Query gi|254781042|ref|YP_003065455.1| succinate dehydrogenase hydrophobic membrane anchor [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 130
No_of_seqs 111 out of 586
Neff 6.7
Searched_HMMs 23785
Date Wed Jun 1 01:18:12 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781042.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wdq_D Succinate dehydrogenase 100.0 5E-31 2.1E-35 198.8 13.4 112 11-124 4-115 (115)
2 2h88_D Succinate dehydrogenase 99.8 6.4E-21 2.7E-25 140.1 10.1 79 16-113 1-79 (103)
3 2bs2_C Quinol-fumarate reducta 98.9 6.5E-08 2.7E-12 64.7 13.3 110 19-128 120-235 (256)
4 2wdq_C Succinate dehydrogenase 98.1 5.3E-05 2.2E-09 47.8 11.0 72 25-96 27-100 (129)
5 1zoy_C Large cytochrome bindin 97.2 0.0095 4E-07 34.7 12.9 77 25-102 39-120 (140)
6 2h88_C Succinate dehydrogenase 97.2 0.0099 4.1E-07 34.6 13.7 78 26-104 40-122 (140)
7 1kf6_C Fumarate reductase 15 k 94.9 0.06 2.5E-06 30.1 6.1 66 18-83 17-85 (130)
8 1kf6_D Fumarate reductase 13 k 91.6 0.4 1.7E-05 25.3 6.0 51 49-99 47-98 (119)
9 1joy_A Protein (ENVZ_ecoli); h 44.2 4.5 0.00019 19.2 0.3 14 2-15 20-33 (67)
10 2gpe_A Bifunctional protein PU 23.4 17 0.00072 15.8 0.5 22 8-29 14-35 (52)
11 2ahm_A Replicase NSP7, replica 22.9 26 0.0011 14.8 1.3 30 68-97 56-85 (88)
12 2c2a_A Sensor histidine kinase 22.6 12 0.00052 16.7 -0.4 15 1-15 27-41 (258)
13 3jz3_A Sensor protein QSEC; he 21.8 16 0.00066 16.1 0.0 15 1-15 9-23 (222)
No 1
>2wdq_D Succinate dehydrogenase hydrophobic membrane anchor subunit; succinate dehydrogenase activity, cell inner membrane, tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D* 2wdv_D* 2wp9_D* 2wu2_D* 2ws3_D* 2wu5_D*
Probab=99.97 E-value=5e-31 Score=198.76 Aligned_cols=112 Identities=23% Similarity=0.463 Sum_probs=106.7
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98305542210899999999999999999999999996289998999999946259999999999999999840488998
Q gi|254781042|r 11 RVRGMGSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGLGTISISVHMQLGMQVIIE 90 (130)
Q Consensus 11 ~~rglgsa~~G~~hW~~QRiSAi~L~~l~i~~i~~~~~~~~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~lGl~~Iie 90 (130)
+++++| |+|++||+.||+||++++|+.+|+++++...++.|||++.+|+++|+|++++.++++++++|+++|+|+|+|
T Consensus 4 ~~~~~~--~sG~~~W~~qRiSAv~l~~l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~i~~~l~~~~~~~Ha~lGl~~Iie 81 (115)
T 2wdq_D 4 NASALG--RNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLT 81 (115)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 132455--678999999999999999999999999998399999999999948599999999999999999971656789
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5127731899999999999999999999999999
Q gi|254781042|r 91 DYIHYRLLKIMFLFMNSCFVLLLIIFCLFSLLKI 124 (130)
Q Consensus 91 DYI~~~~~k~~~~~~~~~~~~~~~~~~i~~i~~i 124 (130)
||+|+++.|..++.+.+++++++.+++++++|+|
T Consensus 82 DYi~~~~~r~~~~~~~~~~~~~~~~~~i~~lw~i 115 (115)
T 2wdq_D 82 DYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV 115 (115)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9559746999999999999999999999999729
No 2
>2h88_D Succinate dehydrogenase cytochrome B, small subunit; complex II, membrane protein, heme protein, iron sulfur protein, oxidoreductase, redox enzyme; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D* 2h89_D* 2wqy_D* 1zoy_D* 1zp0_D*
Probab=99.84 E-value=6.4e-21 Score=140.14 Aligned_cols=79 Identities=14% Similarity=0.129 Sum_probs=70.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 54221089999999999999999999999999628999899999994625999999999999999984048899851277
Q gi|254781042|r 16 GSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGLGTISISVHMQLGMQVIIEDYIHY 95 (130)
Q Consensus 16 gsa~~G~~hW~~QRiSAi~L~~l~i~~i~~~~~~~~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~lGl~~IieDYI~~ 95 (130)
||+|+|+.||+.||++|++++|+++|+++. +|+++..++.++.++|+++|+|+|||||||.
