZP_06473675.1| succinate dehydrogenase, cytochrome b556 subunit [Frankia
symbiont of Datisca glomerata]
gi|289508722|gb|EFD29658.1| succinate dehydrogenase, cytochrome b556 subunit [Frankia
symbiont of Datisca glomerata]
Length = 131
Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 32/81 (39%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSV 68
P +P +YR M+ + HRITG +++ V + + ++ V
Sbjct: 2 PKAPAGTLYRGREGMWSWVAHRITGVLIFFFLFAHVLDTALVRVSPSSYDTVIATYKNPV 61
Query: 69 FEVCLFLYTWAVIHHMLGGIR 89
+ AV+ H L GIR
Sbjct: 62 VNLLEVGLVAAVLFHALNGIR 82
>gi|163839068|ref|YP_001623473.1| succinate dehydrogenase membrane anchor subunit [Renibacterium
salmoninarum ATCC 33209]
gi|162952544|gb|ABY22059.1| succinate dehydrogenase membrane anchor subunit [Renibacterium
salmoninarum ATCC 33209]
Length = 152
Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 30/81 (37%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSV 68
P P +YR M+ + HR+TG V++ V V + ++ +
Sbjct: 24 PTKPASTLYRGREGMWSWVAHRVTGVVIFFFLLVHVLDTSLVRVSPEAYDAVIGTYKNPL 83
Query: 69 FEVCLFLYTWAVIHHMLGGIR 89
+ A++ H G+R
Sbjct: 84 MGLGEAALVAAIVFHAFNGLR 104
>gi|295838573|ref|ZP_06825506.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
sp. SPB74]
gi|197697801|gb|EDY44734.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
sp. SPB74]
Length = 126
Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 29/75 (38%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG +++ V V + + V + +
Sbjct: 5 TLYRGREGMWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDDVVATYKNPVVALLEY 64
Query: 75 LYTWAVIHHMLGGIR 89
A++ H L G+R
Sbjct: 65 GLVAAILFHALNGLR 79
>gi|134103013|ref|YP_001108674.1| putative succinate dehydrogenase membrane subunit
[Saccharopolyspora erythraea NRRL 2338]
gi|291005230|ref|ZP_06563203.1| putative succinate dehydrogenase membrane subunit
[Saccharopolyspora erythraea NRRL 2338]
gi|133915636|emb|CAM05749.1| putative succinate dehydrogenase membrane subunit
[Saccharopolyspora erythraea NRRL 2338]
Length = 145
Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 31/81 (38%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HRITG + + V V + + ++ V +
Sbjct: 23 SLYRGDLGMWSWVAHRITGVLTFFFLFVHVLDTALVRVSPNAYDTVIETYKHPVMILFEL 82
Query: 75 LYTWAVIHHMLGGIRYLIWDV 95
AV+ H GIR ++ D
Sbjct: 83 GLLAAVLFHAFNGIRVMLVDF 103
>gi|189501421|ref|YP_001960891.1| succinate dehydrogenase, cytochrome b556 subunit [Chlorobium
phaeobacteroides BS1]
gi|189496862|gb|ACE05410.1| succinate dehydrogenase, cytochrome b556 subunit [Chlorobium
phaeobacteroides BS1]
Length = 154
Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 3/105 (2%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YR+ M I+HR+TG + L + + + N + +F+ +
Sbjct: 37 YRVRSGMAAWILHRVTGLSLVLYLAIHIMGLRSLGN-PLAFEAYITGYRNPLFKFAEVML 95
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+V H G+R D+ + + + +I+ +I
Sbjct: 96 LGSVAFHAFNGLRIFAQDM--YFRSERQKPLFYAVLALTIIVTII 138
>gi|119963360|ref|YP_947031.1| succinate dehydrogenase, cytochrome b556 subunit [Arthrobacter
aurescens TC1]
gi|119950219|gb|ABM09130.1| succinate dehydrogenase, cytochrome b556 subunit [Arthrobacter
aurescens TC1]
Length = 126
Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 31/81 (38%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSV 68
P P +YR M+ + HRITG V++ V V + +++ +
Sbjct: 2 PTKPAGTLYRGREGMWSWVGHRITGVVIFFFLLVHVLDTSLVRVSPEAYTAVIGAYKNPL 61
Query: 69 FEVCLFLYTWAVIHHMLGGIR 89
+ A+I H G+R
Sbjct: 62 MALGETGLVAAIIFHAFNGLR 82
>gi|15827295|ref|NP_301558.1| succinate dehydrogenase cytochrome B-556 subunit [Mycobacterium
leprae TN]
gi|221229773|ref|YP_002503189.1| putative succinate dehydrogenase cytochrome B-556 subunit
[Mycobacterium leprae Br4923]
gi|13092844|emb|CAC30208.1| putative succinate dehydrogenase cytochrome B-556 subunit
[Mycobacterium leprae]
gi|219932880|emb|CAR70793.1| putative succinate dehydrogenase cytochrome B-556 subunit
[Mycobacterium leprae Br4923]
Length = 153
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 4/127 (3%)
Query: 2 SSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR 61
+S + RP + YR P M+ ++HRI+G+ ++ V V + T +++
Sbjct: 18 ASSRRRRPPT---TTYRGDPGMWSWVLHRISGATIFFFLFVHVLDAAMLRVNPQTYNAVL 74
Query: 62 CYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ + AV H L GIR ++ D + M I + +L ++
Sbjct: 75 STYKAPIVGFMEYGLVAAVGFHGLNGIRVILIDF-WSEGPRHQRLMLWIISVIFLLLLVP 133
Query: 122 VWIIKDI 128
++ I
Sbjct: 134 AGVVIGI 140
>gi|183981225|ref|YP_001849516.1| succinate dehydrogenase (cytochrome B-556 subunit) SdhC
[Mycobacterium marinum M]
gi|183174551|gb|ACC39661.1| succinate dehydrogenase (cytochrome B-556 subunit) SdhC
[Mycobacterium marinum M]
Length = 112
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M+ ++HRITG+ ++ V V + +S+ + + F AV +
Sbjct: 1 MWSWVLHRITGAAIFFFLFVHVLDTALVRVSPQAYNSVIDTYKTPIVGLMEFGLVIAVSY 60
Query: 83 HMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
H L GIR ++ D + ++ + + L +L+
Sbjct: 61 HALNGIRIILIDF--WSEGPRYQRLMLAVVGVAWLLILV 97
>gi|296168861|ref|ZP_06850533.1| succinate dehydrogenase cytochrome b558 subunit [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295896478|gb|EFG76128.1| succinate dehydrogenase cytochrome b558 subunit [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 151
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR P M+ ++HRI+G+ ++ V V + T +++ V + +
Sbjct: 33 TLYRGDPGMWSWVLHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVIHDYQTPVVGLMEY 92
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDI 128
AV+ H L GIR ++ D + M I + +L ++ ++ I
Sbjct: 93 GLVAAVLFHGLNGIRVILIDF-WSEGTRYQKLMFWIVGVVFLLLMVPAGVVTGI 145
>gi|296128872|ref|YP_003636122.1| succinate dehydrogenase, cytochrome b556 subunit [Cellulomonas
flavigena DSM 20109]
gi|296020687|gb|ADG73923.1| succinate dehydrogenase, cytochrome b556 subunit [Cellulomonas
flavigena DSM 20109]
Length = 132
Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 30/81 (37%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HRITG ++ V V + + + V +
Sbjct: 14 TLYRGREGMWSWVAHRITGFAIFFFLLVHVLDTALVRVSPEAYNDVIGTYKNPVMGLGEA 73
Query: 75 LYTWAVIHHMLGGIRYLIWDV 95
A++ H GIR ++ D
Sbjct: 74 GLVLAIVFHAFNGIRLILVDF 94
>gi|324516067|gb|ADY46410.1| Succinate dehydrogenase cytochrome b560 subunit [Ascaris suum]
Length = 121
Score = 45.4 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 2/92 (2%)
Query: 33 GSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS--VFEVCLFLYTWAVIHHMLGGIRY 90
G + + F + T + + + F+ + + H L GIR+
Sbjct: 12 GCAMAGTLLIGGGGFSVLPLDFTTFVEFIRGLGIPCVILDTFKFIIAFPIAFHTLNGIRF 71
Query: 91 LIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ +D++ D + A + + + L L V
Sbjct: 72 IGFDMAKGTDIPSIYRGAYLVLGLAALISLAV 103
>gi|220911975|ref|YP_002487284.1| succinate dehydrogenase, cytochrome b556 subunit [Arthrobacter
chlorophenolicus A6]
gi|219858853|gb|ACL39195.1| succinate dehydrogenase, cytochrome b556 subunit [Arthrobacter
chlorophenolicus A6]
Length = 126
Score = 45.4 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 1/114 (0%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSV 68
P P +YR M+ + HRITG V++ V V + +++ +
Sbjct: 2 PTKPAGTLYRGREGMWSWVGHRITGVVIFFFLLVHVLDTSLVRVSPEAYTAVIGAYKNPL 61
Query: 69 FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ A++ H G+R + D K QM + ++T++
Sbjct: 62 MALGETGLVAAIVFHAFNGLRIIAVDFWK-KGAKYQRQMLWAVLGLWVVTMVAF 114
>gi|54022916|ref|YP_117158.1| putative succinate dehydrogenase cytochrome b subunit [Nocardia
farcinica IFM 10152]
gi|54014424|dbj|BAD55794.1| putative succinate dehydrogenase cytochrome b subunit [Nocardia
farcinica IFM 10152]
Length = 132
Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 9/113 (7%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR P M+ +HRITG ++ V V + + +
Sbjct: 14 TLYRGDPGMWSWALHRITGVTIFFFLFVHVLDTALVRVSPEVYDEAIETYKNPLVALMEM 73
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKD 127
V+ H L G+R ++ D + QM I L +WI+
Sbjct: 74 GLVVCVLFHALNGVRVILVDF-WSQGPRFQRQMLWIV--------LAIWIVAS 117
>gi|330820917|ref|YP_004349779.1| Succinate dehydrogenase, cytochrome b subunit [Burkholderia
gladioli BSR3]
gi|327372912|gb|AEA64267.1| Succinate dehydrogenase, cytochrome b subunit [Burkholderia
gladioli BSR3]
Length = 122
Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
RITG ++ + T +++ WFF + + ++ F+ A+ +H GIR
Sbjct: 27 RITGVIMAVYTVILLAWFFAARDF--SYDGWASIFATQWMKLATFVTLLALFYHAWVGIR 84
Query: 90 YLIWD 94
+ D
Sbjct: 85 DIWMD 89
>gi|254393799|ref|ZP_05008913.1| succinate dehydrogenase cytochrome b-556 subunit [Streptomyces
clavuligerus ATCC 27064]
gi|294814602|ref|ZP_06773245.1| Succinate dehydrogenase cytochrome b-556 subunit [Streptomyces
clavuligerus ATCC 27064]
gi|197707400|gb|EDY53212.1| succinate dehydrogenase cytochrome b-556 subunit [Streptomyces
clavuligerus ATCC 27064]
gi|294327201|gb|EFG08844.1| Succinate dehydrogenase cytochrome b-556 subunit [Streptomyces
clavuligerus ATCC 27064]
Length = 126
Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 29/75 (38%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG +++ V V + + + + +
Sbjct: 5 TLYRGREGMWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEDYDKVVAVYKTPIVALLEY 64
Query: 75 LYTWAVIHHMLGGIR 89
AV+ H L G+R
Sbjct: 65 GLVAAVLFHALNGLR 79
>gi|238756031|ref|ZP_04617355.1| Succinate dehydrogenase cytochrome b556 subunit [Yersinia ruckeri
ATCC 29473]
gi|238705756|gb|EEP98149.1| Succinate dehydrogenase cytochrome b556 subunit [Yersinia ruckeri
ATCC 29473]
Length = 71
Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 9/68 (13%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 59 SLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASIL 117
M+ + + + A+ +H++ GIR+++ D + T+ A++ + +++
Sbjct: 2 QAAAIMNSFIVKFIFWGILTALAYHIIVGIRHVLMDFGYIEESLAAGTRSAQVAMGLTLV 61
Query: 118 TVLIVWII 125
++ ++
Sbjct: 62 LSVLAGVL 69
>gi|41409539|ref|NP_962375.1| hypothetical protein MAP3441 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41398370|gb|AAS05991.1| SdhC [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 151
Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR P M+ ++HRI+G+ ++ V V + T +++ + V +
Sbjct: 32 TLYRGDPGMWSWVLHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVIHDYQMPIVGVMEY 91
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDI 128
AV+ H L GIR ++ D + M I + +L ++ ++ I
Sbjct: 92 GLIAAVLFHGLNGIRVILIDF-WSEGPRHQRLMFWIVGVVFLLLMVPAGVVTVI 144
>gi|302342524|ref|YP_003807053.1| succinate dehydrogenase, cytochrome b556 subunit [Desulfarculus
baarsii DSM 2075]
gi|301639137|gb|ADK84459.1| succinate dehydrogenase, cytochrome b556 subunit [Desulfarculus
baarsii DSM 2075]
Length = 125
Score = 45.0 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YRL P + RI+G + L + V+ IA G + + +F +
Sbjct: 10 YRLHPGYIAWLFQRISGLALVLYLIMHVYVIHHIALGRQAFDEIMAVVQSPLFHLAEAAL 69
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIA--TQMAKINIIASILTVLIV 122
AV++H + G+R ++ D DK+ + +++ A I+ +
Sbjct: 70 LAAVVYHGVNGLRVILLDYGRAADKQKISPWVLGVMSLCAVIVLAGAI 117
>gi|240169116|ref|ZP_04747775.1| succinate dehydrogenase (cytochrome B-556 subunit) SdhC
[Mycobacterium kansasii ATCC 12478]
Length = 112
Score = 45.0 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 32/73 (43%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M+ ++HRITG+ ++ V V + +S+ V + F AV +
Sbjct: 1 MWSWVLHRITGATIFFFLFVHVLDTALVRVSPQAYNSVIGTYKTPVVGLMEFGLVVAVSY 60
Query: 83 HMLGGIRYLIWDV 95
H L GIR ++ D
Sbjct: 61 HALNGIRIILIDF 73
>gi|77465162|ref|YP_354665.1| putative succinate dehydrogenase cytochrome b-556 subunit
[Rhodobacter sphaeroides 2.4.1]
gi|126464623|ref|YP_001045736.1| succinate dehydrogenase, cytochrome b subunit [Rhodobacter
sphaeroides ATCC 17029]
gi|77389580|gb|ABA80764.1| putative succinate dehydrogenase cytochrome b-556 subunit
[Rhodobacter sphaeroides 2.4.1]
gi|126106434|gb|ABN78964.1| succinate dehydrogenase, cytochrome b subunit [Rhodobacter
sphaeroides ATCC 17029]
Length = 114
Score = 45.0 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 4/105 (3%)
Query: 18 RLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYT 77
R P +VHR++G + L PV + + S + + ++ F
Sbjct: 7 RSHPLWLAYLVHRLSGLGLALFLPVHFYMLAMVLTDPEGFDSFGLWTQNPLVKMAEFGLV 66
Query: 78 WAVIHHMLGGIRYLIWDV----SLCLDKKIATQMAKINIIASILT 118
+ + H GG+R L ++ AT + A+ L
Sbjct: 67 FLLAAHFFGGLRLLALEMLPWSGRQKTLAAATVAGAFLVAATFLL 111
>gi|221369157|ref|YP_002520253.1| Succinate dehydrogenase, cytochrome b subunit [Rhodobacter
sphaeroides KD131]
gi|332560767|ref|ZP_08415085.1| Succinate dehydrogenase, cytochrome b subunit [Rhodobacter
sphaeroides WS8N]
gi|221162209|gb|ACM03180.1| Succinate dehydrogenase, cytochrome b subunit [Rhodobacter
sphaeroides KD131]
gi|332274565|gb|EGJ19881.1| Succinate dehydrogenase, cytochrome b subunit [Rhodobacter
sphaeroides WS8N]
Length = 114
Score = 45.0 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 4/105 (3%)
Query: 18 RLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYT 77
R P +VHR++G + L PV + + S + + ++ F
Sbjct: 7 RSHPLWLAYLVHRLSGLGLALFLPVHFYMLAMVLTDPEGFDSFGLWTQNPLVKMAEFGLV 66
Query: 78 WAVIHHMLGGIRYLIWDV----SLCLDKKIATQMAKINIIASILT 118
+ + H GG+R L ++ AT + A+ L
Sbjct: 67 FLLAAHFFGGLRLLALEMLPWSGRQKTLAAATVAGAFLVAATFLL 111
>gi|307331944|ref|ZP_07611039.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
violaceusniger Tu 4113]
gi|306882418|gb|EFN13509.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
violaceusniger Tu 4113]
Length = 126
Score = 45.0 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 30/75 (40%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG +++ V V + ++ V + +
Sbjct: 5 TLYRGREGMWSWVAHRVTGVLIFFFLFVHVLDTSLVRVSPEAYDNVVATYKNPVVNLMEY 64
Query: 75 LYTWAVIHHMLGGIR 89
A++ H L G+R
Sbjct: 65 GLVAAILFHALNGLR 79
>gi|288931614|ref|YP_003435674.1| succinate dehydrogenase, subunit C (SdhC) [Ferroglobus placidus DSM
10642]
gi|288893862|gb|ADC65399.1| succinate dehydrogenase, subunit C (SdhC) [Ferroglobus placidus DSM
10642]
Length = 122
Score = 45.0 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 6/110 (5%)
Query: 20 IPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWA 79
+ +HRITG V+ + + + + + G+ SL L A
Sbjct: 12 SLSGVSFSLHRITGMVLLIYLVLHLTFLTSLRYGKDVYESLIEKTVQPATLPLDMLLVLA 71
Query: 80 VIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDIV 129
+H G+R ++ + L ++ + K I + +I WI V
Sbjct: 72 TFYHAFNGMRVILHEFGLAVELR------KALIYVTYALTIIFWIYASYV 115
>gi|256380449|ref|YP_003104109.1| succinate dehydrogenase, cytochrome b556 subunit [Actinosynnema
mirum DSM 43827]
gi|255924752|gb|ACU40263.1| succinate dehydrogenase, cytochrome b556 subunit [Actinosynnema
mirum DSM 43827]
Length = 140
Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 1/105 (0%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HRITG + + V V + + ++ + +
Sbjct: 18 TLYRGDLGMWSWVAHRITGVLTFFFLFVHVLDTALVRVSPNDYDAVIETYKTPLVNLFEV 77
Query: 75 LYTWAVIHHMLGGIRYLIWDV-SLCLDKKIATQMAKINIIASILT 118
AV++H L G+R ++ D + + A + I +++
Sbjct: 78 GLVGAVLYHALNGVRVMLVDFWAKGPKHQRAMLWTILGIWVAVMI 122
>gi|89056459|ref|YP_511910.1| succinate dehydrogenase subunit C [Jannaschia sp. CCS1]
gi|88866008|gb|ABD56885.1| succinate dehydrogenase subunit C [Jannaschia sp. CCS1]
Length = 114
Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 28/72 (38%)
Query: 18 RLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYT 77
R P I+HR++G + L P+ + + + V ++ F
Sbjct: 7 RAHPLWLAYILHRLSGLFLALFLPLHFWILAMAMTDPTRFDGFIAFTEIGVVKLAEFGLV 66
Query: 78 WAVIHHMLGGIR 89
+ + HM GG+R
Sbjct: 67 FLLAVHMFGGLR 78
>gi|116669692|ref|YP_830625.1| succinate dehydrogenase, cytochrome b subunit [Arthrobacter sp.
