Query gi|254781042|ref|YP_003065455.1| succinate dehydrogenase hydrophobic membrane anchor [Candidatus Liberibacter asiaticus str. psy62] Match_columns 130 No_of_seqs 111 out of 586 Neff 6.7 Searched_HMMs 13730 Date Wed Jun 1 11:11:12 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781042.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1nekd_ f.21.2.2 (D:) Succinat 100.0 3.5E-31 2.5E-35 198.3 14.1 109 16-124 5-113 (113) 2 d2bs2c1 f.21.2.1 (C:1-254) Fum 98.9 4.5E-08 3.3E-12 64.2 13.2 111 19-129 120-236 (254) 3 d1nekc_ f.21.2.2 (C:) Succinat 98.0 8.9E-05 6.5E-09 45.1 11.5 72 25-96 27-100 (129) 4 d1kf6c_ f.21.2.2 (C:) Fumarate 94.7 0.042 3.1E-06 29.6 6.1 65 19-83 18-85 (130) 5 d1kf6d_ f.21.2.2 (D:) Fumarate 90.3 0.36 2.6E-05 24.2 6.0 50 49-98 47-97 (119) 6 d1joya_ a.30.2.1 (A:) EnvZ his 50.8 1.8 0.00013 20.2 0.3 16 1-16 19-34 (67) 7 d2c2aa1 a.30.2.1 (A:232-320) S 37.3 2.8 0.0002 19.0 -0.4 13 2-14 28-40 (89) 8 d2ay0a1 a.43.1.11 (A:3-45) Bif 32.5 5.4 0.0004 17.4 0.5 22 8-29 12-33 (43) 9 d1v66a_ a.140.2.1 (A:) p53 bin 17.7 27 0.0019 13.3 1.9 34 1-34 10-45 (65) 10 d3cx5c1 f.32.1.1 (C:262-385) M 12.9 36 0.0026 12.6 2.2 65 30-97 28-92 (124) No 1 >d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]} Probab=99.97 E-value=3.5e-31 Score=198.29 Aligned_cols=109 Identities=23% Similarity=0.441 Sum_probs=105.3 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 54221089999999999999999999999999628999899999994625999999999999999984048899851277 Q gi|254781042|r 16 GSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGLGTISISVHMQLGMQVIIEDYIHY 95 (130) Q Consensus 16 gsa~~G~~hW~~QRiSAi~L~~l~i~~i~~~~~~~~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~lGl~~IieDYI~~ 95 (130) +.+|+|++||+.||+||++++|+++|+++.+....+.|||++.+|+++|+|++++.+++++.++|+++|+|+|+|||+|+ T Consensus 5 ~~~rsG~~~W~~qRvSAv~l~~l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~il~~l~l~~~~~H~~lGl~~IieDYi~~ 84 (113) T d1nekd_ 5 ALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKP 84 (113) T ss_dssp SSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 36556899999999999999999999999999829999999999993949999999999999999997075668995597 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 31899999999999999999999999999 Q gi|254781042|r 96 RLLKIMFLFMNSCFVLLLIIFCLFSLLKI 124 (130) Q Consensus 96 ~~~k~~~~~~~~~~~~~~~~~~i~~i~~i 124 (130) ++.|+.++.+++++++++++++++++|+| T Consensus 85 ~~~r~~~~~~~~~~~~~~~~~~i~~lw~i 113 (113) T d1nekd_ 85 LALRLMLQLVIVVALVVYVIYGFVVVWGV 113 (113) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 46999999999999999999999999729 No 2 >d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]} Probab=98.86 E-value=4.5e-08 Score=64.24 Aligned_cols=111 Identities=10% Similarity=0.011 Sum_probs=92.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH Q ss_conf 2108999999999999999999999999962-8999899999994625999999999999999984048899-----851 Q gi|254781042|r 19 KDGTGHFIKQRFTAIANIPFIIFFIAFFIKY-GDAPYEQIVSVLSNVAVASIMGLGTISISVHMQLGMQVII-----EDY 92 (130) Q Consensus 19 ~~G~~hW~~QRiSAi~L~~l~i~~i~~~~~~-~~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~lGl~~Ii-----eDY 92 (130) +..+.-|..||+|+++++++.++.++.+... .+.+|+.....+++|+...+-.+.+++..+|...|++... .