Query gi|254781042|ref|YP_003065455.1| succinate dehydrogenase hydrophobic membrane anchor [Candidatus Liberibacter asiaticus str. psy62] Match_columns 130 No_of_seqs 111 out of 586 Neff 6.7 Searched_HMMs 33803 Date Wed Jun 1 20:45:43 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781042.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2wdq_D Succinate dehydrogenas 100.0 2.8E-31 8.2E-36 201.1 13.4 113 12-124 3-115 (115) 2 >2h88_D Succinate dehydrogenas 99.0 6.4E-09 1.9E-13 71.4 10.7 78 16-112 1-78 (103) 3 >2bs2_C Quinol-fumarate reduct 98.7 4.1E-07 1.2E-11 60.9 12.4 110 19-128 104-219 (240) 4 >2wdq_C Succinate dehydrogenas 98.3 1.3E-05 3.9E-10 52.2 11.2 80 18-97 20-101 (129) 5 >1zoy_C Large cytochrome bindi 97.7 0.00025 7.4E-09 44.8 8.9 85 21-105 9-97 (114) 6 >2h88_C Succinate dehydrogenas 97.6 0.0027 8E-08 38.8 12.5 85 21-105 9-97 (114) 7 >1kf6_C Fumarate reductase 15 95.2 0.061 1.8E-06 30.9 6.1 65 18-82 17-84 (91) 8 >1kf6_D Fumarate reductase 13 91.4 0.62 1.8E-05 25.1 6.0 53 49-101 47-100 (119) 9 >1joy_A Protein (ENVZ_ecoli); 63.1 2 6.1E-05 22.1 0.3 26 1-26 19-45 (67) 10 >2c2a_A Sensor histidine kinas 46.3 4.1 0.00012 20.3 -0.4 15 1-15 27-41 (89) 11 >3a0r_A Sensor protein; four h 41.8 5.4 0.00016 19.7 -0.4 15 1-15 10-24 (65) 12 >2ahm_A Replicase NSP7, replic 33.5 18 0.00054 16.6 1.3 30 68-97 56-85 (88) 13 >2gpe_A Bifunctional protein P 23.6 24 0.00071 15.9 0.5 23 8-30 14-36 (52) 14 >2hai_A Hepatitis C virus NS5B 21.7 22 0.00065 16.1 -0.1 36 3-42 29-64 (219) 15 >3d36_A Sporulation kinase B; 21.6 19 0.00057 16.4 -0.4 14 2-15 22-35 (244) 16 >2ay0_A Bifunctional PUTA prot 21.4 28 0.00083 15.5 0.5 22 8-29 14-35 (58) No 1 >>2wdq_D Succinate dehydrogenase hydrophobic membrane anchor subunit; succinate dehydrogenase activity, cell inner membrane, tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D* 2wdv_D* (D:) Probab=99.97 E-value=2.8e-31 Score=201.13 Aligned_cols=113 Identities=22% Similarity=0.421 Sum_probs=110.8 Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 83055422108999999999999999999999999962899989999999462599999999999999998404889985 Q gi|254781042|r 12 VRGMGSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGLGTISISVHMQLGMQVIIED 91 (130) Q Consensus 12 ~rglgsa~~G~~hW~~QRiSAi~L~~l~i~~i~~~~~~~~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~lGl~~IieD 91 (130) .||+||+|+|++||+.||+||++++|+++|+++.+...++.|||++.+++++|++++++.+++.+.++|+++|+|+|+|| T Consensus 3 ~r~~~~~~~G~~~W~~qRiTav~L~~l~~~~i~~~~~~~~~~y~~~~~~~~~p~~~i~~~l~l~~~~~Ha~~G~~~iieD 82 (115) T 2wdq_D 3 SNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTD 82 (115) T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 12204556789999999999999999999999999982999999999999494999999999999999999989999999 Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 127731899999999999999999999999999 Q gi|254781042|r 92 YIHYRLLKIMFLFMNSCFVLLLIIFCLFSLLKI 124 (130) Q Consensus 92 YI~~~~~k~~~~~~~~~~~~~~~~~~i~~i~~i 124 (130) |+|+++.|...+.++++++.+.++.++++++|+ T Consensus 83 Yv~~~~~r~~~~~~~~~~~~~~~~~g~~~i~~i 115 (115) T 2wdq_D 83 YVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV 115 (115) T ss_dssp HCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTC T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 837466999999999999999999999999839 No 2 >>2h88_D Succinate dehydrogenase cytochrome B, small subunit; complex II, membrane protein, heme protein, iron sulfur protein, oxidoreductase, redox enzyme; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D* 2h89_D* 1zoy_D* 1zp0_D* (D:) Probab=98.99 E-value=6.4e-09 Score=71.42 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=61.