RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781042|ref|YP_003065455.1| succinate dehydrogenase
hydrophobic membrane anchor [Candidatus Liberibacter asiaticus str.
psy62]
         (130 letters)



>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD
           {Escherichia coli [TaxId: 562]}
          Length = 113

 Score = 69.7 bits (171), Expect = 7e-14
 Identities = 25/111 (22%), Positives = 49/111 (44%)

Query: 14  GMGSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGLG 73
                ++G   FI  R TAI    +II+ + FF   G+  YE  +   ++        L 
Sbjct: 3   ASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLA 62

Query: 74  TISISVHMQLGMQVIIEDYIHYRLLKIMFLFMNSCFVLLLIIFCLFSLLKI 124
             SI +H  +GM  ++ DY+    L++M   +    +++ +I+    +  +
Sbjct: 63  LFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV 113


>d2apja1 c.23.10.7 (A:17-260) Putative acetylxylan esterase
           At4g34215 {Thale cress (Arabidopsis thaliana) [TaxId:
           3702]}
          Length = 244

 Score = 24.9 bits (53), Expect = 2.4
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 35  NIPFIIFFIAFFIKYGDAPYEQIVSV-LSNVAVASIMGLGTISISVHM 81
           ++P I   IA    Y D   E  + + LSNV      GL   S ++H+
Sbjct: 176 SLPIIQVAIASGGGYIDKVREAQLGLKLSNVVCVDAKGLPLKSDNLHL 223


>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus
          carota) [TaxId: 4039]}
          Length = 319

 Score = 24.9 bits (54), Expect = 2.4
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 18/64 (28%)

Query: 18 AKDGTGHF--IKQRFTAIANIP------FIIFFIAFFIKYGDAPYEQIVSVLSNVAVASI 69
          A DG+G +  + +   A+A  P      ++I      IK G   Y + V V         
Sbjct: 12 AADGSGDYKTVSE---AVAAAPEDSKTRYVI-----RIKAGV--YRENVDVPKKKKNIMF 61

Query: 70 MGLG 73
          +G G
Sbjct: 62 LGDG 65


>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 269

 Score = 24.7 bits (54), Expect = 3.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 84  GMQVIIEDYIHYRLLKIMFLFMNSCFVLL 112
           G+Q  +E++IH +  ++   F    F  L
Sbjct: 204 GLQNKVENFIHKQEKRLFTNFHRQLFCWL 232


>d1pq1a_ f.1.4.1 (A:) Apoptosis regulator Bcl-xL {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 196

 Score = 24.2 bits (52), Expect = 3.9
 Identities = 3/10 (30%), Positives = 8/10 (80%)

Query: 88 IIEDYIHYRL 97
          ++ D++ Y+L
Sbjct: 8  LVVDFLSYKL 17


>d1ohua_ f.1.4.1 (A:) Apoptosis regulator ced-9 {Nematode
          (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 172

 Score = 24.1 bits (52), Expect = 4.0
 Identities = 3/12 (25%), Positives = 7/12 (58%)

Query: 86 QVIIEDYIHYRL 97
          +  + DY  +R+
Sbjct: 11 EGFVVDYFTHRI 22


>d1g5ma_ f.1.4.1 (A:) Bcl-2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 164

 Score = 23.7 bits (51), Expect = 5.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 88 IIEDYIHYRLLK 99
          I+  YIHY+L +
Sbjct: 12 IVMKYIHYKLSQ 23


>d2c4va1 c.23.13.1 (A:1-158) Type II 3-dehydroquinate dehydratase
           {Helicobacter pylori [TaxId: 210]}
          Length = 158

 Score = 23.3 bits (50), Expect = 7.6
 Identities = 5/18 (27%), Positives = 6/18 (33%)

Query: 59  SVLSNVAVASIMGLGTIS 76
           S         IMG G + 
Sbjct: 116 SYTGAACGGVIMGFGPLG 133


>d2ilxa1 d.61.1.3 (A:1-219) 2',3'-cyclic nucleotide
          3'-phosphodiesterase, catalytic domain {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 219

 Score = 23.2 bits (50), Expect = 8.3
 Identities = 5/17 (29%), Positives = 7/17 (41%)

Query: 37 PFIIFFIAFFIKYGDAP 53
          P ++     F  YG A 
Sbjct: 67 PGVLHCTTKFCDYGKAT 83


>d1f45b_ a.26.1.1 (B:) Heterodimeric interleukin-12 alpha chain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 178

 Score = 23.0 bits (49), Expect = 9.3
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 3/35 (8%)

Query: 72  LGTISISVHMQLGMQVIIEDYIHYRLLKIMFLFMN 106
           L +   S  M L +  I ED   Y++    F  MN
Sbjct: 70  LASRKTSFMMALCLSSIYEDLKMYQVE---FKTMN 101


>d1zy3a1 f.1.4.1 (A:1-170) Apoptosis regulator Bcl-w {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 170

 Score = 23.0 bits (49), Expect = 9.4
 Identities = 3/12 (25%), Positives = 9/12 (75%)

Query: 86 QVIIEDYIHYRL 97
          + ++ D++ Y+L
Sbjct: 10 RALVADFVGYKL 21


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.337    0.149    0.436 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 486,509
Number of extensions: 21455
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 23
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 48 (22.4 bits)