HHsearch alignment for GI: 254781043 and conserved domain: PRK12842
>PRK12842 putative succinate dehydrogenase; Reviewed.
Probab=100.00 E-value=0 Score=433.59 Aligned_cols=412 Identities=23% Similarity=0.236 Sum_probs=273.6
Q ss_pred EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECC-----CCCCCCHHHHHHHHHHHCCCC
Q ss_conf 231058898996899999999998898299998689885210411653425137-----899999999999899845887
Q gi|254781043|r 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLA-----NMTPDSWQWHLYDTIKGSDWL 89 (611)
Q Consensus 15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~-----~~~~Ds~~~~~~Dt~~~g~~l 89 (611)
T Consensus 3 tie~DVvVVG~G~AGl~AAi~Aae~Ga~VillEK~~~~GG~s~~s~G~~~~~gt~~q~~~Gi~ds~e~~~~~~~~~~g~~ 82 (567)
T PRK12842 3 ELSCDVLVIGSGAAGLSAAITARKLGLDVVVLEKEPVFGGTTAFSGGVLWIPGNPHAREQGVADSREAARTYLKSETGAF 82 (567)
T ss_pred CCEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCEEECCCHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 73059699896889999999999879908999779988856798487812089999997099789999999999862755
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCEEE-------------------ECCCCCCCCCCC--------C--
Q ss_conf 7999999999988999999998-699813279985510-------------------014641145678--------7--
Q gi|254781043|r 90 GDVDAIQYLAMEAPQSVYELEH-YGVPFSRNEAGKIYQ-------------------RPFGGHMQNYGE--------G-- 139 (611)
Q Consensus 90 ~d~~lv~~~~~~a~~~i~~Le~-~Gv~f~r~~~G~~~~-------------------~~~gg~~~~~~~--------g-- 139 (611)
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~dy~~~~~g~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~ 162 (567)
T PRK12842 83 YDAAAVEAFLDNGPEMVAFFERETEVKFVPTLYPDYHPDAPGGVDIGRSIVAAPYDARGLGKDMARLKPPLKTITFIGMM 162 (567)
T ss_pred CCHHHHHHHHHHCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHCCCCCCCCCCCCCC
T ss_conf 88999999997279999999855686031256743246788872477502247766332140276516875433202300
Q ss_pred -----C-----------------CCCE--------EEE---ECCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCC
Q ss_conf -----6-----------------5640--------798---666542667899999987312303113156520001344
Q gi|254781043|r 140 -----P-----------------PVQR--------TCA---AADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEG 186 (611)
Q Consensus 140 -----~-----------------~~~R--------~~~---~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG 186 (611)
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~l~~~~~~~Gv~i~~~t~~~~Li~d-~g 241 (567)
T PRK12842 163 FNSSNADLKHFFNATRSLTSFLYVAKRLANHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGTPARELITE-GG 241 (567)
T ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEC-CC
T ss_conf 02542677888763015420256666754101344411566534553899999999999759889957888898862-99
Q ss_pred CCEEEEEEEECCCEEEEECC-CCEEEECCCCCCC------CC---------CCCCCCEECCHHHHHHHHHCCCCCCC--C
Q ss_conf 30124689805870899506-7247415765654------33---------42106401444887887513653333--2
Q gi|254781043|r 187 CCVGVVAWQLETGEIHRFSA-KLVVLATGGYGRA------YF---------SATSAHTCTGDGAGMVARAGLPLQDM--E 248 (611)
Q Consensus 187 ~V~Gav~~~~~~G~~~~i~A-kaVILATGG~~~l------y~---------~~t~~~~~tGdG~~mA~~aGa~l~~m--E 248 (611)