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 54221089999999999999999999999999628999899999994625999999999999999984048899851277 Q gi|254781042|r 16 GSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGLGTISISVHMQLGMQVIIEDYIHY 95 (130) Q Consensus 16 gsa~~G~~hW~~QRiSAi~L~~l~i~~i~~~~~~~~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~lGl~~IieDYI~~ 95 (130) +|.++|+.||.++|+-|+.|+|+++.-.. .++.....++..+...|...|+|.++.|||+. T Consensus 1 a~~~~gS~HW~~ER~~sv~LlpL~p~a~~-------------------~~~pv~D~~La~~l~~H~h~G~~svI~DYvp~ 61 (103) T 2h88_D 1 GSSKAASLHWTSERAVSALLLGLLPAAYL-------------------YPGPAVDYSLAAALTLHGHWGLGQVITDYVHG 61 (103) T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHH-------------------SCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCS T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH-------------------CCCHHHHHHHHHHHHHHHHHCCCEEEECCCCC T ss_conf 99886036669999999999999999998-------------------01179999999999999985653433313576 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 31899999999999999 Q gi|254781042|r 96 RLLKIMFLFMNSCFVLL 112 (130) Q Consensus 96 ~~~k~~~~~~~~~~~~~ 112 (130) +...+...........+ T Consensus 62 ~~~~k~~~~a~~lls~~ 78 (103) T 2h88_D 62 DTPIKVANTGLYVLSAI 78 (103) T ss_dssp HHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHH T ss_conf 10469999999999999 No 3 >>2bs2_C Quinol-fumarate reductase diheme cytochrome B subunit C; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} (C:17-256) Probab=98.72 E-value=4.1e-07 Score=60.93 Aligned_cols=110 Identities=9% Similarity=0.033 Sum_probs=86.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----- Q ss_conf 2108999999999999999999999999962-8999899999994625999999999999999984048899851----- Q gi|254781042|r 19 KDGTGHFIKQRFTAIANIPFIIFFIAFFIKY-GDAPYEQIVSVLSNVAVASIMGLGTISISVHMQLGMQVIIEDY----- 92 (130) Q Consensus 19 ~~G~~hW~~QRiSAi~L~~l~i~~i~~~~~~-~~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~lGl~~IieDY----- 92 (130) +.++--|..||+|+++++++.++.++.+... ...+|+...+.+++|....+-.+.++...+|...|++..+-|+ T Consensus 104 ~~~~~~~~~q~itG~iLl~fli~Hl~~~~~~~~~~~~~~~~~~~~~p~~~~~Y~~~l~~l~~H~~~Gl~~~~~~~G~~~~ 183 (240) T 2bs2_C 104 HGDTTLWWIQAMTGFAMFFLGSVHLYIMMTQPQTIGPVSSSFRMVSEWMWPLYLVLLFAVELHGSVGLYRLAVKWGWFDG 183 (240) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCT T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 22109999999999999999999999862266778789999999581199999999999999986409999988524346 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 277318999999999999999999999999999642 Q gi|254781042|r 93 IHYRLLKIMFLFMNSCFVLLLIIFCLFSLLKIAILG 128 (130) Q Consensus 93 I~~~~~k~~~~~~~~~~~~~~~~~~i~~i~~i~l~g 128 (130) .+.+..|........++..+..+..+.++....-.| T Consensus 184 ~~~~~~r~~~~~~~~ii~~~f~~ipi~~l~g~i~~~ 219 (240) T 2bs2_C 184 ETPDKTRANLKKLKTLMSAFLIVLGLLTFGAYVKKG 219 (240) T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 531568899999999999999999999999999818 No 4 >>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate dehydrogenase activity, cell inner membrane, tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* (C:) Probab=98.31 E-value=1.3e-05 Score=52.17 Aligned_cols=80 Identities=13% Similarity=0.095 Sum_probs=68.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 221089999999999999999999999999--628999899999994625999999999999999984048899851277 Q gi|254781042|r 18 AKDGTGHFIKQRFTAIANIPFIIFFIAFFI--KYGDAPYEQIVSVLSNVAVASIMGLGTISISVHMQLGMQVIIEDYIHY 95 (130) Q Consensus 18 a~~G~~hW~~QRiSAi~L~~l~i~~i~~~~--~~~~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~lGl~~IieDYI~~ 95 (130) ..