FB24]
gi|116609801|gb|ABK02525.1| succinate dehydrogenase subunit C [Arthrobacter sp. FB24]
Length = 126
Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 9/117 (7%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSV 68
P P +YR M+ + HRITG V++ V V + +++ +
Sbjct: 2 PTKPAGTLYRGREGMWSWVGHRITGVVIFFFLLVHVLDTSLVRVSPEAYTAVIGAYKNPL 61
Query: 69 FEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+ A++ H G+R + D KK A ++ + TVL++W+I
Sbjct: 62 MALGETGLVAAIVFHAFNGLRIIAVD----FWKKGAKYQRQM-----LWTVLVLWVI 109
>gi|149914205|ref|ZP_01902736.1| putative succinate dehydrogenase cytochrome b-556 subunit
[Roseobacter sp. AzwK-3b]
gi|149811724|gb|EDM71557.1| putative succinate dehydrogenase cytochrome b-556 subunit
[Roseobacter sp. AzwK-3b]
Length = 115
Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 25/70 (35%)
Query: 18 RLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYT 77
R P ++HR++G + L P+ + L + D ++ F
Sbjct: 8 RSHPLWLAFVLHRVSGLALALFLPLHFWVLAKALTAPEQLDAFLRLTDNPAVKLAEFGLV 67
Query: 78 WAVIHHMLGG 87
+ + H GG
Sbjct: 68 FLLAVHFFGG 77
>gi|21223234|ref|NP_629013.1| succinate dehydrogenase membrane subunit [Streptomyces coelicolor
A3(2)]
gi|289769556|ref|ZP_06528934.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
lividans TK24]
gi|7649588|emb|CAB89077.1| putative succinate dehydrogenase membrane subunit [Streptomyces
coelicolor A3(2)]
gi|289699755|gb|EFD67184.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
lividans TK24]
Length = 126
Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 30/75 (40%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG +++ V V + ++ + + +
Sbjct: 5 TLYRGREGMWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDTVVATYKTPIVALLEY 64
Query: 75 LYTWAVIHHMLGGIR 89
A++ H L G+R
Sbjct: 65 GLVAAILFHALNGLR 79
>gi|291437668|ref|ZP_06577058.1| succinate dehydrogenase membrane subunit [Streptomyces ghanaensis
ATCC 14672]
gi|291340563|gb|EFE67519.1| succinate dehydrogenase membrane subunit [Streptomyces ghanaensis
ATCC 14672]
Length = 126
Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 43/111 (38%), Gaps = 9/111 (8%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG +++ V V + + + + +
Sbjct: 5 TLYRGREGMWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDQVVATYKTPIVALLEY 64
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
A++ H L G+R + D K A ++ + TV+ VW++
Sbjct: 65 GLVAAILFHALNGLRVIAVD----FWIKGARYQKQM-----LWTVVAVWVV 106
>gi|257053896|ref|YP_003131729.1| succinate dehydrogenase, cytochrome b556 subunit [Halorhabdus
utahensis DSM 12940]
gi|256692659|gb|ACV12996.1| succinate dehydrogenase, cytochrome b556 subunit [Halorhabdus
utahensis DSM 12940]
Length = 129
Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL-SSLRCYMDGSVFEVCLFLYTWAVI 81
M+ ++H+ TG V+ + GE ++L+ ++ + +
Sbjct: 23 MWAWLLHKFTGWVLVGYLFTHIAVLSTATGGEELYNATLQGLEALAIVRLLEVGLLAVAV 82
Query: 82 HHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
H+L GIR L D+ L L+++ + A + I +I +
Sbjct: 83 FHILNGIRLLFIDLGLGLERQDQSFYASLVITGAIAVASV 122
>gi|332671369|ref|YP_004454377.1| succinate dehydrogenase, cytochrome b556 subunit [Cellulomonas
fimi ATCC 484]
gi|332340407|gb|AEE46990.1| succinate dehydrogenase, cytochrome b556 subunit [Cellulomonas
fimi ATCC 484]
Length = 131
Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 27/75 (36%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG ++ V V + + + V +
Sbjct: 12 TLYRGREGMWSWVAHRVTGVAIFFFLLVHVLDTSLVRVSPEAYNEVIATYKNPVMGLGEA 71
Query: 75 LYTWAVIHHMLGGIR 89
A++ H GIR
Sbjct: 72 GLVAAIVFHAFNGIR 86
>gi|94984996|ref|YP_604360.1| succinate dehydrogenase, cytochrome b subunit [Deinococcus
geothermalis DSM 11300]
gi|94555277|gb|ABF45191.1| succinate dehydrogenase subunit C [Deinococcus geothermalis DSM
11300]
Length = 118
Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+HR++G + + V GE ++ D +VF + L L V++H G
Sbjct: 13 LHRLSGLAILAYLLLHVVSISLFMFGERAYMAVHRTYDLAVFRIGLILIVAGVVYHAFNG 72
Query: 88 IRYLIWD-VSLCLDKKIATQMAKINIIASILTVL 120
+R ++ D + + QM + ++L L
Sbjct: 73 LRIIVMDFTGKGVAYQ--RQMWYAVLAITVLATL 104
>gi|254385208|ref|ZP_05000540.1| succinate dehydrogenase membrane subunit [Streptomyces sp. Mg1]
gi|194344085|gb|EDX25051.1| succinate dehydrogenase membrane subunit [Streptomyces sp. Mg1]
Length = 126
Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 29/75 (38%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG +++ V V + + + + +
Sbjct: 5 TLYRGREGMWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDDVVATYKNPIVALLEY 64
Query: 75 LYTWAVIHHMLGGIR 89
A++ H L G+R
Sbjct: 65 GLVAAILFHALNGLR 79
>gi|328884581|emb|CCA57820.1| Succinate dehydrogenase cytochrome b-556 subunit [Streptomyces
venezuelae ATCC 10712]
Length = 126
Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 29/75 (38%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG +++ V V + + + + +
Sbjct: 5 TLYRGREGMWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDEVVATYKTPIVALLEY 64
Query: 75 LYTWAVIHHMLGGIR 89
A++ H L G+R
Sbjct: 65 GLVAAILFHALNGLR 79
>gi|302544639|ref|ZP_07296981.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
hygroscopicus ATCC 53653]
gi|302462257|gb|EFL25350.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
himastatinicus ATCC 53653]
Length = 126
Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 29/75 (38%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG +++ V V + + + + +
Sbjct: 5 TLYRGREGMWSWVAHRVTGVLIFFFLFVHVLDTSLVRVSPEAYDDVVATYKTPIVNLMEY 64
Query: 75 LYTWAVIHHMLGGIR 89
A++ H L G+R
Sbjct: 65 GLVAAILFHALNGLR 79
>gi|118617052|ref|YP_905384.1| succinate dehydrogenase (cytochrome B-556 subunit) SdhC
[Mycobacterium ulcerans Agy99]
gi|118569162|gb|ABL03913.1| succinate dehydrogenase (cytochrome B-556 subunit) SdhC
[Mycobacterium ulcerans Agy99]
Length = 112
Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M+ ++HRITG+ ++ V V + +S+ + + F AV +
Sbjct: 1 MWSWVLHRITGAAIFFFLFVHVLDTALVRVRPQAYNSVIDTYKTPIVGLMEFGLVIAVSY 60
Query: 83 HMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
H L GIR ++ D + ++ + + L +L+
Sbjct: 61 HALNGIRIILIDF--WSEGPRYQRLMLAVVGVAWLLILV 97
>gi|312140769|ref|YP_004008105.1| succinate dehydrogenase cytochrome b subunit sdhc [Rhodococcus equi
103S]
gi|311890108|emb|CBH49426.1| succinate dehydrogenase cytochrome b subunit SdhC [Rhodococcus equi
103S]
Length = 140
Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 32/81 (39%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR P M+ ++HRITG + V V + T + + +
Sbjct: 22 SLYRGDPGMWSWVLHRITGVATFFFLFVHVLDTALVRVNPDTYDRVIETYKNPLVGLMEL 81
Query: 75 LYTWAVIHHMLGGIRYLIWDV 95
V++H L G+R ++ D
Sbjct: 82 ALVAMVLYHALNGLRVMLVDF 102
>gi|318061839|ref|ZP_07980560.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
sp. SA3_actG]
gi|318076433|ref|ZP_07983765.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
sp. SA3_actF]
gi|333026669|ref|ZP_08454733.1| putative succinate dehydrogenase, cytochrome b556 subunit
[Streptomyces sp. Tu6071]
gi|332746521|gb|EGJ76962.1| putative succinate dehydrogenase, cytochrome b556 subunit
[Streptomyces sp. Tu6071]
Length = 110
Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 23/61 (37%)
Query: 29 HRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGI 88
HR+TG +++ V V + + + + + A++ H L G+
Sbjct: 3 HRVTGVLIFFFLFVHVLDTALVRVSPEAYDDVVATYKNPIVALLEYGLVAAILFHALNGL 62
Query: 89 R 89
R
Sbjct: 63 R 63
>gi|291451705|ref|ZP_06591095.1| succinate dehydrogenase cytochrome b-556 subunit [Streptomyces
albus J1074]
gi|291354654|gb|EFE81556.1| succinate dehydrogenase cytochrome b-556 subunit [Streptomyces
albus J1074]
Length = 126
Score = 44.3 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 29/75 (38%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG +++ V V + + + + +
Sbjct: 5 TLYRGREGMWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDEVVATYKTPIVALLEY 64
Query: 75 LYTWAVIHHMLGGIR 89
AV+ H L G+R
Sbjct: 65 GLVAAVLFHALNGLR 79
>gi|320333907|ref|YP_004170618.1| succinate dehydrogenase, cytochrome b556 subunit [Deinococcus
maricopensis DSM 21211]
gi|319755196|gb|ADV66953.1| succinate dehydrogenase, cytochrome b556 subunit [Deinococcus
maricopensis DSM 21211]
Length = 118
Score = 44.3 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+HR++G + L + + GE ++ D +F V L T +++H L G
Sbjct: 13 LHRLSGLAILLYLLLHIVSISLHVFGEGAYMAVHEMYDFWLFRVGLIALTGGILYHSLNG 72
Query: 88 IRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+R ++ D + QM ++ S++
Sbjct: 73 LRIVVMDFA-GAGVAYQRQMWYAVLVLSLIGTA 104
>gi|297192539|ref|ZP_06909937.1| succinate dehydrogenase cytochrome b-556 subunit [Streptomyces
pristinaespiralis ATCC 25486]
gi|297151391|gb|EDY61989.2| succinate dehydrogenase cytochrome b-556 subunit [Streptomyces
pristinaespiralis ATCC 25486]
Length = 126
Score = 44.3 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 29/75 (38%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG +++ V V + + + + +
Sbjct: 5 TLYRGREGMWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDEVVATYKTPIVALLEY 64
Query: 75 LYTWAVIHHMLGGIR 89
A++ H L G+R
Sbjct: 65 GLVAAILFHALNGLR 79
>gi|46199394|ref|YP_005061.1| succinate dehydrogenase membrane anchor subunit [Thermus
thermophilus HB27]
gi|55981425|ref|YP_144722.1| succinate dehydrogenase, cytochrome subunit [Thermus thermophilus
HB8]
gi|46197019|gb|AAS81434.1| succinate dehydrogenase membrane anchor subunit [Thermus
thermophilus HB27]
gi|55772838|dbj|BAD71279.1| succinate dehydrogenase, cytochrome subunit [Thermus thermophilus
HB8]
Length = 121
Score = 44.3 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 30/68 (44%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+HRI+G + + + V G ++ + VF++ L + V++H G
Sbjct: 13 LHRISGIGILVFLVLHVLNIASAMWGPEVSNAFMKFYHQPVFQLGLLVLIAGVLYHGFNG 72
Query: 88 IRYLIWDV 95
+R ++ D
Sbjct: 73 LRIILMDF 80
>gi|320008969|gb|ADW03819.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
flavogriseus ATCC 33331]
Length = 126
Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 29/75 (38%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG +++ V V + + + + +
Sbjct: 5 TLYRGREGMWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDDVVATYKTPLVALLEY 64
Query: 75 LYTWAVIHHMLGGIR 89
A++ H L G+R
Sbjct: 65 GLVAAILFHALNGLR 79
>gi|50954262|ref|YP_061550.1| succinate dehydrogenase, cytochrome b-556 subunit [Leifsonia xyli
subsp. xyli str. CTCB07]
gi|50950744|gb|AAT88445.1| succinate dehydrogenase, cytochrome b-556 subunit [Leifsonia xyli
subsp. xyli str. CTCB07]
Length = 112
Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M+ ++HRITG ++ V + I +++ + + A++
Sbjct: 1 MWSWVLHRITGVAIFFFLLVHILDTSLIRVSPEAYNAVIGTYKNPIMGLGEIALVAAIVF 60
Query: 83 HMLGGIRYLIWDV-SLCLDKKIATQMAKINIIASILTVLI 121
H L G+R ++ D S + + A I + ++ +
Sbjct: 61 HALNGLRIILIDFWSKGVTYQKAMFWTVIALWVILMAGFV 100
>gi|325675591|ref|ZP_08155275.1| succinate dehydrogenase cytochrome b558 subunit [Rhodococcus equi
ATCC 33707]
gi|325553562|gb|EGD23240.1| succinate dehydrogenase cytochrome b558 subunit [Rhodococcus equi
ATCC 33707]
Length = 134
Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 32/81 (39%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR P M+ ++HRITG + V V + T + + +
Sbjct: 16 SLYRGDPGMWSWVLHRITGVATFFFLFVHVLDTALVRVNPDTYDRVIETYKNPLVGLMEL 75
Query: 75 LYTWAVIHHMLGGIRYLIWDV 95
V++H L G+R ++ D
Sbjct: 76 ALVAMVLYHALNGLRVMLVDF 96
>gi|111220651|ref|YP_711445.1| succinate dehydrogenase membrane subunit [Frankia alni ACN14a]
gi|111148183|emb|CAJ59852.1| succinate dehydrogenase membrane subunit [Frankia alni ACN14a]
Length = 116
Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 29/73 (39%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M+ + HRITG +V+ V + + + + + + AV+
Sbjct: 1 MWSWVAHRITGVLVFFFLFAHVLDTALVRVSPSSYNEVIEVYKSPIVNLLEVGLVAAVLF 60
Query: 83 HMLGGIRYLIWDV 95
H L GIR ++ D
Sbjct: 61 HALNGIRIILIDF 73
>gi|282860945|ref|ZP_06270011.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
sp. ACTE]
gi|282564681|gb|EFB70217.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
sp. ACTE]
Length = 126
Score = 43.9 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 29/75 (38%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG +++ V V + + + + +
Sbjct: 5 TLYRGREGMWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDEVVATYKTPLVALLEY 64
Query: 75 LYTWAVIHHMLGGIR 89
A++ H L G+R
Sbjct: 65 GLVAAILFHALNGLR 79
>gi|182436480|ref|YP_001824199.1| putative succinate dehydrogenase membrane subunit [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326777101|ref|ZP_08236366.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
cf. griseus XylebKG-1]
gi|178464996|dbj|BAG19516.1| putative succinate dehydrogenase membrane subunit [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326657434|gb|EGE42280.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
cf. griseus XylebKG-1]
Length = 126
Score = 43.9 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 29/75 (38%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG +++ V V + + + + +
Sbjct: 5 TLYRGREGMWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDEVVATYKTPIVALLEY 64
Query: 75 LYTWAVIHHMLGGIR 89
A++ H L G+R
Sbjct: 65 GLVAAILFHALNGLR 79
>gi|297622603|ref|YP_003704037.1| succinate dehydrogenase, cytochrome b556 subunit [Truepera
radiovictrix DSM 17093]
gi|297163783|gb|ADI13494.1| succinate dehydrogenase, cytochrome b556 subunit [Truepera
radiovictrix DSM 17093]
Length = 119
Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 40/99 (40%)
Query: 27 IVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLG 86
I+HR++G V+ + V + G + + VF + L L V++H
Sbjct: 12 ILHRLSGLAVFFYLMIHVVNISLASFGPQVSGPVLSFFHQGVFRIGLVLVMAGVVYHAFN 71
Query: 87 GIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
G+R ++ D + K + + + ++W++
Sbjct: 72 GLRIILMDFTTWGTKYHRQLWYGVLAATVAIGIPVLWVV 110
>gi|269795863|ref|YP_003315318.1| succinate dehydrogenase subunit C [Sanguibacter keddieii DSM 10542]
gi|269098048|gb|ACZ22484.1| succinate dehydrogenase subunit C [Sanguibacter keddieii DSM 10542]
Length = 126
Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 1/104 (0%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG +++ V V + +++ + +
Sbjct: 8 TLYRGREGMWSWVAHRVTGVLIFFFLLVHVLDTALVRVSPEAYNAVIGTYQTPIMGLGEA 67
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
A++ H GIR ++ D + M + I ++T
Sbjct: 68 GLVAAIVFHAFNGIRIILVDF-WAKGPRYQRVMLWVVIGLFVVT 110
>gi|302558849|ref|ZP_07311191.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
griseoflavus Tu4000]
gi|302476467|gb|EFL39560.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
griseoflavus Tu4000]
Length = 126
Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 30/75 (40%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG +++ V V + ++ + + +
Sbjct: 5 TLYRGREGMWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDNVVATYKTPIVALLEY 64
Query: 75 LYTWAVIHHMLGGIR 89
A++ H L G+R
Sbjct: 65 GLVAAILFHALNGLR 79
>gi|257388123|ref|YP_003177896.1| succinate dehydrogenase, cytochrome b556 subunit [Halomicrobium
mukohataei DSM 12286]
gi|257170430|gb|ACV48189.1| succinate dehydrogenase, cytochrome b556 subunit [Halomicrobium
mukohataei DSM 12286]
Length = 131
Score = 43.9 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLS-SLRCYMDGSVFEVCLFLYTWAVI 81
M+ I H+ TG V+ + GE + +L+ V +
Sbjct: 23 MWAWIFHKFTGWVLVGYLFTHIAVLSTAIQGEALYNGTLQGLEALLVVRFLEVGLLAVAV 82
Query: 82 HHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
H+L G+R L D+ + L+ + + A + + +I+ I
Sbjct: 83 FHILNGLRLLFVDLGIGLEAQDKSFYASMVLTGAIVVASI 122
>gi|302553710|ref|ZP_07306052.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
viridochromogenes DSM 40736]
gi|302471328|gb|EFL34421.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
viridochromogenes DSM 40736]
Length = 126
Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 43/111 (38%), Gaps = 9/111 (8%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG +++ V V + + + + +
Sbjct: 5 TLYRGREGMWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDDVVATYKTPIVALLEY 64
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
A++ H L G+R + D K A ++ + TV+ VW++
Sbjct: 65 GLVAAILFHALNGLRVIAVD----FWIKGARYQKQM-----LWTVVAVWVV 106
>gi|291447202|ref|ZP_06586592.1| succinate dehydrogenase membrane subunit [Streptomyces
roseosporus NRRL 15998]
gi|291350149|gb|EFE77053.1| succinate dehydrogenase membrane subunit [Streptomyces
roseosporus NRRL 15998]
Length = 126
Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 29/75 (38%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG +++ V V + + + + +
Sbjct: 5 TLYRGREGMWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDDVVATYKTPIVALLEY 64
Query: 75 LYTWAVIHHMLGGIR 89
A++ H L G+R
Sbjct: 65 GLVAAILFHALNGLR 79
>gi|284164221|ref|YP_003402500.1| succinate dehydrogenase, cytochrome b556 subunit [Haloterrigena
turkmenica DSM 5511]
gi|284013876|gb|ADB59827.1| succinate dehydrogenase, cytochrome b556 subunit [Haloterrigena
turkmenica DSM 5511]
Length = 131
Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 14/100 (14%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL-SSLRCYMDGSVFEVCLFLYTWAVI 81
M+ I H+ TG ++ + G +++ + V +
Sbjct: 23 MWAWIFHKFTGWMLIGYLFTHIAVLSSSLTGPEAYTNTIGGLESLFIVRVLEVGLLAVAV 82
Query: 82 HHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
H+L G+R L+ D+ + L+ + + +++ + + +
Sbjct: 83 FHILNGLRLLMVDLGVGLEAQ--DKSFYASLVLTAIITVA 120
>gi|297565864|ref|YP_003684836.1| succinate dehydrogenase, cytochrome b556 subunit [Meiothermus
silvanus DSM 9946]
gi|296850313|gb|ADH63328.1| succinate dehydrogenase, cytochrome b556 subunit [Meiothermus
silvanus DSM 9946]
Length = 123
Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+HR++G + L + G + L + +F+V L L T A ++H G
Sbjct: 13 LHRLSGIALMLWLLLHTLNISSAMWGPEVSNRLMAFFHIPIFQVGLLLVTAAALYHAFNG 72
Query: 88 IRYLIWD-VSLCLDKKIATQMAKINIIAS 115
+R ++ D + + + + +
Sbjct: 73 LRIILMDFTGWGVKYQKELWYGVLFLCIA 101
>gi|262201721|ref|YP_003272929.1| succinate dehydrogenase, cytochrome b556 subunit [Gordonia
bronchialis DSM 43247]
gi|262085068|gb|ACY21036.1| succinate dehydrogenase, cytochrome b556 subunit [Gordonia
bronchialis DSM 43247]
Length = 139
Score = 43.5 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 1/116 (0%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR P M+ ++HRITG ++ V V I + + + +
Sbjct: 17 SLYRGNPGMWSWVLHRITGVTIFFFLFVHVLDTAVIRVDPNQYDEIIATYKTPIVGLMEI 76
Query: 75 LYTWAVIHHMLGGIRYLIWDV-SLCLDKKIATQMAKINIIASILTVLIVWIIKDIV 129
V+ H G+R ++ D S + A + + + V +++ ++
Sbjct: 77 GLVACVLFHAFNGLRIILIDFWSKGPKYQRQMLWAILTLFVIVFGAATVRLLQILI 132
>gi|163854706|ref|YP_001629004.1| succinate dehydrogenase cytochrome b-556 subunit [Bordetella petrii
DSM 12804]
gi|163258434|emb|CAP40733.1| succinate dehydrogenase cytochrome b-556 subunit [Bordetella
petrii]
Length = 117
Score = 43.5 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 4/112 (3%)
Query: 18 RLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYT 77
R + HRI+G ++ PV + GE L + + VF+ +
Sbjct: 9 RTHASWLAFAAHRISGLLLLAFLPVHFWTLGLALQGEAALDGALRWYEAPVFKFGEWALV 68
Query: 78 WAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDIV 129
+ H+ GG+R L+W + + I + + + + +++
Sbjct: 69 LCLAVHLAGGLR-LLW---IEFAPWGGLRRGWIAAGTAASLAVSLLFVANML 116
>gi|15805978|ref|NP_294678.1| succinate dehydrogenase, cytochrome subunit [Deinococcus
radiodurans R1]
gi|6458675|gb|AAF10527.1|AE001947_10 succinate dehydrogenase, cytochrome subunit [Deinococcus
radiodurans R1]
Length = 118
Score = 43.5 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+HR++G + L + VF + GE + D +F V L V++H G
Sbjct: 13 LHRLSGLAILLYLMLHVFSIGSVILGEEFYMRIHHVYDLGIFRVGLIAVVAGVVYHAFNG 72
Query: 88 IRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
+R ++ D + QM + + L L
Sbjct: 73 LRIIVMDFA-GAGVAYQRQMWYGVLAITALATL 104
>gi|302536398|ref|ZP_07288740.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
sp. C]
gi|302445293|gb|EFL17109.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
sp. C]
Length = 126
Score = 43.5 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 29/75 (38%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG +++ V V + + + + +
Sbjct: 5 TLYRGREGMWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDDVVATYKTPIVALLEY 64
Query: 75 LYTWAVIHHMLGGIR 89
A++ H L G+R
Sbjct: 65 GLVAAILFHALNGLR 79
>gi|269955790|ref|YP_003325579.1| succinate dehydrogenase, cytochrome b556 subunit [Xylanimonas
cellulosilytica DSM 15894]
gi|269304471|gb|ACZ30021.1| succinate dehydrogenase, cytochrome b556 subunit [Xylanimonas
cellulosilytica DSM 15894]
Length = 126
Score = 43.5 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 31/81 (38%)
Query: 9 PLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSV 68
P +P +YR M+ + HR+TG +++ V V + + + +
Sbjct: 2 PEAPGGTLYRGREGMWSWVAHRVTGVLIFFFLLVHVLDTSLVRVSPEAYNEIIGTYRHWI 61
Query: 69 FEVCLFLYTWAVIHHMLGGIR 89
+ AV+ H G+R
Sbjct: 62 MGLGEAGLVAAVVFHAFNGVR 82
>gi|326442990|ref|ZP_08217724.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
clavuligerus ATCC 27064]
Length = 110
Score = 43.5 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 12/61 (19%), Positives = 23/61 (37%)
Query: 29 HRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGI 88
HR+TG +++ V V + + + + + AV+ H L G+
Sbjct: 3 HRVTGVLIFFFLFVHVLDTALVRVSPEDYDKVVAVYKTPIVALLEYGLVAAVLFHALNGL 62
Query: 89 R 89
R
Sbjct: 63 R 63
>gi|152967895|ref|YP_001363679.1| succinate dehydrogenase cytochrome b556 subunit [Kineococcus
radiotolerans SRS30216]
gi|151362412|gb|ABS05415.1| Succinate dehydrogenase cytochrome b556 subunit [Kineococcus
radiotolerans SRS30216]
Length = 139
Score = 43.1 bits (101), Expect = 0.013, Method: Composition-based stats.
Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 1/109 (0%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ ++HRI+G +++ V V + + + V +
Sbjct: 22 TLYRGREGMWSWVMHRISGVLIFFFLFVHVLDTATVRVSPEVYNGVIAQYKNPVMGLGEA 81
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQ-MAKINIIASILTVLIV 122
AV+ H L G+R ++ D K + + +++ +V
Sbjct: 82 GLVGAVVFHALNGVRIILVDFWSGGTKHQRKLFWGVVALWTALMVPFLV 130
>gi|319949456|ref|ZP_08023516.1| succinate dehydrogenase, cytochrome b subunit [Dietzia cinnamea
P4]
gi|319436882|gb|EFV91942.1| succinate dehydrogenase, cytochrome b subunit [Dietzia cinnamea
P4]
Length = 135
Score = 43.1 bits (101), Expect = 0.013, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 31/76 (40%)
Query: 14 LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCL 73
L+ Y+ P M+ + HRI+G ++ V V + + +++ + +
Sbjct: 16 LKFYKGDPGMWSWVAHRISGVAIFFFLFVHVLDTSLVTVSPESYNAVIDTYKTPIVGLME 75
Query: 74 FLYTWAVIHHMLGGIR 89
V+ H L G+R
Sbjct: 76 IGLVALVLFHALNGLR 91
>gi|297201915|ref|ZP_06919312.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
sviceus ATCC 29083]
gi|197712711|gb|EDY56745.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
sviceus ATCC 29083]
Length = 126
Score = 43.1 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 28/75 (37%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG +++ V V + + + +
Sbjct: 5 TLYRGREGMWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEDYDKVVATYKTPLVACLEY 64
Query: 75 LYTWAVIHHMLGGIR 89
A++ H L G+R
Sbjct: 65 GLVAAILFHALNGLR 79
>gi|320450965|ref|YP_004203061.1| succinate dehydrogenase, cytochrome b556 subunit [Thermus
scotoductus SA-01]
gi|320151134|gb|ADW22512.1| succinate dehydrogenase, cytochrome b556 subunit [Thermus
scotoductus SA-01]
Length = 121
Score = 42.7 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 31/68 (45%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+HRI+G + + + V G ++L + VF++ L L V++H G
Sbjct: 13 LHRISGLGILVFLMLHVANIASAMWGPEVSNALMKFYHQPVFQIGLLLLIAGVLYHGFNG 72
Query: 88 IRYLIWDV 95
+R ++ D
Sbjct: 73 LRIILMDF 80
>gi|218295724|ref|ZP_03496520.1| succinate dehydrogenase, cytochrome b556 subunit [Thermus
aquaticus Y51MC23]
gi|218243883|gb|EED10410.1| succinate dehydrogenase, cytochrome b556 subunit [Thermus
aquaticus Y51MC23]
Length = 121
Score = 42.7 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+HRI+G + + + V G ++L + VF+V L L V++H G
Sbjct: 13 LHRISGLGILVFLMLHVANISSAMWGPEVSNALMKFYHQPVFQVGLLLLIAGVLYHGFNG 72
Query: 88 IRYLIWDV 95
+R ++ D
Sbjct: 73 LRIILMDF 80
>gi|15610452|ref|NP_217833.1| succinate dehydrogenase cytochrome B-556 subunit [Mycobacterium
tuberculosis H37Rv]
gi|15842908|ref|NP_337945.1| succinate dehydrogenase, cytochrome b-556 subunit [Mycobacterium
tuberculosis CDC1551]
gi|31794497|ref|NP_856990.1| succinate dehydrogenase cytochrome B-556 subunit [Mycobacterium
bovis AF2122/97]
gi|121639240|ref|YP_979464.1| putative succinate dehydrogenase (cytochrome B-556 subunit) SDHC
[Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|148663180|ref|YP_001284703.1| succinate dehydrogenase cytochrome B-556 subunit SdhC
[Mycobacterium tuberculosis H37Ra]
gi|167968951|ref|ZP_02551228.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis H37Ra]
gi|215405331|ref|ZP_03417512.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis 02_1987]
gi|215413196|ref|ZP_03421897.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis 94_M4241A]
gi|215447624|ref|ZP_03434376.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis T85]
gi|218755100|ref|ZP_03533896.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis GM 1503]
gi|224991699|ref|YP_002646388.1| putative succinate dehydrogenase [Mycobacterium bovis BCG str.
Tokyo 172]
gi|224991718|ref|YP_002646407.1| putative succinate dehydrogenase [Mycobacterium bovis BCG str.
Tokyo 172]
gi|224991737|ref|YP_002646426.1| putative succinate dehydrogenase [Mycobacterium bovis BCG str.
Tokyo 172]
gi|254552420|ref|ZP_05142867.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
gi|260188366|ref|ZP_05765840.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis CPHL_A]
gi|260206670|ref|ZP_05774161.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis K85]
gi|289449007|ref|ZP_06438751.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis CPHL_A]
gi|289576038|ref|ZP_06456265.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis K85]
gi|289763506|ref|ZP_06522884.1| succinate dehydrogenase (cytochrome B-556 subunit) sdhC
[Mycobacterium tuberculosis GM 1503]
gi|294993741|ref|ZP_06799432.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis 210]
gi|297635972|ref|ZP_06953752.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis KZN 4207]
gi|297732969|ref|ZP_06962087.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis KZN R506]
gi|313660301|ref|ZP_07817181.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis KZN V2475]
gi|2894226|emb|CAA17088.1| PROBABLE SUCCINATE DEHYDROGENASE (CYTOCHROME B-556 SUBUNIT) SDHC
(SUCCINIC DEHYDROGENASE) (FUMARATE REDUCTASE) (FUMARATE
DEHYDROGENASE) (FUMARIC HYDROGENASE) [Mycobacterium
tuberculosis H37Rv]
gi|13883242|gb|AAK47759.1| succinate dehydrogenase, cytochrome b-556 subunit [Mycobacterium
tuberculosis CDC1551]
gi|31620093|emb|CAD95437.1| PROBABLE SUCCINATE DEHYDROGENASE (CYTOCHROME B-556 SUBUNIT) SDHC
(SUCCINIC DEHYDROGENASE) (FUMARATE REDUCTASE) (FUMARATE
DEHYDROGENASE) (FUMARIC HYDROGENASE) [Mycobacterium
bovis AF2122/97]
gi|121494888|emb|CAL73371.1| Probable succinate dehydrogenase (cytochrome B-556 subunit) SDHC
[Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|148507332|gb|ABQ75141.1| succinate dehydrogenase cytochrome B-556 subunit SdhC
[Mycobacterium tuberculosis H37Ra]
gi|224774814|dbj|BAH27620.1| putative succinate dehydrogenase [Mycobacterium bovis BCG str.
Tokyo 172]
gi|224774833|dbj|BAH27639.1| putative succinate dehydrogenase [Mycobacterium bovis BCG str.
Tokyo 172]
gi|224774852|dbj|BAH27658.1| putative succinate dehydrogenase [Mycobacterium bovis BCG str.
Tokyo 172]
gi|289421965|gb|EFD19166.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis CPHL_A]
gi|289540469|gb|EFD45047.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis K85]
gi|289711012|gb|EFD75028.1| succinate dehydrogenase (cytochrome B-556 subunit) sdhC
[Mycobacterium tuberculosis GM 1503]
gi|326902455|gb|EGE49388.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis W-148]
Length = 112
Score = 42.7 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M+ + HRI+G+ ++ V V + T +++ + + + AV+
Sbjct: 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
Query: 83 HMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
H L GIR ++ D + Q + II S+ +L+V
Sbjct: 61 HALNGIRVILID---FWSEGPRYQRLMLWIIGSVFLLLMV 97
>gi|29829938|ref|NP_824572.1| succinate dehydrogenase cytochrome b-556 subunit [Streptomyces
avermitilis MA-4680]
gi|29607048|dbj|BAC71107.1| putative succinate dehydrogenase cytochrome b-556 subunit
(complex II) [Streptomyces avermitilis MA-4680]
Length = 126
Score = 42.7 bits (100), Expect = 0.017, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 29/75 (38%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG +++ V V + + + V +
Sbjct: 5 TLYRGREGMWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEDYDKVVSTYKTPIVAVLEY 64
Query: 75 LYTWAVIHHMLGGIR 89
A++ H L G+R
Sbjct: 65 GLVAAILFHALNGLR 79
>gi|297158116|gb|ADI07828.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
bingchenggensis BCW-1]
Length = 115
Score = 42.7 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 1/96 (1%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M+ + HR+TG +++ V V + + + V + A++
Sbjct: 1 MWSWVAHRVTGVLIFFFLFVHVLDTSLVRVSPEAYDDVVATYKNPIVNVMEYGLVAAILF 60
Query: 83 HMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
H L G+R + D K QM + ++
Sbjct: 61 HALNGLRVIAVDF-WSKGPKYQKQMLWSVVGIWVVL 95
>gi|215428803|ref|ZP_03426722.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis T92]
gi|215432281|ref|ZP_03430200.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis EAS054]
gi|219559379|ref|ZP_03538455.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis T17]
gi|260202480|ref|ZP_05769971.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis T46]
gi|289444900|ref|ZP_06434644.1| succinate dehydrogenase, cytochrome b556 subunit [Mycobacterium
tuberculosis T46]
gi|289571545|ref|ZP_06451772.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis T17]
gi|289752014|ref|ZP_06511392.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis T92]
gi|289755440|ref|ZP_06514818.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis EAS054]
gi|289417819|gb|EFD15059.1| succinate dehydrogenase, cytochrome b556 subunit [Mycobacterium
tuberculosis T46]
gi|289545299|gb|EFD48947.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis T17]
gi|289692601|gb|EFD60030.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis T92]
gi|289696027|gb|EFD63456.1| succinate dehydrogenase cytochrome B-556 subunit sdhC
[Mycobacterium tuberculosis EAS054]
Length = 112
Score = 42.7 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M+ + HRI+G+ ++ V V + T +++ + + + AV+
Sbjct: 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGIVAAVLF 60
Query: 83 HMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
H L GIR ++ D + Q + II S+ +L+V
Sbjct: 61 HALNGIRVILID---FWSEGPRYQRLMLWIIGSVFLLLMV 97
>gi|320162159|ref|YP_004175384.1| putative succinate dehydrogenase cytochrome b subunit [Anaerolinea
thermophila UNI-1]
gi|319996013|dbj|BAJ64784.1| putative succinate dehydrogenase cytochrome b subunit [Anaerolinea
thermophila UNI-1]
Length = 130
Score = 42.7 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 14/96 (14%), Positives = 36/96 (37%)
Query: 27 IVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLG 86
I++RI+ + + + + +A G + + + L A ++H L
Sbjct: 29 IINRISAIGLTVYLYLHLVMLGKLAQGPESFDAFIATAKQPLILFGELLVIIAGLYHGLN 88
Query: 87 GIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
GIR + + + + A + + + A+ +
Sbjct: 89 GIRIALTSFGVAVRYQRALLIGVVLLTAAGSLFFAI 124
>gi|239929335|ref|ZP_04686288.1| succinate dehydrogenase membrane subunit [Streptomyces ghanaensis
ATCC 14672]
Length = 110
Score = 42.3 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 23/61 (37%)
Query: 29 HRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGI 88
HR+TG +++ V V + + + + + A++ H L G+
Sbjct: 3 HRVTGVLIFFFLFVHVLDTALVRVSPEAYDQVVATYKTPIVALLEYGLVAAILFHALNGL 62
Query: 89 R 89
R
Sbjct: 63 R 63
>gi|256785663|ref|ZP_05524094.1| succinate dehydrogenase membrane subunit [Streptomyces lividans
TK24]
Length = 110
Score = 42.3 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 24/61 (39%)
Query: 29 HRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGI 88
HR+TG +++ V V + ++ + + + A++ H L G+
Sbjct: 3 HRVTGVLIFFFLFVHVLDTALVRVSPEAYDTVVATYKTPIVALLEYGLVAAILFHALNGL 62
Query: 89 R 89
R
Sbjct: 63 R 63
>gi|148272152|ref|YP_001221713.1| succinate dehydrogenase, cytochrome b subunit [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
gi|147830082|emb|CAN01011.1| succinate dehydrogenase, cytochrome b subunit [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
Length = 144
Score = 42.3 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 1/104 (0%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ ++HRITG ++ V V I +++ + +
Sbjct: 23 TLYRGREGMWSWVLHRITGVSIFFFLLVHVLDTSLIRVSPEAYNAVIGTYKNPIMGIGEV 82
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
A+ H L G+R ++ D K M + I ++
Sbjct: 83 ALVGAIGFHALNGLRIILIDF-WRFGAKHQRLMFYVVIGLWVVL 125
>gi|326381948|ref|ZP_08203641.1| succinate dehydrogenase, cytochrome b556 subunit [Gordonia
neofelifaecis NRRL B-59395]
gi|326199374|gb|EGD56555.1| succinate dehydrogenase, cytochrome b556 subunit [Gordonia
neofelifaecis NRRL B-59395]
Length = 112
Score = 42.3 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M+ ++HRITG ++ V V I E++ + + + + + V++
Sbjct: 1 MWSWVLHRITGVSIFFFLFVHVLDTAVIRVNENSYTEIIETYKTPLIGLMEIGLVFCVLY 60
Query: 83 HMLGGIRYLIWDV-SLCLDKKIATQMAKINIIASILTVLIV 122
H L G+R ++ D + + + A + V
Sbjct: 61 HALNGLRVILVDFWGKGAKYQRQMLWTILTVFAIVFIAAAV 101
>gi|239979847|ref|ZP_04702371.1| putative succinate dehydrogenase membrane subunit [Streptomyces
albus J1074]
Length = 110
Score = 42.3 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 12/61 (19%), Positives = 23/61 (37%)
Query: 29 HRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGI 88
HR+TG +++ V V + + + + + AV+ H L G+
Sbjct: 3 HRVTGVLIFFFLFVHVLDTALVRVSPEAYDEVVATYKTPIVALLEYGLVAAVLFHALNGL 62
Query: 89 R 89
R
Sbjct: 63 R 63
>gi|294631046|ref|ZP_06709606.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
sp. e14]
gi|292834379|gb|EFF92728.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
sp. e14]
Length = 126
Score = 42.3 bits (99), Expect = 0.022, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 28/75 (37%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG +++ V V + + + +
Sbjct: 5 TLYRGREGMWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEDYDKVVSTYKTPIVACLEY 64
Query: 75 LYTWAVIHHMLGGIR 89
A++ H L G+R
Sbjct: 65 GLVAAILFHALNGLR 79
>gi|238024242|ref|YP_002908474.1| succinate dehydrogenase, cytochrome b subunit [Burkholderia glumae
BGR1]
gi|237878907|gb|ACR31239.1| Succinate dehydrogenase, cytochrome b subunit [Burkholderia glumae
BGR1]
Length = 122
Score = 42.3 bits (99), Expect = 0.023, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
RIT ++ + T +++ WFF + + ++ F+ A+ +H GIR
Sbjct: 27 RITAVIMAVYTVILLAWFFSARDF--SYDGWASIFSTQWMKLATFVTLLALFYHAWVGIR 84
Query: 90 YLIWDVSLCLDKKIATQMAKINIIAS 115
+ D + ++ Q I + +
Sbjct: 85 DIWMDYVKPVGVRLVLQSLTIVWLLA 110
>gi|134096481|ref|YP_001101556.1| putative succinate dehydrogenase/fumarate reductase cytochrome
b-556 subunit [Herminiimonas arsenicoxydans]
gi|133740384|emb|CAL63435.1| Putative fumarate reductase [Herminiimonas arsenicoxydans]
Length = 118
Score = 42.0 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 44/109 (40%)
Query: 18 RLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYT 77
R P + +VHR++G V+ L P+ GE L++ D +F+ +
Sbjct: 10 RSHPAYWAFLVHRLSGLVLALFLPLHFLALSQAIRGEAELNAFIRIADQPLFKFGEWGLV 69
Query: 78 WAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
+ HM+GG+R L+ + + A + + + + +I
Sbjct: 70 VLLSLHMMGGVRLLLIEFRDWSGTRNNWIAAALGVGLATGLAFALALIS 118
>gi|226356176|ref|YP_002785916.1| succinate dehydrogenase, cytochrome subunit [Deinococcus deserti
VCD115]
gi|226318166|gb|ACO46162.1| putative Succinate dehydrogenase, cytochrome subunit [Deinococcus
deserti VCD115]
Length = 118
Score = 42.0 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+HR++G + + VF GE ++ D VF V L V++H G
Sbjct: 13 LHRLSGLAILAYLLLHVFSIGSHIFGERFYMAIHHTYDLPVFRVGLIFIVAGVVYHAFNG 72
Query: 88 IRYLIWD-VSLCLDKKIATQMAKINIIASILTVL 120
+R ++ D + + QM + ++L
Sbjct: 73 LRIIVMDFTGAGVAYQ--RQMFYAVLAITLLATA 104
>gi|257054607|ref|YP_003132439.1| succinate dehydrogenase subunit C [Saccharomonospora viridis DSM
43017]
gi|256584479|gb|ACU95612.1| succinate dehydrogenase subunit C [Saccharomonospora viridis DSM
43017]
Length = 116
Score = 42.0 bits (98), Expect = 0.029, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M+ ++HRITG + + V V + +T ++ + + AV++
Sbjct: 1 MWSWVLHRITGVLTFFFLFVHVLDTALVRVSPNTYDAIIETYKNPIVNLMEVGLVGAVLY 60
Query: 83 HMLGGIR 89
H L GIR
Sbjct: 61 HALNGIR 67
>gi|290957987|ref|YP_003489169.1| succinate dehydrogenase membrane subunit [Streptomyces scabiei
87.22]
gi|260647513|emb|CBG70618.1| putative succinate dehydrogenase membrane subunit [Streptomyces
scabiei 87.22]
Length = 110
Score = 42.0 bits (98), Expect = 0.029, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 23/61 (37%)
Query: 29 HRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGI 88
HR+TG +++ V V + + + + + A++ H L G+
Sbjct: 3 HRVTGVLIFFFLFVHVLDTALVRVSPDAYDKVVATYKTPIVALLEYGLVAAILFHALNGL 62
Query: 89 R 89
R
Sbjct: 63 R 63
>gi|325962573|ref|YP_004240479.1| succinate dehydrogenase subunit C [Arthrobacter phenanthrenivorans
Sphe3]
gi|323468660|gb|ADX72345.1| succinate dehydrogenase subunit C [Arthrobacter phenanthrenivorans
Sphe3]
Length = 111
Score = 42.0 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 1/94 (1%)
Query: 29 HRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGI 88
HRITG V++ V V + +++ + + A++ H G+
Sbjct: 7 HRITGVVIFFFLLVHVLDTSLVRVSPEAYTAVIGAYKNPLMALGETGLVAAIVFHAFNGL 66
Query: 89 RYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
R + D K QM + ++T++
Sbjct: 67 RIIAVDFWK-KGAKYQRQMLWAVLGLWLVTMVAF 99
>gi|269925903|ref|YP_003322526.1| succinate dehydrogenase, cytochrome b556 subunit [Thermobaculum
terrenum ATCC BAA-798]
gi|269789563|gb|ACZ41704.1| succinate dehydrogenase, cytochrome b556 subunit [Thermobaculum
terrenum ATCC BAA-798]
Length = 119
Score = 42.0 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 4/110 (3%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGS-VFEVCLFL 75
