BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781042|ref|YP_003065455.1| succinate dehydrogenase hydrophobic membrane anchor [Candidatus Liberibacter asiaticus str. psy62] (130 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781042|ref|YP_003065455.1| succinate dehydrogenase hydrophobic membrane anchor [Candidatus Liberibacter asiaticus str. psy62] Length = 130 Score = 259 bits (661), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 130/130 (100%), Positives = 130/130 (100%) Query: 1 MDFDMRSSLGRVRGMGSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSV 60 MDFDMRSSLGRVRGMGSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSV Sbjct: 1 MDFDMRSSLGRVRGMGSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSV 60 Query: 61 LSNVAVASIMGLGTISISVHMQLGMQVIIEDYIHYRLLKIMFLFMNSCFVLLLIIFCLFS 120 LSNVAVASIMGLGTISISVHMQLGMQVIIEDYIHYRLLKIMFLFMNSCFVLLLIIFCLFS Sbjct: 61 LSNVAVASIMGLGTISISVHMQLGMQVIIEDYIHYRLLKIMFLFMNSCFVLLLIIFCLFS 120 Query: 121 LLKIAILGTL 130 LLKIAILGTL Sbjct: 121 LLKIAILGTL 130 >gi|255764462|ref|YP_003064709.2| methionyl-tRNA formyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 310 Score = 21.9 bits (45), Expect = 4.4, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 9/49 (18%) Query: 24 HFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGL 72 H Q F+ A +P K G YEQ +S ++VAV GL Sbjct: 52 HKKAQEFSLPALVP---------TKLGQEEYEQFLSFNADVAVVVAYGL 91 >gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 475 Score = 21.2 bits (43), Expect = 7.7, Method: Compositional matrix adjust. Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 20 DGTGHFIK 27 DG+GHF+K Sbjct: 177 DGSGHFVK 184 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.337 0.149 0.436 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,560 Number of Sequences: 1233 Number of extensions: 2778 Number of successful extensions: 20 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 13 length of query: 130 length of database: 328,796 effective HSP length: 65 effective length of query: 65 effective length of database: 248,651 effective search space: 16162315 effective search space used: 16162315 T: 11 A: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.7 bits) S2: 33 (17.3 bits)