-+.--++.+|+|+++|......+.+.+. ...+.+|++..++++++..++....+..+..||...|+++.+-|.=+. T Consensus 20 ~~~~~~~SIlHRiTG~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~yH~~nGiRHL~~D~g~g 99 (129) T 2wdq_C 20 FPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYL 99 (129) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 32999999999999999999999999999997223027999999997799999999999999999998399999982300 Q ss_pred HH Q ss_conf 31 Q gi|254781042|r 96 RL 97 (130) Q Consensus 96 ~~ 97 (130) .. T Consensus 100 ~~ 101 (129) T 2wdq_C 100 EE 101 (129) T ss_dssp CC T ss_pred HH T ss_conf 34 No 5 >>1zoy_C Large cytochrome binding protein, FAD-binding protein; succinate, ubiquinone oxidoreductase, mitochondrial respiratory complex II; HET: FAD HEM EPH UQ1; 2.40A {Sus scrofa} PDB: 1zp0_C* (C:27-140) Probab=97.74 E-value=0.00025 Score=44.78 Aligned_cols=85 Identities=14% Similarity=-0.078 Sum_probs=64.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 089999999999999999999999999628--9998999999--946259999999999999999840488998512773 Q gi|254781042|r 21 GTGHFIKQRFTAIANIPFIIFFIAFFIKYG--DAPYEQIVSV--LSNVAVASIMGLGTISISVHMQLGMQVIIEDYIHYR 96 (130) Q Consensus 21 G~~hW~~QRiSAi~L~~l~i~~i~~~~~~~--~~~y~~~~~~--~~~~~~~il~~l~~~~~~~Ha~lGl~~IieDYI~~~ 96 (130) +.--++.+|+|++++......+...+.... +.+|++..++ ++++..+........+..||+..|+|+.+-|.=.+. T Consensus 9 t~~~SIlHRiTG~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yH~~nGiRHL~wD~g~g~ 88 (114) T 1zoy_C 9 PMAMSICHRGTGIALSAGVSLFGLSALLLPGNFESHLELVKSLCLGPTLIYTAKFGIVFPLMYHTWNGIRHLIWDLGKGL 88 (114) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 99999999999999998899999999996045068899999985161899999999999999999984999999801467 Q ss_pred HHHHHHHHH Q ss_conf 189999999 Q gi|254781042|r 97 LLKIMFLFM 105 (130) Q Consensus 97 ~~k~~~~~~ 105 (130) ..|..-... T Consensus 89 ~~~~~~~sg 97 (114) T 1zoy_C 89 TIPQLTQSG 97 (114) T ss_dssp SHHHHHHHH T ss_pred CHHHHHHHH T ss_conf 499999999 No 6 >>2h88_C Succinate dehydrogenase cytochrome B, large subunit; complex II, membrane protein, heme protein, iron sulfur protein, oxidoreductase, redox enzyme; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 2h89_C* 1yq3_C* 1yq4_C* 2fbw_C* (C:27-140) Probab=97.61 E-value=0.0027 Score=38.79 Aligned_cols=85 Identities=18% Similarity=-0.014 Sum_probs=64.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 089999999999999999999999999628--9998999999--946259999999999999999840488998512773 Q gi|254781042|r 21 GTGHFIKQRFTAIANIPFIIFFIAFFIKYG--DAPYEQIVSV--LSNVAVASIMGLGTISISVHMQLGMQVIIEDYIHYR 96 (130) Q Consensus 21 G~~hW~~QRiSAi~L~~l~i~~i~~~~~~~--~~~y~~~~~~--~~~~~~~il~~l~~~~~~~Ha~lGl~~IieDYI~~~ 96 (130) ..--++.+|+|++++......+...+.... +.+|++..+. .+++..+........+.+||...|+|+.+-|.=.+. T Consensus 9 t~~~SI~HRiTG~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yH~~nGiRHL~wD~g~g~ 88 (114) T 2h88_C 9 PMAMSITHRGTGVALSLGVSLFSLAALLLPEQFPHYVAVVKSLSLSPALIYSAKFALVFPLSYHTWNGIRHLVWDMGKGF 88 (114) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 89999999999999999999999999985256688998886300231999999999999999999987999999610477 Q ss_pred HHHHHHHHH Q ss_conf 189999999 Q gi|254781042|r 97 LLKIMFLFM 105 (130) Q Consensus 97 ~~k~~~~~~ 105 (130) ..|..