T Consensus 1 GSak~gs~HW~~eRi~AvallpL~~~~~~~-------------------~~~ild~ll~~~~~~H~~~G~q~vIeDYV~~ 61 (103)
T 2h88_D 1 GSSKAASLHWTSERAVSALLLGLLPAAYLY-------------------PGPAVDYSLAAALTLHGHWGLGQVITDYVHG 61 (103)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHS-------------------CSHHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 998751153599999999999999999991-------------------4199999999999999985768566531466
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 318999999999999999
Q gi|254781042|r 96 RLLKIMFLFMNSCFVLLL 113 (130)
Q Consensus 96 ~~~k~~~~~~~~~~~~~~ 113 (130)
+..|+.....++..+.+.
T Consensus 62 ~~~~~~~~~~~~~~s~~~ 79 (103)
T 2h88_D 62 DTPIKVANTGLYVLSAIT 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 115899999999999999
No 3
>2bs2_C Quinol-fumarate reductase diheme cytochrome B subunit C; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: f.21.2.1 PDB: 1qlb_C* 1e7p_C* 2bs3_C* 2bs4_C*
Probab=98.88 E-value=6.5e-08 Score=64.71 Aligned_cols=110 Identities=10% Similarity=0.014 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Q ss_conf 21089999999999999999999999999628-999899999994625999999999999999984048899-----851
Q gi|254781042|r 19 KDGTGHFIKQRFTAIANIPFIIFFIAFFIKYG-DAPYEQIVSVLSNVAVASIMGLGTISISVHMQLGMQVII-----EDY 92 (130)
Q Consensus 19 ~~G~~hW~~QRiSAi~L~~l~i~~i~~~~~~~-~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~lGl~~Ii-----eDY 92 (130)
+..+.-|..||+|++++.++.++.++.+...+ ..+++.....+.+|+...+-.+.+++..+|...|++.+. .|+
T Consensus 120 ~~~t~~~~~Q~itG~il~~fi~~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~v~l~~v~~H~~~Gl~~~~~~wG~~~~ 199 (256)
T 2bs2_C 120 HGDTTLWWIQAMTGFAMFFLGSVHLYIMMTQPQTIGPVSSSFRMVSEWMWPLYLVLLFAVELHGSVGLYRLAVKWGWFDG 199 (256)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 01219999999999999999999999984463556699999999485899999999999999997619999988434456
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 277318999999999999999999999999999642
Q gi|254781042|r 93 IHYRLLKIMFLFMNSCFVLLLIIFCLFSLLKIAILG 128 (130)
Q Consensus 93 I~~~~~k~~~~~~~~~~~~~~~~~~i~~i~~i~l~g 128 (130)
-.....|.........+..+..++++.+++.-.-.|
T Consensus 200 ~~~~~~R~~~~~~~~~l~~~~~~lg~~aL~~fi~~g 235 (256)
T 2bs2_C 200 ETPDKTRANLKKLKTLMSAFLIVLGLLTFGAYVKKG 235 (256)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 442467899999999999999999999999999849
No 4
>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate dehydrogenase activity, cell inner membrane, tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* 2wp9_C* 2ws3_C* 2wu5_C* 2wu2_C*
Probab=98.08 E-value=5.3e-05 Score=47.83 Aligned_cols=72 Identities=14% Similarity=0.175 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 99999999999999999999999--6289998999999946259999999999999999840488998512773
Q gi|254781042|r 25 FIKQRFTAIANIPFIIFFIAFFI--KYGDAPYEQIVSVLSNVAVASIMGLGTISISVHMQLGMQVIIEDYIHYR 96 (130)
Q Consensus 25 W~~QRiSAi~L~~l~i~~i~~~~--~~~~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~lGl~~IieDYI~~~ 96 (130)
-+.+|+|++++......+.+.+. ...+.+|++...++++++.+........+..||..-|+++.+=|.=+..
