RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781041|ref|YP_003065454.1| succinate dehydrogenase
protein, cytochrome b subunit [Candidatus Liberibacter asiaticus str.
psy62]
(129 letters)
>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate
dehydrogenase activity, cell inner membrane,
tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A
{Escherichia coli} PDB: 1nen_C* 2acz_C* 1nek_C* 2wdr_C*
2wdv_C* (C:)
Length = 129
Score = 93.4 bits (232), Expect = 8e-21
Identities = 23/126 (18%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
+ ++K RP++ LQ R T SI+HR++G + ++ ++++ +
Sbjct: 2 IRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQA 61
Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASILTV 119
M + ++ A+ +H++ GIR+++ D + + + AKI+ + +++
Sbjct: 62 SAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLS 121
Query: 120 LIVWII 125
L+ ++
Sbjct: 122 LLAGVL 127
>1zoy_C Large cytochrome binding protein, FAD-binding protein;
succinate, ubiquinone oxidoreductase, mitochondrial
respiratory complex II; HET: FAD HEM EPH UQ1; 2.40A {Sus
scrofa} PDB: 1zp0_C* (C:27-140)
Length = 114
Score = 82.5 bits (204), Expect = 2e-17
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Query: 14 LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR--CYMDGSVFEV 71
+ IYR M +SI HR TG + G + + + L + ++
Sbjct: 1 ITIYRWSLPMAMSICHRGTGIALSAGVSLFGLSALLLPGNFESHLELVKSLCLGPTLIYT 60
Query: 72 CLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
F + +++H GIR+LIWD+ L TQ + +I ++L+ + + +
Sbjct: 61 AKFGIVFPLMYHTWNGIRHLIWDLGKGLTIPQLTQSGVVVLILTVLSSVGLAAM 114
>2h88_C Succinate dehydrogenase cytochrome B, large subunit; complex
II, membrane protein, heme protein, iron sulfur protein,
oxidoreductase, redox enzyme; HET: FAD BHG HEM UNL;
1.74A {Gallus gallus} PDB: 2h89_C* 1yq3_C* 1yq4_C*
2fbw_C* (C:27-140)
Length = 114
Score = 82.5 bits (204), Expect = 2e-17
Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 2/112 (1%)
Query: 14 LQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLR--CYMDGSVFEV 71
+ IY+ M +SI HR TG + LG + + ++ + ++
Sbjct: 1 ISIYKWSLPMAMSITHRGTGVALSLGVSLFSLAALLLPEQFPHYVAVVKSLSLSPALIYS 60
Query: 72 CLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVW 123
F + + +H GIR+L+WD+ Q + +I ++L+ +
Sbjct: 61 AKFALVFPLSYHTWNGIRHLVWDMGKGFKLSQVEQSGVVVLILTLLSSAAIA 112
>2wdq_D Succinate dehydrogenase hydrophobic membrane anchor subunit;
succinate dehydrogenase activity, cell inner membrane,
tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A
{Escherichia coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D*
2wdv_D* (D:)
Length = 115
Score = 25.4 bits (56), Expect = 2.9
Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 27 IVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLG 86
I+ R T V+ L +V +F +GE T + + +V L ++++ H
Sbjct: 17 ILVRATAIVLTLYIIYMVGFF--ATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWI 74
Query: 87 GIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIVWII 125
G+ ++ D L ++ Q+ I + + + ++
Sbjct: 75 GMWQVLTDYVKPLALRLMLQLV-IVVALVVYVIYGFVVV 112
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1
CHMP4C amphipathic-helix, apoptosis, cytoplasm,
HOST-virus interaction, polymorphism; 2.02A {Homo
sapiens} PDB: 2oew_A 3c3o_A 3c3q_A (A:1-229)
Length = 229
Score = 24.6 bits (53), Expect = 5.4
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 46 WFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLG 86
W G S++ + +E L+ A + +
Sbjct: 116 WKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIA 156
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys,
thioredoxin dependant, mitochondrial, antioxidant,
oxidoreductase, redox-active center; 1.78A {Plasmodium
falciparum} (A:)
Length = 221
Score = 24.2 bits (51), Expect = 6.4
Identities = 2/29 (6%), Positives = 9/29 (31%)
Query: 37 YLGTPVVVFWFFCIANGEHTLSSLRCYMD 65
++G F+ + + + +
Sbjct: 53 FIGQKYCCLLFYPLNYTFVCPTEIIEFNK 81
>2bs2_C Quinol-fumarate reductase diheme cytochrome B subunit C;
2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem
cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella
succinogenes} (C:17-256)
Length = 240
Score = 23.8 bits (51), Expect = 9.5
Identities = 9/122 (7%), Positives = 28/122 (22%), Gaps = 5/122 (4%)
Query: 5 KNNRPLSPHLQIYRLIPTMFVSIVHRITGSV--VYLGTPVVVFWFFCIANGEHTLSSLRC 62
+ + + +TG + + G + S
Sbjct: 89 YRQYLTFKTHKDLMRHGDTTLWWIQAMTGFAMFFLGSVHLYIMMTQPQTIGPVSSSFRMV 148
Query: 63 YMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLDKKIATQMAKINIIASILTVLIV 122
+ L H G+ L + A + + ++++ ++
Sbjct: 149 SEWMWPLYLVLLFAVEL---HGSVGLYRLAVKWGWFDGETPDKTRANLKKLKTLMSAFLI 205
Query: 123 WI 124
+
Sbjct: 206 VL 207
>1st8_A Fructan 1-exohydrolase IIA; five fold beta propeller; HET:
NDG NAG MAN; 2.35A {Cichorium intybus} PDB: 2add_A*
2ade_A* 2aey_A* 2aez_A* (A:334-530)
Length = 197
Score = 23.5 bits (50), Expect = 9.8
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 44 VFWFFCIANGEHTLSSLRCYMDGSVFEV 71
+ F + SLR +D S+ E
Sbjct: 123 SYGAFVDIDPRSEEISLRNLIDHSIIES 150
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.333 0.144 0.468
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,042,188
Number of extensions: 43715
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 16
Length of query: 129
Length of database: 4,956,049
Length adjustment: 77
Effective length of query: 52
Effective length of database: 2,353,064
Effective search space: 122359328
Effective search space used: 122359328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 50 (23.3 bits)