YR M+ I HRI+G V L + + I G ++ + F+
Sbjct: 2 YRGREGMWAWIFHRISGVGVLLFLFIHIVDTALIGWGPKYYDAITRIYHEWAIMRFLQFV 61
Query: 76 YTWAVIHHMLGGIRYLIWDV---SLCLDKKIATQMAKINIIASILTVLIV 122
V++H G+R +I D K++ + I+ I T +++
Sbjct: 62 LIAGVLYHAFNGVRIIIIDFWPSGYKYQKQMFYAALGLTIVCLIPTGILL 111
>gi|260907394|ref|ZP_05915716.1| succinate dehydrogenase cytochrome b subunit [Brevibacterium linens
BL2]
Length = 110
Score = 42.0 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 1/100 (1%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M+ + HR+TG ++ V V + +++ + A+
Sbjct: 1 MWSWVAHRVTGVGIFFFLLVHVLDTALVRVSPEAYNAVIGTYKTPFMAIGEIALVAAIAF 60
Query: 83 HMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
H G+R ++ D S K ++ I+ ++ ++
Sbjct: 61 HAFNGLRVILVDFSKS-GPKNQKKLFWGVIVVWLIIMIAF 99
>gi|296394553|ref|YP_003659437.1| succinate dehydrogenase cytochrome b556 subunit [Segniliparus
rotundus DSM 44985]
gi|296181700|gb|ADG98606.1| succinate dehydrogenase, cytochrome b556 subunit [Segniliparus
rotundus DSM 44985]
Length = 126
Score = 42.0 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR P M+ ++HR TG ++ V V I + + + VF V
Sbjct: 7 SLYRGDPGMWSWVLHRFTGVAIFFFLFVHVLDTAIIQISPNLYNQVIETYKSPVFGVLEI 66
Query: 75 LYTWAVIHHMLGGIR 89
AV+ H L G+R
Sbjct: 67 GLFGAVLFHALNGLR 81
>gi|322368771|ref|ZP_08043338.1| succinate dehydrogenase, cytochrome b556 subunit [Haladaptatus
paucihalophilus DX253]
gi|320551502|gb|EFW93149.1| succinate dehydrogenase, cytochrome b556 subunit [Haladaptatus
paucihalophilus DX253]
Length = 130
Score = 41.6 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL-SSLRCYMDGSVFEVCLFLYTWAVI 81
M+ I H+ TG V+ + T ++++ + ++ + +
Sbjct: 23 MWAWIFHKFTGWVLIGYLFTHIAVLSTATANPGTYTATIQGLEELTIVRIGEVGLLAVAV 82
Query: 82 HHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
H+L G+R L D+ + L+ + + A + + A I+ +
Sbjct: 83 FHILNGVRLLFVDLGVGLESQDKSFYASLIVTAVIVLASV 122
>gi|327398307|ref|YP_004339176.1| succinate dehydrogenase, cytochrome b556 subunit [Hippea maritima
DSM 10411]
gi|327180936|gb|AEA33117.1| succinate dehydrogenase, cytochrome b556 subunit [Hippea maritima
DSM 10411]
Length = 125
Score = 41.6 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
Query: 12 PHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEV 71
PH Y+ I HRITG ++ L + W + ++ +F++
Sbjct: 8 PHHISYKWHEGFVAWIFHRITGLLLIL-YLFLHEWVISTLQNPQGFTKAMAALENPLFKL 66
Query: 72 CLFLYTWAVIHHMLGGIR 89
+H + G+R
Sbjct: 67 LEVGLWLVASYHAINGLR 84
>gi|163793948|ref|ZP_02187922.1| succinate dehydrogenase, cytochrome b subunit [alpha
proteobacterium BAL199]
gi|159181059|gb|EDP65576.1| succinate dehydrogenase, cytochrome b subunit [alpha
proteobacterium BAL199]
Length = 113
Score = 41.6 bits (97), Expect = 0.037, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 24/63 (38%)
Query: 27 IVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLG 86
+ HR++G + L P+ L + D VF++ + + H+
Sbjct: 15 VAHRVSGVALALFLPLHFLVLGLALESGDALDRMLAVADRPVFKIAEWGLVVLLTVHLCA 74
Query: 87 GIR 89
G+R
Sbjct: 75 GLR 77
>gi|239943742|ref|ZP_04695679.1| putative succinate dehydrogenase membrane subunit [Streptomyces
roseosporus NRRL 15998]
gi|239990194|ref|ZP_04710858.1| putative succinate dehydrogenase membrane subunit [Streptomyces
roseosporus NRRL 11379]
Length = 114
Score = 41.2 bits (96), Expect = 0.043, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 26/67 (38%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M+ + HR+TG +++ V V + + + + + A++
Sbjct: 1 MWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDDVVATYKTPIVALLEYGLVAAILF 60
Query: 83 HMLGGIR 89
H L G+R
Sbjct: 61 HALNGLR 67
>gi|317508113|ref|ZP_07965797.1| succinate dehydrogenase [Segniliparus rugosus ATCC BAA-974]
gi|316253624|gb|EFV13010.1| succinate dehydrogenase [Segniliparus rugosus ATCC BAA-974]
Length = 125
Score = 41.2 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 30/75 (40%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR P M+ ++HR TG ++ V V I + + +F +
Sbjct: 7 SLYRGDPGMWSWVLHRFTGVAIFFFLFVHVLDTAIIQISPNLYDEVIGTYKTPLFGILEI 66
Query: 75 LYTWAVIHHMLGGIR 89
AV+ H L G+R
Sbjct: 67 GLFGAVLFHALNGLR 81
>gi|257069273|ref|YP_003155528.1| succinate dehydrogenase subunit C [Brachybacterium faecium DSM
4810]
gi|256560091|gb|ACU85938.1| succinate dehydrogenase subunit C [Brachybacterium faecium DSM
4810]
Length = 125
Score = 41.2 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 32/75 (42%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HRI+G +++L V V + + + + VF +
Sbjct: 8 TLYRGREGMWSWVAHRISGMLIFLFLLVHVLDTALVRVSPEAYNEVIGHYKTVVFGLGEV 67
Query: 75 LYTWAVIHHMLGGIR 89
A++ H L G+R
Sbjct: 68 GLVGAILFHALNGLR 82
>gi|15790350|ref|NP_280174.1| hypothetical protein VNG1310G [Halobacterium sp. NRC-1]
gi|10580828|gb|AAG19654.1| succinate dehydrogenase subunit C [Halobacterium sp. NRC-1]
Length = 140
Score = 41.2 bits (96), Expect = 0.048, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL-SSLRCYMDGSVFEVCLFLYTWAVI 81
M+ + H+ TG V+ + G S+L ++ + +
Sbjct: 33 MWAWVFHKFTGWVLVGYLFTHISVLSTSLQGAQVYNSTLSGLESLAIVRLLEVGLLAVAV 92
Query: 82 HHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
H+L GIR L D+ + L+ + + A + + I+ +
Sbjct: 93 FHILNGIRLLFVDLGVGLEAQDKSFYASLVLTGVIVVASV 132
>gi|213420891|ref|ZP_03353957.1| succinate dehydrogenase cytochrome b556 large membrane subunit
[Salmonella enterica subsp. enterica serovar Typhi str.
E01-6750]
Length = 55
Score = 41.2 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDK-KIATQMAKINIIASILTVLIVWII 125
A+ +H++ GIR+++ D + + + AKI+ + +++ L+ ++
Sbjct: 2 GILTALAYHVIVGIRHMLMDFGYLEETFEAGQRSAKISFVITVVLSLLAGVL 53
>gi|329938071|ref|ZP_08287522.1| succinate dehydrogenase membrane subunit [Streptomyces
griseoaurantiacus M045]
gi|329302560|gb|EGG46450.1| succinate dehydrogenase membrane subunit [Streptomyces
griseoaurantiacus M045]
Length = 110
Score = 40.8 bits (95), Expect = 0.055, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 23/61 (37%)
Query: 29 HRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGI 88
HR+TG +++ V V + + V V + A++ H L G+
Sbjct: 3 HRVTGVLIFFFLFVHVLDTALVRVSPEAYDKVVSTYKTPVVAVLEYGLVAAILFHALNGL 62
Query: 89 R 89
R
Sbjct: 63 R 63
>gi|256832059|ref|YP_003160786.1| succinate dehydrogenase, cytochrome b556 subunit [Jonesia
denitrificans DSM 20603]
gi|256685590|gb|ACV08483.1| succinate dehydrogenase, cytochrome b556 subunit [Jonesia
denitrificans DSM 20603]
Length = 126
Score = 40.8 bits (95), Expect = 0.057, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG +++L V V + +++ + +
Sbjct: 8 TLYRGREGMWSWVAHRVTGLLIFLFLFVHVLDTALVRVSPEAYNAVIGTYQTPIMGLGEA 67
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
A++ H G+R ++ D + M + I I+T
Sbjct: 68 GLVVAIVFHAFNGLRIVLVDF-WAKGPRYQRIMLWVVIGLVIVT 110
>gi|311896442|dbj|BAJ28850.1| putative succinate dehydrogenase cytochrome b subunit
[Kitasatospora setae KM-6054]
Length = 114
Score = 40.8 bits (95), Expect = 0.063, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 26/67 (38%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M+ + HR+TG +++ V + S+ + + + A++
Sbjct: 1 MWSWVAHRVTGVLIFFFLFAHVLDTALVRVSPEAYDSVIATYKIPLVNLMEYGLVAAILF 60
Query: 83 HMLGGIR 89
H L G+R
Sbjct: 61 HALNGLR 67
>gi|206889237|ref|YP_002248614.1| succinate dehydrogenase, cytochrome B-556 subunit, putative
[Thermodesulfovibrio yellowstonii DSM 11347]
gi|206741175|gb|ACI20232.1| succinate dehydrogenase, cytochrome B-556 subunit, putative
[Thermodesulfovibrio yellowstonii DSM 11347]
Length = 114
Score = 40.4 bits (94), Expect = 0.073, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 7/112 (6%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YR +VHR+TG ++ L ++ + + + L +M + ++ +
Sbjct: 3 YRWNTGSLAWLVHRVTGIILSLYLIAHIYVLSHLKD-PVAYNKLMAFMKNPLLKIGELIL 61
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDI 128
V+ H+ GIR + L+ ++T+ K +L V IVW+
Sbjct: 62 FAIVLKHVFAGIRITL------LEIGVSTKYQKPMAYVGVLLVFIVWLAGAF 107
>gi|292656926|ref|YP_003536823.1| succinate dehydrogenase subunit C [Haloferax volcanii DS2]
gi|291370396|gb|ADE02623.1| succinate dehydrogenase subunit C (cytochrome b-556) [Haloferax
volcanii DS2]
Length = 131
Score = 40.4 bits (94), Expect = 0.076, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL-SSLRCYMDGSVFEVCLFLYTWAVI 81
M+ I H+ TG V+ + +G ++++ V + +
Sbjct: 23 MWAWIFHKFTGWVLVGYLFTHIAVLSTALSGATAYTNTIQALESLLVVRILEVGLLAVAV 82
Query: 82 HHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
H+L G+R L D+ + L+ + + A + + I+ +
Sbjct: 83 FHILNGLRLLFVDLGVGLEAQDKSFYASLILTGVIVVASV 122
>gi|146303884|ref|YP_001191200.1| succinate dehydrogenase, cytochrome b subunit [Metallosphaera
sedula DSM 5348]
gi|145702134|gb|ABP95276.1| succinate dehydrogenase subunit C [Metallosphaera sedula DSM 5348]
Length = 133
Score = 40.4 bits (94), Expect = 0.082, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+HRITG + L + + + G + +SL + + +V L + A+I H L G
Sbjct: 19 LHRITGWGLTLFIVGHIVFVHEVRYGSYVWNSLLAIDESVLGKVLLVVIMMALIFHGLNG 78
Query: 88 IRYLIWDVSLCLDKK 102
IR ++ + L K
Sbjct: 79 IRIMLIESGHLLTKP 93
>gi|221632362|ref|YP_002521583.1| succinate dehydrogenase, cytochrome subunit [Thermomicrobium roseum
DSM 5159]
gi|221156089|gb|ACM05216.1| succinate dehydrogenase, cytochrome subunit [Thermomicrobium roseum
DSM 5159]
Length = 139
Score = 40.4 bits (94), Expect = 0.092, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 32/79 (40%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YR P M HRITG V L + + F + G + L VF + +
Sbjct: 23 YRPPPGMISWAFHRITGLGVLLFLLLHIVDIFLVNYGPEVFNELLFLYRHPVFRIGEIIL 82
Query: 77 TWAVIHHMLGGIRYLIWDV 95
AV +H G+R ++ D
Sbjct: 83 VGAVYYHAANGVRIMLIDF 101
>gi|169236083|ref|YP_001689283.1| succinate dehydrogenase subunit C (cytochrome b-556) [Halobacterium
salinarum R1]
gi|14285417|sp|Q9HQ63|DHSD_HALSA RecName: Full=Succinate dehydrogenase hydrophobic membrane anchor
subunit
gi|167727149|emb|CAP13935.1| succinate dehydrogenase subunit C (cytochrome b-556) [Halobacterium
salinarum R1]
Length = 130
Score = 40.0 bits (93), Expect = 0.093, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL-SSLRCYMDGSVFEVCLFLYTWAVI 81
M+ + H+ TG V+ + G S+L ++ + +
Sbjct: 23 MWAWVFHKFTGWVLVGYLFTHISVLSTSLQGAQVYNSTLSGLESLAIVRLLEVGLLAVAV 82
Query: 82 HHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
H+L GIR L D+ + L+ + + A + + I+ +
Sbjct: 83 FHILNGIRLLFVDLGVGLEAQDKSFYASLVLTGVIVVASV 122
>gi|209520501|ref|ZP_03269259.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia sp. H160]
gi|209499039|gb|EDZ99136.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia sp. H160]
Length = 122
Score = 40.0 bits (93), Expect = 0.094, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
RIT +V+ + T +++ WFF + + ++ F+ ++ +H GIR
Sbjct: 27 RITAAVMAIYTVILLVWFFGAQDF--SYDGWASIFATQWMKLATFVTLLSLFYHAWVGIR 84
Query: 90 YLIWDVSLCLDKKIATQMAKINIIAS 115
+ D + ++ Q A I + +
Sbjct: 85 DIWMDYVKPVGVRLFLQAATIVWLLA 110
>gi|312796840|ref|YP_004029762.1| succinate dehydrogenase membrane anchor subunit [Burkholderia
rhizoxinica HKI 454]
gi|312168615|emb|CBW75618.1| Succinate dehydrogenase membrane anchor subunit (EC 1.3.99.1)
[Burkholderia rhizoxinica HKI 454]
Length = 122
Score = 40.0 bits (93), Expect = 0.099, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 27 IVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLG 86
I R T ++ + T +++ WFF N + ++ F+ A+ +H
Sbjct: 24 IAQRATAMIMAIYTVILLVWFFLAGNF--SYDGWAAIFSIQWMKLATFVTLLALFYHAWV 81
Query: 87 GIRYLIWD 94
G+R + D
Sbjct: 82 GVRDIWMD 89
>gi|186470390|ref|YP_001861708.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia phymatum STM815]
gi|184196699|gb|ACC74662.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia phymatum STM815]
Length = 122
Score = 40.0 bits (93), Expect = 0.099, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
RIT ++ + T +++ WFF + ++ F+ ++ +H G+R
Sbjct: 27 RITAVIMAVYTLILLGWFFGAQAF--SYDGWAGIFATQWMKLATFVTLLSLFYHAWVGVR 84
Query: 90 YLIWD 94
+ D
Sbjct: 85 DIWMD 89
>gi|224109094|ref|XP_002333308.1| predicted protein [Populus trichocarpa]
gi|224112058|ref|XP_002332832.1| predicted protein [Populus trichocarpa]
gi|224144269|ref|XP_002336125.1| predicted protein [Populus trichocarpa]
gi|222833271|gb|EEE71748.1| predicted protein [Populus trichocarpa]
gi|222836176|gb|EEE74597.1| predicted protein [Populus trichocarpa]
gi|222873369|gb|EEF10500.1| predicted protein [Populus trichocarpa]
Length = 218
Score = 40.0 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 8 RPLSPHLQIYRLIPTMF 24
RPLSPHL IY+ T
Sbjct: 5 RPLSPHLPIYKPQLTSA 21
>gi|55377909|ref|YP_135759.1| succinate dehydrogenase subunit C [Haloarcula marismortui ATCC
43049]
gi|55230634|gb|AAV46053.1| succinate dehydrogenase subunit C [Haloarcula marismortui ATCC
43049]
Length = 139
Score = 40.0 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 9/108 (8%)
Query: 23 MFVSIVHRITGSVVY---------LGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCL 73
M+ I H+ TG V+ L T V V A + S+L +
Sbjct: 23 MWAWIFHKFTGWVLVGYLFTHIAVLSTSVGVDPASAQAGSDLYTSTLSGLESLLIVRFLE 82
Query: 74 FLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ H+L GIR L+ D+ + L+ + + A + + +I+ +
Sbjct: 83 VGLLAVAVFHILNGIRLLMVDLGVGLESQDKSFYASLLLTGAIVIASV 130
>gi|269837029|ref|YP_003319257.1| succinate dehydrogenase, cytochrome b556 subunit [Sphaerobacter
thermophilus DSM 20745]
gi|269786292|gb|ACZ38435.1| succinate dehydrogenase, cytochrome b556 subunit [Sphaerobacter
thermophilus DSM 20745]
Length = 121
Score = 40.0 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YR M +HR+ G V + + + F + G + L +F +
Sbjct: 8 YRPPQGMVSWALHRLAGLGVLVFLLLHIVDIFAVGYGPEAFNDLLFIYRHPIFRAGEVIL 67
Query: 77 TWAVIHHMLGGIRYL---IWDVSLCLDKKIATQMAKINIIASILTVLI 121
+ +H L GIR + W ++++ + + +IA I T ++
Sbjct: 68 VAGLYYHALNGIRIILVDFWSKGWKYERQMFYAVVALFLIAFIPTAIL 115
>gi|186473181|ref|YP_001860523.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia phymatum STM815]
gi|184195513|gb|ACC73477.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia phymatum STM815]
Length = 122
Score = 40.0 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
RIT ++ + T +++ WFF + ++ F+ ++ +H G+R
Sbjct: 27 RITAVIMAVYTVILLGWFFGAQAF--SYDGWAGIFATQWMKLATFVTLLSLFYHAWVGVR 84
Query: 90 YLIWD 94
+ D
Sbjct: 85 DIWMD 89
>gi|213018855|ref|ZP_03334663.1| succinate dehydrogenase, cytochrome b556 subunit [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
gi|212995806|gb|EEB56446.1| succinate dehydrogenase, cytochrome b556 subunit [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
Length = 45
Score = 39.7 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 81 IHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
++H L GIR+L+WD L L+ + A + I L+ +
Sbjct: 1 MYHFLNGIRHLLWDAGLNLEIASVLKSAILLTIMLFLSTMAF 42
>gi|76802769|ref|YP_330864.1| succinate dehydrogenase, subunit C (cytochrome b-556) [Natronomonas
pharaonis DSM 2160]
gi|14285415|sp|P72109|DHSD_NATPH RecName: Full=Succinate dehydrogenase hydrophobic membrane anchor
subunit
gi|1524299|emb|CAA68979.1| SDH subunit C-homologue; membrane anchor [Natronomonas pharaonis]
gi|76558634|emb|CAI50226.1| succinate dehydrogenase, subunit C (cytochrome b-556) [Natronomonas
pharaonis DSM 2160]
Length = 130
Score = 39.7 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 1/100 (1%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLS-SLRCYMDGSVFEVCLFLYTWAVI 81
M+ I H+ TG V+ V T + +L+ V +
Sbjct: 23 MWAWIFHKFTGWVLIGYLFTHVAVLSTATVDAATYTQTLQGLESLLVVRFLEVGLLAVAV 82
Query: 82 HHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
H+L GIR L D+ + L+ + A + + A+I I
Sbjct: 83 FHILNGIRLLFVDLGVGLEAQDKAFYAALIVTAAITVASI 122
>gi|71908477|ref|YP_286064.1| succinate dehydrogenase subunit D [Dechloromonas aromatica RCB]
gi|71848098|gb|AAZ47594.1| succinate dehydrogenase subunit D [Dechloromonas aromatica RCB]
Length = 115
Score = 39.7 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 14/102 (13%), Positives = 36/102 (35%), Gaps = 6/102 (5%)
Query: 27 IVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLG 86
I R T ++ + + ++ + +T + + V + FL+ ++ +H
Sbjct: 17 IAQRATAVIMAVYSVLIAAVLLVVR--PNTFEAWQGVFANGVIKFLTFLFFVSLFYHAWI 74
Query: 87 GIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDI 128
G+R + D K ++ + + L W +
Sbjct: 75 GVRDIWMD----YVKPTGVRLTLHVVTIAALVGYTAWAAAIL 112
>gi|83951345|ref|ZP_00960077.1| putative succinate dehydrogenase cytochrome b-556 subunit
[Roseovarius nubinhibens ISM]
gi|83836351|gb|EAP75648.1| putative succinate dehydrogenase cytochrome b-556 subunit
[Roseovarius nubinhibens ISM]
Length = 115
Score = 39.7 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 26/62 (41%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+HR +G + + P ++ L + D + ++ F + + HMLGG
Sbjct: 18 LHRFSGLALAIFLPAHLYVLSLALTDPARLDGFLHWADLPLVKLAEFGLVFLLAAHMLGG 77
Query: 88 IR 89
+R
Sbjct: 78 LR 79
>gi|320161618|ref|YP_004174843.1| putative succinate dehydrogenase cytochrome b subunit [Anaerolinea