T Consensus 27 SI~HRiSGv~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yH~~nGIRHL~wD~g~~~ 100 (129)
T 2wdq_C 27 SILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLE 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999999999999999999999986576689999999844999999999999999999985999999802311
No 5
>1zoy_C Large cytochrome binding protein, FAD-binding protein; succinate, ubiquinone oxidoreductase, mitochondrial respiratory complex II; HET: FAD HEM EPH UQ1; 2.40A {Sus scrofa} PDB: 1zp0_C*
Probab=97.24 E-value=0.0095 Score=34.72 Aligned_cols=77 Identities=16% Similarity=0.018 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH-----HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 999999999999999999999996289998999999-----946259999999999999999840488998512773189
Q gi|254781042|r 25 FIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSV-----LSNVAVASIMGLGTISISVHMQLGMQVIIEDYIHYRLLK 99 (130)
Q Consensus 25 W~~QRiSAi~L~~l~i~~i~~~~~~~~~~y~~~~~~-----~~~~~~~il~~l~~~~~~~Ha~lGl~~IieDYI~~~~~k 99 (130)
=+.+|+|++++......+....... ..+++..... ++++..+........+..||..-|+++.+-|+=+....|
T Consensus 39 SI~HRiSGv~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~yH~~~GIRHLiwD~g~g~~~~ 117 (140)
T 1zoy_C 39 SICHRGTGIALSAGVSLFGLSALLL-PGNFESHLELVKSLCLGPTLIYTAKFGIVFPLMYHTWNGIRHLIWDLGKGLTIP 117 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 9999999999999999999999998-167067889999985271999999999999999999980999999623467589
Q ss_pred HHH
Q ss_conf 999
Q gi|254781042|r 100 IMF 102 (130)
Q Consensus 100 ~~~ 102 (130)
..-
T Consensus 118 ~~~ 120 (140)
T 1zoy_C 118 QLT 120 (140)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 6
>2h88_C Succinate dehydrogenase cytochrome B, large subunit; complex II, membrane protein, heme protein, iron sulfur protein, oxidoreductase, redox enzyme; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 2h89_C* 1yq3_C* 1yq4_C* 2fbw_C* 2wqy_C*
Probab=97.22 E-value=0.0099 Score=34.64 Aligned_cols=78 Identities=18% Similarity=0.048 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-----HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 999999999999999999999962899989999999-----462599999999999999998404889985127731899
Q gi|254781042|r 26 IKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVL-----SNVAVASIMGLGTISISVHMQLGMQVIIEDYIHYRLLKI 100 (130)
Q Consensus 26 ~~QRiSAi~L~~l~i~~i~~~~~~~~~~y~~~~~~~-----~~~~~~il~~l~~~~~~~Ha~lGl~~IieDYI~~~~~k~ 100 (130)
+.+|+|++++......+...+... ..++++..... +++..+...........||..-|+++.+-|+=.+..+|.
T Consensus 40 I~HRiSGv~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yH~~~GIRHL~wD~g~g~~~~~ 118 (140)
T 2h88_C 40 ITHRGTGVALSLGVSLFSLAALLL-PEQFPHYVAVVKSLSLSPALIYSAKFALVFPLSYHTWNGIRHLVWDMGKGFKLSQ 118 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 999999999999999999999998-0478999999988851459999999999999999999809999997234776999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254781042|r 101 MFLF 104 (130)
Q Consensus 101 ~~~~ 104 (130)
.-..
