HHSEARCH alignment of GI: 254781042 and SCOP domain: d1nekc_

Alignment

Probab=97.96  E-value=8.9e-05  Score=45.12  Aligned_cols=72  Identities=14%  Similarity=0.175  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             99999999999999999999999--6289998999999946259999999999999999840488998512773
Q gi|254781042|r   25 FIKQRFTAIANIPFIIFFIAFFI--KYGDAPYEQIVSVLSNVAVASIMGLGTISISVHMQLGMQVIIEDYIHYR   96 (130)
Q Consensus        25 W~~QRiSAi~L~~l~i~~i~~~~--~~~~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~lGl~~IieDYI~~~   96 (130)
                      .+.+|+|++++......+.+.+.  ...+.+|+.+...+++++.+........+..||..-|+++.+-|.=+..
T Consensus        27 SI~HRisGv~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yH~~nGIRHL~wD~G~g~  100 (129)
T d1nekc_          27 SILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLE  100 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             99999999999999999999999984211179999999977999999999999999999985999999743023

SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Heme-binding four-helical bundle
superfamily: Fumarate reductase respiratory complex transmembrane subunits
family: Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
domain: Succinate dehydrogenase subunit SdhC
species: Escherichia coli [TaxId: 562]