|+ T Consensus 120 ~~~t~~~~~q~~tG~ill~fi~~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~fY~l~l~av~lH~~~Gl~s~~~~wG~~~~ 199 (254) T d2bs2c1 120 HGDTTLWWIQAMTGFAMFFLGSVHLYIMMTQPQTIGPVSSSFRMVSEWMWPLYLVLLFAVELHGSVGLYRLAVKWGWFDG 199 (254) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCT T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 11249999999999999999999999997476678799999999470699999999999999988829999988730477 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 2773189999999999999999999999999996420 Q gi|254781042|r 93 IHYRLLKIMFLFMNSCFVLLLIIFCLFSLLKIAILGT 129 (130) Q Consensus 93 I~~~~~k~~~~~~~~~~~~~~~~~~i~~i~~i~l~g~ 129 (130) ..+++.|+...........+..+++..++..-...|. T Consensus 200 ~~~~~~R~~~~~~~~~l~~~~i~lG~~sl~~fv~~G~ 236 (254) T d2bs2c1 200 ETPDKTRANLKKLKTLMSAFLIVLGLLTFGAYVKKGL 236 (254) T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 5307689999999999999999999999999999480 No 3 >d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]} Probab=97.96 E-value=8.9e-05 Score=45.12 Aligned_cols=72 Identities=14% Similarity=0.175 Sum_probs=59.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 99999999999999999999999--6289998999999946259999999999999999840488998512773 Q gi|254781042|r 25 FIKQRFTAIANIPFIIFFIAFFI--KYGDAPYEQIVSVLSNVAVASIMGLGTISISVHMQLGMQVIIEDYIHYR 96 (130) Q Consensus 25 W~~QRiSAi~L~~l~i~~i~~~~--~~~~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~lGl~~IieDYI~~~ 96 (130) .+.+|+|++++......+.+.+. ...+.+|+.+...+++++.+........+..||..-|+++.+-|.=+.. T Consensus 27 SI~HRisGv~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yH~~nGIRHL~wD~G~g~ 100 (129) T d1nekc_ 27 SILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLE 100 (129) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 99999999999999999999999984211179999999977999999999999999999985999999743023 No 4 >d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]} Probab=94.66 E-value=0.042 Score=29.59 Aligned_cols=65 Identities=22% Similarity=0.165 Sum_probs=52.2 Q ss_pred CCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH Q ss_conf 21089999999-99999999999999999962--8999899999994625999999999999999984 Q gi|254781042|r 19 KDGTGHFIKQR-FTAIANIPFIIFFIAFFIKY--GDAPYEQIVSVLSNVAVASIMGLGTISISVHMQL 83 (130) Q Consensus 19 ~~G~~hW~~QR-iSAi~L~~l~i~~i~~~~~~--~~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~l 83 (130) |++-..+-+-| -|++....+.+.+++-...+ ++.+++.+.++.+||+.-++.++.+.++++|+.- T Consensus 18 k~~FYr~YMlRE~T~v~~~~f~lvLl~Gl~~L~~g~~aw~~fv~flqnP~vv~lniiaLaa~L~Ha~T 85 (130) T d1kf6c_ 18 KLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHTKT 85 (130) T ss_dssp SSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH T ss_conf 68389999998873799999999999999998058789999999971849999999999999999999 No 5 >d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]} Probab=90.35 E-value=0.36 Score=24.22 Aligned_cols=50 Identities=14% Similarity=0.028 Sum_probs=43.4 Q ss_pred CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHH Q ss_conf 28999899999994625999999999999999984048899851-277318 Q gi|254781042|r 49 YGDAPYEQIVSVLSNVAVASIMGLGTISISVHMQLGMQVIIEDY-IHYRLL 98 (130) Q Consensus 49 ~~~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~lGl~~IieDY-I~~~~~ 98 (130) .+..|||.+.+|-.+++.+.+....++.-+||+.=-+..-.