-... T Consensus 89 ~~~~~~~tg 97 (114) T 2h88_C 89 KLSQVEQSG 97 (114) T ss_dssp SHHHHHHHH T ss_pred CHHHHHHHH T ss_conf 699999999 No 7 >>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, complex II, quinol, quinone; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} (C:1-91) Probab=95.19 E-value=0.061 Score=30.93 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=52.2 Q ss_pred CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH Q ss_conf 2210899-9999999999999999999999962--899989999999462599999999999999998 Q gi|254781042|r 18 AKDGTGH-FIKQRFTAIANIPFIIFFIAFFIKY--GDAPYEQIVSVLSNVAVASIMGLGTISISVHMQ 82 (130) Q Consensus 18 a~~G~~h-W~~QRiSAi~L~~l~i~~i~~~~~~--~~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~ 82 (130) .|++-.. ....-.|++..+.+.+.+++-...+ .+.+++.+.++.+||+.-++-++.+.++++|+. T Consensus 17 ~k~~FYr~YMlRE~T~v~~~~f~lvLl~Gl~~L~~g~~aw~~f~~fl~nPivi~lniiaL~a~L~H~~ 84 (91) T 1kf6_C 17 KKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHTK 84 (91) T ss_dssp GSSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHH T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH T ss_conf 55848999999998589999999999999999806888999999998385999999999999999999 No 8 >>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, complex II, quinol, quinone; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} (D:) Probab=91.36 E-value=0.62 Score=25.09 Aligned_cols=53 Identities=15% Similarity=0.046 Sum_probs=45.5 Q ss_pred CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHH Q ss_conf 28999899999994625999999999999999984048899851-277318999 Q gi|254781042|r 49 YGDAPYEQIVSVLSNVAVASIMGLGTISISVHMQLGMQVIIEDY-IHYRLLKIM 101 (130) Q Consensus 49 ~~~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~lGl~~IieDY-I~~~~~k~~ 101 (130) .+..|||.+.+|-+++..+......+..-+||+-=-+..-.-|- +|.+..|.. T Consensus 47 ~~a~sy~~i~aFa~s~iG~l~ll~~i~lplWh~~HRihHglHDlkih~~~g~~~ 100 (119) T 1kf6_D 47 GDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWV 100 (119) T ss_dssp TTTTSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCHH T ss_conf 663589999999860899999999999999999999998775420004763147 No 9 >>1joy_A Protein (ENVZ_ecoli); histidine kinase, sensory transduction, osmolarity sensor protein, inner membrane, phosphorylation, transferase; NMR {Escherichia coli} (A:) Probab=63.14 E-value=2 Score=22.09 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=17.7 Q ss_pred CCCCHHHHHHHHHHC-CCCCCHHHHHH Q ss_conf 986033348998305-54221089999 Q gi|254781042|r 1 MDFDMRSSLGRVRGM-GSAKDGTGHFI 26 (130) Q Consensus 1 m~~~~~t~~~~~rgl-gsa~~G~~hW~ 26 (130) ++||+|||+..++|. .....+...++ T Consensus 19 isHeLrtPL~~i~~~~e~l~~~~~~~l 45 (67) T 1joy_A 19 VSHDLRTPLTRIRLATEMMSEQDGYLA 45 (67) T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTHHH T ss_pred HHHHHCCHHHHHHHHHHHHHCCCHHHH T ss_conf 517614648888879987023579999 No 10 >>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} (A:1-89) Probab=46.29 E-value=4.1 Score=20.34 Aligned_cols=15 Identities=13% Similarity=0.521 Sum_probs=11.4 Q ss_pred CCCCHHHHHHHHHHC Q ss_conf 986033348998305 Q gi|254781042|r 1 MDFDMRSSLGRVRGM 15 (130) Q Consensus 1 m~~~~~t~~~~~rgl 15 (130) ++||+|||+..+.|. T Consensus 27 vsHelrtPL~~i~~~ 41 (89) T 2c2a_A 27 ISHELRTPLTAIKAY 41 (89) T ss_dssp HHHHTHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 799982899999999 No 11 >>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transferase, two-component regulatory system; 3.80A {Thermotoga maritima} (A:130-194) Probab=41.79 E-value=5.4 Score=19.66 Aligned_cols=15 Identities=13% Similarity=0.490 Sum_probs=11.5 Q ss_pred CCCCHHHHHHHHHHC Q ss_conf 986033348998305 Q gi|254781042|r 1 MDFDMRSSLGRVRGM 15 (130) Q Consensus 1 m~~~~~t~~~~~rgl 15 (130) |+||+|||+..