HHsearch alignment for GI: 254781043 and conserved domain: COG1635
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism].
Probab=99.41 E-value=3.3e-12 Score=98.45 Aligned_cols=140 Identities=28% Similarity=0.381 Sum_probs=98.5
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~--GGm-------------------------lf~~iVv~ 82 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWG--GGM-------------------------LFNKIVVR 82 (262)
T ss_pred HCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCC--CCC-------------------------CCCCEEEC
T ss_conf 326799876850578999998679649999730146876334--433-------------------------35604442
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCE
Q ss_conf 99998899999999869981327998551001464114567876564079866654266789999998731230311315
Q gi|254781043|r 97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYF 176 (611)
Q Consensus 97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~ 176 (611)
T Consensus 83 ------~~a~~iL~e~gI~ye~~e~g~~v-----------------------~d--s~e~~skl~~~a~~aGaki~n~~~ 131 (262)
T COG1635 83 ------EEADEILDEFGIRYEEEEDGYYV-----------------------AD--SAEFASKLAARALDAGAKIFNGVS 131 (262)
T ss_pred ------CHHHHHHHHHCCCCEECCCCEEE-----------------------EC--HHHHHHHHHHHHHHCCCEEEECCE
T ss_conf ------53899999819852445796698-----------------------32--799999999998730810242324
Q ss_pred EEEEEECCCCCCEEEEEEEEC----C---CEEEEECCCCEEEECCC
Q ss_conf 652000134430124689805----8---70899506724741576
Q gi|254781043|r 177 ALDLIINSEGCCVGVVAWQLE----T---GEIHRFSAKLVVLATGG 215 (611)
Q Consensus 177 ~~~Li~d~dG~V~Gav~~~~~----~---G~~~~i~AkaVILATGG 215 (611)
T Consensus 132 veDvi~r~~~rVaGvVv-NWt~V~~~~lhvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 132 VEDVIVRDDPRVAGVVV-NWTPVQMAGLHVDPLTIRAKAVVDATGH 176 (262)
T ss_pred EEEEEEECCCCEEEEEE-ECCHHHHCCCCCCCCEEEEEEEEECCCC
T ss_conf 77899816994689998-2512220565427511247899967888