HHsearch alignment for GI: 254781042 and conserved domain: pfam05328
>pfam05328 CybS CybS. This family consists of several eukaryotic succinate dehydrogenase [ubiquinone] cytochrome B small subunit, mitochondrial precursor (CybS) proteins. SDHD encodes the small subunit (cybS) of cytochrome b in succinate-ubiquinone oxidoreductase (mitochondrial complex II). Mitochondrial complex II is involved in the Krebs cycle and in the aerobic electron transport chain. It contains four proteins. The catalytic core consists of a flavoprotein and an iron-sulfur protein; these proteins are anchored to the mitochondrial inner membrane by the large subunit of cytochrome b (cybL) and cybS, which together comprise the heme-protein cytochrome b. Mutations in the SDHD gene can lead to hereditary paraganglioma, characterized by the development of benign, vascularized tumours in the head and neck.
Probab=98.79 E-value=1.7e-08 Score=69.38 Aligned_cols=66 Identities=21% Similarity=0.321 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 42210899999999999999999999999996289998999999946259999999999999999840488998512773
Q gi|254781042|r 17 SAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGLGTISISVHMQLGMQVIIEDYIHYR 96 (130)
Q Consensus 17 sa~~G~~hW~~QRiSAi~L~~l~i~~i~~~~~~~~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~lGl~~IieDYI~~~ 96 (130)
T Consensus 2 ~~~~gS~HW~~ER~~sv~LlpL~~~~~-----------------~~~~~~p~~D~~La~~l~~H~h~Gf~s~I~DYip~r 64 (107)
T pfam05328 2 NKSHGSYHWTFERILAVGLLPLTPAPF-----------------LAGSPSPVMDAILAAALLLHCHWGFQSCIIDYIPKR 64 (107)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH-----------------HHCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCHH
T ss_conf 976655102999999999998889999-----------------807997589999999999998855154786015745
Q ss_pred HHH
Q ss_conf 189
Q gi|254781042|r 97 LLK 99 (130)
Q Consensus 97 ~~k 99 (130)
T Consensus 65 ~~g 67 (107)
T pfam05328 65 VYG 67 (107)
T ss_pred HCC
T ss_conf 416