-|- ||-+.. T Consensus 47 ~~a~~y~~i~aFa~s~iG~l~ll~~i~lplWh~~HRihHglHDlkih~p~g 97 (119) T d1kf6d_ 47 GDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAG 97 (119) T ss_dssp TTTTSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH T ss_conf 665689999999844799999999999999999999999886630003630 No 6 >d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Probab=50.84 E-value=1.8 Score=20.17 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=12.7 Q ss_pred CCCCHHHHHHHHHHCC Q ss_conf 9860333489983055 Q gi|254781042|r 1 MDFDMRSSLGRVRGMG 16 (130) Q Consensus 1 m~~~~~t~~~~~rglg 16 (130) ..||+|||+.+.+|-. T Consensus 19 vsHeLRTPLt~i~~~~ 34 (67) T d1joya_ 19 VSHDLRTPLTRIRLAT 34 (67) T ss_dssp THHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 4488889999999998 No 7 >d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Probab=37.35 E-value=2.8 Score=19.05 Aligned_cols=13 Identities=15% Similarity=0.542 Sum_probs=7.5 Q ss_pred CCCHHHHHHHHHH Q ss_conf 8603334899830 Q gi|254781042|r 2 DFDMRSSLGRVRG 14 (130) Q Consensus 2 ~~~~~t~~~~~rg 14 (130) +||+|||+..++| T Consensus 28 sHeLRtPL~~I~~ 40 (89) T d2c2aa1 28 SHELRTPLTAIKA 40 (89) T ss_dssp HHHTHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 6999988999999 No 8 >d2ay0a1 a.43.1.11 (A:3-45) Bifunctional protein putA {Escherichia coli [TaxId: 562]} Probab=32.55 E-value=5.4 Score=17.36 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.1 Q ss_pred HHHHHHHCCCCCCHHHHHHHHH Q ss_conf 4899830554221089999999 Q gi|254781042|r 8 SLGRVRGMGSAKDGTGHFIKQR 29 (130) Q Consensus 8 ~~~~~rglgsa~~G~~hW~~QR 29 (130) -..|++.++..++-+.||+.-. T Consensus 12 ~r~Ri~~lA~~~~RtpHWL~kq 33 (43) T d2ay0a1 12 TRERIKSAATRIDRTPHWLIKQ 33 (43) T ss_dssp HHHHHHHHHHHTTCCHHHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHH T ss_conf 9999999998638987899999 No 9 >d1v66a_ a.140.2.1 (A:) p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=17.70 E-value=27 Score=13.35 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=25.9 Q ss_pred CCCCHH-HHHHHHHH-CCCCCCHHHHHHHHHHHHHH Q ss_conf 986033-34899830-55422108999999999999 Q gi|254781042|r 1 MDFDMR-SSLGRVRG-MGSAKDGTGHFIKQRFTAIA 34 (130) Q Consensus 1 m~~~~~-t~~~~~rg-lgsa~~G~~hW~~QRiSAi~ 34 (130) |.+++| +++-..=| .|..|+|.+|=+.+|..-.+ T Consensus 10 Mv~sfRVsELQ~LLg~~gr~KsGrK~eL~~RaL~LL 45 (65) T d1v66a_ 10 MVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLL 45 (65) T ss_dssp HHTTCCHHHHHHHHHTTCCCCCSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 999970899999999839987665799999999998 No 10 >d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=12.89 E-value=36 Score=12.59 Aligned_cols=65 Identities=8% Similarity=-0.003 Sum_probs=40.6 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH Q ss_conf 99999999999999999962899989999999462599999999999999998404889985127731 Q gi|254781042|r 30 FTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGLGTISISVHMQLGMQVIIEDYIHYRL 97 (130) Q Consensus 30 iSAi~L~~l~i~~i~~~~~~~~~~y~~~~~~~~~~~~~il~~l~~~~~~~Ha~lGl~~IieDYI~~~~ 97 (130) .-+++.....+..++.+.-.+... .+..--+|..+....+++...+.=.|+|-+.+-+.|+--.. T Consensus 28 ~~Gvl~~~~si~il~~lP~l~~s~---~~s~~~rp~~k~~fw~fv~~fi~LtwlG~~p~e~p~~~~gq 92 (124) T d3cx5c1 28 LLGVITMFAAILVLLVLPFTDRSV---VRGNTFKVLSKFFFFIFVFNFVLLGQIGACHVEVPYVLMGQ 92 (124) T ss_dssp HHHHHHHHHHHHGGGGHHHHCCCS---SSSSTTCHHHHHHHHHHHHHHHHHHHHHTSCSCTTHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH T ss_conf 022588999999999999972001---42021014799999999989999998047888763889999 Done!