T Consensus 242 ~V~GV~a~~-~~g~~-~i~A~kgVILATGGf~~N~em~~~~~p~~~~~~~~~~~~~~~~tGdGi~ma~~~GA~~~~~~~~ 319 (567)
T PRK12842 242 RVVGARVGD-GGGER-RITARRGVVLACGGFPHDLARIARAYPHLARGGEHLSPVPAGNTGDGIRLAEAAGGAVDIRLPD 319 (567)
T ss_pred EEEEEEEEE-CCCEE-EEEECCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 799999996-89559-9981333899038855499999863823346765345788888659999999828775555665
Q ss_pred CCCCCCCCCCC-C----EEECCCCCC-CCCEEEEECCCCCCCCCCCCCC--C-----------CCCCCCEEHHHHHHHHH
Q ss_conf 22328884422-0----143045665-5780898326861255407651--0-----------04752011156889988
Q gi|254781043|r 249 FVQFHPTGIYG-A----GCLITEGAR-GEGGYLVNSKGERFMERYAPSA--K-----------DLASRDVVSRCMMMEIR 309 (611)
Q Consensus 249 f~qfhPt~~~~-~----~~l~~~~~r-g~G~~l~n~~Gerf~~~y~~~~--~-----------el~~rd~~s~ai~~ei~ 309 (611)
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~VN~~G~RF~nE~~~~~~~~~~~~~~~~~~~~~~~~~I~D~~~~~~~~ 399 (567)
T PRK12842 320 AAAWMPVSKVPMGNGETGVFPHLLDRYKPGVIAVLRNGKRFTNESNSYHDVGAAMIKACRGQKETAMWLICDRATLRKYG 399 (567)
T ss_pred CEEECCCCCCCCCCCCEEECHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHC
T ss_conf 40231444666899864324124533588468777888753678776668999999971279997589998899997614
Q ss_pred HCCCCCCC--------CCEEE-EE-E------CCCCHHHHHHHHHHHHHHHHHHCCCCCCC-------------------
Q ss_conf 17888888--------87468-86-1------11798999998537999997643678654-------------------
Q gi|254781043|r 310 EGRGVGKS--------KDHIH-LY-L------NHLDPAVLQERLPGISESARIFAGVDVTR------------------- 354 (611)
Q Consensus 310 ~g~g~~~~--------~~~v~-ld-~------~~~~~~~l~~~~~~~~~~~~~~~g~D~~~------------------- 354 (611)
T Consensus 400 ~g~~~~~~~~~~~~~~~g~~~kadTleELA~~~gvd~~~L~~TV~~yN~~~~~G~D~dFgk~~~~~~~~~~dp~~~p~~~ 479 (567)
T PRK12842 400 LGFVKPAPMPLGPLLRNGYLIRGDTLAELAGKAGIDAAGLEETVRRYNVGAVKGIDPAFGRGSTSFNRYLGDPENKPNPC 479 (567)
T ss_pred CCCCCCCCCCHHHHHHCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf 24357776344777537807872999999988396999999999999877402988233666412331146744588712
Q ss_pred ------CE---EEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCHH
Q ss_conf ------40---6752033100123421577158537788853322760340212203356643047-6432222223215
Q gi|254781043|r 355 ------DP---IPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLG-SNSLIDLVVFGRA 424 (611)
Q Consensus 355 ------~~---i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlg-gnsl~~~~vfG~~ 424 (611)
T Consensus 480 l~pi~~gPfYA~~~~p~~~~T~GGl~in~~~qVLd~dg~----pIpGLYAaG~~~-gg~~g~~y~g~G~slg~~~~fGri 554 (567)
T PRK12842 480 VAPIGSGPFYAVKVIMGDLGTFDGLATDVVGRVLDADGT----AIAGLYAVGNDR-ASIMGGNYPGAGITLGPIMTFGYI 554 (567)
T ss_pred CCCCCCCCEEEEEEECCCCCCCCCCEECCCCCEECCCCC----EECCEEECCCCC-CCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 165778997999977020616878119998735899979----859975675555-587989867506758889999999
Q ss_pred HHHHHHHHHH
Q ss_conf 6775566542
Q gi|254781043|r 425 AVIRASEMID 434 (611)
Q Consensus 425 Ag~~aa~~~~ 434 (611)
T Consensus 555 Ag~~aA~~~~ 564 (567)
T PRK12842 555 TARHLAGVAG 564 (567)
T ss_pred HHHHHHHHCC
T ss_conf 9999997417