HHsearch alignment for GI: 254781043 and conserved domain: PRK06263
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed.
Probab=100.00 E-value=0 Score=1025.94 Aligned_cols=524 Identities=38% Similarity=0.608 Sum_probs=485.5
Q ss_pred EEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC-CHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 3105889899689999999999889829999868988521-041165342513789999999999989984588779999
Q gi|254781043|r 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSH-TVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA 94 (611)
Q Consensus 16 ~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~-s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l 94 (611)
T Consensus 6 i~TDVlVIGsG~AGl~AA~~a~~~g-~vvlv~k~~~~~sG~s~~a~gg~~a~~~--~~Ds~e~~~~Dt~~~g~~l~d~~l 82 (539)
T PRK06263 6 MITDVLIIGSGGAGARAAIEASQKG-TVVIVSKGLFGKSGCTVMAEGGYNAVLN--PEDSFEKHFEDTMKGGAYLNDPKL 82 (539)
T ss_pred EECCEEEECCHHHHHHHHHHHHHCC-CEEEEECCCCCCCCCHHHHHHHHEEECC--CCCCHHHHHHHHHHHCCCCCCHHH
T ss_conf 9649899995399999999998259-9799977898999847888667715089--999999999999985268888999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf 99999988999999998699813279985510014641145678765640798666542667899999987312303113
Q gi|254781043|r 95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIE 174 (611)
Q Consensus 95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~ 174 (611)
T Consensus 83 v~~l~~~a~~~v~~L~~~G~~f~~~~~g~~~~~~~gg~s--------~~R~~~~~~~tG~~i~~~L~~~~~~~gv~i~~~ 154 (539)
T PRK06263 83 VEILVKEAPKRLKDLEKFGAVFDRTEDGEIAQRPFGGQS--------FNRTCYAGDRTGHEMMMGLMEYLIKERIKILEE 154 (539)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCC--------CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 999999999999999983998512799867310047854--------443223577661999999999986169779951
Q ss_pred CEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 15652000134430124689805870899506724741576565433421064014448878875136533332223288
Q gi|254781043|r 175 YFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHP 254 (611)
Q Consensus 175 ~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhP 254 (611)
T Consensus 155 ~~~~~Ll~~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~ly~~~tn~~~~TGdG~~mA~raGA~l~~mEfvQfhP 234 (539)
T PRK06263 155 VMAIKLLVDELGKVFGAVFLDLRNGDIVPIYAKSTILATGGAGQLYPITSNPIQKTGDGFAMAYRAGAELIDMEMVQFHP 234 (539)
T ss_pred EEEEEEEECCCCEEEEEEEEECCCCEEEEEEECEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHEEEC
T ss_conf 59999998179969999999778982999960569989898765687767999967299999998699726961530565
Q ss_pred CCCC----CCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCH
Q ss_conf 8442----201430456655780898326861255407651004752011156889988178888888746886111798
Q gi|254781043|r 255 TGIY----GAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDP 330 (611)
Q Consensus 255 t~~~----~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~ 330 (611)
T Consensus 235 t~~~~~~~~~g~l~~e~~rg~Gg~l~n~~GerF~~~y~p~~~el~~rd~v~~ai~~e~~~grg~~~~--~v~ld~~~l~~ 312 (539)
T PRK06263 235 TGMVYPYSGRGILVTEAVRGEGGILYNKNGERFMKRYDPERMELSTRDVVARAIYTEIQEGRGTPHG--GVYLDVTHLPD 312 (539)
T ss_pred CEECCCCCCCCEEECHHHCCCCCEEECCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--CEEEECCCCCH
T ss_conf 6104688886416326451688689616984801021653122332459999999999966788888--45755403998
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 99999853799999764367865440675203310012342157715853778885332276034021220335664304
Q gi|254781043|r 331 AVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRL 410 (611)
Q Consensus 331 ~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrl 410 (611)
T Consensus 313 e~~~~~~~~~~~~~~~~-giD~~~~~i~v~P~~h~~mGGi~id~~~~----------t~I~GLyAaGE~a-gG~hGanRl 380 (539)
T PRK06263 313 EVIEEKLETMLSQFLDV-GVDIRKEPMEVAPTAHHFMGGIKINEDCE----------TNIPGLFACGEVA-GGVHGANRL 380 (539)
T ss_pred HHHHHHHHHHHHHHHHH-CCCCCCCCEEEECCCCEECCCEEECCCCC----------CCCCCEEECCCCC-CCCCCCCCC
T ss_conf 99875408999999983-88876784588457774039989998876----------0578737756645-476889886
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf 76432222223215677556654202656676400235788863101037887136899987887665097268758999
Q gi|254781043|r 411 GSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSL 490 (611)
Q Consensus 411 ggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L 490 (611)
T Consensus 381 ggnsl~e~~VfG~~Ag~~Aa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lq~~m~~~~gi~R~~~~L 458 (539)
T PRK06263 381 GGNALADTQVFGARAGKSAAKNAENEKD-ISKDYDQVEEEIERLESYIS-NGGINPYDLRDELKKTMWDYVGIVRDEKGL 458 (539)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHCCCEEECHHHH
T ss_conf 0247788899999999999987650787-68996788999999864423-589998999999999998489979989999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCE
Q ss_conf 99999999999998415157877545889999998888999999999999626255046235337788766688032135
Q gi|254781043|r 491 SDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRK 570 (611)
Q Consensus 491 ~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~ 570 (611)
T Consensus 459 ~~al~~l~~l~~~--~~~~~~~-----~~l~~~~E~~~~l~~a~~~~~aal~R~ESRG~H~R~DyP~-----~dd~~w~~ 526 (539)
T PRK06263 459 KTALEKINELKEK--NLKINGI-----VDFSDKLELENMILVAELVVKSALLRKESRGAHYRTDYPE-----TNDEEPFG 526 (539)
T ss_pred HHHHHHHHHHHHH--CCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCC-----CCCHHHCC
T ss_conf 9999999999973--4557886-----7899999999999999999999975420212200877899-----98435501
Q ss_pred EEEEEEEC
Q ss_conf 69999846
Q gi|254781043|r 571 HSLCWVDW 578 (611)
Q Consensus 571 h~~~~~~~ 578 (611)
T Consensus 527 ~t~~~~~~ 534 (539)
T PRK06263 527 NTVASKNK 534 (539)
T ss_pred CCEEEECC
T ss_conf 60573068