HHsearch alignment for GI: 254781043 and conserved domain: PRK05192
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated.
Probab=99.37 E-value=5.7e-12 Score=96.89 Aligned_cols=151 Identities=33% Similarity=0.409 Sum_probs=82.5
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 3231058898996899999999998898299998689--88521041165342513789999999999989984588779
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVF--PTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGD 91 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~--~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d 91 (611)
T Consensus 3 ~~~~yDVIViG~GhAG~EAa~aaar~G~~t~lit~~~~~ig~msCNPsiGGi~K--G~-----lvr-EidaL---gG~-- 69 (621)
T PRK05192 3 YPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAK--GH-----LVR-EIDAL---GGE-- 69 (621)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCCH--HH-----HHH-HHHHC---CCH--
T ss_conf 888798899897579999999999679967999658131158604520367216--57-----666-87753---689--
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC--CEEEEECCCCCHHHHHHHHHHHHH-CC
Q ss_conf 999999999889999999986998132799855100146411456787656--407986665426678999999873-12
Q gi|254781043|r 92 VDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPV--QRTCAAADRTGHAILHTLYGQALK-NN 168 (611)
Q Consensus 92 ~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~--~R~~~~~d~tG~~i~~~L~~~~~~-~g 168 (611)
T Consensus 70 ---mg~~aD----------~~~Iq~r~---------------LN~sKGpAv~~~Ra--Q~Dr--~~Y~~~~~~~l~~~~n 117 (621)
T PRK05192 70 ---MGKAAD----------KTGIQFRM---------------LNTSKGPAVRAPRA--QADR--KLYRAAMREILENQPN 117 (621)
T ss_pred ---HHHHHH----------HHHHHHHH---------------HCCCCCCCCCCHHH--HHHH--HHHHHHHHHHHHCCCC
T ss_conf ---999998----------87616876---------------15888830067398--8859--9999999999964999
Q ss_pred CEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCC
Q ss_conf 303113156520001344301246898058708995067247415765
Q gi|254781043|r 169 AEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGY 216 (611)
Q Consensus 169 v~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~ 216 (611)
T Consensus 118 l~i~~~-~v~~l~~~-~~~v~GV~~---~~g~--~i~a~~vvlttGTF 158 (621)
T PRK05192 118 LTLFQG-EVEDLIVE-NDRVKGVVT---QDGL--EFRAKAVVLTTGTF 158 (621)
T ss_pred CEEEEE-EEEEEEEE-CCEEEEEEE---CCCE--EEEEEEEEEECCCC
T ss_conf 789981-45799987-999999996---6870--99852699831564