++|. T Consensus 10 isHelrtPL~~I~~~ 24 (65) T 3a0r_A 10 VAHEIRNPITIIGGF 24 (65) T ss_dssp HHHHHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHH T ss_conf 243333131499999 No 12 >>2ahm_A Replicase NSP7, replicase polyprotein 1AB, light chain; SARS-COV, non-structural protein, super-complex, hexadecamer, viral protein; 2.40A {Sars coronavirus} (A:) Probab=33.51 E-value=18 Score=16.59 Aligned_cols=30 Identities=13% Similarity=0.302 Sum_probs=24.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHH Q ss_conf 999999999999998404889985127731 Q gi|254781042|r 68 SIMGLGTISISVHMQLGMQVIIEDYIHYRL 97 (130) Q Consensus 68 il~~l~~~~~~~Ha~lGl~~IieDYI~~~~ 97 (130) -+..++.+....|+..++.+..|||+.+.. T Consensus 56 ~Ll~Ll~~lls~~~~~dl~el~d~~~~~~s 85 (88) T 2ahm_A 56 KMVSLLSVLLSMQGAVDINRLCEEMLDNRA 85 (88) T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC------- T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHCCCC T ss_conf 999999999806544898999999965453 No 13 >>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabolism, proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A* (A:) Probab=23.61 E-value=24 Score=15.88 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=19.6 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH Q ss_conf 48998305542210899999999 Q gi|254781042|r 8 SLGRVRGMGSAKDGTGHFIKQRF 30 (130) Q Consensus 8 ~~~~~rglgsa~~G~~hW~~QRi 30 (130) -..|++.++..++-+.||+.-.. T Consensus 14 ~r~Rik~lA~~~~RtpHWLikqA 36 (52) T 2gpe_A 14 TRERIKSAATRIDRTPHWLIKQA 36 (52) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHHH T ss_conf 99999999986289878999999 No 14 >>2hai_A Hepatitis C virus NS5B RNA polymerase; HCV RNA polymerase, transferase; HET: CME PFI; 1.58A {Hepatitis c virus} PDB: 1os5_A* 3frz_A* 2d3z_A* 2d3u_A* 2d41_A* 2gc8_A* 1quv_A* 2qe2_A* 2qe5_A* 3e51_A* 3bsa_A* 3bsc_A* 3br9_A* 3co9_A* 3cvk_A* 3cwj_A* 3d28_A* 3d5m_A* 3cde_A* 2zku_A ... (A:358-576) Probab=21.68 E-value=22 Score=16.11 Aligned_cols=36 Identities=11% Similarity=0.071 Sum_probs=26.4 Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6033348998305542210899999999999999999999 Q gi|254781042|r 3 FDMRSSLGRVRGMGSAKDGTGHFIKQRFTAIANIPFIIFF 42 (130) Q Consensus 3 ~~~~t~~~~~rglgsa~~G~~hW~~QRiSAi~L~~l~i~~ 42 (130) -|++||++|+---.+-|+.+.-|+= -+++.+=++|. T Consensus 29 rDp~tPLaRaawEtarh~PvnSwLG----nIimyapt~wV 64 (219) T 2hai_A 29 RDPTTPLARAAWETARHTPVNSWLG----NIIMYAPTLWA 64 (219) T ss_dssp CCSHHHHHHHHHHHHSCCSBCHHHH----HHHHTTTSHHH T ss_pred CCCCCCHHHHHHHCCCCCCHHHHHH----HHHHHCCHHHC T ss_conf 5888456764421358786999999----99860523404 No 15 >>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} (A:) Probab=21.55 E-value=19 Score=16.44 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=11.9 Q ss_pred CCCHHHHHHHHHHC Q ss_conf 86033348998305 Q gi|254781042|r 2 DFDMRSSLGRVRGM 15 (130) Q Consensus 2 ~~~~~t~~~~~rgl 15 (130) +||+|||+..++|. T Consensus 22 sHelrtPL~~i~~~ 35 (244) T 3d36_A 22 SHEIRNPLTAARGF 35 (244) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99986899999999 No 16 >>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabolism, proline utilization A, DNA binding protein; 2.10A {Escherichia coli} (A:) Probab=21.42 E-value=28 Score=15.48 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.3 Q ss_pred HHHHHHHCCCCCCHHHHHHHHH Q ss_conf 4899830554221089999999 Q gi|254781042|r 8 SLGRVRGMGSAKDGTGHFIKQR 29 (130) Q Consensus 8 ~~~~~rglgsa~~G~~hW~~QR 29 (130) -..|++.++..++-+.||+.-. T Consensus 14 ~r~Rik~lA~~~~RtpHWLikq 35 (58) T 2ay0_A 14 TRERIKSAATRIDRTPHWLIKQ 35 (58) T ss_dssp HHHHHHHHHHHTTCCHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHH T ss_conf 9999999999858997699999 Done!