HHsearch alignment for GI: 254781043 and conserved domain: PRK08205
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed.
Probab=100.00 E-value=0 Score=1157.28 Aligned_cols=577 Identities=51% Similarity=0.841 Sum_probs=543.3
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
T Consensus 2 ~~~~~DVlVIGsG~AGl~AAi~a~~-~~~v~vi~K~~~~~s~s~~a~gGi~a~~~~~~~Ds~e~~~~Dt~~aG~~l~d~~ 80 (583)
T PRK08205 2 QQHRYDVVIVGAGGAGMRAAIEAGP-RARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQD 80 (583)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 7431788999962999999997156-997799978899997288886557402279999999999999998626877999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf 99999998899999999869981327998551001464114567876564079866654266789999998731230311
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFI 173 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~ 173 (611)
T Consensus 81 lv~~l~~~~~~~i~~Le~~Gv~f~r~~~G~~~~~~~gghs~~~g~-~~~~r~~~~~d~tG~~i~~~L~~~~~~~~i~~~~ 159 (583)
T PRK08205 81 AAEIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGK-APVRRACYAADRTGHMILQTLYQNCVKHGVEFFN 159 (583)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCEECCCCCCCCCCCCC-CCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 999999989999999997799730179987711243663345567-7630367506665099999999999877987997
Q ss_pred CCEEEEEEE---CCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCC
Q ss_conf 315652000---13443012468980587089950672474157656543342106401444887887513653333222
Q gi|254781043|r 174 EYFALDLII---NSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFV 250 (611)
Q Consensus 174 ~~~~~~Li~---d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~ 250 (611)
T Consensus 160 ~~~~~~ll~~~~~~~g~v~Ga~~~d~~~g~~~~i~AkaVIlATGG~~~ly~~ttn~~~~tGdG~~mA~raGA~l~dmEfi 239 (583)
T PRK08205 160 EFYVLDLILTETPGGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRVYKTTSNAHTLTGDGMGIVFRKGLPLEDMEFH 239 (583)
T ss_pred EEEEEEEEEEEECCCCCEEEEEEEEECCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHE
T ss_conf 78999999988648982899999980799789997297998889875665565799885529999999869871682111
Q ss_pred CCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCH
Q ss_conf 32888442201430456655780898326861255407651004752011156889988178888888746886111798
Q gi|254781043|r 251 QFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDP 330 (611)
Q Consensus 251 qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~ 330 (611)
T Consensus 240 Q~hPt~~~~~g~l~~e~~rgeGg~l~n~~GeRFm~~y~p~~~elaprd~va~ai~~ei~~grg~~~~~~~v~ld~~~l~~ 319 (583)
T PRK08205 240 QFHPTGLAGLGILISEAARGEGGILRNSEGERFMERYAPTIKDLAPRDIVARSMVLEVREGRGAGPNKDYVYLDLTHLGE 319 (583)
T ss_pred ECCCCCCCCCCCCCCHHHCCCCCEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
T ss_conf 02563224677654652226885752668868010117211102650066698999987536877886500010025999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 99999853799999764367865440675203310012342157715853778885332276034021220335664304
Q gi|254781043|r 331 AVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRL 410 (611)
Q Consensus 331 ~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrl 410 (611)
T Consensus 320 e~l~~~~~~~~~~~~~~~giD~~~~~i~v~P~~Hy~mGGi~id~~~~V~~~~----~T~I~GLyAaGEva~~GvHGaNRL 395 (583)
T PRK08205 320 EVLEAKLPDITEFARTYLGVDPVKELVPVYPTAHYAMGGIPTTVTGQVLRDN----TTVVPGLYAAGECACVSVHGANRL 395 (583)
T ss_pred HHHHHHCHHHHHHHHHHCCCCCCCCCEEEECCCCEEECCEEECCCCEEECCC----CCCCCCCEECCCCCCCCCCCCCCH
T ss_conf 9998766059999998538986467347741344652578968887794579----976687554266553677887531
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf 76432222223215677556654202656676400235788863101037887136899987887665097268758999
Q gi|254781043|r 411 GSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSL 490 (611)
Q Consensus 411 ggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L 490 (611)
T Consensus 396 ggnsl~e~~VfGr~AG~~Aa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~m~~~~gi~R~~~~L 474 (583)
T PRK08205 396 GTNSLLDINVFGRRAGIAAAEYARGADFV-DLPEDPEAMVVGWVEDLLSEHGNERVADIRGELQQSMDNNASVFRTEETL 474 (583)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 56789999999999999999975128878-89730689999999887525789889999999999998616700389999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCE
Q ss_conf 99999999999998415157877545889999998888999999999999626255046235337788766688032135
Q gi|254781043|r 491 SDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRK 570 (611)
Q Consensus 491 ~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~ 570 (611)
T Consensus 475 ~~al~~l~~l~~~~~~~~~~d~~~~~n~dl~~~~E~~~~l~~a~~~~~aAl~R~ESRG~H~R~DyPe-----rDD~nwlk 549 (583)
T PRK08205 475 KQALTDIHALKERYSRITVQDKGKRFNSDLLEAIELGFLLDLAEVTVVGALNRKESRGGHAREDYPN-----RDDVNYMR 549 (583)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCC-----CCCCCCCC
T ss_conf 9999999999999960843686533277899999999999999999999972643532103757798-----87614055
Q ss_pred EEEEEEECCC--CEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 6999984689--8059999447444256755000027721679
Q gi|254781043|r 571 HSLCWVDWNT--GKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 571 h~~~~~~~~~--g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
T Consensus 550 ht~~~~~~~~~~~~~~~~~~~v---------~~~~~~p~~r~y 583 (583)
T PRK08205 550 HTMAYREKTDLLSDIRLDYKPV---------VQTRYEPMERKY 583 (583)
T ss_pred EEEEEECCCCCCCCCEEEEECC---------EEEECCCCCCCC
T ss_conf 0788724888788754664134---------664149806889