HHsearch alignment for GI: 254781043 and conserved domain: PRK08641
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed.
Probab=100.00 E-value=0 Score=1111.70 Aligned_cols=561 Identities=33% Similarity=0.454 Sum_probs=518.5
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCC-CCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 105889899689999999999889829999868988521041165342513789-9999999999899845887799999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANM-TPDSWQWHLYDTIKGSDWLGDVDAI 95 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~-~~Ds~~~~~~Dt~~~g~~l~d~~lv 95 (611)
T Consensus 3 ~~DVlVIGsG~AGl~AAi~a~~~G~~V~v~~k~~~~~~~S~~a~gGi~aa~~~~~~~Ds~~~h~~Dt~~aG~~l~d~~~v 82 (589)
T PRK08641 3 KKKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTIYGGDFLANQPPV 82 (589)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf 68789989869999999999875997799977788988306778779986047999989899999999955787889999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC----CCEE
Q ss_conf 999998899999999869981327998551001464114567876564079866654266789999998731----2303
Q gi|254781043|r 96 QYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN----NAEF 171 (611)
Q Consensus 96 ~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~----gv~i 171 (611)
T Consensus 83 ~~l~~~a~~~i~~Le~~Gv~f~r~~~g~~~~~~~GGhs--------~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~~ 154 (589)
T PRK08641 83 KAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTL--------HHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTK 154 (589)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCEEECCCCCCC--------CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 99999899999999983980225799887001257703--------6745357886389999999999983456576599
Q ss_pred ECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 11315652000134430124689805870899506724741576565433421064014448878875136533332223
Q gi|254781043|r 172 FIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQ 251 (611)
Q Consensus 172 ~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~q 251 (611)
T Consensus 155 ~~~~~~~~ll~~~~g~v~Gv~~~d~~~g~~~~i~AkaVILATGG~g~ly~~tTN~~~~TGdG~amA~raGA~l~dmEfiQ 234 (589)
T PRK08641 155 YEGWEFLGAVKDDEGRCRGIVAQNLFTMEIESFGADAVIMATGGPGIIFGKSTNSTINTGSAASRVYQQGAYYANGEFIQ 234 (589)
T ss_pred EECCEEEEEEECCCCEEEEEEEEECCCCEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEE
T ss_conf 97437889998279969999999888980999951569994688875544667999875199999998498815846145
Q ss_pred CCCCCCCCCE--EECCCCCCCCCEE-EEECCCCC--CCCCCCCCCCCCCCCCEEHHHHHHHHHH-CCCCCCCCCEEEEEE
Q ss_conf 2888442201--4304566557808-98326861--2554076510047520111568899881-788888887468861
Q gi|254781043|r 252 FHPTGIYGAG--CLITEGARGEGGY-LVNSKGER--FMERYAPSAKDLASRDVVSRCMMMEIRE-GRGVGKSKDHIHLYL 325 (611)
Q Consensus 252 fhPt~~~~~~--~l~~~~~rg~G~~-l~n~~Ger--f~~~y~~~~~el~~rd~~s~ai~~ei~~-g~g~~~~~~~v~ld~ 325 (611)
T Consensus 235 fhPT~l~~~~~~~Lisea~RGeGg~ll~~~~g~r~~f~~~~~~~~~~la~Rdvvarai~~~~~~~~~~-~~g~~~v~lD~ 313 (589)
T PRK08641 235 IHPTAIPGDDKLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFDVCVEQKLG-INGENMVYLDL 313 (589)
T ss_pred EEEEEECCCCCCEECCHHHCCCCCEEEECCCCCCCHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHCCC-CCCCCEEEEEC
T ss_conf 65205448887423557552789778305899611011102600101264019999999999983578-78877488541
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 11798999998537999997643678654406752033100123421577158537788853322760340212203356
Q gi|254781043|r 326 NHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVH 405 (611)
Q Consensus 326 ~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~h 405 (611)
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~D~~~~pi~V~P~~Hy~mGGi~iD~~~~----------T~IpGLyAaGE~a-~g~H 382 (589)
T PRK08641 314 SHKDPKELDIKLGGIIEIYEKFTGDDPRKVPMKIFPAVHYSMGGLWVDYDQM----------TNIPGLFAAGECD-YSYH 382 (589)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEECCCEEECCCCC----------CCCCCEEECCCCC-CCCC
T ss_conf 1289899998725589999997099964576145434101058767889886----------2368727754445-5667
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC-C----CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 6430476432222223215677556654202656676-4----0023578886310103788713689998788766509
Q gi|254781043|r 406 GANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSL-D----ISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLD 480 (611)
Q Consensus 406 Ganrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~ 480 (611)
T Consensus 383 GaNRLggNSLle~~VfG~~Ag~~Aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~m~~~ 462 (589)
T PRK08641 383 GANRLGANSLLSAIYGGMVAGPNAIRYIKGLGKSADDMPSSIFEQALKQEQEKFDRILSMDGTENAYVLHKELGEWMTDN 462 (589)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 75544310499999989999999999997468875558856777788888988887750578888899999999999862
Q ss_pred CEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCC
Q ss_conf 72687589999999999999999841515787754588999999888899999999999962625504623533778876
Q gi|254781043|r 481 AGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEF 560 (611)
Q Consensus 481 ~gi~R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~ 560 (611)
T Consensus 463 ~gi~R~~~~L~~al~~l~~l~e~~~~i~~~d~~~~~n~~~~~~~el~n~l~~a~~i~~aAl~R~ESRG~H~R~DyP~--- 539 (589)
T PRK08641 463 VTVVRENKKLLETDEKIKELMERYKRISVNDTSRWSNQGAHFTRQLWNMLELARVITIGALNRNESRGAHYKPEFPE--- 539 (589)
T ss_pred CCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCC---
T ss_conf 63761789999999999999999863887775212126689999999999999999999860622516437667899---
Q ss_pred CCCCCHHHCEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 668803213569999846898059999447444256755000027721679
Q gi|254781043|r 561 GGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 561 ~~rDD~nwl~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
T Consensus 540 --rdD~~wlkht~~~~~~~~~~~~~~~~pv---------~~~~~~p~~R~Y 579 (589)
T PRK08641 540 --RDDEEWLKTTMAKYQGEGEEPEFTYEDV---------DTSLIPPRKRDY 579 (589)
T ss_pred --CCCHHHHHHEEEEECCCCCCCEEEEECC---------CEEEECCCCCCC
T ss_conf --8635466456357637898642775235---------314678721556