RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781041|ref|YP_003065454.1| succinate dehydrogenase
protein, cytochrome b subunit [Candidatus Liberibacter asiaticus str.
psy62]
         (129 letters)



>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC
           {Escherichia coli [TaxId: 562]}
          Length = 129

 Score = 84.6 bits (209), Expect = 2e-18
 Identities = 23/126 (18%), Positives = 60/126 (47%), Gaps = 1/126 (0%)

Query: 1   MSSIKNNRPLSPHLQIYRLIPTMFVSIVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSL 60
           + ++K  RP++  LQ  R   T   SI+HR++G + ++   ++++      +        
Sbjct: 2   IRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQA 61

Query: 61  RCYMDGSVFEVCLFLYTWAVIHHMLGGIRYLIWDVSLCLD-KKIATQMAKINIIASILTV 119
              M     +  ++    A+ +H++ GIR+++ D     +  +   + AKI+ + +++  
Sbjct: 62  SAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLS 121

Query: 120 LIVWII 125
           L+  ++
Sbjct: 122 LLAGVL 127


>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD
           {Escherichia coli [TaxId: 562]}
          Length = 113

 Score = 25.1 bits (55), Expect = 2.0
 Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 4/101 (3%)

Query: 27  IVHRITGSVVYLGTPVVVFWFFCIANGEHTLSSLRCYMDGSVFEVCLFLYTWAVIHHMLG 86
           I+ R T   + L   ++    F   +GE T      +   +  +V   L  ++++ H   
Sbjct: 15  ILVRATA--IVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWI 72

Query: 87  GIRYLIWDVSLCLDKKIATQMAK--INIIASILTVLIVWII 125
           G+  ++ D    L  ++  Q+      ++  I   ++VW +
Sbjct: 73  GMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV 113


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.333    0.144    0.468 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 510,530
Number of extensions: 21774
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 6
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 48 (22.7 bits)