RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781042|ref|YP_003065455.1| succinate dehydrogenase
hydrophobic membrane anchor [Candidatus Liberibacter asiaticus str.
psy62]
         (130 letters)



>2wdq_D Succinate dehydrogenase hydrophobic membrane anchor subunit;
           succinate dehydrogenase activity, cell inner membrane,
           tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A
           {Escherichia coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D*
           2wdv_D* (D:)
          Length = 115

 Score = 84.0 bits (208), Expect = 6e-18
 Identities = 25/112 (22%), Positives = 49/112 (43%)

Query: 13  RGMGSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGL 72
                 ++G   FI  R TAI    +II+ + FF   G+  YE  +   ++        L
Sbjct: 4   NASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLL 63

Query: 73  GTISISVHMQLGMQVIIEDYIHYRLLKIMFLFMNSCFVLLLIIFCLFSLLKI 124
              SI +H  +GM  ++ DY+    L++M   +    +++ +I+    +  +
Sbjct: 64  ALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV 115


>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 29.4 bits (65), Expect = 0.18
 Identities = 17/127 (13%), Positives = 31/127 (24%), Gaps = 28/127 (22%)

Query: 10  GRVRG-MGSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAV-- 66
              R  +G ++ GTG   K   TA     F +  ++        P    ++    +A   
Sbjct: 156 NPPRNMIGQSQSGTG---K---TA----AFALTMLSRVDASVPKPQAICLAPSRELARQI 205

Query: 67  -------ASIMGLGTISISVHMQLGMQ---VIIEDYIHYRLL-----KIMFLFMNSCFVL 111
                       + T                 I       ++     + +       FVL
Sbjct: 206 MDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVL 265

Query: 112 LLIIFCL 118
                 L
Sbjct: 266 DEADNML 272


>2h88_D Succinate dehydrogenase cytochrome B, small subunit; complex
           II, membrane protein, heme protein, iron sulfur protein,
           oxidoreductase, redox enzyme; HET: FAD BHG HEM UNL;
           1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D*
           2h89_D* 1zoy_D* 1zp0_D* (D:)
          Length = 103

 Score = 28.9 bits (65), Expect = 0.26
 Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 23/109 (21%)

Query: 16  GSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGLGTI 75
           GS+K  + H+  +R  +   +   +   A+                   AV   +     
Sbjct: 1   GSSKAASLHWTSERAVSALLLG--LLPAAYLY--------------PGPAVDYSLA---A 41

Query: 76  SISVHMQLGMQVIIEDYIHYRLLKIMFLFMNSCFVLLLIIFCLFSLLKI 124
           ++++H   G+  +I DY+H      +        + +L       L   
Sbjct: 42  ALTLHGHWGLGQVITDYVHGDTPIKVANT----GLYVLSAITFTGLCYF 86


>2apj_A Putative esterase; AT4G34215, carbohydrate esterase family
           6, structural genomics, protein structure initiative,
           CESG; HET: SEB; 1.60A {Arabidopsis thaliana} (A:)
          Length = 260

 Score = 27.1 bits (59), Expect = 0.76
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 35  NIPFIIFFIAFFIKYGDAPYE-QIVSVLSNVAVASIMGLGTISISVHM 81
           ++P I   IA    Y D   E Q+   LSNV      GL   S ++H+
Sbjct: 192 SLPIIQVAIASGGGYIDKVREAQLGLKLSNVVCVDAKGLPLKSDNLHL 239


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 25.9 bits (57), Expect = 1.8
 Identities = 5/27 (18%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 65 AVASIMGLGT-ISISVHMQLGMQVIIE 90
          ++A +M + + + +  +  + MQV + 
Sbjct: 1  SLADVMSIESLVEVVFYRGMTMQVAVP 27


>1ohu_A Apoptosis regulator CED-9; BCL-2 family; 2.03A
          {Caenorhabditis elegans} (A:)
          Length = 175

 Score = 25.6 bits (56), Expect = 2.6
 Identities = 3/14 (21%), Positives = 8/14 (57%)

Query: 86 QVIIEDYIHYRLLK 99
          +  + DY  +R+ +
Sbjct: 14 EGFVVDYFTHRIRQ 27


>1zmb_A Acetylxylan esterase related enzyme; alpha-beta protein,
           structural genomics, PSI, protein structure initiative;
           2.61A {Clostridium acetobutylicum atcc 824} (A:1-248)
          Length = 248

 Score = 25.0 bits (54), Expect = 3.2
 Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 12/59 (20%)

Query: 35  NIPFIIFFIAFFIKYGDAPY------------EQIVSVLSNVAVASIMGLGTISISVHM 81
           +IP II  +  F+                   ++      N    +  GL      +H+
Sbjct: 150 DIPIIIGGLGDFLGKERFGKGCTEYNFINKELQKFAFEQDNCYFVTASGLTCNPDGIHI 208


>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled
          receptor, chromophore, glycoprotein, lipoprotein,
          membrane, palmitate phosphorylation; HET: BOG RET PLM
          TWT PC1; 2.50A {Todarodes pacificus} PDB: 2ziy_A* (A:)
          Length = 448

 Score = 25.3 bits (53), Expect = 3.4
 Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 7/47 (14%)

Query: 24 HFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIM 70
          H   + F  + +  +    I   I         I+    N  V  + 
Sbjct: 20 HPHWREFDQVPDAVYYSLGIFIGICG-------IIGCGGNGIVIYLF 59


>3fbx_A Putative phospholipase B-like 2; alpha beta, glycosylated,
           disulphide bonds, oxidized cysteine, alternative
           splicing, glycoprotein, hydrolase; HET: NAG PG4 PGE;
           2.40A {Mus musculus} (A:)
          Length = 559

 Score = 24.5 bits (53), Expect = 4.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 9   LGRVRGMGSAKDGTGHFIKQRFTAIANIPF 38
           L ++ GM    D T    K  + A  NIP+
Sbjct: 360 LEQIPGMVVVADKTAELYKTTYWASYNIPY 389


>2a5y_A Apoptosis regulator CED-9; apoptosis; HET: ATP; 2.60A
          {Caenorhabditis elegans} (A:)
          Length = 204

 Score = 24.5 bits (53), Expect = 5.3
 Identities = 3/12 (25%), Positives = 7/12 (58%)

Query: 86 QVIIEDYIHYRL 97
          +  + DY  +R+
Sbjct: 34 EGFVVDYFTHRI 45


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.337    0.149    0.436 

Gapped
Lambda     K      H
   0.267   0.0723    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 962,981
Number of extensions: 38410
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 24
Length of query: 130
Length of database: 4,956,049
Length adjustment: 77
Effective length of query: 53
Effective length of database: 2,353,064
Effective search space: 124712392
Effective search space used: 124712392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 50 (23.1 bits)