BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781042|ref|YP_003065455.1| succinate dehydrogenase
hydrophobic membrane anchor [Candidatus Liberibacter asiaticus str.
psy62]
         (130 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781042|ref|YP_003065455.1| succinate dehydrogenase hydrophobic membrane anchor [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 130

 Score =  259 bits (661), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MDFDMRSSLGRVRGMGSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSV 60
           MDFDMRSSLGRVRGMGSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSV
Sbjct: 1   MDFDMRSSLGRVRGMGSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSV 60

Query: 61  LSNVAVASIMGLGTISISVHMQLGMQVIIEDYIHYRLLKIMFLFMNSCFVLLLIIFCLFS 120
           LSNVAVASIMGLGTISISVHMQLGMQVIIEDYIHYRLLKIMFLFMNSCFVLLLIIFCLFS
Sbjct: 61  LSNVAVASIMGLGTISISVHMQLGMQVIIEDYIHYRLLKIMFLFMNSCFVLLLIIFCLFS 120

Query: 121 LLKIAILGTL 130
           LLKIAILGTL
Sbjct: 121 LLKIAILGTL 130


>gi|255764462|ref|YP_003064709.2| methionyl-tRNA formyltransferase [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 310

 Score = 21.9 bits (45), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 9/49 (18%)

Query: 24 HFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGL 72
          H   Q F+  A +P          K G   YEQ +S  ++VAV    GL
Sbjct: 52 HKKAQEFSLPALVP---------TKLGQEEYEQFLSFNADVAVVVAYGL 91


>gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 475

 Score = 21.2 bits (43), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 20  DGTGHFIK 27
           DG+GHF+K
Sbjct: 177 DGSGHFVK 184


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.337    0.149    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,560
Number of Sequences: 1233
Number of extensions: 2778
Number of successful extensions: 20
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 13
length of query: 130
length of database: 328,796
effective HSP length: 65
effective length of query: 65
effective length of database: 248,651
effective search space: 16162315
effective search space used: 16162315
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 33 (17.3 bits)