HHsearch alignment for GI: 254781043 and conserved domain: PRK06069
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed.
Probab=100.00 E-value=0 Score=1106.42 Aligned_cols=567 Identities=45% Similarity=0.718 Sum_probs=524.1
Q ss_pred EEECEEEECCCHHHHHHHHHHHHC---CCCEEEEECCCCCCCCCHHCCCCEEEECCC-CCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 310588989968999999999988---982999986898852104116534251378-9999999999989984588779
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEK---GFKTACITKVFPTRSHTVAAQGGIAASLAN-MTPDSWQWHLYDTIKGSDWLGD 91 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~---G~~V~lieK~~~~~g~s~~A~GGi~a~~~~-~~~Ds~~~~~~Dt~~~g~~l~d 91 (611)
T Consensus 4 ~~~DVlVIG~G~AGl~AA~~a~~~~~~~~~V~lv~K~~~~~s~s~~a~gG~~a~~~~~~~~Ds~~~~~~Dt~~~g~~l~d 83 (582)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAARASGGKISIAVVSKTQAMRSHSVSAEGGTAAVLYPEKTGDSPELHAYDTVKGSDFLAD 83 (582)
T ss_pred EECCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 87068999973999999999998538998699997989999708999877998717888999989999999985368888
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCE
Q ss_conf 999999999889999999986998132799855100146411456787656407986665426678999999873-1230
Q gi|254781043|r 92 VDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NNAE 170 (611)
Q Consensus 92 ~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gv~ 170 (611)
T Consensus 84 ~~lv~~l~~~a~~~v~~le~~Gv~f~r~~~G~~~~~~~gGhs--------~~R~~~~~d~tG~~i~~~l~~~~~~~~gv~ 155 (582)
T PRK06069 84 QDAVEVLVREAPEEIRFLDHWGVPWSRDPDGRISQRPFGGMS--------FPRTTFAADKTGFYIMSTLYSRALRFDNIH 155 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEECCCCC--------CCEEECCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 999999999899999999976997106899988752158703--------450003678753999999999998469948
Q ss_pred EECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCC
Q ss_conf 31131565200013443012468980587089950672474157656543342106401444887887513653333222
Q gi|254781043|r 171 FFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFV 250 (611)
Q Consensus 171 i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~ 250 (611)
T Consensus 156 ~~~~~~vt~Ll~~-~g~v~Ga~~~d~~~G~~~~i~AkaVVlATGG~g~l~~~~t~~~~~TGdg~~~a~~aGA~l~~mEfv 234 (582)
T PRK06069 156 FYHEHFVTSLIVE-NGVFKGVTAIDLRRGEFKVFQAKAGIIATGGAGRLYRFTTYAHSVTGDGLGYALRAGIPLKDMEFV 234 (582)
T ss_pred EEEEEEEEEEEEC-CCEEEEEEEEECCCCEEEEEEECEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHH
T ss_conf 9977898888743-998999999976898299998255998988675467877899998868999999769971484267
Q ss_pred CCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCC--CEEEEEECCC
Q ss_conf 32888442201430456655780898326861255407651004752011156889988178888888--7468861117
Q gi|254781043|r 251 QFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSK--DHIHLYLNHL 328 (611)
Q Consensus 251 qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~--~~v~ld~~~~ 328 (611)
T Consensus 235 Q~hPt~~~p~g~l~~e~~rg~G~~l~n~~GerF~~~y~~~~~elaprdvv~~ai~~e~~~grg~~~~~g~~~v~ld~~~~ 314 (582)
T PRK06069 235 QFHPTALVPSGILITEAARGEGGYLINKEGERFMKRYAPQKMELAPRDVVSRAIMTECMEGRGFDHESGLCYVGLDLRHL 314 (582)
T ss_pred HHCCCCCCCCCCEEHHHCCCCCCEEECCCCCEEHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
T ss_conf 51766315776152032016775897469978023208652333636666377899999657967788850689866558
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 98999998537999997643678654406752033100123421577158537788853322760340212203356643
Q gi|254781043|r 329 DPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGAN 408 (611)
Q Consensus 329 ~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGan 408 (611)
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~giD~~~~~i~v~P~~Hy~mGGi~id~~~~v~~~~----~t~I~GLyAaGE~a~~G~HGan 390 (582)
T PRK06069 315 GEEKINERLPLIRELAKKYAGIDPVTEPIPVRPAVHYTMGGIHTDVRGRVLTAD----GTWVRGLWAAGEAAAVSVHGAN 390 (582)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEECCCEEECCCCEEECCC----CCCCCCCEECCCCCCCCCCCCC
T ss_conf 989997551489999998528886667436650354643780778784772578----8623772114654446556787
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH---HHHHHHHHHCC--CCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 04764322222232156775566542026566764002---35788863101--03788713689998788766509726
Q gi|254781043|r 409 RLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISS---CDRIMDRFDRL--RHADGHVPTAALREKMQRAMQLDAGV 483 (611)
Q Consensus 409 rlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~g~~~~~~i~~~Lq~iM~~~~gi 483 (611)
T Consensus 391 RLggnsl~e~~VfG~iAG~~Aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~im~~~~gi 470 (582)
T PRK06069 391 RLGSNSLAECLVWGRIAGEQAAKYALERPALGEPDGKLVELVEKEEKRIFDKLLKKEVGGESPYEIRRELRDIMEKNVGI 470 (582)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 65541488999989999999999997388878994456778887887766777521679989899999999999835887
Q ss_pred EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCC
Q ss_conf 87589999999999999999841515787754588999999888899999999999962625504623533778876668
Q gi|254781043|r 484 FRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGR 563 (611)
Q Consensus 484 ~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~r 563 (611)
T Consensus 471 ~R~~~~L~~al~~l~~l~~~~~~~~~~d~~~~~n~el~~~~E~~~~l~~a~~~~~aal~R~ESRG~H~R~DyP~-----~ 545 (582)
T PRK06069 471 FRDESGLAEALKKIKKLRERFKEVRIEDKSRIYNMELKDALELDGMLDLAEVVAIGALLRTESRGAHYRLDYPK-----R 545 (582)
T ss_pred EECHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----C
T ss_conf 88689999999999999999973874776301218999999999999999999999972401555354777798-----8
Q ss_pred CCHHHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 803213569999846898059999447444256755000027721679
Q gi|254781043|r 564 DDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 564 DD~nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
T Consensus 546 dd~nwl~~~~~~~~--~~~~~~~~~pv---------~~~~~~p~~r~y 582 (582)
T PRK06069 546 DDENWLKHTLAYLT--GGGPKITYTPV---------TITKWKPEERKY 582 (582)
T ss_pred CCCCCCCEEEEEEE--CCCCEEEEEEE---------EEEEECCCCCCC
T ss_conf 77303838999993--89757998853---------266658826879