HHsearch alignment for GI: 254781042 and conserved domain: TIGR02968
>TIGR02968 succ_dehyd_anc succinate dehydrogenase, hydrophobic membrane anchor protein; InterPro: IPR014312 In Escherichia coli and many other bacteria, two small, hydrophobic, mutually homologous subunits of succinate dehydrogenase (a TCA cycle enzyme) are SdhC and SdhD. This entry is the SdhD, the hydrophobic membrane anchor protein. SdhC is apocytochrome b558, which also plays a role in anchoring the complex..
Probab=100.00 E-value=2.3e-33 Score=213.52 Aligned_cols=105 Identities=25% Similarity=0.445 Sum_probs=102.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 22108999999999999999999999999962899989999999462599999999999999998404889985127731
Q gi|254781042|r 18 AKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGLGTISISVHMQLGMQVIIEDYIHYRL 97 (130)
Q Consensus 18 a~~G~~hW~~QRiSAi~L~~l~i~~i~~~~~~~~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~lGl~~IieDYI~~~~ 97 (130)
T Consensus 1 a~~G~~dw~~QR~TAv~~~~y~~~~~~~~~~~~~~~Y~~w~~~f~~~~~~~~~~l~l~~~~~HawiGm~~v~~DYv~~~~ 80 (105)
T TIGR02968 1 ARSGLRDWLLQRVTAVVLALYTIFLIGFLLALPGATYEAWRALFAHPWMKIFTLLALLALLYHAWIGMRVVLEDYVKPEG 80 (105)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 97429999999999999999999999999955899989999998664999999999999999738726765442236379
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999999999999999
Q gi|254781042|r 98 LKIMFLFMNSCFVLLLIIFCLFSLL 122 (130)
Q Consensus 98 ~k~~~~~~~~~~~~~~~~~~i~~i~ 122 (130)
T Consensus 81 lRl~l~~~~~~~l~~~~~~~~~~lw 105 (105)
T TIGR02968 81 LRLVLQVLVILFLVAYAIWGAFILW 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999999968