RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781041|ref|YP_003065454.1| succinate dehydrogenase protein, cytochrome b subunit [Candidatus Liberibacter asiaticus str. psy62] (129 letters) >d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]} Length = 129 Score = 84.6 bits (209), Expect = 2e-18 Identities = 23/126 (18%), Positives = 60/126 (47%), Gaps = 1/126 (0%) Query: 1 MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60 + ++K RP++ LQ R T SI+HR++G + ++ ++++ + Sbjct: 2 IRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQA 61 Query: 61 RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASILTV 119 M + ++ A+ +H++ GIR+++ D + + + AKI+ + +++ Sbjct: 62 SAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLS 121 Query: 120 LIVWII 125 L+ ++ Sbjct: 122 LLAGVL 127 >d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]} Length = 113 Score = 25.1 bits (55), Expect = 2.0 Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 4/101 (3%) Query: 27 IVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLG 86 I+ R T + L ++ F +GE T + + +V L ++++ H Sbjct: 15 ILVRATA--IVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWI 72 Query: 87 GIRYLIWDVSLCLDKKIATQMAK--INIIASILTVLIVWII 125 G+ ++ D L ++ Q+ ++ I ++VW + Sbjct: 73 GMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV 113 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.333 0.144 0.468 Gapped Lambda K H 0.267 0.0522 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 510,530 Number of extensions: 21774 Number of successful extensions: 64 Number of sequences better than 10.0: 1 Number of HSP's gapped: 63 Number of HSP's successfully gapped: 6 Length of query: 129 Length of database: 2,407,596 Length adjustment: 76 Effective length of query: 53 Effective length of database: 1,364,116 Effective search space: 72298148 Effective search space used: 72298148 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 48 (22.7 bits)