thermophila UNI-1]
gi|319995472|dbj|BAJ64243.1| putative succinate dehydrogenase cytochrome b subunit [Anaerolinea
thermophila UNI-1]
Length = 145
Score = 39.7 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
Query: 28 VHRITG--SVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHML 85
+HRITG V++L +V F A + ++F + + + H +
Sbjct: 31 LHRITGLGVVLFLAIHIVDTSFVYFA--PQLYDEVLNVYRSTIFGLGEIALVFCLFFHGV 88
Query: 86 GGIRYLIWDVSL--CLDKKIATQMAKINIIASILT 118
G+R D+ + + + +I +++
Sbjct: 89 NGLRIAYLDLFAPQNWTIEKTRRSTYVALIVTLVL 123
>gi|254820240|ref|ZP_05225241.1| hypothetical protein MintA_09946 [Mycobacterium intracellulare
ATCC 13950]
Length = 112
Score = 39.7 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 33/73 (45%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M+ ++HRI+G+ ++ V V + T +++ + + + AV+
Sbjct: 1 MWSWVLHRISGATIFFFLFVHVLDAAMLRISPQTYNAVIHDYQMPIVGLMEYGLIAAVLF 60
Query: 83 HMLGGIRYLIWDV 95
H L GIR ++ D
Sbjct: 61 HGLNGIRVILIDF 73
>gi|254461187|ref|ZP_05074603.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacterales
bacterium HTCC2083]
gi|206677776|gb|EDZ42263.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodobacteraceae
bacterium HTCC2083]
Length = 117
Score = 39.3 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 2/107 (1%)
Query: 18 RLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYT 77
R P V ++HR++G + L P+ + L + V ++
Sbjct: 10 RAHPLWLVYLLHRMSGLALTLFLPLHFWVLALAMTDPARLDGFLHLTEAGVVKLAEIGLV 69
Query: 78 WAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWI 124
+ + HM GG+R + + +A S L L+ ++
Sbjct: 70 FLLAVHMFGGLR--LMAMEWLPWSPSQKTLAAGAAALSFLIALLFFL 114
>gi|257093960|ref|YP_003167601.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
gi|257046484|gb|ACV35672.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
Length = 115
Score = 39.3 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 6/99 (6%)
Query: 27 IVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLG 86
I+ R T + + V+F A + + R + FL+ +V +H
Sbjct: 17 IIQRAT--AIIMAIYTVIFLVVAGAVAPDSFEAWRGIFANGFMKFATFLFFISVFYHAWI 74
Query: 87 GIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
G+R + D K ++ + + ++L W +
Sbjct: 75 GVRDIWMD----YIKPAGLRLLMMIVTVAVLVGYAGWAV 109
>gi|300711137|ref|YP_003736951.1| succinate dehydrogenase, cytochrome b556 subunit [Halalkalicoccus
jeotgali B3]
gi|299124820|gb|ADJ15159.1| succinate dehydrogenase, cytochrome b556 subunit [Halalkalicoccus
jeotgali B3]
Length = 130
Score = 39.3 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 1/100 (1%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTL-SSLRCYMDGSVFEVCLFLYTWAVI 81
M+ I H+ TG V+ + G +L+ V V +
Sbjct: 23 MWAWIFHKFTGWVLVGYLFTHIAVLSTATVGTGVYTETLQSLESLFVVRVLEVGLLSVAV 82
Query: 82 HHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
H+L G+R L+ D+ + L+ + + A + + I +
Sbjct: 83 FHILNGVRLLMVDLGVGLEAQDKSFYAALIVTGLIAIASV 122
>gi|329120252|ref|ZP_08248920.1| succinate dehydrogenase cytochrome b small subunit [Neisseria
bacilliformis ATCC BAA-1200]
gi|327462593|gb|EGF08916.1| succinate dehydrogenase cytochrome b small subunit [Neisseria
bacilliformis ATCC BAA-1200]
Length = 114
Score = 39.3 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
RIT ++ + V + +A G S + + + +V +A++ H GIR
Sbjct: 20 RITAVIMIVYAAVFFLFLIGMA-GAQDYSQWQAFFGKTWVKVFTQTTLFALLFHAWVGIR 78
Query: 90 YLIWDVSLCLDKKIATQMAKINIIA 114
L D ++ A I +
Sbjct: 79 DLWMDYIKPFGLRLTLHCATIVWLV 103
>gi|307721025|ref|YP_003892165.1| DNA translocase FtsK [Sulfurimonas autotrophica DSM 16294]
gi|306979118|gb|ADN09153.1| DNA translocase FtsK [Sulfurimonas autotrophica DSM 16294]
Length = 728
Score = 39.3 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 31 ITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRY 90
I G ++YLG + + + T SS G + V LF+ + +
Sbjct: 9 IFGVLIYLGFSTLFGSTGLMGSYGATFSSYNQLYFGYISFVYLFILLAPLYY-------- 60
Query: 91 LIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
L D S K T + + + ++++ +V
Sbjct: 61 LYKDTSFGFRKAEVTIASFLLLCSALIAQALV 92
>gi|220919926|ref|YP_002495229.1| succinate dehydrogenase, cytochrome b subunit [Methylobacterium
nodulans ORS 2060]
gi|219952346|gb|ACL62737.1| succinate dehydrogenase, cytochrome b subunit [Methylobacterium
nodulans ORS 2060]
Length = 115
Score = 39.3 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 26/70 (37%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
++VHRI+G + P G L + D V ++ + +
Sbjct: 13 WIAAMVHRISGLGLAAFLPFHFLALGLSLQGASELDGFLHWTDTPVVKIAEGGLVFLLAV 72
Query: 83 HMLGGIRYLI 92
H LGG+R L
Sbjct: 73 HFLGGLRVLF 82
>gi|170691024|ref|ZP_02882190.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia graminis C4D1M]
gi|170691141|ref|ZP_02882307.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia graminis C4D1M]
gi|323529178|ref|YP_004231330.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia sp. CCGE1001]
gi|323529266|ref|YP_004231418.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia sp. CCGE1001]
gi|170144273|gb|EDT12435.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia graminis C4D1M]
gi|170144390|gb|EDT12552.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia graminis C4D1M]
gi|323386180|gb|ADX58270.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia sp. CCGE1001]
gi|323386268|gb|ADX58358.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia sp. CCGE1001]
Length = 122
Score = 38.9 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
RIT V+ L T +++ WFF + + ++ F+ ++ +H GIR
Sbjct: 27 RITACVMALYTVILLAWFFGARDF--SYEGWASIFATQWMKLATFVTLLSLFYHAWVGIR 84
Query: 90 YLIWD 94
+ D
Sbjct: 85 DIWMD 89
>gi|11544909|emb|CAC17633.1| succinate dehydrogenase complex subunit C [Sus scrofa]
Length = 21
Score = 38.9 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 83 HMLGGIRYLIWDVSLCLDKKI 103
H GIR+LIWD+ L
Sbjct: 1 HTWNGIRHLIWDLGKGLTIPQ 21
>gi|317120967|ref|YP_004100970.1| succinate dehydrogenase, cytochrome b556 subunit [Thermaerobacter
marianensis DSM 12885]
gi|315590947|gb|ADU50243.1| succinate dehydrogenase, cytochrome b556 subunit [Thermaerobacter
marianensis DSM 12885]
Length = 121
Score = 38.9 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 28/68 (41%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+HR++G + L + + F G + +F V + V++H + G
Sbjct: 18 LHRLSGVGIMLFLMMHIVDTFLAGFGPQVYDHVMALYRAPLFMVLEVVLVAGVVYHAVNG 77
Query: 88 IRYLIWDV 95
+R ++ D
Sbjct: 78 LRVIVIDF 85
>gi|288931615|ref|YP_003435675.1| succinate dehydrogenase, subunit D (SdhD) [Ferroglobus placidus DSM
10642]
gi|288893863|gb|ADC65400.1| succinate dehydrogenase, subunit D (SdhD) [Ferroglobus placidus DSM
10642]
Length = 115
Score = 38.9 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 29/74 (39%)
Query: 31 ITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRY 90
ITG ++++ ++ + + + + F+V F++ V H G+R
Sbjct: 19 ITGILLFVFVIYHLYVTHLAEHDALSYEKVVERLANPSFKVAYFVFLAVVSFHAFNGLRA 78
Query: 91 LIWDVSLCLDKKIA 104
+I D K A
Sbjct: 79 IILDTDFGARNKRA 92
>gi|187921486|ref|YP_001890518.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia phytofirmans PsJN]
gi|187719924|gb|ACD21147.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia phytofirmans PsJN]
Length = 122
Score = 38.9 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
RIT +V+ + T +++ WFF + + ++ F+ ++ +H GIR
Sbjct: 27 RITAAVMAIYTVILLAWFFGARDF--SYDGWASIFATQWMKLATFVTLLSLFYHAWVGIR 84
Query: 90 YLIWD 94
+ D
Sbjct: 85 DIWMD 89
>gi|110668885|ref|YP_658696.1| succinate dehydrogenase, subunit C (cytochrome b-556)
[Haloquadratum walsbyi DSM 16790]
gi|109626632|emb|CAJ53099.1| succinate dehydrogenase, subunit C (cytochrome b-556)
[Haloquadratum walsbyi DSM 16790]
Length = 131
Score = 38.9 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 13/100 (13%), Positives = 37/100 (37%), Gaps = 1/100 (1%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSS-LRCYMDGSVFEVCLFLYTWAVI 81
M+ + H+ TG V+ + ++ ++ + + +
Sbjct: 23 MWAWVFHKFTGWVLVGYLFTHIAVLSTALQSPEAYTTTIQSLESLLIVRLLEVGLLAVSV 82
Query: 82 HHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
H+L G+R L D+ + + + + A + + +I+ +
Sbjct: 83 FHILNGLRLLFVDLGVGISGQDQSFYASLILTGAIVIASV 122
>gi|296159710|ref|ZP_06842533.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia sp. Ch1-1]
gi|295890154|gb|EFG69949.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia sp. Ch1-1]
Length = 122
Score = 38.9 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
RIT +++ + T +++ WFF + + ++ F+ ++ +H GIR
Sbjct: 27 RITATIMAVYTVILLAWFFGARDF--SYDGWASIFATQWMKLATFVTLLSLFYHAWVGIR 84
Query: 90 YLIWD 94
+ D
Sbjct: 85 DIWMD 89
>gi|193214177|ref|YP_001995376.1| succinate dehydrogenase cytochrome b556 subunit [Chloroherpeton
thalassium ATCC 35110]
gi|193087654|gb|ACF12929.1| succinate dehydrogenase, cytochrome b556 subunit [Chloroherpeton
thalassium ATCC 35110]
Length = 147
Score = 38.9 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 15/105 (14%), Positives = 37/105 (35%), Gaps = 3/105 (2%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
Y M+ ++HR +G + + + + +F++ +
Sbjct: 30 YNWHGGMWAWLLHRASGIGLVVYLIIHINGLR-SMYDPVKFDMAMSAYRSPLFKIGELVI 88
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
V +H + G R ++ D L + +M + SI+ + +
Sbjct: 89 LALVAYHSINGFRIVMIDF-LGWTPQQ-KRMFFATVALSIVIIAL 131
>gi|226941337|ref|YP_002796411.1| SdhD [Laribacter hongkongensis HLHK9]
gi|226716264|gb|ACO75402.1| SdhD [Laribacter hongkongensis HLHK9]
Length = 116
Score = 38.9 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 27 IVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLG 86
IV R+T +V+ + T ++V + + + + +V + AV+ H+
Sbjct: 18 IVQRMTAAVMLVYTVLIVLMLLAM---PSSYEGWQALFSLTWVQVITQITFIAVVWHLWV 74
Query: 87 GIRYLIWDVSL--CLDKKIATQMAKINIIASILTVLIVWIIK 126
GIR L D L + A + + + ++VW IK
Sbjct: 75 GIRDLWMDYIKPDGLRLALHALTAVWLVGCLVYSFVVVWGIK 116
>gi|78045136|ref|YP_360204.1| hypothetical protein CHY_1372 [Carboxydothermus hydrogenoformans
Z-2901]
gi|77997251|gb|ABB16150.1| putative membrane protein [Carboxydothermus hydrogenoformans
Z-2901]
Length = 139
Score = 38.5 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 31/77 (40%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+HRI+G + + + + G + +D +F+ FL A + H L G
Sbjct: 26 LHRISGLGLIIYLLLHIVVTSFRLGGPDAWAKAMGTVDSPIFKFGEFLVVVAGVFHGLNG 85
Query: 88 IRYLIWDVSLCLDKKIA 104
+R ++ + + K
Sbjct: 86 LRLILTEFGYFIGKPER 102
>gi|295700756|ref|YP_003608649.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia sp. CCGE1002]
gi|295439969|gb|ADG19138.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia sp. CCGE1002]
Length = 122
Score = 38.5 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T V+ + T +++ WFF + + ++ F+ ++ +H G+R
Sbjct: 27 RVTAVVMAVYTVILLAWFFLARDF--SYDGWASIFATQWMKLATFVTLLSLFYHAWVGVR 84
Query: 90 YLIWD 94
+ D
Sbjct: 85 DIWMD 89
>gi|256389984|ref|YP_003111548.1| succinate dehydrogenase, cytochrome b556 subunit [Catenulispora
acidiphila DSM 44928]
gi|256356210|gb|ACU69707.1| succinate dehydrogenase, cytochrome b556 subunit [Catenulispora
acidiphila DSM 44928]
Length = 132
Score = 38.5 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 1/106 (0%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + R+TG +V+ V + HT + + V +
Sbjct: 11 TLYRGREGMWSWVAQRVTGVLVFFFLFAHVLDTALVRVSPHTYNQVIGTYKNPVVNLLEV 70
Query: 75 LYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVL 120
AV+ H G+R + D K Q+ + + +L
Sbjct: 71 GLVGAVMFHAFNGLRIIAIDF-WSKGPKYQRQLLWAVVGLWAVLML 115
>gi|254776730|ref|ZP_05218246.1| hypothetical protein MaviaA2_18966 [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 112
Score = 38.5 bits (89), Expect = 0.33, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 33/73 (45%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M+ ++HRI+G+ ++ V V + T +++ + V + AV+
Sbjct: 1 MWSWVLHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVIHDYQMPIVGVMEYGLIAAVLF 60
Query: 83 HMLGGIRYLIWDV 95
H L GIR ++ D
Sbjct: 61 HGLNGIRVILIDF 73
>gi|170745269|ref|YP_001766726.1| succinate dehydrogenase cytochrome b subunit [Methylobacterium
radiotolerans JCM 2831]
gi|170658870|gb|ACB27924.1| succinate dehydrogenase cytochrome b subunit [Methylobacterium
radiotolerans JCM 2831]
Length = 125
Score = 38.5 bits (89), Expect = 0.33, Method: Composition-based stats.
Identities = 14/94 (14%), Positives = 29/94 (30%)
Query: 29 HRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGI 88
HR++G + L P+ G L + A+ HM G+
Sbjct: 29 HRLSGIALALFLPMHFIALGTALQGADRLERFLGLTHNGFVRTAEWGLVCALAVHMALGL 88
Query: 89 RYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
R L + ++ + +I + ++
Sbjct: 89 RVLAIEWLRFRERNARVVSGCLATAFAIGLLFLL 122
>gi|170783165|ref|YP_001711499.1| succinate dehydrogenase cytochrome b556 subunit [Clavibacter
michiganensis subsp. sepedonicus]
gi|169157735|emb|CAQ02937.1| succinate dehydrogenase cytochrome b556 subunit [Clavibacter
michiganensis subsp. sepedonicus]
Length = 114
Score = 38.5 bits (89), Expect = 0.34, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 1/96 (1%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M+ ++HRITG ++ V V I +++ + + A+
Sbjct: 1 MWSWVLHRITGVSIFFFLLVHVLDTSLIRVSPEAYNAVIGTYKNPIMGIGEVALVGAIGF 60
Query: 83 HMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
H L G+R ++ D K M + I ++
Sbjct: 61 HALNGLRIILIDF-WRFGAKHQRLMFYVVIGLWVVL 95
>gi|118463187|ref|YP_883435.1| succinate dehydrogenase, cytochrome b556 subunit [Mycobacterium
avium 104]
gi|118164474|gb|ABK65371.1| succinate dehydrogenase, cytochrome b556 subunit [Mycobacterium
avium 104]
Length = 112
Score = 38.1 bits (88), Expect = 0.36, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 33/73 (45%)
Query: 23 MFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
M+ ++HRI+G+ ++ V V + T +++ + V + AV+
Sbjct: 1 MWSWVLHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVIHDYQMPIVGVMEYGLIAAVLF 60
Query: 83 HMLGGIRYLIWDV 95
H L GIR ++ D
Sbjct: 61 HGLNGIRVILIDF 73
>gi|91777243|ref|YP_552451.1| succinate dehydrogenase subunit D [Burkholderia xenovorans LB400]
gi|91689903|gb|ABE33101.1| succinate dehydrogenase subunit D [Burkholderia xenovorans LB400]
Length = 122
Score = 38.1 bits (88), Expect = 0.38, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
RIT V+ + T +++ WFF + + ++ F+ ++ +H GIR
Sbjct: 27 RITACVMAIYTVILLVWFFGARDF--SYEGWSSIFATQWMKLATFVTLLSLFYHAWVGIR 84
Query: 90 YLIWD 94
+ D
Sbjct: 85 DIWMD 89
>gi|124027052|ref|YP_001012372.1| succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Hyperthermus butylicus DSM 5456]
gi|123977746|gb|ABM80027.1| Succinate dehydrogenase/fumarate reductase, cytochrome b subunit
[Hyperthermus butylicus DSM 5456]
Length = 159
Score = 38.1 bits (88), Expect = 0.42, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 27 IVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLG 86
I+HR+TG ++ + V N + + + ++ ++ AVI+H L
Sbjct: 39 ILHRVTGFIIVVYLLAHVIVTSYSTNPTQWEDIMSTFANSLFNKIGEWIVAGAVIYHGLN 98
Query: 87 GIRYLI 92
GIR L+
Sbjct: 99 GIRLLL 104
>gi|313673226|ref|YP_004051337.1| succinate dehydrogenase subunit c [Calditerrivibrio nitroreducens
DSM 19672]
gi|312939982|gb|ADR19174.1| succinate dehydrogenase subunit C [Calditerrivibrio nitroreducens
DSM 19672]
Length = 117
Score = 38.1 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 14/90 (15%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
Y+ M ++HRI+G ++ ++ I + ++ V + +
Sbjct: 15 YKKHTGMTAWLLHRISGVIL------GLYLLLHIFSKAGYAGWFGALTGNAIARVIILV- 67
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDKKIATQ 106
A +H G R ++ D S ++++ ++
Sbjct: 68 --AFAYHAFNGFRIVLIDFSNGSEREVFSK 95
>gi|329903474|ref|ZP_08273493.1| Succinate dehydrogenase hydrophobic membrane anchor protein
[Oxalobacteraceae bacterium IMCC9480]
gi|327548349|gb|EGF33034.1| Succinate dehydrogenase hydrophobic membrane anchor protein
[Oxalobacteraceae bacterium IMCC9480]
Length = 121
Score = 38.1 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
RIT +V+ + T +++ FF N + + F++ F+ A+ +H G+R
Sbjct: 26 RITAAVMAVYTVILLVVFFKAQNF--SYAGWAGMFSQQWFKIATFVTFLALFYHAWVGMR 83
Query: 90 YLIWDVSLCLDKKIATQMAKI--NIIASILTVLIVW 123
+ D + +I+ Q+A I I + T I+W
Sbjct: 84 DIWMDYVKPVSIRISLQVATILWLIACAGWTAQIIW 119
>gi|114560911|ref|XP_001173988.1| PREDICTED: succinate dehydrogenase complex, subunit C isoform 1
[Pan troglodytes]
gi|78096643|dbj|BAE46980.1| succinate dehydrogenase complex, subunit C delta3+5 alternative
splicing variant [Homo sapiens]
Length = 116
Score = 38.1 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 11 SPHLQIYRLIPTMFVSIVHRITGSVVYL 38
SP L I M +SI HR TG +
Sbjct: 19 SPQLCIRNWSLPMAMSICHRGTGIALSA 46
>gi|134094983|ref|YP_001100058.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with
SdhC [Herminiimonas arsenicoxydans]
gi|133738886|emb|CAL61933.1| Succinate dehydrogenase hydrophobic membrane anchor subunit
[Herminiimonas arsenicoxydans]
Length = 121
Score = 37.7 bits (87), Expect = 0.47, Method: Composition-based stats.
Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T ++ + T V++ F + + F++ F+ A+ +H G+R
Sbjct: 26 RVTAIIMIVYTVVLLVAFLLA--SDFSYEGWAGLFAQQWFKMFTFVTFLALFYHAWVGMR 83
Query: 90 YLIWDVSLCLDKKIATQMAKINIIAS 115
+ D + ++ Q+A I + +
Sbjct: 84 NIWMDYIKPVSIRLILQVATIVWLVA 109
>gi|209521207|ref|ZP_03269930.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia sp. H160]
gi|209498349|gb|EDZ98481.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia sp. H160]
Length = 122
Score = 37.7 bits (87), Expect = 0.51, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T V+ + T +++ WFF + + ++ F+ ++ +H GIR
Sbjct: 27 RVTACVMAVYTVILLAWFFLARDF--SYDGWASIFATQWMKLATFVTLLSLFYHAWVGIR 84
Query: 90 YLIWD 94
+ D
Sbjct: 85 DIWMD 89
>gi|313902528|ref|ZP_07835929.1| succinate dehydrogenase, cytochrome b556 subunit [Thermaerobacter
subterraneus DSM 13965]
gi|313467214|gb|EFR62727.1| succinate dehydrogenase, cytochrome b556 subunit [Thermaerobacter
subterraneus DSM 13965]
Length = 121
Score = 37.7 bits (87), Expect = 0.52, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+HR++G + L + + F G + +F V + V++H + G
Sbjct: 18 LHRLSGVGIMLFLMMHIVDTFLAGFGPQVYDHVMAIYRAPLFMVLEVVLVGGVVYHAVNG 77
Query: 88 IRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDIV 129
+R +I D A + K I+A ++ L+++I ++
Sbjct: 78 LRVIIIDF-----WPNALRWHKSLIVAEVIVFLVLFIPAAVI 114
>gi|152979976|ref|YP_001353197.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Janthinobacterium sp. Marseille]
gi|151280053|gb|ABR88463.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Janthinobacterium sp. Marseille]
Length = 121
Score = 37.7 bits (87), Expect = 0.59, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
RIT V+ L T V++ F + + F++ F+ ++ +H G+R
Sbjct: 26 RITAIVMVLYTLVLLIAFLTATDF--SYEGWAGLFAQQWFKMFTFVTFLSLFYHAWVGMR 83
Query: 90 YLIWDVSLCLDKKIATQMAKINIIAS 115
+ D + ++A Q+A I + +
Sbjct: 84 NIWMDYIKPVSIRLALQVATILWLVA 109
>gi|308176511|ref|YP_003915917.1| succinate dehydrogenase membrane subunit [Arthrobacter
arilaitensis Re117]
gi|307743974|emb|CBT74946.1| succinate dehydrogenase membrane subunit [Arthrobacter
arilaitensis Re117]
Length = 126
Score = 37.3 bits (86), Expect = 0.63, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 31/81 (38%)
Query: 15 QIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLF 74
+YR M+ + HR+TG V++L V V + ++ +
Sbjct: 8 TLYRGHEGMWSWVGHRVTGVVIFLYLLVHVLDTAMVRVDAGAYDAIISTYQTPWMALGET 67
Query: 75 LYTWAVIHHMLGGIRYLIWDV 95
A++ H G+R ++ D
Sbjct: 68 GLVAAILFHAFNGLRLILVDF 88
>gi|149412305|ref|XP_001513419.1| PREDICTED: similar to Probable G-protein coupled receptor 125,
partial [Ornithorhynchus anatinus]
Length = 1289
Score = 37.3 bits (86), Expect = 0.69, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 33 GSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLG--GIRY 90
G+ + L V ++ F +A + L CL L + +HH + +R
Sbjct: 968 GAGMTLLLYVALWIFGALAAS--SYYPLDLVFSCFFGATCLCLSAFVTVHHCVNREDVR- 1024
Query: 91 LIW 93
L W
Sbjct: 1025 LAW 1027
>gi|291279089|ref|YP_003495924.1| succinate dehydrogenase cytochrome b subunit [Deferribacter
desulfuricans SSM1]
gi|290753791|dbj|BAI80168.1| succinate dehydrogenase, cytochrome b subunit [Deferribacter
desulfuricans SSM1]
Length = 127
Score = 37.0 bits (85), Expect = 0.79, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
YR M ++HRITG ++ ++F A +SL +FL
Sbjct: 25 YRKHTGMTAWLLHRITGVIL---GLYLIFHILGKAGVAEWFTSLTANAG---VRAVVFLT 78
Query: 77 TWAVIHHMLGGIRYLIWDVSLCLDK 101
I+H G R ++ D S +K
Sbjct: 79 ---FIYHAFNGFRIVLIDFSNGAEK 100
>gi|167840399|ref|ZP_02467083.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia thailandensis MSMB43]
Length = 122
Score = 37.0 bits (85), Expect = 0.81, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T +V+ + T +++ WFF + + ++ F+ ++ +H G+R
Sbjct: 27 RVTAAVMAIYTVILLVWFFTARDF--SYEGWASIFATQWMKLATFVTLLSLFYHAWVGVR 84
Query: 90 YLIWD 94
+ D
Sbjct: 85 DIWMD 89
>gi|307726506|ref|YP_003909719.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia sp. CCGE1003]
gi|307726615|ref|YP_003909828.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia sp. CCGE1003]
gi|307587031|gb|ADN60428.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia sp. CCGE1003]
gi|307587140|gb|ADN60537.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia sp. CCGE1003]
Length = 122
Score = 37.0 bits (85), Expect = 0.98, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T V+ + T +++ WFF + + ++ F+ ++ +H GIR
Sbjct: 27 RLTACVMAIYTVILLAWFFGARDF--SYEGWASIFATQWMKLATFVTLLSLFYHAWVGIR 84
Query: 90 YLIWD 94
+ D
Sbjct: 85 DIWMD 89
>gi|298246053|ref|ZP_06969859.1| succinate dehydrogenase, cytochrome b556 subunit [Ktedonobacter
racemifer DSM 44963]
gi|297553534|gb|EFH87399.1| succinate dehydrogenase, cytochrome b556 subunit [Ktedonobacter
racemifer DSM 44963]
Length = 136
Score = 37.0 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 3/109 (2%)
Query: 17 YRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLY 76
Y+ M+ ++HR+TG + L + V ++ G + D +
Sbjct: 2 YKGQSGMWSWLLHRVTGLGLLLFLFIHVVDISLLSFGPTVYNDGILLFDHVIVRFLSLAV 61
Query: 77 TWAVIHHMLGGIRYLIWDV---SLCLDKKIATQMAKINIIASILTVLIV 122
AV +H G+R ++ D L K + II S + V
Sbjct: 62 VGAVFYHAFNGVRIIMIDFWRKGARLQKPLFYTALGATIIVSAVFAYFV 110
>gi|83716544|ref|YP_438860.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia thailandensis E264]
gi|257141947|ref|ZP_05590209.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia thailandensis E264]
gi|83650369|gb|ABC34433.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia thailandensis E264]
Length = 122
Score = 37.0 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T SV+ + T +++ WFF + + ++ F+ ++ +H G+R
Sbjct: 27 RVTASVMAIYTVILLVWFFTARDF--SYEGWASIFATQWMKLATFVTLLSLFYHAWVGVR 84
Query: 90 YLIWD 94
+ D
Sbjct: 85 DIWMD 89
>gi|299134758|ref|ZP_07027950.1| succinate dehydrogenase cytochrome b subunit [Afipia sp. 1NLS2]
gi|298590568|gb|EFI50771.1| succinate dehydrogenase cytochrome b subunit [Afipia sp. 1NLS2]
Length = 115
Score = 36.6 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 24/62 (38%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+HR++G + + P+ NG L S + + + A+ HM G
Sbjct: 18 LHRLSGVALAIFLPMHFLALGTALNGAGALDSFLALTHSRIALIAEWGLVSALAVHMALG 77
Query: 88 IR 89
+R
Sbjct: 78 LR 79
>gi|119897841|ref|YP_933054.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Azoarcus sp. BH72]
gi|119670254|emb|CAL94167.1| probable succinate dehydrogenase, hydrophobic membrane anchor
subunit [Azoarcus sp. BH72]
Length = 114
Score = 36.6 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 27 IVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLG 86
I R T V++ VVF + E + S+ + + FL+ +V +H
Sbjct: 16 IAQRAT--AVFMAIYTVVFAICALTLPELSYSAWSGLFSNGLMKFASFLFFLSVFYHAWI 73
Query: 87 GIRYLIWD 94
G+R + D
Sbjct: 74 GVRDIWMD 81
>gi|294340932|emb|CAZ89327.1| putative Succinate dehydrogenase hydrophobic membrane anchor
protein (sdhD) [Thiomonas sp. 3As]
Length = 121
Score = 36.6 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T +V+ + T V++ +F G + ++ F+ A+I+H+ G+R
Sbjct: 26 RVTAAVIAVFTLVLLVYFLAP--GPLSFERWHDLFAQQWMKLLTFVTVLALIYHVWVGMR 83
Query: 90 YLIWD 94
+ D
Sbjct: 84 DIWMD 88
>gi|167566430|ref|ZP_02359346.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia oklahomensis EO147]
gi|167573541|ref|ZP_02366415.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia oklahomensis C6786]
Length = 122
Score = 36.6 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T +V+ + T +++ WFF + + ++ F+ ++ +H G+R
Sbjct: 27 RVTATVMAIYTVILLVWFFTARDF--SYEGWASIFATQWMKLATFVTLLSLFYHAWVGVR 84
Query: 90 YLIWD 94
+ D
Sbjct: 85 DIWMD 89
>gi|126444145|ref|YP_001063465.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei 668]
gi|126223636|gb|ABN87141.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei 668]
Length = 122
Score = 36.6 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T SV+ + T +++ W F + + ++ F+ ++ +H G+R
Sbjct: 27 RVTASVMAIYTVILLVWLFIARDF--SYEGWASIFATQWMKLATFVTLLSLFYHAWVGVR 84
Query: 90 YLIWD 94
+ D
Sbjct: 85 DIWMD 89
>gi|113868592|ref|YP_727081.1| succinate dehydrogenase (hydrophobic anchor subunit) [Ralstonia
eutropha H16]
gi|33320237|gb|AAQ05855.1| SdhD protein [Cupriavidus necator]
gi|113527368|emb|CAJ93713.1| succinate dehydrogenase (hydrophobic anchor subunit) [Ralstonia
eutropha H16]
Length = 121
Score = 36.6 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T ++ + T V+ F + + + + ++ FL ++++H G+R
Sbjct: 26 RVTAVIMVVFTVVLAIAF--LLSNGASYEAWAGLFSNQWMKIITFLTILSLLYHAWIGVR 83
Query: 90 YLIWD 94
+ D
Sbjct: 84 DIWMD 88
>gi|53716138|ref|YP_106307.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia mallei ATCC 23344]
gi|53722740|ref|YP_111725.1| succinate dehydrogenase [Burkholderia pseudomallei K96243]
gi|67642754|ref|ZP_00441506.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia mallei GB8 horse 4]
gi|76817271|ref|YP_335951.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia pseudomallei 1710b]
gi|121597322|ref|YP_991216.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia mallei SAVP1]
gi|124382804|ref|YP_001025627.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia mallei NCTC 10229]
gi|126445800|ref|YP_001077701.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia mallei NCTC 10247]
gi|126458135|ref|YP_001076366.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei 1106a]
gi|167000016|ref|ZP_02265843.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia mallei PRL-20]
gi|167724523|ref|ZP_02407759.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei DM98]
gi|167743481|ref|ZP_02416255.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei 14]
gi|167820667|ref|ZP_02452347.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei 91]
gi|167829027|ref|ZP_02460498.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei 9]
gi|167850503|ref|ZP_02476011.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei B7210]
gi|167899098|ref|ZP_02486499.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei 7894]
gi|167907443|ref|ZP_02494648.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei NCTC 13177]
gi|167915781|ref|ZP_02502872.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei 112]
gi|167923620|ref|ZP_02510711.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei BCC215]
gi|217422123|ref|ZP_03453626.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei 576]
gi|226195689|ref|ZP_03791276.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei Pakistan 9]
gi|237509002|ref|ZP_04521717.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia pseudomallei MSHR346]
gi|242313245|ref|ZP_04812262.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei 1106b]
gi|254175975|ref|ZP_04882633.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia mallei ATCC 10399]
gi|254184976|ref|ZP_04891565.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei 1655]
gi|254186203|ref|ZP_04892721.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei Pasteur 52237]
gi|254194328|ref|ZP_04900760.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei S13]
gi|254203288|ref|ZP_04909649.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia mallei FMH]
gi|254205167|ref|ZP_04911520.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia mallei JHU]
gi|254262820|ref|ZP_04953685.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei 1710a]
gi|254301257|ref|ZP_04968701.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei 406e]
gi|254359293|ref|ZP_04975565.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia mallei 2002721280]
gi|52213154|emb|CAH39193.1| putative succinate dehydrogenase [Burkholderia pseudomallei
K96243]
gi|52422108|gb|AAU45678.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia mallei ATCC 23344]
gi|76581744|gb|ABA51218.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia pseudomallei 1710b]
gi|121225120|gb|ABM48651.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia mallei SAVP1]
gi|126231903|gb|ABN95316.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei 1106a]
gi|126238654|gb|ABO01766.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia mallei NCTC 10247]
gi|147745527|gb|EDK52606.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia mallei FMH]
gi|147754753|gb|EDK61817.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia mallei JHU]
gi|148028480|gb|EDK86440.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia mallei 2002721280]
gi|157811301|gb|EDO88471.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei 406e]
gi|157933889|gb|EDO89559.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei Pasteur 52237]
gi|160697017|gb|EDP86987.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia mallei ATCC 10399]
gi|169651079|gb|EDS83772.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei S13]
gi|184215568|gb|EDU12549.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei 1655]
gi|217394354|gb|EEC34373.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei 576]
gi|225932174|gb|EEH28174.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei Pakistan 9]
gi|235001207|gb|EEP50631.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia pseudomallei MSHR346]
gi|238523945|gb|EEP87380.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia mallei GB8 horse 4]
gi|242136484|gb|EES22887.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei 1106b]
gi|243063969|gb|EES46155.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia mallei PRL-20]
gi|254213822|gb|EET03207.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei 1710a]
gi|261826987|gb|ABM99623.2| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia mallei NCTC 10229]
Length = 122
Score = 36.6 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T SV+ + T +++ WFF + + ++ F+ ++ +H G+R
Sbjct: 27 RVTASVMAIYTVILLVWFFIARDF--SYEGWASIFATQWMKLATFVTLLSLFYHAWVGVR 84
Query: 90 YLIWD 94
+ D
Sbjct: 85 DIWMD 89
>gi|170702917|ref|ZP_02893758.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia ambifaria IOP40-10]
gi|170132176|gb|EDT00663.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia ambifaria IOP40-10]
Length = 122
Score = 36.2 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 10/65 (15%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T +++ + T +++ FF + + ++ F+ ++ +H G+R
Sbjct: 27 RVTAAIMAVYTVILLALFFGAHDF--SYEGWASIFSAQWMKLATFVTLLSLFYHAWVGVR 84
Query: 90 YLIWD 94
+ D
Sbjct: 85 DIWMD 89
>gi|73542010|ref|YP_296530.1| succinate dehydrogenase subunit D [Ralstonia eutropha JMP134]
gi|72119423|gb|AAZ61686.1| succinate dehydrogenase subunit D [Ralstonia eutropha JMP134]
Length = 121
Score = 36.2 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 10/65 (15%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T ++ + T ++ F + + + + ++ FL ++++H G+R
Sbjct: 26 RVTAVIMVVFTVILAIAF--LLSNGASYEAWAGLFSNQWMKIITFLTILSLLYHAWIGVR 83
Query: 90 YLIWD 94
+ D
Sbjct: 84 DIWMD 88
>gi|118353890|ref|XP_001010210.1| ABC transporter family protein [Tetrahymena thermophila]
gi|89291977|gb|EAR89965.1| ABC transporter family protein [Tetrahymena thermophila SB210]
Length = 1384
Score = 36.2 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 37 YLGTPVVVFWFFCIA-----NGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYL 91
+ P+ +F FF A +L D S ++ F +A ++ +L GI+Y+
Sbjct: 791 FFLFPLWLFIFFACAECAFTTFNRSLGYYNDTADDSKKKLFGFWIGFAFLYMLLNGIKYM 850
Query: 92 IWDVSL 97
I +
Sbjct: 851 ILSFGI 856
>gi|296136776|ref|YP_003644018.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Thiomonas intermedia K12]
gi|295796898|gb|ADG31688.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Thiomonas intermedia K12]
Length = 121
Score = 36.2 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T +V+ + T V++ +F G + ++ F+ A+ +H+ G+R
Sbjct: 26 RVTAAVIAVFTLVLLVYFLAP--GPLSYERWHDLFAQQWMKLLTFVTVLALTYHVWVGMR 83
Query: 90 YLIWD 94
+ D
Sbjct: 84 DIWMD 88
>gi|134278534|ref|ZP_01765248.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei 305]
gi|134250318|gb|EBA50398.1| succinate dehydrogenase, hydrophobic membrane anchor subunit
[Burkholderia pseudomallei 305]
Length = 122
Score = 35.8 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T SV+ + T +++ WFF + + ++ F+ ++ +H G+R
Sbjct: 27 RVTASVMAIYTVILLVWFFIARDF--SYEGWASIFATRWMKLATFVTLLSLFYHAWVGVR 84
Query: 90 YLIWD 94
+ D
Sbjct: 85 DIWMD 89
>gi|289582773|ref|YP_003481239.1| succinate dehydrogenase, cytochrome b556 subunit [Natrialba magadii
ATCC 43099]
gi|289532326|gb|ADD06677.1| succinate dehydrogenase, cytochrome b556 subunit [Natrialba magadii
ATCC 43099]
Length = 143
Score = 35.8 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 15/112 (13%)
Query: 23 MFVSIVHRITGSVV---YLGTPVVVFWFFCIANG----------EHTLSSLRCYMDGSVF 69
M+ I H+ TG ++ V+ A+G + +L+ +
Sbjct: 23 MWAWIFHKFTGWMLIGYLFTHIAVLSSAIAAADGQTMMLAGEQVDAYTGTLQGLESLFIV 82
Query: 70 EVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
V + H+L GIR L+ D+ + L + + +++ + + +
Sbjct: 83 RVLEVGLLAVAVFHILNGIRLLMVDLGVGLTAQ--DKSFYASLVLTGVITVA 132
>gi|309380088|emb|CBX21499.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 113
Score = 35.8 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+ R T ++ + T ++ F + S+ + + + +V + AV H G
Sbjct: 18 MQRATAVIMLIYTVALLVVLFAL---PKEYSAWQAFFSQTWVKVFTQVSFLAVFLHAWVG 74
Query: 88 IRYLIWDVSLCLDKKIATQMAKINIIASILT 118
IR L D ++ Q+A I +A L
Sbjct: 75 IRDLWMDYIKPFGVRLFLQVATIVWLAGCLV 105
>gi|194290223|ref|YP_002006130.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556
with sdhc [Cupriavidus taiwanensis LMG 19424]
gi|193224058|emb|CAQ70067.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556
with SdhC [Cupriavidus taiwanensis LMG 19424]
Length = 121
Score = 35.8 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T V+ + T ++ F + + + + ++ FL ++++H G+R
Sbjct: 26 RVTAVVMVVFTVILAIAF--LLSNGASYEAWAGLFANQWMKIITFLTILSLLYHAWIGVR 83
Query: 90 YLIWD 94
+ D
Sbjct: 84 DIWMD 88
>gi|78062998|ref|YP_372906.1| succinate dehydrogenase subunit D [Burkholderia sp. 383]
gi|77970883|gb|ABB12262.1| succinate dehydrogenase subunit D [Burkholderia sp. 383]
Length = 122
Score = 35.8 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
RIT +++ + T +++ FF + + ++ F+ ++ +H G+R
Sbjct: 27 RITATIMAVYTVILLVLFFGAHDF--SYEGWASIFAAQWMKLATFVMLLSLFYHAWVGVR 84
Query: 90 YLIWD 94
+ D
Sbjct: 85 DIWMD 89
>gi|299066397|emb|CBJ37582.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556
with SdhC [Ralstonia solanacearum CMR15]
Length = 121
Score = 35.8 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T ++ + T V++ F + + S ++ FL ++ +H G+R
Sbjct: 26 RVTAVIMAVYTVVLLAAFLFSK--DTSYQSWAGLFANQWMKLLTFLAFLSLTYHAWIGVR 83
Query: 90 YLIWD 94
+ D
Sbjct: 84 DIWMD 88
>gi|206889944|ref|YP_002248615.1| succinate dehydrogenase membrane subunit, putative
[Thermodesulfovibrio yellowstonii DSM 11347]
gi|206741882|gb|ACI20939.1| succinate dehydrogenase membrane subunit, putative
[Thermodesulfovibrio yellowstonii DSM 11347]
Length = 104
Score = 35.8 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 8/61 (13%), Positives = 30/61 (49%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+HRITG ++ +G + + ++ +++ + +++ ++ ++ ++H G
Sbjct: 6 LHRITGVILVVGLLYHFILMHFMGHDNYSYNAVMQRLSEPSWKIFNIVFLFSALYHGFYG 65
Query: 88 I 88
+
Sbjct: 66 L 66
>gi|115358063|ref|YP_775201.1| succinate dehydrogenase, cytochrome b subunit [Burkholderia
ambifaria AMMD]
gi|171316068|ref|ZP_02905294.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia ambifaria MEX-5]
