RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781042|ref|YP_003065455.1| succinate dehydrogenase hydrophobic membrane anchor [Candidatus Liberibacter asiaticus str. psy62] (130 letters) >2wdq_D Succinate dehydrogenase hydrophobic membrane anchor subunit; succinate dehydrogenase activity, cell inner membrane, tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D* 2wdv_D* (D:) Length = 115 Score = 84.0 bits (208), Expect = 6e-18 Identities = 25/112 (22%), Positives = 49/112 (43%) Query: 13 RGMGSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGL 72 ++G FI R TAI +II+ + FF G+ YE + ++ L Sbjct: 4 NASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLL 63 Query: 73 GTISISVHMQLGMQVIIEDYIHYRLLKIMFLFMNSCFVLLLIIFCLFSLLKI 124 SI +H +GM ++ DY+ L++M + +++ +I+ + + Sbjct: 64 ALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV 115 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 29.4 bits (65), Expect = 0.18 Identities = 17/127 (13%), Positives = 31/127 (24%), Gaps = 28/127 (22%) Query: 10 GRVRG-MGSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAV-- 66 R +G ++ GTG K TA F + ++ P ++ +A Sbjct: 156 NPPRNMIGQSQSGTG---K---TA----AFALTMLSRVDASVPKPQAICLAPSRELARQI 205 Query: 67 -------ASIMGLGTISISVHMQLGMQ---VIIEDYIHYRLL-----KIMFLFMNSCFVL 111 + T I ++ + + FVL Sbjct: 206 MDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVL 265 Query: 112 LLIIFCL 118 L Sbjct: 266 DEADNML 272 >2h88_D Succinate dehydrogenase cytochrome B, small subunit; complex II, membrane protein, heme protein, iron sulfur protein, oxidoreductase, redox enzyme; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D* 2h89_D* 1zoy_D* 1zp0_D* (D:) Length = 103 Score = 28.9 bits (65), Expect = 0.26 Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 23/109 (21%) Query: 16 GSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGLGTI 75 GS+K + H+ +R + + + A+ AV + Sbjct: 1 GSSKAASLHWTSERAVSALLLG--LLPAAYLY--------------PGPAVDYSLA---A 41 Query: 76 SISVHMQLGMQVIIEDYIHYRLLKIMFLFMNSCFVLLLIIFCLFSLLKI 124 ++++H G+ +I DY+H + + +L L Sbjct: 42 ALTLHGHWGLGQVITDYVHGDTPIKVANT----GLYVLSAITFTGLCYF 86 >2apj_A Putative esterase; AT4G34215, carbohydrate esterase family 6, structural genomics, protein structure initiative, CESG; HET: SEB; 1.60A {Arabidopsis thaliana} (A:) Length = 260 Score = 27.1 bits (59), Expect = 0.76 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Query: 35 NIPFIIFFIAFFIKYGDAPYE-QIVSVLSNVAVASIMGLGTISISVHM 81 ++P I IA Y D E Q+ LSNV GL S ++H+ Sbjct: 192 SLPIIQVAIASGGGYIDKVREAQLGLKLSNVVCVDAKGLPLKSDNLHL 239 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 25.9 bits (57), Expect = 1.8 Identities = 5/27 (18%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Query: 65 AVASIMGLGT-ISISVHMQLGMQVIIE 90 ++A +M + + + + + + MQV + Sbjct: 1 SLADVMSIESLVEVVFYRGMTMQVAVP 27 >1ohu_A Apoptosis regulator CED-9; BCL-2 family; 2.03A {Caenorhabditis elegans} (A:) Length = 175 Score = 25.6 bits (56), Expect = 2.6 Identities = 3/14 (21%), Positives = 8/14 (57%) Query: 86 QVIIEDYIHYRLLK 99 + + DY +R+ + Sbjct: 14 EGFVVDYFTHRIRQ 27 >1zmb_A Acetylxylan esterase related enzyme; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.61A {Clostridium acetobutylicum atcc 824} (A:1-248) Length = 248 Score = 25.0 bits (54), Expect = 3.2 Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 12/59 (20%) Query: 35 NIPFIIFFIAFFIKYGDAPY------------EQIVSVLSNVAVASIMGLGTISISVHM 81 +IP II + F+ ++ N + GL +H+ Sbjct: 150 DIPIIIGGLGDFLGKERFGKGCTEYNFINKELQKFAFEQDNCYFVTASGLTCNPDGIHI 208 >2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 2ziy_A* (A:) Length = 448 Score = 25.3 bits (53), Expect = 3.4 Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 7/47 (14%) Query: 24 HFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIM 70 H + F + + + I I I+ N V + Sbjct: 20 HPHWREFDQVPDAVYYSLGIFIGICG-------IIGCGGNGIVIYLF 59 >3fbx_A Putative phospholipase B-like 2; alpha beta, glycosylated, disulphide bonds, oxidized cysteine, alternative splicing, glycoprotein, hydrolase; HET: NAG PG4 PGE; 2.40A {Mus musculus} (A:) Length = 559 Score = 24.5 bits (53), Expect = 4.7 Identities = 10/30 (33%), Positives = 14/30 (46%) Query: 9 LGRVRGMGSAKDGTGHFIKQRFTAIANIPF 38 L ++ GM D T K + A NIP+ Sbjct: 360 LEQIPGMVVVADKTAELYKTTYWASYNIPY 389 >2a5y_A Apoptosis regulator CED-9; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} (A:) Length = 204 Score = 24.5 bits (53), Expect = 5.3 Identities = 3/12 (25%), Positives = 7/12 (58%) Query: 86 QVIIEDYIHYRL 97 + + DY +R+ Sbjct: 34 EGFVVDYFTHRI 45 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.337 0.149 0.436 Gapped Lambda K H 0.267 0.0723 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 962,981 Number of extensions: 38410 Number of successful extensions: 174 Number of sequences better than 10.0: 1 Number of HSP's gapped: 173 Number of HSP's successfully gapped: 24 Length of query: 130 Length of database: 4,956,049 Length adjustment: 77 Effective length of query: 53 Effective length of database: 2,353,064 Effective search space: 124712392 Effective search space used: 124712392 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.7 bits) S2: 50 (23.1 bits)