T Consensus 119 ~~~s 122 (140)
T 2h88_C 119 VEQS 122 (140)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 7
>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, complex II, quinol, quinone; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_C* 1l0v_C* 2b76_C* 3cir_C*
Probab=94.87 E-value=0.06 Score=30.09 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=53.0
Q ss_pred CCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 221089-999999999999999999999999628--999899999994625999999999999999984
Q gi|254781042|r 18 AKDGTG-HFIKQRFTAIANIPFIIFFIAFFIKYG--DAPYEQIVSVLSNVAVASIMGLGTISISVHMQL 83 (130)
Q Consensus 18 a~~G~~-hW~~QRiSAi~L~~l~i~~i~~~~~~~--~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~l 83 (130)
.|++-. ....--.|++-...+.+.+++-...+. +.+++.|.+|.+||..-++.++.+.++++|+.-
T Consensus 17 ~k~~FYr~YMlRE~T~v~~~~f~lvLl~Gl~~L~~g~~aw~~f~~flqnPivv~lniiaL~a~L~Ha~T 85 (130)
T 1kf6_C 17 KKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHTKT 85 (130)
T ss_dssp GSSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 558489999998984899999999999999998168889999999983859999999999999999999
No 8
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, complex II, quinol, quinone; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D*
Probab=91.57 E-value=0.4 Score=25.30 Aligned_cols=51 Identities=16% Similarity=0.049 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHH
Q ss_conf 28999899999994625999999999999999984048899851-2773189
Q gi|254781042|r 49 YGDAPYEQIVSVLSNVAVASIMGLGTISISVHMQLGMQVIIEDY-IHYRLLK 99 (130)
Q Consensus 49 ~~~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~lGl~~IieDY-I~~~~~k 99 (130)
.+..|||.+.+|-.+++.+.+....++.-+||+.=-+.....|- +|.+..|
T Consensus 47 ~~a~sy~~i~aFa~s~iG~l~ll~~i~lplWh~~HRihh~lHDlkih~~ag~ 98 (119)
T 1kf6_D 47 GDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGK 98 (119)
T ss_dssp TTTTSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCC
T ss_conf 6534899999998607999999999999999999999987754201047520
No 9
>1joy_A Protein (ENVZ_ecoli); histidine kinase, sensory transduction, osmolarity sensor protein, inner membrane, phosphorylation, transferase; NMR {Escherichia coli} SCOP: a.30.2.1
Probab=44.21 E-value=4.5 Score=19.21 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=11.7
Q ss_pred CCCHHHHHHHHHHC
Q ss_conf 86033348998305
Q gi|254781042|r 2 DFDMRSSLGRVRGM 15 (130)
Q Consensus 2 ~~~~~t~~~~~rgl 15 (130)
.||.|||+.+.+|-
T Consensus 20 SHeLRTPLt~i~~~ 33 (67)
T 1joy_A 20 SHDLRTPLTRIRLA 33 (67)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHH
T ss_conf 27625689899999
No 10
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabolism, proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=23.39 E-value=17 Score=15.84 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 4899830554221089999999
Q gi|254781042|r 8 SLGRVRGMGSAKDGTGHFIKQR 29 (130)
Q Consensus 8 ~~~~~rglgsa~~G~~hW~~QR 29 (130)
-..|++.++..++-+.||+.-.
T Consensus 14 ~r~Rlk~~A~~~~RtpHwLmkq 35 (52)
T 2gpe_A 14 TRERIKSAATRIDRTPHWLIKQ 35 (52)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9999999998648987899999
No 11
>2ahm_A Replicase NSP7, replicase polyprotein 1AB, light chain; SARS-COV, non-structural protein, super-complex, hexadecamer, viral protein; 2.40A {Sars coronavirus} SCOP: a.8.9.1 PDB: 1ysy_A 2kys_A
Probab=22.87 E-value=26 Score=14.84 Aligned_cols=30 Identities=13% Similarity=0.302 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 999999999999998404889985127731
Q gi|254781042|r 68 SIMGLGTISISVHMQLGMQVIIEDYIHYRL 97 (130)
Q Consensus 68 il~~l~~~~~~~Ha~lGl~~IieDYI~~~~ 97 (130)
-+..++.+....|+-.++...+|||..+..
T Consensus 56 ~ll~Ll~~llS~~~~~dl~~l~d~~~~~~s 85 (88)
T 2ahm_A 56 KMVSLLSVLLSMQGAVDINRLCEEMLDNRA 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
T ss_conf 999999999806545898999999864453
No 12
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=22.58 E-value=12 Score=16.66 Aligned_cols=15 Identities=13% Similarity=0.521 Sum_probs=12.0
Q ss_pred CCCCHHHHHHHHHHC
Q ss_conf 986033348998305
Q gi|254781042|r 1 MDFDMRSSLGRVRGM 15 (130)
Q Consensus 1 m~~~~~t~~~~~rgl 15 (130)
++|++|||+..++|.
T Consensus 27 isHELrtPL~~I~~~ 41 (258)
T 2c2a_A 27 ISHELRTPLTAIKAY 41 (258)
T ss_dssp HHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 799985899999999
No 13
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=21.84 E-value=16 Score=16.09 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHHHHC
Q ss_conf 986033348998305
Q gi|254781042|r 1 MDFDMRSSLGRVRGM 15 (130)
Q Consensus 1 m~~~~~t~~~~~rgl 15 (130)
++||+|||+...++.
T Consensus 9 iSHELrTPLt~I~~~ 23 (222)
T 3jz3_A 9 AAHELRSPLTALKVQ 23 (222)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999982899999999
Done!