gi|172062860|ref|YP_001810511.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia ambifaria MC40-6]
gi|115283351|gb|ABI88867.1| succinate dehydrogenase subunit D [Burkholderia ambifaria AMMD]
gi|171098770|gb|EDT43563.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia ambifaria MEX-5]
gi|171995377|gb|ACB66295.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia ambifaria MC40-6]
Length = 122
Score = 35.4 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 10/65 (15%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T +++ + T +++ FF + + ++ F+ ++ +H G+R
Sbjct: 27 RVTATIMAVYTVILLALFFGAHDF--SYEGWASIFSAQWMKLATFVTLLSLFYHAWVGVR 84
Query: 90 YLIWD 94
+ D
Sbjct: 85 DIWMD 89
>gi|17546714|ref|NP_520116.1| transmembrane succinate dehydrogenase (hydrophobic membrane
anchor subunit) oxidoreductase [Ralstonia solanacearum
GMI1000]
gi|17429013|emb|CAD15697.1| putative transmembrane succinate dehydrogenase (hydrophobic
membrane anchor subunit) oxidoreductase protein
[Ralstonia solanacearum GMI1000]
Length = 121
Score = 35.4 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T ++ + T V++ F + + S ++ FL ++ +H G+R
Sbjct: 26 RVTAVIMAVYTIVLLAAFLFSK--DTSYQSWAGLFANQWMKLLTFLAFLSLTYHAWIGVR 83
Query: 90 YLIWD 94
+ D
Sbjct: 84 DIWMD 88
>gi|114571386|ref|YP_758066.1| succinate dehydrogenase subunit D [Maricaulis maris MCS10]
gi|114341848|gb|ABI67128.1| succinate dehydrogenase subunit D [Maricaulis maris MCS10]
Length = 123
Score = 35.4 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 4/100 (4%)
Query: 27 IVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLG 86
IVHR+T ++ PV V+ +S + + L A + HM
Sbjct: 25 IVHRVTSIALFFLAPVFVWMLAKSG----APASAAEFFSSPAGAIITLLTLTAGLSHMRL 80
Query: 87 GIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIK 126
G++ +I D K +A + + V ++K
Sbjct: 81 GMQVIIEDYVHKHGTKTLLMLANTFLTLGLWLVTAFALLK 120
>gi|71004526|ref|XP_756929.1| hypothetical protein UM00782.1 [Ustilago maydis 521]
gi|46095921|gb|EAK81154.1| hypothetical protein UM00782.1 [Ustilago maydis 521]
Length = 990
Score = 35.4 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 6 NNRPLSPHLQIYRLIPTMFVSIVHRIT 32
RP SPHL + S HR +
Sbjct: 920 KRRPRSPHLHLI-PPVPSKCSFAHRNS 945
>gi|225023988|ref|ZP_03713180.1| hypothetical protein EIKCOROL_00855 [Eikenella corrodens ATCC
23834]
gi|224943013|gb|EEG24222.1| hypothetical protein EIKCOROL_00855 [Eikenella corrodens ATCC
23834]
Length = 115
Score = 35.4 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+ R T ++ + T ++ + + ++ + + + +V + A+ H G
Sbjct: 20 MQRATAVLMLIYTVALIVFLLAL---PGDYAAWQAFFGQTWVKVFTQISFIALFLHAWVG 76
Query: 88 IRYLIWDVSLCLDKKIATQMAKINIIASILT 118
IR L D ++ Q+A I +A +
Sbjct: 77 IRDLWMDYIKPFGLRLFLQVATIVWLAGCMV 107
>gi|294671246|ref|ZP_06736099.1| hypothetical protein NEIELOOT_02956 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307074|gb|EFE48317.1| hypothetical protein NEIELOOT_02956 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 114
Score = 35.4 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
RIT ++ + V + +A G S + + + +V A++ H GIR
Sbjct: 20 RITAVIMIIYAVVFFLFLLGMA-GAEDYSQWQAFFGKTWVKVFTQTTLIALLLHAWVGIR 78
Query: 90 YLIWDVSLCLDKKIATQMAKINIIA 114
L D ++ A I +
Sbjct: 79 DLWMDYVKPFGLRLTLHCATIVWLV 103
>gi|56551465|ref|YP_162304.1| succinate dehydrogenase, cytochrome b subunit [Zymomonas mobilis
subsp. mobilis ZM4]
gi|241761113|ref|ZP_04759202.1| succinate dehydrogenase, cytochrome b subunit [Zymomonas mobilis
subsp. mobilis ATCC 10988]
gi|56543039|gb|AAV89193.1| succinate dehydrogenase, cytochrome b subunit [Zymomonas mobilis
subsp. mobilis ZM4]
gi|241374732|gb|EER64193.1| succinate dehydrogenase, cytochrome b subunit [Zymomonas mobilis
subsp. mobilis ATCC 10988]
Length = 141
Score = 35.4 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 28/75 (37%), Gaps = 13/75 (17%)
Query: 28 VHRITG-SVVYLGTPVVVFWFFCIANGEHTLSSL------------RCYMDGSVFEVCLF 74
+HR+T ++ ++G P+ W ++ + + + +
Sbjct: 26 LHRLTALAIAFIGFPLFTLWLLAVSTSPENYALFWHYIIHSPDKNSFAFSVNIISRIIGV 85
Query: 75 LYTWAVIHHMLGGIR 89
+ TW +H++ IR
Sbjct: 86 MLTWCFFYHVMSVIR 100
>gi|83748082|ref|ZP_00945111.1| Succinate dehydrogenase membrane anchor subunit [Ralstonia
solanacearum UW551]
gi|207723906|ref|YP_002254304.1| transmembrane succinate dehydrogenase (hydrophobic membrane
anchor protein subunit) [Ralstonia solanacearum MolK2]
gi|207742802|ref|YP_002259194.1| transmembrane succinate dehydrogenase (hydrophobic membrane
anchor protein subunit) [Ralstonia solanacearum
IPO1609]
gi|300703705|ref|YP_003745307.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556
with sdhc [Ralstonia solanacearum CFBP2957]
gi|83725268|gb|EAP72417.1| Succinate dehydrogenase membrane anchor subunit [Ralstonia
solanacearum UW551]
gi|206589112|emb|CAQ36074.1| transmembrane succinate dehydrogenase (hydrophobic membrane
anchor protein subunit) [Ralstonia solanacearum MolK2]
gi|206594196|emb|CAQ61123.1| transmembrane succinate dehydrogenase (hydrophobic membrane
anchor protein subunit) [Ralstonia solanacearum
IPO1609]
gi|299071368|emb|CBJ42687.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556
with SdhC [Ralstonia solanacearum CFBP2957]
Length = 121
Score = 35.4 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T V+ + T V++ F + + S ++ FL ++ +H G+R
Sbjct: 26 RVTAVVMAVYTIVLLAAFLFSK--DTSYQSWAGLFANQWMKLLTFLAFLSLTYHAWIGVR 83
Query: 90 YLIWD 94
+ D
Sbjct: 84 DIWMD 88
>gi|260752923|ref|YP_003225816.1| hypothetical protein Za10_0685 [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|258552286|gb|ACV75232.1| hypothetical protein Za10_0685 [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 141
Score = 35.0 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 28/75 (37%), Gaps = 13/75 (17%)
Query: 28 VHRITG-SVVYLGTPVVVFWFFCIANGEHTLSSL------------RCYMDGSVFEVCLF 74
+HR+T ++ ++G P+ W ++ + + + +
Sbjct: 26 LHRLTALAIAFIGFPLFTLWLLAVSTSPENYALFWHYIIHSSDKNSFAFSVNIISRIIGV 85
Query: 75 LYTWAVIHHMLGGIR 89
+ TW +H++ IR
Sbjct: 86 MLTWCFFYHVMSVIR 100
>gi|300691092|ref|YP_003752087.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556
with SdhC [Ralstonia solanacearum PSI07]
gi|299078152|emb|CBJ50795.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556
with SdhC [Ralstonia solanacearum PSI07]
Length = 121
Score = 35.0 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T V+ + T V++ F + + S ++ F+ ++ +H G+R
Sbjct: 26 RVTAVVMAVYTVVLLVAFLLSK--DTSYQSWAGLFANQWMKLLTFVAFLSLTYHAWIGVR 83
Query: 90 YLIWD 94
+ D
Sbjct: 84 DIWMD 88
>gi|134293106|ref|YP_001116842.1| succinate dehydrogenase subunit D [Burkholderia vietnamiensis G4]
gi|161521190|ref|YP_001584617.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia multivorans ATCC 17616]
gi|161522865|ref|YP_001585794.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia multivorans ATCC 17616]
gi|189348300|ref|YP_001941496.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Burkholderia multivorans ATCC 17616]
gi|189352634|ref|YP_001948261.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Burkholderia multivorans ATCC 17616]
gi|221196967|ref|ZP_03570014.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia multivorans CGD2M]
gi|221203640|ref|ZP_03576658.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia multivorans CGD2]
gi|221212431|ref|ZP_03585408.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia multivorans CGD1]
gi|254253641|ref|ZP_04946958.1| Succinate dehydrogenase cytochrome b subunit [Burkholderia dolosa
AUO158]
gi|124898286|gb|EAY70129.1| Succinate dehydrogenase cytochrome b subunit [Burkholderia dolosa
AUO158]
gi|134136263|gb|ABO57377.1| succinate dehydrogenase subunit D [Burkholderia vietnamiensis G4]
gi|160345240|gb|ABX18325.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia multivorans ATCC 17616]
gi|160346418|gb|ABX19502.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia multivorans ATCC 17616]
gi|189336656|dbj|BAG45725.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Burkholderia multivorans ATCC 17616]
gi|189338438|dbj|BAG47506.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Burkholderia multivorans ATCC 17616]
gi|221167530|gb|EED99999.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia multivorans CGD1]
gi|221175806|gb|EEE08235.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia multivorans CGD2]
gi|221183521|gb|EEE15921.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia multivorans CGD2M]
gi|325525108|gb|EGD02999.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia sp. TJI49]
Length = 122
Score = 35.0 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 10/65 (15%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T +++ + T +++ FF + + ++ F+ ++ +H G+R
Sbjct: 27 RVTATIMAVYTVILLVLFFGAHDF--SYEGWASIFSAQWMKLATFVTLLSLFYHAWVGVR 84
Query: 90 YLIWD 94
+ D
Sbjct: 85 DIWMD 89
>gi|258564857|ref|XP_002583173.1| chitin synthase 2 [Uncinocarpus reesii 1704]
gi|237906874|gb|EEP81275.1| chitin synthase 2 [Uncinocarpus reesii 1704]
Length = 1090
Score = 35.0 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Query: 26 SIVHRITGSV---VYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIH 82
SI+ G V +YL T V F + N + L M G + + T+A I+
Sbjct: 588 SIL----GVVFEWLYLATLVTCF-ILALGNRPQGSNKLYLTMTGFWV-IIMIYLTFAAIY 641
Query: 83 HMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDIV 129
+ I++ + D I + ++I S+L+ ++W++ I+
Sbjct: 642 VTVKSIQHEVADGQFSFS-AIFKNLQFFSMIVSLLSTYVLWLLASIL 687
>gi|13541576|ref|NP_111264.1| succinate dehydrogenase, subunit C [Thermoplasma volcanium GSS1]
gi|14324972|dbj|BAB59898.1| succinate dehydrogenase cytochrome b subunit [Thermoplasma
volcanium GSS1]
Length = 140
Score = 35.0 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
Query: 17 YRLIPTMFVSIVHRITGSV----VYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSV--FE 70
YR F +HRI+G V +YL V+ NG + G F
Sbjct: 19 YRKGWDYFAFTMHRISGIVILFYLYLHYIVLSNLLHPGPNGIDYNKIVTSITVGPYDSFL 78
Query: 71 VCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIA 104
V FL + +H G+R + + + L+K A
Sbjct: 79 VLDFLLALVIFYHGANGVRLALNEFGIGLNKNKA 112
>gi|167583943|ref|ZP_02376331.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia ubonensis Bu]
Length = 122
Score = 35.0 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 10/65 (15%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T +++ + T +++ FF + + ++ F+ ++ +H G+R
Sbjct: 27 RVTAAIMAVYTIILLVLFFGAHDF--SYEGWASIFAAQWMKLATFVTLLSLFYHAWIGVR 84
Query: 90 YLIWD 94
+ D
Sbjct: 85 DIWMD 89
>gi|107026776|ref|YP_624287.1| succinate dehydrogenase, cytochrome b subunit [Burkholderia
cenocepacia AU 1054]
gi|116692032|ref|YP_837565.1| succinate dehydrogenase, cytochrome b subunit [Burkholderia
cenocepacia HI2424]
gi|170735975|ref|YP_001777235.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia cenocepacia MC0-3]
gi|206562823|ref|YP_002233586.1| putative succinate dehydrogenase hydrophobic membrane anchor
protein [Burkholderia cenocepacia J2315]
gi|105896150|gb|ABF79314.1| succinate dehydrogenase subunit D [Burkholderia cenocepacia AU
1054]
gi|116650032|gb|ABK10672.1| succinate dehydrogenase subunit D [Burkholderia cenocepacia
HI2424]
gi|169818163|gb|ACA92745.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Burkholderia cenocepacia MC0-3]
gi|198038863|emb|CAR54825.1| putative succinate dehydrogenase hydrophobic membrane anchor
protein [Burkholderia cenocepacia J2315]
Length = 122
Score = 35.0 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 10/65 (15%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T +++ + T +++ FF + + ++ F+ ++ +H G+R
Sbjct: 27 RVTATIMAVYTVILLVLFFGAHDF--SYEGWASIFAAQWMKLATFVMLLSLFYHAWVGVR 84
Query: 90 YLIWD 94
+ D
Sbjct: 85 DIWMD 89
>gi|187926534|ref|YP_001892879.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Ralstonia pickettii 12J]
gi|187929229|ref|YP_001899716.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Ralstonia pickettii 12J]
gi|241666045|ref|YP_002984404.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Ralstonia pickettii 12D]
gi|309783486|ref|ZP_07678187.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Ralstonia sp. 5_7_47FAA]
gi|187726119|gb|ACD27284.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Ralstonia pickettii 12J]
gi|187728288|gb|ACD29452.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Ralstonia pickettii 12J]
gi|240868072|gb|ACS65732.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Ralstonia pickettii 12D]
gi|308917744|gb|EFP63440.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Ralstonia sp. 5_7_47FAA]
Length = 121
Score = 35.0 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T ++ + T V++ F + + S ++ FL ++ +H G+R
Sbjct: 26 RVTAVIMAVYTVVLLAAFLLSK--DTSYQSWAGLFSNQWMKMLTFLAFVSLTYHAWIGVR 83
Query: 90 YLIWD 94
+ D
Sbjct: 84 DIWMD 88
>gi|261401136|ref|ZP_05987261.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Neisseria lactamica ATCC 23970]
gi|269208914|gb|EEZ75369.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Neisseria lactamica ATCC 23970]
Length = 113
Score = 34.6 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+ R T ++ + T ++ F + S+ + + + +V + AV H G
Sbjct: 18 MQRATAVIMLIYTVALLVVLFTL---PKEYSAWQAFFSQTWVKVFTQVSFLAVFLHAWVG 74
Query: 88 IRYLIWDVSLCLDKKIATQMAKINIIASILT 118
IR L D ++ Q+A I +A L
Sbjct: 75 IRDLWMDYIKPFGVRLFLQVATIVWLAGCLV 105
>gi|239814436|ref|YP_002943346.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Variovorax paradoxus S110]
gi|239801013|gb|ACS18080.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Variovorax paradoxus S110]
Length = 121
Score = 34.6 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
RITG ++ L T +++ G +V F ++++H+ G+R
Sbjct: 25 RITGGLMALFTIILLAQLIFT-RGPIGYDLWAGIFAAQWMKVLTFCVIASLLYHVWVGMR 83
Query: 90 YLIWD 94
+ D
Sbjct: 84 DVWMD 88
>gi|300770583|ref|ZP_07080462.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33861]
gi|300763059|gb|EFK59876.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33861]
Length = 368
Score = 34.6 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 10/92 (10%)
Query: 36 VYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV 95
V +G + F +G + L + SV LF W + + RY++
Sbjct: 30 VSIGATIFFTGLFAALSGGYALYFVFSGNPLSVVYAILFGLIWGLA--IFNLDRYIV--- 84
Query: 96 SLCLDKKIATQMAKINI--IASILTVLIVWII 125
L K + IL ++V ++
Sbjct: 85 ---LSIDKTKGSGKQFLQAFPRILLAILVGVV 113
>gi|241663420|ref|YP_002981780.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Ralstonia pickettii 12D]
gi|240865447|gb|ACS63108.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Ralstonia pickettii 12D]
Length = 121
Score = 34.6 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T ++ + T V++ F + + S ++ FL ++ +H G+R
Sbjct: 26 RVTAVIMAVYTIVLLAAFLLSK--DTSYQSWAGLFSNQWMKMLTFLAFVSLTYHAWIGVR 83
Query: 90 YLIWD 94
+ D
Sbjct: 84 DIWMD 88
>gi|220906434|ref|YP_002481745.1| apolipoprotein N-acyltransferase [Cyanothece sp. PCC 7425]
gi|219863045|gb|ACL43384.1| apolipoprotein N-acyltransferase [Cyanothece sp. PCC 7425]
Length = 523
Score = 34.6 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
Query: 31 ITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRY 90
I G + L TP + W +R G +F + W + +H + +R+
Sbjct: 8 IAGMAMGLATPPLPLWGLAWIALAPLWVMVRQ-ARGRIFLAMKWGTLWGMAYHGVA-LRW 65
Query: 91 LI-WDVSLCLDKKIATQMAKINIIASILTVLIVW 123
LI W L A + I+ S T +I+W
Sbjct: 66 LIGW---HPLTWLGINWWASLAIVLSAFTAVILW 96
>gi|160946265|ref|ZP_02093476.1| hypothetical protein PEPMIC_00227 [Parvimonas micra ATCC 33270]
gi|158447788|gb|EDP24783.1| hypothetical protein PEPMIC_00227 [Parvimonas micra ATCC 33270]
Length = 421
Score = 34.6 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 13/92 (14%), Positives = 23/92 (25%), Gaps = 16/92 (17%)
Query: 37 YLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVS 96
+G + F L + + V + L T
Sbjct: 87 LVGLGIFSFPLLVPIFVIAILCFVIWIVFSVVGLLIS-LLTLPFSF-------------- 131
Query: 97 LCLDKKIATQMAKINIIASILTVLIVWIIKDI 128
+ + I+ IL + WIIK +
Sbjct: 132 -IFNPESIITWGWKVIVFIILVYIFAWIIKGL 162
>gi|227539077|ref|ZP_03969126.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33300]
gi|227241081|gb|EEI91096.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33300]
Length = 368
Score = 34.6 bits (79), Expect = 4.3, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 10/92 (10%)
Query: 36 VYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDV 95
V +G + F +G + L + SV LF W + + RY++
Sbjct: 30 VSIGATIFFTGLFAALSGGYALYFVFSGNPLSVVYAILFGLIWGLA--IFNLDRYIV--- 84
Query: 96 SLCLDKKIATQMAKINI--IASILTVLIVWII 125
L K + IL ++V ++
Sbjct: 85 ---LSIDKTKGSGKQFLQAFPRILLAILVGVV 113
>gi|119720030|ref|YP_920525.1| putative succinate dehydrogenase cytochrome b subunit [Thermofilum
pendens Hrk 5]
gi|119525150|gb|ABL78522.1| succinate dehydrogenase subunit D [Thermofilum pendens Hrk 5]
Length = 114
Score = 34.3 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 17/101 (16%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 31 ITGSVVYLGTP--VVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGI 88
+TG+V+ L +V A+G T + + + + + ++ +H L G+
Sbjct: 15 VTGAVLALAVSAHIVRVHLLGSAHGIPTYEEVLAALKNPLVMLGELVLAFSATYHALYGL 74
Query: 89 RYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDIV 129
+++ S L ++ + + ++ ++ L WI+ V
Sbjct: 75 -HMVLVESKLLSEEKSRK-----VLTALGIALATWIVAFNV 109
>gi|229061542|ref|ZP_04198886.1| hypothetical protein bcere0026_36270 [Bacillus cereus AH603]
gi|228717776|gb|EEL69426.1| hypothetical protein bcere0026_36270 [Bacillus cereus AH603]
Length = 1014
Score = 34.3 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 3/112 (2%)
Query: 20 IPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLS--SLRCYMDGSVFEVCLFLYT 77
P + +I +T + +G + + F T + S+ + +
Sbjct: 147 HPALAAAITTIVTAIGILIGAGMALGPIFITLASYATYAGLSIGAVSATFFGYTAIIIGV 206
Query: 78 WAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDIV 129
A + ++ GI++L WD + I + + I +L L ++ V
Sbjct: 207 TAALVGLVVGIKHL-WDNNEGFRNSITNVIESVRIFGEVLASLGKYLFTTAV 257
>gi|218768033|ref|YP_002342545.1| putative succinate dehydrogenase hydrophobic membrane anchor
protein [Neisseria meningitidis Z2491]
gi|121052041|emb|CAM08350.1| putative succinate dehydrogenase hydrophobic membrane anchor
protein [Neisseria meningitidis Z2491]
Length = 113
Score = 34.3 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+ R T ++ + T ++ F + S+ + + + +V + AV H G
Sbjct: 18 MQRATAVIMLIYTVALLVVLFAL---PKEYSAWQAFFSQTWVKVFTQVSFIAVFLHAWVG 74
Query: 88 IRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
IR L D ++ Q+A I + L I
Sbjct: 75 IRDLWMDYIKPFGVRLFLQVATIVWLVGCLVYSI 108
>gi|111025608|ref|YP_708028.1| succinate dehydrogenase cytochrome b subunit [Rhodococcus jostii
RHA1]
gi|110824587|gb|ABG99870.1| succinate dehydrogenase cytochrome b subunit [Rhodococcus jostii
RHA1]
Length = 167
Score = 34.3 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 11/105 (10%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
HRITG ++ + + A + V V +A++ H L G
Sbjct: 64 THRITGIAIFAFLVLHIVDVSLFAVSSSLYDDVHELYGSPVMRVFECGLLFALLFHALNG 123
Query: 88 IRYL---IWDVSLCLDKKIATQMAKINIIASILTVLIVWIIKDIV 129
+R + +WDV K+AT++ + + T L+V + IV
Sbjct: 124 LRLVAIDVWDVGA----KVATRL----LTGVVATTLVVALAGSIV 160
>gi|3273344|dbj|BAA31214.1| fumarate reductase cytochrome b small subunit [Rhodoferax
fermentans]
Length = 121
Score = 34.3 bits (78), Expect = 6.1, Method: Composition-based stats.
Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T ++ L T +++ G + + F+ ++ +H+ G+R
Sbjct: 25 RVTAVILALFTVLLLAQVIFSK-GPISYELWAGIFAAQWMKTLTFVVFLSLFYHVWVGMR 83
Query: 90 YLIWD 94
+ D
Sbjct: 84 NIFMD 88
>gi|313668608|ref|YP_004048892.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria lactamica ST-640]
gi|313006070|emb|CBN87531.1| putative succinate dehydrogenase hydrophobic membrane anchor
protein [Neisseria lactamica 020-06]
Length = 108
Score = 34.3 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+ R T ++ + T ++ F + S+ + + + +V + AV H G
Sbjct: 13 MQRATAVIMLIYTVALLVVLFTL---PKEYSAWQAFFSQTWVKVFTQVSFLAVFLHAWVG 69
Query: 88 IRYLIWDVSLCLDKKIATQMAKINIIASILT 118
IR L D ++ Q+A I +A L
Sbjct: 70 IRDLWMDYIKPFGVRLFLQVATIVWLAGCLV 100
>gi|299135400|ref|ZP_07028590.1| hypothetical protein AfiDRAFT_3720 [Afipia sp. 1NLS2]
gi|298589808|gb|EFI50013.1| hypothetical protein AfiDRAFT_3720 [Afipia sp. 1NLS2]
Length = 84
Score = 33.9 bits (77), Expect = 6.7, Method: Composition-based stats.
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 86 GGIRYLIWDVSLCLDKKIATQMAKIN 111
GGI +L+WD I
Sbjct: 15 GGIHHLVWDTVRGFKLCDIYTSGWIV 40
>gi|145588944|ref|YP_001155541.1| succinate dehydrogenase, cytochrome b subunit [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145047350|gb|ABP33977.1| succinate dehydrogenase subunit D [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 121
Score = 33.9 bits (77), Expect = 6.8, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 27 IVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLG 86
I+ R+T V+ + T V++ G T ++ L ++ +H
Sbjct: 23 IIQRVTAIVMVVFTIVLL--VDYCITGSATYEGWSSLFSNQFMKLLTLLAFISLFYHAWI 80
Query: 87 GIRYLIWD 94
GIR + D
Sbjct: 81 GIRDIWMD 88
>gi|59801318|ref|YP_208030.1| putative succinate dehydrogenase hydrophobic membrane anchor
protein [Neisseria gonorrhoeae FA 1090]
gi|194098443|ref|YP_002001502.1| Succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae NCCP11945]
gi|239998842|ref|ZP_04718766.1| Succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae 35/02]
gi|240014243|ref|ZP_04721156.1| Succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae DGI18]
gi|240016679|ref|ZP_04723219.1| Succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae FA6140]
gi|240080868|ref|ZP_04725411.1| Succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae FA19]
gi|240112768|ref|ZP_04727258.1| Succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae MS11]
gi|240117814|ref|ZP_04731876.1| Succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae PID1]
gi|240121806|ref|ZP_04734768.1| Succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae PID24-1]
gi|240123369|ref|ZP_04736325.1| Succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae PID332]
gi|240125617|ref|ZP_04738503.1| Succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae SK-92-679]
gi|240128073|ref|ZP_04740734.1| Succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae SK-93-1035]
gi|254493628|ref|ZP_05106799.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae 1291]
gi|260440670|ref|ZP_05794486.1| Succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae DGI2]
gi|268594685|ref|ZP_06128852.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae 35/02]
gi|268596985|ref|ZP_06131152.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae FA19]
gi|268598836|ref|ZP_06133003.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae MS11]
gi|268603514|ref|ZP_06137681.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae PID1]
gi|268681994|ref|ZP_06148856.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae PID332]
gi|268684206|ref|ZP_06151068.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae SK-92-679]
gi|268686462|ref|ZP_06153324.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae SK-93-1035]
gi|291043979|ref|ZP_06569695.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae DGI2]
gi|293399178|ref|ZP_06643343.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Neisseria gonorrhoeae F62]
gi|59718213|gb|AAW89618.1| putative succinate dehydrogenase hydrophobic membrane anchor
protein [Neisseria gonorrhoeae FA 1090]
gi|193933733|gb|ACF29557.1| Succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae NCCP11945]
gi|226512668|gb|EEH62013.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae 1291]
gi|268548074|gb|EEZ43492.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae 35/02]
gi|268550773|gb|EEZ45792.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae FA19]
gi|268582967|gb|EEZ47643.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae MS11]
gi|268587645|gb|EEZ52321.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae PID1]
gi|268622278|gb|EEZ54678.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae PID332]
gi|268624490|gb|EEZ56890.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae SK-92-679]
gi|268626746|gb|EEZ59146.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae SK-93-1035]
gi|291012442|gb|EFE04431.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae DGI2]
gi|291610592|gb|EFF39702.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Neisseria gonorrhoeae F62]
gi|317164129|gb|ADV07670.1| putative succinate dehydrogenase hydrophobic membrane anchor
protein [Neisseria gonorrhoeae TCDC-NG08107]
Length = 113
Score = 33.9 bits (77), Expect = 6.8, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 27 IVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLG 86
++ R T ++ + T ++ F + + + + + +V + AV H
Sbjct: 17 VMQRATAVIMLIYTVALLVVLFAL---PKEYPAWQAFFSQAWVKVFTQVSFIAVFLHAWV 73
Query: 87 GIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
GIR L D ++ Q+A I + L
Sbjct: 74 GIRDLWMDYIKPFGVRLFLQVATIVWLVGCLV 105
>gi|319943669|ref|ZP_08017950.1| succinate dehydrogenase cytochrome b small subunit [Lautropia
mirabilis ATCC 51599]
gi|319742902|gb|EFV95308.1| succinate dehydrogenase cytochrome b small subunit [Lautropia
mirabilis ATCC 51599]
Length = 116
Score = 33.9 bits (77), Expect = 7.0, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
RITG ++ L T ++ + + S G +V + A+I+H GIR
Sbjct: 21 RITGLIMALYTIFLLCSVCTLPQLD--YISWSQLFQGQFMKVATMVAVLALIYHAWVGIR 78
Query: 90 YLIWDVSLCLDKKIATQMAKINIIA--SILTVLIVW 123
L D ++ ++ + ++ + I+W
Sbjct: 79 DLYMDYLKNTLVRLVLEVGTLVLLTGYAFWAAFILW 114
>gi|296314765|ref|ZP_06864706.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Neisseria polysaccharea ATCC 43768]
gi|296838409|gb|EFH22347.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Neisseria polysaccharea ATCC 43768]
Length = 113
Score = 33.9 bits (77), Expect = 7.0, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+ R T ++ + T ++ F + S+ + + + +V + AV H G
Sbjct: 18 MQRATAVIMLIYTVTLLVVLFAL---PKEYSAWQAFFSQTWVKVFTQVSFIAVFLHAWVG 74
Query: 88 IRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
IR L D ++ Q+A I + L I
Sbjct: 75 IRDLWMDYIKPFGVRLFLQVATIVWLVGCLVYSI 108
>gi|319792255|ref|YP_004153895.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Variovorax paradoxus EPS]
gi|315594718|gb|ADU35784.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Variovorax paradoxus EPS]
Length = 121
Score = 33.9 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
RITG ++ L T +++ G +V F ++++H+ G+R
Sbjct: 25 RITGGLMALFTVILLAQMIFT-RGPIGYDLWAGIFAAQWMKVLTFSVIVSLLYHVWVGMR 83
Query: 90 YLIWD 94
+ D
Sbjct: 84 DVWMD 88
>gi|15676842|ref|NP_273987.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Neisseria meningitidis MC58]
gi|161869862|ref|YP_001599031.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria meningitidis 053442]
gi|7226188|gb|AAF41355.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Neisseria meningitidis MC58]
gi|161595415|gb|ABX73075.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria meningitidis 053442]
gi|308389612|gb|ADO31932.1| putative succinate dehydrogenase hydrophobic membrane anchor
protein [Neisseria meningitidis alpha710]
gi|325136115|gb|EGC58724.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Neisseria meningitidis M0579]
gi|325207984|gb|ADZ03436.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Neisseria meningitidis NZ-05/33]
Length = 113
Score = 33.9 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 27 IVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLG 86
++ R T ++ + T ++ F + S+ + + + +V + AV H
Sbjct: 17 VMQRATAVIMLIYTVALLVVLFSL---PKEYSAWQAFFSQTWVKVFTQVSFIAVFLHAWV 73
Query: 87 GIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
GIR L D ++ Q+A I + L
Sbjct: 74 GIRDLWMDYIKPFGVRLFLQVATIVWLVGCLV 105
>gi|108762843|ref|YP_629332.1| succinate dehydrogenase cytochrome b558 subunit [Myxococcus xanthus
DK 1622]
gi|108466723|gb|ABF91908.1| succinate dehydrogenase cytochrome b558 subunit [Myxococcus xanthus
DK 1622]
Length = 226
Score = 33.9 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 5/104 (4%)
Query: 27 IVHRIT--GSVVYLGT---PVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVI 81
I+ RIT G + +LG ++ + + E R + V L T
Sbjct: 104 ILQRITAVGVLAFLGAHIWLAFLYPRLVLGHPEAFDDIAREMHHHAPTLVVYLLGTLGTS 163
Query: 82 HHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
+H+ G++ L ++ + + II ++ + W +
Sbjct: 164 YHLANGLQGFAMGWGLLSSERSMRKFEPVVIILFLVLTAMSWAV 207
>gi|218291129|ref|ZP_03495144.1| succinate dehydrogenase (or fumarate reductase) cytochrome b
subunit, b558 family [Alicyclobacillus acidocaldarius
LAA1]
gi|218238940|gb|EED06148.1| succinate dehydrogenase (or fumarate reductase) cytochrome b
subunit, b558 family [Alicyclobacillus acidocaldarius
LAA1]
Length = 208
Score = 33.9 bits (77), Expect = 7.4, Method: Composition-based stats.
Identities = 9/98 (9%), Positives = 35/98 (35%), Gaps = 1/98 (1%)
Query: 24 FVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHH 83
+ ++ R+TG + ++ ++ N + + + + + + + A H
Sbjct: 100 VMFVLQRVTGIITFVFIIFHLWTTRFSGNAP-SFDMVHELVTNNAYFAFMIVGVIAATFH 158
Query: 84 MLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
G+ + + ++ A + +I ++ +
Sbjct: 159 FSNGLWSFAIHWGITVGRRAQRITAWVTMIIFVVLAAV 196
>gi|33325622|gb|AAQ08313.1| MRGB3 G protein-coupled receptor [Rattus norvegicus]
Length = 247
Score = 33.9 bits (77), Expect = 7.4, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 23/57 (40%)
Query: 34 SVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRY 90
+ G P ++WF L + ++F C+ +I+ ++G IR+
Sbjct: 140 VFLLFGLPYGIYWFLLEWIEGFNYIFLCSFYSVALFLSCVNGCANPIIYFLVGAIRH 196
>gi|240115519|ref|ZP_04729581.1| Succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae PID18]
gi|268601194|ref|ZP_06135361.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae PID18]
gi|268585325|gb|EEZ50001.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria gonorrhoeae PID18]
Length = 113
Score = 33.9 bits (77), Expect = 7.6, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 27 IVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLG 86
++ R T ++ + T ++ F + + + + + +V + AV H
Sbjct: 17 VMQRATAVIMLIYTVALLVVLFAL---PKEYPAWQAFFSQTWVKVFTQVSFIAVFLHAWV 73
Query: 87 GIRYLIWDVSLCLDKKIATQMAKINIIASILT 118
GIR L D ++ Q+A I + L
Sbjct: 74 GIRDLWMDYIKPFGVRLFLQVATIVWLVGCLV 105
>gi|167042678|gb|ABZ07399.1| putative Succinate dehydrogenase cytochrome b subunit [uncultured
marine crenarchaeote HF4000_ANIW133M9]
Length = 142
Score = 33.9 bits (77), Expect = 7.7, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 29/74 (39%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+ RITG + + ++ + +G+ +S+ + + L L + H G
Sbjct: 27 LMRITGLGLLVYFIGHIYETSSLLDGKAAWNSMLELTQTTEGHIFLALVIGMCVFHTGNG 86
Query: 88 IRYLIWDVSLCLDK 101
IR +I + K
Sbjct: 87 IRLMIAEAGFGFGK 100
>gi|296010825|ref|NP_001171542.1| ubiquitin protein ligase E3 component n-recognin 2 [Rattus
norvegicus]
gi|295443879|dbj|BAJ06628.1| UBR2 [Rattus norvegicus]
Length = 1755
Score = 33.9 bits (77), Expect = 8.4, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 21/69 (30%)
Query: 23 MFVSI---VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWA 79
+S+ +HR TGS + +G H S+R + FL A
Sbjct: 1479 AILSLHKTLHRCTGSAL-----------DEAPSGWHLWRSVRA-------GILPFLKCSA 1520
Query: 80 VIHHMLGGI 88
+ H L G+
Sbjct: 1521 LFFHYLNGV 1529
>gi|217967122|ref|YP_002352628.1| uroporphyrinogen decarboxylase (URO-D) [Dictyoglomus turgidum DSM
6724]
gi|217336221|gb|ACK42014.1| Uroporphyrinogen decarboxylase (URO-D) [Dictyoglomus turgidum DSM
6724]
Length = 319
Score = 33.9 bits (77), Expect = 8.5, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 79 AVIHHMLGGIRYLIWDVSL----CLDKKIATQMAKIN 111
+I+H+ G ++LI D+ L A + +
Sbjct: 212 PLIYHICGNTKHLIEDMGKSGAWGLSLDSAVDLKWAS 248
>gi|51893776|ref|YP_076467.1| succinate dehydrogenase membrane subunit [Symbiobacterium
thermophilum IAM 14863]
gi|51857465|dbj|BAD41623.1| succinate dehydrogenase membrane subunit [Symbiobacterium
thermophilum IAM 14863]
Length = 114
Score = 33.9 bits (77), Expect = 8.5, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 27 IVHRITGSVVYLGTPV-VVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHML 85
I+HRIT ++ + + F T + + + +++ V ++H L
Sbjct: 12 ILHRITAVLLVVLVAIHFGIMHFVDPTAVITFADSQMRLQSALYLVVDSGLLVLGLYHGL 71
Query: 86 GGIRYLIWDVSLCLDKKIATQMAKINIIASILTV 119
GIR ++ D + + I + ++
Sbjct: 72 NGIRNVVLD----YWPRSGRVVGWILAVIGVVAA 101
>gi|294787719|ref|ZP_06752963.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Simonsiella muelleri ATCC 29453]
gi|294484012|gb|EFG31695.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Simonsiella muelleri ATCC 29453]
Length = 115
Score = 33.9 bits (77), Expect = 8.6, Method: Composition-based stats.
Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+ R T V+ L T + F+ + G + + + + + +V + A+ H G
Sbjct: 18 MQRATAVVMVLYTVLFFFFLLGMI-GANDYTEWQALFNKTWVKVFTQVTFIALFLHAWVG 76
Query: 88 IRYLIWDVSLCLDKKIATQMAKIN--IIASILTVLIVW 123
IR L D ++ Q A + + ++ + +W
Sbjct: 77 IRDLWMDYIKPFYLRLFLQCATVVWLVGCTVYSFFAIW 114
>gi|94311421|ref|YP_584631.1| succinate dehydrogenase subunit D [Cupriavidus metallidurans
CH34]
gi|93355273|gb|ABF09362.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556
[Cupriavidus metallidurans CH34]
Length = 121
Score = 33.5 bits (76), Expect = 8.7, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 30 RITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIR 89
R+T ++ + T V+ +A G + ++ FL +++ H G+R
Sbjct: 26 RVTAVIMVVFTVVLAA--VYLAFGNPSYEGWSGLFANQWMKILTFLTILSLLFHAWIGVR 83
Query: 90 YLIWD 94
+ D
Sbjct: 84 DIWMD 88
>gi|325130093|gb|EGC52878.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Neisseria meningitidis OX99.30304]
Length = 113
Score = 33.5 bits (76), Expect = 8.9, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+ R T ++ + T ++ F + S+ + + + +V + AV H G
Sbjct: 18 MQRATAVIMLIYTVALLVVLFSL---PKEYSAWQAFFSQTWVKVFTQVSFIAVFLHAWVG 74
Query: 88 IRYLIWDVSLCLDKKIATQMAKINIIASILT 118
IR L D ++ Q+A I + L
Sbjct: 75 IRDLWMDYIKPFGVRLFLQVATIVWLVGCLV 105
>gi|81294292|gb|AAI07935.1| LOC363188 protein [Rattus norvegicus]
Length = 291
Score = 33.5 bits (76), Expect = 8.9, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 21/69 (30%)
Query: 23 MFVSI---VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWA 79
+S+ +HR TGS + +G H S+R + FL A
Sbjct: 15 AILSLHKTLHRCTGSAL-----------DEAPSGWHLWRSVRA-------GILPFLKCSA 56
Query: 80 VIHHMLGGI 88
+ H L G+
Sbjct: 57 LFFHYLNGV 65
>gi|284162934|ref|YP_003401557.1| hypothetical protein Arcpr_1841 [Archaeoglobus profundus DSM 5631]
gi|284012931|gb|ADB58884.1| hypothetical protein Arcpr_1841 [Archaeoglobus profundus DSM 5631]
Length = 106
Score = 33.5 bits (76), Expect = 9.2, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+HRITG ++ + + + + + GE ++L F L I+H + G
Sbjct: 10 LHRITGVILAIYLCIHLVFIGTVKTGE--YANLIKITLSKEFLPLDLLLFLVGIYHGVNG 67
Query: 88 IRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
IR ++ + L + K + A+ + LI+W+
Sbjct: 68 IRLILHEFGLLY------RYRKALLYATPIITLIIWVF 99
>gi|254804832|ref|YP_003083053.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria meningitidis alpha14]
gi|254668374|emb|CBA05464.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria meningitidis alpha14]
gi|254671328|emb|CBA08734.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria meningitidis alpha153]
gi|254672873|emb|CBA07132.1| succinate dehydrogenase hydrophobic membrane anchor protein
[Neisseria meningitidis alpha275]
gi|261392703|emb|CAX50276.1| succinate dehydrogenase membrane anchor protein [Neisseria
meningitidis 8013]
gi|316985352|gb|EFV64301.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Neisseria meningitidis H44/76]
gi|319410282|emb|CBY90624.1| succinate dehydrogenase membrane anchor protein [Neisseria
meningitidis WUE 2594]
gi|325128092|gb|EGC50987.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Neisseria meningitidis N1568]
gi|325132168|gb|EGC54864.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Neisseria meningitidis M6190]
gi|325134134|gb|EGC56786.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Neisseria meningitidis M13399]
gi|325138100|gb|EGC60673.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Neisseria meningitidis ES14902]
gi|325140161|gb|EGC62688.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Neisseria meningitidis CU385]
gi|325142229|gb|EGC64647.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Neisseria meningitidis 961-5945]
gi|325144259|gb|EGC66564.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Neisseria meningitidis M01-240013]
gi|325200366|gb|ADY95821.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Neisseria meningitidis H44/76]
gi|325204021|gb|ADY99474.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Neisseria meningitidis M01-240355]
gi|325206220|gb|ADZ01673.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Neisseria meningitidis M04-240196]
Length = 113
Score = 33.5 bits (76), Expect = 9.7, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
Query: 28 VHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGG 87
+ R T ++ + T ++ F + S+ + + + +V + AV H G
Sbjct: 18 MQRATAVIMLIYTVALLVVLFSL---PKEYSAWQAFFSQTWVKVFTQVSFIAVFLHAWVG 74
Query: 88 IRYLIWDVSLCLDKKIATQMAKINIIASILTVLI 121
IR L D ++ Q+A I + L I
Sbjct: 75 IRDLWMDYIKPFGVRLFLQVATIVWLVGCLVYSI 108
>gi|239982188|ref|ZP_04704712.1| integral membrane protein [Streptomyces albus J1074]
Length = 968
Score = 33.5 bits (76), Expect = 10.0, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 9/75 (12%)
Query: 50 IANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAK 109
+A L R + L L A++H++ GG+R + A
Sbjct: 134 VAFYAFDLPWYRFLLGFGFAAAVLSLIAAALVHYLYGGLR---------VTSPGARATGA 184
Query: 110 INIIASILTVLIVWI 124
S+L L V +
Sbjct: 185 ATGHLSVLLGLFVAL 199
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.317 0.176 0.616
Lambda K H
0.267 0.0539 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,802,310,616
Number of Sequences: 14124377
Number of extensions: 116048867
Number of successful extensions: 788256
Number of sequences better than 10.0: 3427
Number of HSP's better than 10.0 without gapping: 1970
Number of HSP's successfully gapped in prelim test: 2381
Number of HSP's that attempted gapping in prelim test: 782681
Number of HSP's gapped (non-prelim): 6249
length of query: 129
length of database: 4,842,793,630
effective HSP length: 95
effective length of query: 34
effective length of database: 3,500,977,815
effective search space: 119033245710
effective search space used: 119033245710
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.8 bits)
S2: 76 (33.5 bits)